Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207940 | GAU40839.1 | 69.373 | 813 | 219 | 7 | 7 | 805 | 29 | 825 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207940 | sp|Q9SWG3|FAR1_ARATH | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.64e-125 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1207940 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0205820 | Msa1207940 | 0.858973 | 5.701813e-63 | -8.615850e-47 |
| Msa1207930 | Msa1207940 | 0.941394 | 4.487878e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207940 | MtrunA17_Chr2g0296781 | 73.109 | 714 | 179 | 5 | 48 | 749 | 3 | 715 | 0.0 | 1090 |
| Msa1207940 | MtrunA17_Chr6g0477261 | 71.252 | 647 | 163 | 5 | 157 | 781 | 1 | 646 | 0.0 | 956 |
| Msa1207940 | MtrunA17_Chr1g0196541 | 60.598 | 769 | 258 | 6 | 48 | 811 | 3 | 731 | 0.0 | 939 |
| Msa1207940 | MtrunA17_Chr5g0441581 | 44.778 | 699 | 358 | 11 | 18 | 703 | 5 | 688 | 0.0 | 589 |
| Msa1207940 | MtrunA17_Chr2g0291581 | 38.750 | 560 | 324 | 9 | 48 | 602 | 77 | 622 | 4.04e-126 | 394 |
| Msa1207940 | MtrunA17_Chr1g0207551 | 31.926 | 758 | 450 | 13 | 45 | 768 | 37 | 762 | 3.32e-122 | 387 |
| Msa1207940 | MtrunA17_Chr2g0329031 | 35.654 | 589 | 346 | 11 | 48 | 627 | 20 | 584 | 1.17e-121 | 384 |
| Msa1207940 | MtrunA17_Chr5g0448761 | 37.303 | 571 | 336 | 12 | 45 | 601 | 63 | 625 | 4.42e-120 | 381 |
| Msa1207940 | MtrunA17_Chr3g0080351 | 35.246 | 610 | 342 | 11 | 38 | 627 | 70 | 646 | 3.53e-118 | 377 |
| Msa1207940 | MtrunA17_Chr1g0202341 | 36.713 | 572 | 333 | 12 | 45 | 602 | 54 | 610 | 1.58e-115 | 366 |
| Msa1207940 | MtrunA17_Chr2g0291591 | 35.259 | 502 | 318 | 4 | 18 | 515 | 39 | 537 | 2.80e-101 | 325 |
| Msa1207940 | MtrunA17_Chr5g0440451 | 33.119 | 622 | 360 | 17 | 44 | 636 | 45 | 639 | 8.70e-97 | 322 |
| Msa1207940 | MtrunA17_Chr5g0448511 | 37.000 | 400 | 242 | 6 | 199 | 596 | 1 | 392 | 9.48e-88 | 288 |
| Msa1207940 | MtrunA17_Chr8g0363841 | 31.100 | 582 | 366 | 7 | 38 | 601 | 13 | 577 | 3.59e-87 | 290 |
| Msa1207940 | MtrunA17_Chr3g0118611 | 37.947 | 419 | 244 | 8 | 206 | 622 | 113 | 517 | 8.16e-87 | 292 |
| Msa1207940 | MtrunA17_Chr2g0287061 | 33.565 | 575 | 303 | 16 | 44 | 599 | 185 | 699 | 2.46e-79 | 272 |
| Msa1207940 | MtrunA17_Chr6g0476441 | 51.379 | 290 | 98 | 5 | 541 | 788 | 1 | 289 | 3.44e-79 | 257 |
| Msa1207940 | MtrunA17_Chr2g0287651 | 29.525 | 569 | 369 | 10 | 48 | 601 | 81 | 632 | 5.47e-79 | 273 |
| Msa1207940 | MtrunA17_Chr1g0198761 | 29.487 | 702 | 433 | 21 | 38 | 707 | 43 | 714 | 1.25e-77 | 266 |
| Msa1207940 | MtrunA17_Chr2g0324011 | 29.289 | 577 | 379 | 11 | 39 | 601 | 7 | 568 | 2.44e-76 | 259 |
| Msa1207940 | MtrunA17_Chr1g0203051 | 29.305 | 604 | 384 | 15 | 6 | 582 | 29 | 616 | 3.60e-73 | 251 |
| Msa1207940 | MtrunA17_Chr2g0276841 | 27.703 | 592 | 354 | 15 | 44 | 598 | 72 | 626 | 2.59e-68 | 239 |
| Msa1207940 | MtrunA17_Chr3g0082121 | 31.074 | 605 | 365 | 19 | 20 | 601 | 15 | 590 | 9.98e-67 | 235 |
| Msa1207940 | MtrunA17_Chr1g0203721 | 28.448 | 580 | 376 | 13 | 42 | 601 | 63 | 623 | 1.00e-65 | 236 |
| Msa1207940 | MtrunA17_Chr6g0458391 | 27.598 | 587 | 386 | 14 | 26 | 601 | 207 | 765 | 2.43e-64 | 230 |
| Msa1207940 | MtrunA17_Chr2g0294841 | 27.116 | 579 | 376 | 13 | 44 | 597 | 47 | 604 | 3.50e-57 | 209 |
| Msa1207940 | MtrunA17_Chr5g0431001 | 31.455 | 426 | 262 | 11 | 45 | 447 | 64 | 482 | 7.85e-56 | 200 |
| Msa1207940 | MtrunA17_Chr2g0290391 | 26.460 | 582 | 379 | 19 | 44 | 599 | 53 | 611 | 1.93e-48 | 183 |
| Msa1207940 | MtrunA17_Chr1g0164591 | 34.650 | 329 | 173 | 10 | 120 | 429 | 3 | 308 | 2.07e-48 | 174 |
| Msa1207940 | MtrunA17_Chr7g0258861 | 32.168 | 286 | 181 | 5 | 39 | 314 | 7 | 289 | 1.73e-40 | 151 |
| Msa1207940 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 48 | 133 | 3 | 88 | 7.76e-32 | 119 |
| Msa1207940 | MtrunA17_Chr6g0451441 | 32.000 | 200 | 126 | 5 | 10 | 203 | 52 | 247 | 7.56e-20 | 93.6 |
| Msa1207940 | MtrunA17_Chr2g0308841 | 27.397 | 219 | 142 | 5 | 386 | 598 | 17 | 224 | 2.78e-16 | 79.7 |
| Msa1207940 | MtrunA17_Chr1g0172041 | 32.727 | 110 | 73 | 1 | 515 | 624 | 3 | 111 | 4.93e-16 | 74.7 |
| Msa1207940 | MtrunA17_Chr3g0077731 | 46.296 | 108 | 45 | 4 | 654 | 749 | 1 | 107 | 6.76e-13 | 66.2 |
| Msa1207940 | MtrunA17_Chr1g0149131 | 29.915 | 117 | 67 | 3 | 316 | 424 | 1 | 110 | 2.57e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207940 | AT4G15090.1 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207940 | AT4G15090.5 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207940 | AT4G15090.3 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207940 | AT4G15090.2 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207940 | AT4G15090.4 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207940 | AT1G76320.3 | 36.713 | 572 | 324 | 12 | 48 | 606 | 3 | 549 | 1.89e-118 | 373 |
| Msa1207940 | AT1G76320.2 | 36.713 | 572 | 324 | 12 | 48 | 606 | 3 | 549 | 2.35e-118 | 375 |
| Msa1207940 | AT1G76320.1 | 31.704 | 757 | 458 | 19 | 48 | 783 | 3 | 721 | 2.56e-118 | 375 |
| Msa1207940 | AT1G76320.4 | 31.704 | 757 | 458 | 19 | 48 | 783 | 3 | 721 | 2.56e-118 | 375 |
| Msa1207940 | AT4G38180.1 | 35.377 | 571 | 343 | 10 | 45 | 601 | 76 | 634 | 1.16e-114 | 367 |
| Msa1207940 | AT3G22170.2 | 33.910 | 578 | 335 | 6 | 45 | 604 | 73 | 621 | 9.43e-112 | 360 |
| Msa1207940 | AT3G22170.1 | 33.910 | 578 | 335 | 6 | 45 | 604 | 73 | 621 | 9.43e-112 | 360 |
| Msa1207940 | AT1G52520.1 | 33.929 | 672 | 392 | 18 | 9 | 643 | 37 | 693 | 1.06e-111 | 357 |
| Msa1207940 | AT1G80010.1 | 33.101 | 574 | 359 | 13 | 45 | 602 | 98 | 662 | 2.04e-99 | 325 |
| Msa1207940 | AT2G32250.6 | 34.103 | 563 | 317 | 9 | 41 | 598 | 37 | 550 | 7.40e-98 | 323 |
| Msa1207940 | AT2G32250.1 | 34.103 | 563 | 317 | 9 | 41 | 598 | 37 | 550 | 7.40e-98 | 323 |
| Msa1207940 | AT2G32250.3 | 34.103 | 563 | 317 | 9 | 41 | 598 | 37 | 550 | 7.40e-98 | 323 |
| Msa1207940 | AT2G32250.8 | 34.173 | 556 | 312 | 9 | 48 | 598 | 3 | 509 | 2.58e-97 | 320 |
| Msa1207940 | AT2G32250.7 | 34.173 | 556 | 312 | 9 | 48 | 598 | 3 | 509 | 2.73e-97 | 320 |
| Msa1207940 | AT4G19990.3 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 5.33e-96 | 317 |
| Msa1207940 | AT4G19990.4 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 5.33e-96 | 317 |
| Msa1207940 | AT4G19990.5 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 8.66e-96 | 316 |
| Msa1207940 | AT4G19990.6 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 1.02e-95 | 316 |
| Msa1207940 | AT4G19990.2 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 1.02e-95 | 316 |
| Msa1207940 | AT4G19990.7 | 34.578 | 616 | 332 | 17 | 37 | 627 | 28 | 597 | 1.17e-95 | 316 |
| Msa1207940 | AT2G27110.2 | 33.389 | 599 | 348 | 17 | 16 | 601 | 19 | 579 | 3.06e-90 | 303 |
| Msa1207940 | AT2G27110.1 | 33.389 | 599 | 348 | 17 | 16 | 601 | 19 | 579 | 3.06e-90 | 303 |
| Msa1207940 | AT4G19990.1 | 35.361 | 526 | 288 | 11 | 108 | 627 | 47 | 526 | 3.15e-90 | 300 |
| Msa1207940 | AT2G32250.5 | 38.021 | 384 | 226 | 4 | 218 | 598 | 176 | 550 | 5.74e-87 | 292 |
| Msa1207940 | AT2G32250.2 | 38.021 | 384 | 226 | 4 | 218 | 598 | 176 | 550 | 9.19e-87 | 293 |
| Msa1207940 | AT2G32250.4 | 38.021 | 384 | 226 | 4 | 218 | 598 | 176 | 550 | 9.19e-87 | 293 |
| Msa1207940 | AT2G27110.3 | 35.991 | 439 | 260 | 9 | 166 | 601 | 14 | 434 | 1.22e-86 | 290 |
| Msa1207940 | AT5G18960.2 | 31.250 | 560 | 335 | 14 | 44 | 599 | 213 | 726 | 5.48e-79 | 271 |
| Msa1207940 | AT5G18960.1 | 31.250 | 560 | 335 | 14 | 44 | 599 | 213 | 726 | 5.48e-79 | 271 |
| Msa1207940 | AT4G38170.1 | 34.937 | 395 | 245 | 6 | 213 | 605 | 19 | 403 | 7.99e-79 | 265 |
| Msa1207940 | AT3G06250.2 | 31.317 | 562 | 329 | 13 | 44 | 599 | 192 | 702 | 1.19e-78 | 270 |
| Msa1207940 | AT3G06250.1 | 31.317 | 562 | 329 | 13 | 44 | 599 | 192 | 702 | 1.19e-78 | 270 |
| Msa1207940 | AT3G06250.3 | 31.317 | 562 | 329 | 13 | 44 | 599 | 192 | 702 | 1.19e-78 | 270 |
| Msa1207940 | AT1G10240.2 | 28.525 | 610 | 357 | 20 | 28 | 598 | 35 | 604 | 3.11e-67 | 236 |
| Msa1207940 | AT1G10240.1 | 28.525 | 610 | 357 | 20 | 28 | 598 | 35 | 604 | 3.11e-67 | 236 |
| Msa1207940 | AT5G28530.3 | 25.514 | 584 | 382 | 13 | 44 | 599 | 57 | 615 | 2.61e-50 | 188 |
| Msa1207940 | AT5G28530.2 | 25.514 | 584 | 382 | 13 | 44 | 599 | 57 | 615 | 2.61e-50 | 188 |
| Msa1207940 | AT5G28530.1 | 25.680 | 588 | 380 | 16 | 44 | 599 | 57 | 619 | 6.03e-49 | 184 |
| Msa1207940 | AT5G28530.5 | 26.730 | 318 | 214 | 6 | 284 | 599 | 252 | 552 | 5.23e-27 | 117 |
| Msa1207940 | AT5G28530.4 | 26.730 | 318 | 218 | 6 | 284 | 599 | 252 | 556 | 6.77e-26 | 114 |
Find 108 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 8_1:+65791140 | None:intergenic |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 8_1:+65790136 | None:intergenic |
| CACCATCGATGACGAGCTTT+TGG | 0.216625 | 8_1:+65791598 | None:intergenic |
| GATCAAAACCACATTTAATA+AGG | 0.217528 | 8_1:+65790804 | None:intergenic |
| AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 8_1:-65791217 | Msa1207940:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 8_1:-65792445 | Msa1207940:CDS |
| ATAGCTTGTATAAGTCATTT+TGG | 0.245260 | 8_1:-65791178 | Msa1207940:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 8_1:-65792270 | Msa1207940:CDS |
| CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | 8_1:-65790896 | Msa1207940:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 8_1:+65792198 | None:intergenic |
| TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 8_1:-65791479 | Msa1207940:CDS |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.282511 | 8_1:+65790572 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 8_1:-65792438 | Msa1207940:CDS |
| CATATGTGAGAGACACGTTT+TGG | 0.314193 | 8_1:-65791366 | Msa1207940:CDS |
| AGGGCTGCATATGAATATTT+TGG | 0.330794 | 8_1:-65791865 | Msa1207940:CDS |
| ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | 8_1:-65790691 | Msa1207940:CDS |
| TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 8_1:-65791575 | Msa1207940:CDS |
| CTCAAAGTCTTTCTCATTGA+AGG | 0.344824 | 8_1:+65790973 | None:intergenic |
| TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | 8_1:-65791074 | Msa1207940:CDS |
| GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | 8_1:+65790643 | None:intergenic |
| CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 8_1:+65790573 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.377069 | 8_1:+65789984 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 8_1:+65790018 | None:intergenic |
| GCATGCACTCTAACCATGTT+TGG | 0.393751 | 8_1:+65791692 | None:intergenic |
| AATTAAAGATATAGTGTTTG+AGG | 0.408957 | 8_1:-65790999 | Msa1207940:CDS |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 8_1:+65792433 | None:intergenic |
| AAGGCCGTCCTCCTTCAAAA+AGG | 0.409918 | 8_1:-65790553 | Msa1207940:CDS |
| TCTGTCTTGATCAGTAATTA+TGG | 0.412747 | 8_1:+65791651 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 8_1:-65792017 | Msa1207940:CDS |
| TCATGGCCAATCTGTGTTGT+TGG | 0.420636 | 8_1:-65791764 | Msa1207940:CDS |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 8_1:-65790125 | Msa1207940:intron |
| TGATGGTTTACTCCAACAAA+TGG | 0.425908 | 8_1:+65791784 | None:intergenic |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 8_1:-65790012 | Msa1207940:CDS |
| ATCAAAACCACATTTAATAA+GGG | 0.445853 | 8_1:+65790805 | None:intergenic |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 8_1:+65790144 | None:intergenic |
| ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 8_1:-65791395 | Msa1207940:CDS |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 8_1:+65792434 | None:intergenic |
| GATGGTTTACTCCAACAAAT+GGG | 0.455733 | 8_1:+65791785 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 8_1:-65792061 | Msa1207940:CDS |
| CATGGCCAATCTGTGTTGTT+GGG | 0.456597 | 8_1:-65791763 | Msa1207940:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 8_1:-65790342 | Msa1207940:CDS |
| ATGATGATTTGTTTAAAATG+AGG | 0.460118 | 8_1:-65790697 | Msa1207940:CDS |
| TAAAATGAGGAATTGGATCA+AGG | 0.463705 | 8_1:-65790684 | Msa1207940:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 8_1:-65792069 | Msa1207940:CDS |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 8_1:-65791236 | Msa1207940:CDS |
| AGAGTGATTTCATGGAAAAG+TGG | 0.471372 | 8_1:-65791471 | Msa1207940:CDS |
| TGATCAGTAATTATGGCATT+CGG | 0.471610 | 8_1:+65791658 | None:intergenic |
| TGGCATTGTGGAAGAAGGTT+CGG | 0.472580 | 8_1:-65790624 | Msa1207940:CDS |
| TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 8_1:-65790938 | Msa1207940:CDS |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 8_1:+65790853 | None:intergenic |
| ACTCCAACAAATGGGGCAAA+AGG | 0.479062 | 8_1:+65791793 | None:intergenic |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 8_1:+65790145 | None:intergenic |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 8_1:-65791885 | Msa1207940:CDS |
| AGGATACTAAGTCCTTTACT+TGG | 0.489445 | 8_1:-65791720 | Msa1207940:CDS |
| GAACCTTCTTCCACAATGCC+AGG | 0.495148 | 8_1:+65790626 | None:intergenic |
| TCATGATAATGAATGGTTGA+AGG | 0.498087 | 8_1:-65791422 | Msa1207940:CDS |
| CATGATAATGAATGGTTGAA+GGG | 0.498314 | 8_1:-65791421 | Msa1207940:CDS |
| TTGAACTTCATGATAATGAA+TGG | 0.502013 | 8_1:-65791429 | Msa1207940:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 8_1:-65792444 | Msa1207940:CDS |
| CTCGTCATCGATGGTGTTTG+TGG | 0.503130 | 8_1:-65791591 | Msa1207940:CDS |
| ACAACACAGATTGGCCATGA+TGG | 0.504337 | 8_1:+65791767 | None:intergenic |
| ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | 8_1:-65790644 | Msa1207940:CDS |
| GAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 8_1:-65791470 | Msa1207940:CDS |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 8_1:-65791884 | Msa1207940:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 8_1:-65792012 | Msa1207940:CDS |
| ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | 8_1:-65791070 | Msa1207940:CDS |
| TCCCCTGGCATTGTGGAAGA+AGG | 0.525978 | 8_1:-65790629 | Msa1207940:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 8_1:-65792161 | Msa1207940:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.529351 | 8_1:-65792586 | Msa1207940:CDS |
| AACGTGTCTCTCACATATGC+AGG | 0.530851 | 8_1:+65791370 | None:intergenic |
| CCTATACCGACTCGAAGTAA+AGG | 0.531369 | 8_1:-65790572 | Msa1207940:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 8_1:-65792090 | Msa1207940:CDS |
| CACAGCCCAACAACACAGAT+TGG | 0.536074 | 8_1:+65791758 | None:intergenic |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 8_1:-65791116 | Msa1207940:CDS |
| TCCCAAAAGCTCGTCATCGA+TGG | 0.545629 | 8_1:-65791600 | Msa1207940:CDS |
| TTAGAACTTAATGATCAAGC+TGG | 0.546528 | 8_1:-65792138 | Msa1207940:CDS |
| GGGCTGTGCTTTATTGTCGA+AGG | 0.551617 | 8_1:-65791743 | Msa1207940:CDS |
| TTTGTTGGAGTAAACCATCA+TGG | 0.557125 | 8_1:-65791781 | Msa1207940:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 8_1:+65792199 | None:intergenic |
| AGACATACCCTTATTAAATG+TGG | 0.563948 | 8_1:-65790812 | Msa1207940:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.579861 | 8_1:-65792032 | Msa1207940:CDS |
| AACCTTCTTCCACAATGCCA+GGG | 0.580735 | 8_1:+65790627 | None:intergenic |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 8_1:+65790857 | None:intergenic |
| ACATGGTTAGAGTGCATGCA+TGG | 0.583025 | 8_1:-65791688 | Msa1207940:CDS |
| ATTCAATCTAGCCTTGCACT+TGG | 0.584905 | 8_1:+65792290 | None:intergenic |
| TTACTTGGTTATTCCAAACA+TGG | 0.586529 | 8_1:-65791705 | Msa1207940:CDS |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 8_1:-65790636 | Msa1207940:CDS |
| CTGTGCTTTATTGTCGAAGG+AGG | 0.593919 | 8_1:-65791740 | Msa1207940:CDS |
| CGTGTTATTGATGACGACAA+CGG | 0.597290 | 8_1:+65789854 | None:intergenic |
| TGTTTGGAATAACCAAGTAA+AGG | 0.602120 | 8_1:+65791708 | None:intergenic |
| GATGAAGAGGATATCAGAGA+AGG | 0.605305 | 8_1:-65792573 | Msa1207940:CDS |
| TGGATCAAAGTATGTGAGCA+AGG | 0.605574 | 8_1:-65792349 | Msa1207940:CDS |
| TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 8_1:-65791396 | Msa1207940:CDS |
| ATCCATGCAAAATGCAATTG+CGG | 0.608202 | 8_1:-65791629 | Msa1207940:CDS |
| ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 8_1:-65791420 | Msa1207940:CDS |
| TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 8_1:-65791227 | Msa1207940:CDS |
| CTTGTACTTTAGACGCACAC+AGG | 0.627505 | 8_1:+65790370 | None:intergenic |
| ACCTTCTTCCACAATGCCAG+GGG | 0.630026 | 8_1:+65790628 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 8_1:-65792016 | Msa1207940:CDS |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 8_1:-65791119 | Msa1207940:CDS |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 8_1:-65792018 | Msa1207940:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 8_1:-65790184 | Msa1207940:CDS |
| ATGGTTTACTCCAACAAATG+GGG | 0.652441 | 8_1:+65791786 | None:intergenic |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 8_1:-65792369 | Msa1207940:CDS |
| GGACGGCCTTTACTTCGAGT+CGG | 0.664200 | 8_1:+65790566 | None:intergenic |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 8_1:-65790465 | Msa1207940:intron |
| CTGTTAACTTAAGAACACAA+AGG | 0.666537 | 8_1:+65790897 | None:intergenic |
| ACGACAACGGATCATTCACA+TGG | 0.697567 | 8_1:+65789867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTCATATATGTTTTT+AGG | - | chr8_1:65792456-65792475 | Msa1207940:CDS | 10.0% |
| !!! | TTAATTCATATATGTTTTTA+GGG | - | chr8_1:65792457-65792476 | Msa1207940:CDS | 10.0% |
| !! | TAAGCATTAAATACAAATTT+AGG | + | chr8_1:65789984-65790003 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr8_1:65790061-65790080 | Msa1207940:intron | 15.0% |
| !!! | GTCTAATTTTCAATATTTAA+TGG | - | chr8_1:65792279-65792298 | Msa1207940:CDS | 15.0% |
| !!! | TAATTCATATATGTTTTTAG+GGG | - | chr8_1:65792458-65792477 | Msa1207940:CDS | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr8_1:65789864-65789883 | Msa1207940:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr8_1:65789953-65789972 | Msa1207940:intron | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr8_1:65790496-65790515 | Msa1207940:CDS | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | + | chr8_1:65791554-65791573 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | - | chr8_1:65791558-65791577 | Msa1207940:CDS | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | - | chr8_1:65791678-65791697 | Msa1207940:CDS | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | - | chr8_1:65791752-65791771 | Msa1207940:CDS | 20.0% |
| !! | ATCAAAACCACATTTAATAA+GGG | + | chr8_1:65791875-65791894 | None:intergenic | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | + | chr8_1:65791980-65791999 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | - | chr8_1:65791980-65791999 | Msa1207940:CDS | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | - | chr8_1:65791986-65792005 | Msa1207940:CDS | 20.0% |
| !!! | AATTTTCAATATTTAATGGC+AGG | - | chr8_1:65792283-65792302 | Msa1207940:CDS | 20.0% |
| !!! | ATTTTCAATATTTAATGGCA+GGG | - | chr8_1:65792284-65792303 | Msa1207940:CDS | 20.0% |
| !!! | AATTCATATATGTTTTTAGG+GGG | - | chr8_1:65792459-65792478 | Msa1207940:CDS | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr8_1:65792634-65792653 | Msa1207940:intron | 20.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr8_1:65789863-65789882 | Msa1207940:CDS | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr8_1:65790275-65790294 | Msa1207940:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr8_1:65790276-65790295 | Msa1207940:intron | 25.0% |
| !! | TGGTTTTTGTTAAAGGATTT+GGG | + | chr8_1:65790370-65790389 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTGTTAAAGGATT+TGG | + | chr8_1:65790371-65790390 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr8_1:65790407-65790426 | Msa1207940:intron | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr8_1:65790645-65790664 | Msa1207940:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | - | chr8_1:65791102-65791121 | Msa1207940:CDS | 25.0% |
| !! | TGTTTTCATAGACTCATAAT+CGG | + | chr8_1:65791152-65791171 | None:intergenic | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | - | chr8_1:65791248-65791267 | Msa1207940:CDS | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | - | chr8_1:65791281-65791300 | Msa1207940:CDS | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | - | chr8_1:65791282-65791301 | Msa1207940:CDS | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | - | chr8_1:65791441-65791460 | Msa1207940:CDS | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | - | chr8_1:65791450-65791469 | Msa1207940:CDS | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | - | chr8_1:65791499-65791518 | Msa1207940:CDS | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr8_1:65791739-65791758 | Msa1207940:CDS | 25.0% |
| ! | GATCAAAACCACATTTAATA+AGG | + | chr8_1:65791876-65791895 | None:intergenic | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr8_1:65792535-65792554 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr8_1:65792536-65792555 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | + | chr8_1:65792544-65792563 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr8_1:65792604-65792623 | Msa1207940:intron | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr8_1:65792609-65792628 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr8_1:65792646-65792665 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr8_1:65792662-65792681 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | - | chr8_1:65792691-65792710 | Msa1207940:intron | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | + | chr8_1:65792696-65792715 | None:intergenic | 25.0% |
| !! | ATAGTTTGATCAGTTGATGA+GGG | + | chr8_1:65789901-65789920 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr8_1:65790091-65790110 | Msa1207940:intron | 30.0% | |
| TCATGAAGATGAAAAACTTC+AGG | - | chr8_1:65790166-65790185 | Msa1207940:CDS | 30.0% | |
| !! | TTGCACTTGGTTTTTGTTAA+AGG | + | chr8_1:65790377-65790396 | None:intergenic | 30.0% |
| TTTAACAAAAACCAAGTGCA+AGG | - | chr8_1:65790376-65790395 | Msa1207940:intron | 30.0% | |
| TTAGAACTTAATGATCAAGC+TGG | - | chr8_1:65790539-65790558 | Msa1207940:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr8_1:65790571-65790590 | Msa1207940:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr8_1:65790616-65790635 | Msa1207940:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr8_1:65790775-65790794 | Msa1207940:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr8_1:65790972-65790991 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | - | chr8_1:65790972-65790991 | Msa1207940:CDS | 30.0% | |
| TGATCAGTAATTATGGCATT+CGG | + | chr8_1:65791022-65791041 | None:intergenic | 30.0% | |
| TCTGTCTTGATCAGTAATTA+TGG | + | chr8_1:65791029-65791048 | None:intergenic | 30.0% | |
| TTTGAGTAAGAGTGATTTCA+TGG | - | chr8_1:65791198-65791217 | Msa1207940:CDS | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | - | chr8_1:65791255-65791274 | Msa1207940:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | - | chr8_1:65791256-65791275 | Msa1207940:CDS | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | - | chr8_1:65791257-65791276 | Msa1207940:CDS | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | - | chr8_1:65791364-65791383 | Msa1207940:CDS | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | - | chr8_1:65791561-65791580 | Msa1207940:CDS | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | + | chr8_1:65791783-65791802 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | - | chr8_1:65791781-65791800 | Msa1207940:CDS | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | + | chr8_1:65791823-65791842 | None:intergenic | 30.0% | |
| AGACATACCCTTATTAAATG+TGG | - | chr8_1:65791865-65791884 | Msa1207940:CDS | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | - | chr8_1:65791883-65791902 | Msa1207940:CDS | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | - | chr8_1:65791993-65792012 | Msa1207940:CDS | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr8_1:65792138-65792157 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr8_1:65792199-65792218 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | - | chr8_1:65792552-65792571 | Msa1207940:CDS | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr8_1:65792665-65792684 | Msa1207940:intron | 30.0% | |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | - | chr8_1:65792780-65792799 | Msa1207940:intron | 30.0% |
| ATGGGTGATAACCCAATTTA+AGG | + | chr8_1:65789878-65789897 | None:intergenic | 35.0% | |
| ! | GATAGTTTGATCAGTTGATG+AGG | + | chr8_1:65789902-65789921 | None:intergenic | 35.0% |
| GAAGATGAAAAACTTCAGGT+TGG | - | chr8_1:65790170-65790189 | Msa1207940:CDS | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr8_1:65790233-65790252 | Msa1207940:intron | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr8_1:65790246-65790265 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr8_1:65790247-65790266 | None:intergenic | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr8_1:65790481-65790500 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr8_1:65790513-65790532 | Msa1207940:CDS | 35.0% |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr8_1:65790587-65790606 | Msa1207940:CDS | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | - | chr8_1:65790608-65790627 | Msa1207940:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr8_1:65790774-65790793 | Msa1207940:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr8_1:65790812-65790831 | Msa1207940:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | + | chr8_1:65790894-65790913 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr8_1:65790895-65790914 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr8_1:65790896-65790915 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr8_1:65790896-65790915 | Msa1207940:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr8_1:65790957-65790976 | Msa1207940:CDS | 35.0% | |
| ATCCATGCAAAATGCAATTG+CGG | - | chr8_1:65791048-65791067 | Msa1207940:CDS | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | + | chr8_1:65791130-65791149 | None:intergenic | 35.0% |
| AGAGTGATTTCATGGAAAAG+TGG | - | chr8_1:65791206-65791225 | Msa1207940:CDS | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | - | chr8_1:65791207-65791226 | Msa1207940:CDS | 35.0% | |
| ! | ATATGTGAGAGACACGTTTT+GGG | - | chr8_1:65791312-65791331 | Msa1207940:CDS | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | - | chr8_1:65791460-65791479 | Msa1207940:CDS | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | - | chr8_1:65791603-65791622 | Msa1207940:CDS | 35.0% |
| CTCAAAGTCTTTCTCATTGA+AGG | + | chr8_1:65791707-65791726 | None:intergenic | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | + | chr8_1:65791827-65791846 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | - | chr8_1:65791824-65791843 | Msa1207940:CDS | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | - | chr8_1:65791827-65791846 | Msa1207940:CDS | 35.0% |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | - | chr8_1:65791945-65791964 | Msa1207940:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr8_1:65792200-65792219 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr8_1:65792198-65792217 | Msa1207940:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr8_1:65792335-65792354 | Msa1207940:CDS | 35.0% |
| !! | TAGGGGGAACATATTAGTTT+TGG | - | chr8_1:65792475-65792494 | Msa1207940:CDS | 35.0% |
| !!! | AGGGGGAACATATTAGTTTT+GGG | - | chr8_1:65792476-65792495 | Msa1207940:CDS | 35.0% |
| !!! | CATATTAGTTTTGGGAGGAA+TGG | - | chr8_1:65792484-65792503 | Msa1207940:CDS | 35.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr8_1:65789896-65789915 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr8_1:65789897-65789916 | None:intergenic | 40.0% |
| GATGAAGAGGATATCAGAGA+AGG | - | chr8_1:65790104-65790123 | Msa1207940:intron | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr8_1:65790232-65790251 | Msa1207940:intron | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr8_1:65790239-65790258 | Msa1207940:intron | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr8_1:65790308-65790327 | Msa1207940:intron | 40.0% | |
| TGGATCAAAGTATGTGAGCA+AGG | - | chr8_1:65790328-65790347 | Msa1207940:CDS | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+TGG | + | chr8_1:65790390-65790409 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr8_1:65790482-65790501 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr8_1:65790524-65790543 | None:intergenic | 40.0% |
| ! | AACCGCAATTGCATTTTGCA+TGG | + | chr8_1:65791053-65791072 | None:intergenic | 40.0% |
| ! | CATATGTGAGAGACACGTTT+TGG | - | chr8_1:65791311-65791330 | Msa1207940:CDS | 40.0% |
| ! | TTGCATTGGTGAATGCTTTC+TGG | + | chr8_1:65791540-65791559 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | - | chr8_1:65791607-65791626 | Msa1207940:CDS | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | - | chr8_1:65791831-65791850 | Msa1207940:CDS | 40.0% |
| CTTTACTTCGAGTCGGTATA+GGG | + | chr8_1:65792107-65792126 | None:intergenic | 40.0% | |
| !! | ACTTCCTTTTTGAAGGAGGA+CGG | + | chr8_1:65792131-65792150 | None:intergenic | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr8_1:65792135-65792154 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | - | chr8_1:65792212-65792231 | Msa1207940:CDS | 40.0% | |
| !!! | GGGAACATATTAGTTTTGGG+AGG | - | chr8_1:65792479-65792498 | Msa1207940:CDS | 40.0% |
| !! | CGTGTTATTGATGACGACAA+CGG | + | chr8_1:65792826-65792845 | None:intergenic | 40.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr8_1:65790516-65790535 | Msa1207940:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr8_1:65790659-65790678 | Msa1207940:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr8_1:65790660-65790679 | Msa1207940:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr8_1:65790881-65790900 | Msa1207940:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr8_1:65790887-65790906 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr8_1:65790913-65790932 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr8_1:65790913-65790932 | Msa1207940:CDS | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr8_1:65790914-65790933 | Msa1207940:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | - | chr8_1:65790937-65790956 | Msa1207940:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | + | chr8_1:65790988-65791007 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr8_1:65790989-65791008 | Msa1207940:CDS | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | + | chr8_1:65791081-65791100 | None:intergenic | 45.0% |
| AACGTGTCTCTCACATATGC+AGG | + | chr8_1:65791310-65791329 | None:intergenic | 45.0% | |
| AACCTTCTTCCACAATGCCA+GGG | + | chr8_1:65792053-65792072 | None:intergenic | 45.0% | |
| TGGCATTGTGGAAGAAGGTT+CGG | - | chr8_1:65792053-65792072 | Msa1207940:CDS | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | + | chr8_1:65792108-65792127 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | - | chr8_1:65792105-65792124 | Msa1207940:CDS | 45.0% |
| CTTGTACTTTAGACGCACAC+AGG | + | chr8_1:65792310-65792329 | None:intergenic | 45.0% | |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr8_1:65792490-65792509 | Msa1207940:CDS | 45.0% |
| ACGACAACGGATCATTCACA+TGG | + | chr8_1:65792813-65792832 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr8_1:65790661-65790680 | Msa1207940:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr8_1:65790792-65790811 | Msa1207940:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr8_1:65790793-65790812 | Msa1207940:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | + | chr8_1:65790922-65790941 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | - | chr8_1:65790934-65790953 | Msa1207940:CDS | 50.0% |
| TCCCAAAAGCTCGTCATCGA+TGG | - | chr8_1:65791077-65791096 | Msa1207940:CDS | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | + | chr8_1:65791082-65791101 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | - | chr8_1:65791086-65791105 | Msa1207940:CDS | 50.0% | |
| !! | TGTGAGAGACACGTTTTGGG+CGG | - | chr8_1:65791315-65791334 | Msa1207940:CDS | 50.0% |
| !! | ACCTCTAAAGAAGCATCCCC+TGG | - | chr8_1:65792033-65792052 | Msa1207940:CDS | 50.0% |
| ACCTTCTTCCACAATGCCAG+GGG | + | chr8_1:65792052-65792071 | None:intergenic | 50.0% | |
| GAACCTTCTTCCACAATGCC+AGG | + | chr8_1:65792054-65792073 | None:intergenic | 50.0% | |
| AAGGCCGTCCTCCTTCAAAA+AGG | - | chr8_1:65792124-65792143 | Msa1207940:CDS | 50.0% | |
| TTTGGGAGGAATGGACATGG+TGG | - | chr8_1:65792493-65792512 | Msa1207940:CDS | 50.0% | |
| !! | GTGAGAGACACGTTTTGGGC+GGG | - | chr8_1:65791316-65791335 | Msa1207940:CDS | 55.0% |
| GCCAGGGGATGCTTCTTTAG+AGG | + | chr8_1:65792037-65792056 | None:intergenic | 55.0% | |
| !! | AGAAGCATCCCCTGGCATTG+TGG | - | chr8_1:65792041-65792060 | Msa1207940:CDS | 55.0% |
| TCCCCTGGCATTGTGGAAGA+AGG | - | chr8_1:65792048-65792067 | Msa1207940:CDS | 55.0% | |
| GGACGGCCTTTACTTCGAGT+CGG | + | chr8_1:65792114-65792133 | None:intergenic | 55.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr8_1:65790665-65790684 | Msa1207940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 65789841 | 65792858 | 65789841 | ID=Msa1207940;Name=Msa1207940 |
| chr8_1 | mRNA | 65789841 | 65792858 | 65789841 | ID=Msa1207940-mRNA-1;Parent=Msa1207940;Name=Msa1207940-mRNA-1;_AED=0.25;_eAED=0.04;_QI=0|0.6|0.16|1|1|1|6|0|818 |
| chr8_1 | exon | 65792837 | 65792858 | 65792837 | ID=Msa1207940-mRNA-1:exon:21636;Parent=Msa1207940-mRNA-1 |
| chr8_1 | exon | 65790466 | 65792618 | 65790466 | ID=Msa1207940-mRNA-1:exon:21635;Parent=Msa1207940-mRNA-1 |
| chr8_1 | exon | 65790323 | 65790394 | 65790323 | ID=Msa1207940-mRNA-1:exon:21634;Parent=Msa1207940-mRNA-1 |
| chr8_1 | exon | 65790126 | 65790221 | 65790126 | ID=Msa1207940-mRNA-1:exon:21633;Parent=Msa1207940-mRNA-1 |
| chr8_1 | exon | 65789987 | 65790043 | 65789987 | ID=Msa1207940-mRNA-1:exon:21632;Parent=Msa1207940-mRNA-1 |
| chr8_1 | exon | 65789841 | 65789897 | 65789841 | ID=Msa1207940-mRNA-1:exon:21631;Parent=Msa1207940-mRNA-1 |
| chr8_1 | CDS | 65792837 | 65792858 | 65792837 | ID=Msa1207940-mRNA-1:cds;Parent=Msa1207940-mRNA-1 |
| chr8_1 | CDS | 65790466 | 65792618 | 65790466 | ID=Msa1207940-mRNA-1:cds;Parent=Msa1207940-mRNA-1 |
| chr8_1 | CDS | 65790323 | 65790394 | 65790323 | ID=Msa1207940-mRNA-1:cds;Parent=Msa1207940-mRNA-1 |
| chr8_1 | CDS | 65790126 | 65790221 | 65790126 | ID=Msa1207940-mRNA-1:cds;Parent=Msa1207940-mRNA-1 |
| chr8_1 | CDS | 65789987 | 65790043 | 65789987 | ID=Msa1207940-mRNA-1:cds;Parent=Msa1207940-mRNA-1 |
| chr8_1 | CDS | 65789841 | 65789897 | 65789841 | ID=Msa1207940-mRNA-1:cds;Parent=Msa1207940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
