Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207930 | GAU40839.1 | 69.373 | 813 | 219 | 7 | 7 | 805 | 29 | 825 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207930 | sp|Q9SWG3|FAR1_ARATH | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.64e-125 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1207930 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0205820 | Msa1207930 | 0.802059 | 6.715096e-49 | -8.615850e-47 |
| Msa1207930 | Msa1207940 | 0.941394 | 4.487878e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207930 | MtrunA17_Chr2g0296781 | 73.109 | 714 | 179 | 5 | 48 | 749 | 3 | 715 | 0.0 | 1090 |
| Msa1207930 | MtrunA17_Chr6g0477261 | 71.252 | 647 | 163 | 5 | 157 | 781 | 1 | 646 | 0.0 | 956 |
| Msa1207930 | MtrunA17_Chr1g0196541 | 60.598 | 769 | 258 | 6 | 48 | 811 | 3 | 731 | 0.0 | 939 |
| Msa1207930 | MtrunA17_Chr5g0441581 | 44.778 | 699 | 358 | 11 | 18 | 703 | 5 | 688 | 0.0 | 589 |
| Msa1207930 | MtrunA17_Chr2g0291581 | 38.750 | 560 | 324 | 9 | 48 | 602 | 77 | 622 | 4.04e-126 | 394 |
| Msa1207930 | MtrunA17_Chr1g0207551 | 31.926 | 758 | 450 | 13 | 45 | 768 | 37 | 762 | 3.32e-122 | 387 |
| Msa1207930 | MtrunA17_Chr2g0329031 | 35.654 | 589 | 346 | 11 | 48 | 627 | 20 | 584 | 1.17e-121 | 384 |
| Msa1207930 | MtrunA17_Chr5g0448761 | 37.303 | 571 | 336 | 12 | 45 | 601 | 63 | 625 | 4.42e-120 | 381 |
| Msa1207930 | MtrunA17_Chr3g0080351 | 35.246 | 610 | 342 | 11 | 38 | 627 | 70 | 646 | 3.53e-118 | 377 |
| Msa1207930 | MtrunA17_Chr1g0202341 | 36.713 | 572 | 333 | 12 | 45 | 602 | 54 | 610 | 1.58e-115 | 366 |
| Msa1207930 | MtrunA17_Chr2g0291591 | 35.259 | 502 | 318 | 4 | 18 | 515 | 39 | 537 | 2.80e-101 | 325 |
| Msa1207930 | MtrunA17_Chr5g0440451 | 33.119 | 622 | 360 | 17 | 44 | 636 | 45 | 639 | 8.70e-97 | 322 |
| Msa1207930 | MtrunA17_Chr5g0448511 | 37.000 | 400 | 242 | 6 | 199 | 596 | 1 | 392 | 9.48e-88 | 288 |
| Msa1207930 | MtrunA17_Chr8g0363841 | 31.100 | 582 | 366 | 7 | 38 | 601 | 13 | 577 | 3.59e-87 | 290 |
| Msa1207930 | MtrunA17_Chr3g0118611 | 37.947 | 419 | 244 | 8 | 206 | 622 | 113 | 517 | 8.16e-87 | 292 |
| Msa1207930 | MtrunA17_Chr2g0287061 | 33.565 | 575 | 303 | 16 | 44 | 599 | 185 | 699 | 2.46e-79 | 272 |
| Msa1207930 | MtrunA17_Chr6g0476441 | 51.379 | 290 | 98 | 5 | 541 | 788 | 1 | 289 | 3.44e-79 | 257 |
| Msa1207930 | MtrunA17_Chr2g0287651 | 29.525 | 569 | 369 | 10 | 48 | 601 | 81 | 632 | 5.47e-79 | 273 |
| Msa1207930 | MtrunA17_Chr1g0198761 | 29.487 | 702 | 433 | 21 | 38 | 707 | 43 | 714 | 1.25e-77 | 266 |
| Msa1207930 | MtrunA17_Chr2g0324011 | 29.289 | 577 | 379 | 11 | 39 | 601 | 7 | 568 | 2.44e-76 | 259 |
| Msa1207930 | MtrunA17_Chr1g0203051 | 29.305 | 604 | 384 | 15 | 6 | 582 | 29 | 616 | 3.60e-73 | 251 |
| Msa1207930 | MtrunA17_Chr2g0276841 | 27.703 | 592 | 354 | 15 | 44 | 598 | 72 | 626 | 2.59e-68 | 239 |
| Msa1207930 | MtrunA17_Chr3g0082121 | 31.074 | 605 | 365 | 19 | 20 | 601 | 15 | 590 | 9.98e-67 | 235 |
| Msa1207930 | MtrunA17_Chr1g0203721 | 28.448 | 580 | 376 | 13 | 42 | 601 | 63 | 623 | 1.00e-65 | 236 |
| Msa1207930 | MtrunA17_Chr6g0458391 | 27.598 | 587 | 386 | 14 | 26 | 601 | 207 | 765 | 2.43e-64 | 230 |
| Msa1207930 | MtrunA17_Chr2g0294841 | 27.116 | 579 | 376 | 13 | 44 | 597 | 47 | 604 | 3.50e-57 | 209 |
| Msa1207930 | MtrunA17_Chr5g0431001 | 31.455 | 426 | 262 | 11 | 45 | 447 | 64 | 482 | 7.85e-56 | 200 |
| Msa1207930 | MtrunA17_Chr2g0290391 | 26.460 | 582 | 379 | 19 | 44 | 599 | 53 | 611 | 1.93e-48 | 183 |
| Msa1207930 | MtrunA17_Chr1g0164591 | 34.650 | 329 | 173 | 10 | 120 | 429 | 3 | 308 | 2.07e-48 | 174 |
| Msa1207930 | MtrunA17_Chr7g0258861 | 32.168 | 286 | 181 | 5 | 39 | 314 | 7 | 289 | 1.73e-40 | 151 |
| Msa1207930 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 48 | 133 | 3 | 88 | 7.76e-32 | 119 |
| Msa1207930 | MtrunA17_Chr6g0451441 | 32.000 | 200 | 126 | 5 | 10 | 203 | 52 | 247 | 7.56e-20 | 93.6 |
| Msa1207930 | MtrunA17_Chr2g0308841 | 27.397 | 219 | 142 | 5 | 386 | 598 | 17 | 224 | 2.78e-16 | 79.7 |
| Msa1207930 | MtrunA17_Chr1g0172041 | 32.727 | 110 | 73 | 1 | 515 | 624 | 3 | 111 | 4.93e-16 | 74.7 |
| Msa1207930 | MtrunA17_Chr3g0077731 | 46.296 | 108 | 45 | 4 | 654 | 749 | 1 | 107 | 6.76e-13 | 66.2 |
| Msa1207930 | MtrunA17_Chr1g0149131 | 29.915 | 117 | 67 | 3 | 316 | 424 | 1 | 110 | 2.57e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207930 | AT4G15090.1 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207930 | AT4G15090.5 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207930 | AT4G15090.3 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207930 | AT4G15090.2 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207930 | AT4G15090.4 | 31.874 | 731 | 462 | 12 | 45 | 768 | 54 | 755 | 5.73e-126 | 398 |
| Msa1207930 | AT1G76320.3 | 36.713 | 572 | 324 | 12 | 48 | 606 | 3 | 549 | 1.89e-118 | 373 |
| Msa1207930 | AT1G76320.2 | 36.713 | 572 | 324 | 12 | 48 | 606 | 3 | 549 | 2.35e-118 | 375 |
| Msa1207930 | AT1G76320.1 | 31.704 | 757 | 458 | 19 | 48 | 783 | 3 | 721 | 2.56e-118 | 375 |
| Msa1207930 | AT1G76320.4 | 31.704 | 757 | 458 | 19 | 48 | 783 | 3 | 721 | 2.56e-118 | 375 |
| Msa1207930 | AT4G38180.1 | 35.377 | 571 | 343 | 10 | 45 | 601 | 76 | 634 | 1.16e-114 | 367 |
| Msa1207930 | AT3G22170.2 | 33.910 | 578 | 335 | 6 | 45 | 604 | 73 | 621 | 9.43e-112 | 360 |
| Msa1207930 | AT3G22170.1 | 33.910 | 578 | 335 | 6 | 45 | 604 | 73 | 621 | 9.43e-112 | 360 |
| Msa1207930 | AT1G52520.1 | 33.929 | 672 | 392 | 18 | 9 | 643 | 37 | 693 | 1.06e-111 | 357 |
| Msa1207930 | AT1G80010.1 | 33.101 | 574 | 359 | 13 | 45 | 602 | 98 | 662 | 2.04e-99 | 325 |
| Msa1207930 | AT2G32250.6 | 34.103 | 563 | 317 | 9 | 41 | 598 | 37 | 550 | 7.40e-98 | 323 |
| Msa1207930 | AT2G32250.1 | 34.103 | 563 | 317 | 9 | 41 | 598 | 37 | 550 | 7.40e-98 | 323 |
| Msa1207930 | AT2G32250.3 | 34.103 | 563 | 317 | 9 | 41 | 598 | 37 | 550 | 7.40e-98 | 323 |
| Msa1207930 | AT2G32250.8 | 34.173 | 556 | 312 | 9 | 48 | 598 | 3 | 509 | 2.58e-97 | 320 |
| Msa1207930 | AT2G32250.7 | 34.173 | 556 | 312 | 9 | 48 | 598 | 3 | 509 | 2.73e-97 | 320 |
| Msa1207930 | AT4G19990.3 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 5.33e-96 | 317 |
| Msa1207930 | AT4G19990.4 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 5.33e-96 | 317 |
| Msa1207930 | AT4G19990.5 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 8.66e-96 | 316 |
| Msa1207930 | AT4G19990.6 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 1.02e-95 | 316 |
| Msa1207930 | AT4G19990.2 | 34.578 | 616 | 332 | 17 | 37 | 627 | 14 | 583 | 1.02e-95 | 316 |
| Msa1207930 | AT4G19990.7 | 34.578 | 616 | 332 | 17 | 37 | 627 | 28 | 597 | 1.17e-95 | 316 |
| Msa1207930 | AT2G27110.2 | 33.389 | 599 | 348 | 17 | 16 | 601 | 19 | 579 | 3.06e-90 | 303 |
| Msa1207930 | AT2G27110.1 | 33.389 | 599 | 348 | 17 | 16 | 601 | 19 | 579 | 3.06e-90 | 303 |
| Msa1207930 | AT4G19990.1 | 35.361 | 526 | 288 | 11 | 108 | 627 | 47 | 526 | 3.15e-90 | 300 |
| Msa1207930 | AT2G32250.5 | 38.021 | 384 | 226 | 4 | 218 | 598 | 176 | 550 | 5.74e-87 | 292 |
| Msa1207930 | AT2G32250.2 | 38.021 | 384 | 226 | 4 | 218 | 598 | 176 | 550 | 9.19e-87 | 293 |
| Msa1207930 | AT2G32250.4 | 38.021 | 384 | 226 | 4 | 218 | 598 | 176 | 550 | 9.19e-87 | 293 |
| Msa1207930 | AT2G27110.3 | 35.991 | 439 | 260 | 9 | 166 | 601 | 14 | 434 | 1.22e-86 | 290 |
| Msa1207930 | AT5G18960.2 | 31.250 | 560 | 335 | 14 | 44 | 599 | 213 | 726 | 5.48e-79 | 271 |
| Msa1207930 | AT5G18960.1 | 31.250 | 560 | 335 | 14 | 44 | 599 | 213 | 726 | 5.48e-79 | 271 |
| Msa1207930 | AT4G38170.1 | 34.937 | 395 | 245 | 6 | 213 | 605 | 19 | 403 | 7.99e-79 | 265 |
| Msa1207930 | AT3G06250.2 | 31.317 | 562 | 329 | 13 | 44 | 599 | 192 | 702 | 1.19e-78 | 270 |
| Msa1207930 | AT3G06250.1 | 31.317 | 562 | 329 | 13 | 44 | 599 | 192 | 702 | 1.19e-78 | 270 |
| Msa1207930 | AT3G06250.3 | 31.317 | 562 | 329 | 13 | 44 | 599 | 192 | 702 | 1.19e-78 | 270 |
| Msa1207930 | AT1G10240.2 | 28.525 | 610 | 357 | 20 | 28 | 598 | 35 | 604 | 3.11e-67 | 236 |
| Msa1207930 | AT1G10240.1 | 28.525 | 610 | 357 | 20 | 28 | 598 | 35 | 604 | 3.11e-67 | 236 |
| Msa1207930 | AT5G28530.3 | 25.514 | 584 | 382 | 13 | 44 | 599 | 57 | 615 | 2.61e-50 | 188 |
| Msa1207930 | AT5G28530.2 | 25.514 | 584 | 382 | 13 | 44 | 599 | 57 | 615 | 2.61e-50 | 188 |
| Msa1207930 | AT5G28530.1 | 25.680 | 588 | 380 | 16 | 44 | 599 | 57 | 619 | 6.03e-49 | 184 |
| Msa1207930 | AT5G28530.5 | 26.730 | 318 | 214 | 6 | 284 | 599 | 252 | 552 | 5.23e-27 | 117 |
| Msa1207930 | AT5G28530.4 | 26.730 | 318 | 218 | 6 | 284 | 599 | 252 | 556 | 6.77e-26 | 114 |
Find 108 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 8_1:-65782387 | None:intergenic |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 8_1:-65783391 | None:intergenic |
| CACCATCGATGACGAGCTTT+TGG | 0.216625 | 8_1:-65781929 | None:intergenic |
| GATCAAAACCACATTTAATA+AGG | 0.217528 | 8_1:-65782723 | None:intergenic |
| AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 8_1:+65782310 | Msa1207930:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 8_1:+65781082 | Msa1207930:CDS |
| ATAGCTTGTATAAGTCATTT+TGG | 0.245260 | 8_1:+65782349 | Msa1207930:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 8_1:+65781257 | Msa1207930:CDS |
| CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | 8_1:+65782631 | Msa1207930:CDS |
| TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 8_1:+65782048 | Msa1207930:CDS |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.282511 | 8_1:-65782955 | None:intergenic |
| CTAAAATAGCGCGCTTTGTC+AGG | 0.283823 | 8_1:-65781329 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 8_1:+65781089 | Msa1207930:CDS |
| CATATGTGAGAGACACGTTT+TGG | 0.314193 | 8_1:+65782161 | Msa1207930:CDS |
| AGGGCTGCATATGAATATTT+TGG | 0.330794 | 8_1:+65781662 | Msa1207930:CDS |
| ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | 8_1:+65782836 | Msa1207930:CDS |
| TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 8_1:+65781952 | Msa1207930:CDS |
| CTCAAAGTCTTTCTCATTGA+AGG | 0.344824 | 8_1:-65782554 | None:intergenic |
| TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | 8_1:+65782453 | Msa1207930:CDS |
| GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | 8_1:-65782884 | None:intergenic |
| CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 8_1:-65782954 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.377069 | 8_1:-65783543 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 8_1:-65783509 | None:intergenic |
| GCATGCACTCTAACCATGTT+TGG | 0.393751 | 8_1:-65781835 | None:intergenic |
| AATTAAAGATATAGTGTTTG+AGG | 0.408957 | 8_1:+65782528 | Msa1207930:CDS |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 8_1:-65781094 | None:intergenic |
| AAGGCCGTCCTCCTTCAAAA+AGG | 0.409918 | 8_1:+65782974 | Msa1207930:CDS |
| TCTGTCTTGATCAGTAATTA+TGG | 0.412747 | 8_1:-65781876 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 8_1:+65781510 | Msa1207930:CDS |
| TCATGGCCAATCTGTGTTGT+TGG | 0.420636 | 8_1:+65781763 | Msa1207930:CDS |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 8_1:+65783402 | Msa1207930:CDS |
| TGATGGTTTACTCCAACAAA+TGG | 0.425908 | 8_1:-65781743 | None:intergenic |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 8_1:+65783515 | Msa1207930:CDS |
| ATCAAAACCACATTTAATAA+GGG | 0.445853 | 8_1:-65782722 | None:intergenic |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 8_1:-65783383 | None:intergenic |
| ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 8_1:+65782132 | Msa1207930:CDS |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 8_1:-65781093 | None:intergenic |
| GATGGTTTACTCCAACAAAT+GGG | 0.455733 | 8_1:-65781742 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 8_1:+65781466 | Msa1207930:CDS |
| CATGGCCAATCTGTGTTGTT+GGG | 0.456597 | 8_1:+65781764 | Msa1207930:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 8_1:+65783185 | Msa1207930:CDS |
| ATGATGATTTGTTTAAAATG+AGG | 0.460118 | 8_1:+65782830 | Msa1207930:CDS |
| TAAAATGAGGAATTGGATCA+AGG | 0.463705 | 8_1:+65782843 | Msa1207930:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 8_1:+65781458 | Msa1207930:CDS |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 8_1:+65782291 | Msa1207930:CDS |
| AGAGTGATTTCATGGAAAAG+TGG | 0.471372 | 8_1:+65782056 | Msa1207930:CDS |
| TGATCAGTAATTATGGCATT+CGG | 0.471610 | 8_1:-65781869 | None:intergenic |
| TGGCATTGTGGAAGAAGGTT+CGG | 0.472580 | 8_1:+65782903 | Msa1207930:CDS |
| TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 8_1:+65782589 | Msa1207930:CDS |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 8_1:-65782674 | None:intergenic |
| ACTCCAACAAATGGGGCAAA+AGG | 0.479062 | 8_1:-65781734 | None:intergenic |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 8_1:-65783382 | None:intergenic |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 8_1:+65781642 | Msa1207930:CDS |
| AGGATACTAAGTCCTTTACT+TGG | 0.489445 | 8_1:+65781807 | Msa1207930:CDS |
| GAACCTTCTTCCACAATGCC+AGG | 0.495148 | 8_1:-65782901 | None:intergenic |
| TCATGATAATGAATGGTTGA+AGG | 0.498087 | 8_1:+65782105 | Msa1207930:CDS |
| CATGATAATGAATGGTTGAA+GGG | 0.498314 | 8_1:+65782106 | Msa1207930:CDS |
| TTGAACTTCATGATAATGAA+TGG | 0.502013 | 8_1:+65782098 | Msa1207930:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 8_1:+65781083 | Msa1207930:CDS |
| CTCGTCATCGATGGTGTTTG+TGG | 0.503130 | 8_1:+65781936 | Msa1207930:CDS |
| ACAACACAGATTGGCCATGA+TGG | 0.504337 | 8_1:-65781760 | None:intergenic |
| ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | 8_1:+65782883 | Msa1207930:CDS |
| GAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 8_1:+65782057 | Msa1207930:CDS |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 8_1:+65781643 | Msa1207930:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 8_1:+65781515 | Msa1207930:CDS |
| ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | 8_1:+65782457 | Msa1207930:CDS |
| TCCCCTGGCATTGTGGAAGA+AGG | 0.525978 | 8_1:+65782898 | Msa1207930:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 8_1:+65781366 | Msa1207930:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.529351 | 8_1:+65780941 | Msa1207930:CDS |
| AACGTGTCTCTCACATATGC+AGG | 0.530851 | 8_1:-65782157 | None:intergenic |
| CCTATACCGACTCGAAGTAA+AGG | 0.531369 | 8_1:+65782955 | Msa1207930:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 8_1:+65781437 | Msa1207930:CDS |
| CACAGCCCAACAACACAGAT+TGG | 0.536074 | 8_1:-65781769 | None:intergenic |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 8_1:+65782411 | Msa1207930:CDS |
| TCCCAAAAGCTCGTCATCGA+TGG | 0.545629 | 8_1:+65781927 | Msa1207930:CDS |
| TTAGAACTTAATGATCAAGC+TGG | 0.546528 | 8_1:+65781389 | Msa1207930:CDS |
| GGGCTGTGCTTTATTGTCGA+AGG | 0.551617 | 8_1:+65781784 | Msa1207930:CDS |
| TTTGTTGGAGTAAACCATCA+TGG | 0.557125 | 8_1:+65781746 | Msa1207930:CDS |
| TAAAATAGCGCGCTTTGTCA+GGG | 0.560993 | 8_1:-65781328 | None:intergenic |
| AGACATACCCTTATTAAATG+TGG | 0.563948 | 8_1:+65782715 | Msa1207930:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.579861 | 8_1:+65781495 | Msa1207930:CDS |
| AACCTTCTTCCACAATGCCA+GGG | 0.580735 | 8_1:-65782900 | None:intergenic |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 8_1:-65782670 | None:intergenic |
| ACATGGTTAGAGTGCATGCA+TGG | 0.583025 | 8_1:+65781839 | Msa1207930:CDS |
| ATTCAATCTAGCCTTGCACT+TGG | 0.584905 | 8_1:-65781237 | None:intergenic |
| TTACTTGGTTATTCCAAACA+TGG | 0.586529 | 8_1:+65781822 | Msa1207930:CDS |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 8_1:+65782891 | Msa1207930:CDS |
| CTGTGCTTTATTGTCGAAGG+AGG | 0.593919 | 8_1:+65781787 | Msa1207930:CDS |
| CGTGTTATTGATGACGACAA+CGG | 0.597290 | 8_1:-65783673 | None:intergenic |
| TGTTTGGAATAACCAAGTAA+AGG | 0.602120 | 8_1:-65781819 | None:intergenic |
| GATGAAGAGGATATCAGAGA+AGG | 0.605305 | 8_1:+65780954 | Msa1207930:CDS |
| TGGATCAAAGTATGTGAGCA+AGG | 0.605574 | 8_1:+65781178 | Msa1207930:CDS |
| TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 8_1:+65782131 | Msa1207930:CDS |
| ATCCATGCAAAATGCAATTG+CGG | 0.608202 | 8_1:+65781898 | Msa1207930:CDS |
| ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 8_1:+65782107 | Msa1207930:CDS |
| TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 8_1:+65782300 | Msa1207930:CDS |
| CTTGTACTTTAGACGCACAC+AGG | 0.627505 | 8_1:-65783157 | None:intergenic |
| ACCTTCTTCCACAATGCCAG+GGG | 0.630026 | 8_1:-65782899 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 8_1:+65781511 | Msa1207930:CDS |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 8_1:+65782408 | Msa1207930:CDS |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 8_1:+65781509 | Msa1207930:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 8_1:+65783343 | Msa1207930:CDS |
| ATGGTTTACTCCAACAAATG+GGG | 0.652441 | 8_1:-65781741 | None:intergenic |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 8_1:+65781158 | Msa1207930:CDS |
| GGACGGCCTTTACTTCGAGT+CGG | 0.664200 | 8_1:-65782961 | None:intergenic |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 8_1:+65783062 | Msa1207930:CDS |
| CTGTTAACTTAAGAACACAA+AGG | 0.666537 | 8_1:-65782630 | None:intergenic |
| ACGACAACGGATCATTCACA+TGG | 0.697567 | 8_1:-65783660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTCATATATGTTTTT+AGG | + | chr8_1:65783306-65783325 | Msa1207930:intron | 10.0% |
| !!! | TTAATTCATATATGTTTTTA+GGG | + | chr8_1:65783307-65783326 | Msa1207930:intron | 10.0% |
| !! | TAAGCATTAAATACAAATTT+AGG | - | chr8_1:65780831-65780850 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | + | chr8_1:65780911-65780930 | Msa1207930:intron | 15.0% |
| !!! | GTCTAATTTTCAATATTTAA+TGG | + | chr8_1:65783129-65783148 | Msa1207930:intron | 15.0% |
| !!! | TAATTCATATATGTTTTTAG+GGG | + | chr8_1:65783308-65783327 | Msa1207930:intron | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | + | chr8_1:65780711-65780730 | Msa1207930:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | chr8_1:65780800-65780819 | Msa1207930:intron | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | chr8_1:65781346-65781365 | Msa1207930:CDS | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | - | chr8_1:65782404-65782423 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | + | chr8_1:65782408-65782427 | Msa1207930:CDS | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | + | chr8_1:65782528-65782547 | Msa1207930:CDS | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | + | chr8_1:65782602-65782621 | Msa1207930:CDS | 20.0% |
| !! | ATCAAAACCACATTTAATAA+GGG | - | chr8_1:65782725-65782744 | None:intergenic | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | - | chr8_1:65782830-65782849 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | + | chr8_1:65782830-65782849 | Msa1207930:CDS | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | + | chr8_1:65782836-65782855 | Msa1207930:CDS | 20.0% |
| !!! | AATTTTCAATATTTAATGGC+AGG | + | chr8_1:65783133-65783152 | Msa1207930:intron | 20.0% |
| !!! | ATTTTCAATATTTAATGGCA+GGG | + | chr8_1:65783134-65783153 | Msa1207930:intron | 20.0% |
| !!! | AATTCATATATGTTTTTAGG+GGG | + | chr8_1:65783309-65783328 | Msa1207930:intron | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | + | chr8_1:65783484-65783503 | Msa1207930:intron | 20.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | + | chr8_1:65780710-65780729 | Msa1207930:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | chr8_1:65781125-65781144 | Msa1207930:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | chr8_1:65781126-65781145 | Msa1207930:CDS | 25.0% |
| !! | TGGTTTTTGTTAAAGGATTT+GGG | - | chr8_1:65781220-65781239 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTGTTAAAGGATT+TGG | - | chr8_1:65781221-65781240 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | chr8_1:65781257-65781276 | Msa1207930:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | chr8_1:65781495-65781514 | Msa1207930:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | + | chr8_1:65781952-65781971 | Msa1207930:CDS | 25.0% |
| !! | TGTTTTCATAGACTCATAAT+CGG | - | chr8_1:65782002-65782021 | None:intergenic | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | + | chr8_1:65782098-65782117 | Msa1207930:CDS | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | + | chr8_1:65782131-65782150 | Msa1207930:CDS | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | + | chr8_1:65782132-65782151 | Msa1207930:CDS | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | + | chr8_1:65782291-65782310 | Msa1207930:CDS | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | + | chr8_1:65782300-65782319 | Msa1207930:CDS | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | + | chr8_1:65782349-65782368 | Msa1207930:CDS | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | + | chr8_1:65782589-65782608 | Msa1207930:CDS | 25.0% |
| ! | GATCAAAACCACATTTAATA+AGG | - | chr8_1:65782726-65782745 | None:intergenic | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | - | chr8_1:65783385-65783404 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | - | chr8_1:65783386-65783405 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | - | chr8_1:65783394-65783413 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | + | chr8_1:65783454-65783473 | Msa1207930:intron | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | - | chr8_1:65783459-65783478 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | - | chr8_1:65783496-65783515 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | - | chr8_1:65783512-65783531 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | + | chr8_1:65783541-65783560 | Msa1207930:CDS | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | - | chr8_1:65783546-65783565 | None:intergenic | 25.0% |
| !! | ATAGTTTGATCAGTTGATGA+GGG | - | chr8_1:65780748-65780767 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | chr8_1:65780941-65780960 | Msa1207930:CDS | 30.0% | |
| TCATGAAGATGAAAAACTTC+AGG | + | chr8_1:65781016-65781035 | Msa1207930:CDS | 30.0% | |
| !! | TTGCACTTGGTTTTTGTTAA+AGG | - | chr8_1:65781227-65781246 | None:intergenic | 30.0% |
| TTTAACAAAAACCAAGTGCA+AGG | + | chr8_1:65781226-65781245 | Msa1207930:CDS | 30.0% | |
| TTAGAACTTAATGATCAAGC+TGG | + | chr8_1:65781389-65781408 | Msa1207930:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | + | chr8_1:65781421-65781440 | Msa1207930:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | + | chr8_1:65781466-65781485 | Msa1207930:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr8_1:65781625-65781644 | Msa1207930:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | - | chr8_1:65781822-65781841 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | + | chr8_1:65781822-65781841 | Msa1207930:CDS | 30.0% | |
| TGATCAGTAATTATGGCATT+CGG | - | chr8_1:65781872-65781891 | None:intergenic | 30.0% | |
| TCTGTCTTGATCAGTAATTA+TGG | - | chr8_1:65781879-65781898 | None:intergenic | 30.0% | |
| TTTGAGTAAGAGTGATTTCA+TGG | + | chr8_1:65782048-65782067 | Msa1207930:CDS | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | + | chr8_1:65782105-65782124 | Msa1207930:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | + | chr8_1:65782106-65782125 | Msa1207930:CDS | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | + | chr8_1:65782107-65782126 | Msa1207930:CDS | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | + | chr8_1:65782214-65782233 | Msa1207930:CDS | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | + | chr8_1:65782411-65782430 | Msa1207930:CDS | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | - | chr8_1:65782633-65782652 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | + | chr8_1:65782631-65782650 | Msa1207930:CDS | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | - | chr8_1:65782673-65782692 | None:intergenic | 30.0% | |
| AGACATACCCTTATTAAATG+TGG | + | chr8_1:65782715-65782734 | Msa1207930:CDS | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | + | chr8_1:65782733-65782752 | Msa1207930:CDS | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | + | chr8_1:65782843-65782862 | Msa1207930:CDS | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | - | chr8_1:65782988-65783007 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | - | chr8_1:65783049-65783068 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | + | chr8_1:65783402-65783421 | Msa1207930:CDS | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | + | chr8_1:65783515-65783534 | Msa1207930:CDS | 30.0% | |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | + | chr8_1:65783630-65783649 | Msa1207930:intron | 30.0% |
| ATGGGTGATAACCCAATTTA+AGG | - | chr8_1:65780725-65780744 | None:intergenic | 35.0% | |
| ! | GATAGTTTGATCAGTTGATG+AGG | - | chr8_1:65780749-65780768 | None:intergenic | 35.0% |
| GAAGATGAAAAACTTCAGGT+TGG | + | chr8_1:65781020-65781039 | Msa1207930:CDS | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | chr8_1:65781083-65781102 | Msa1207930:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | chr8_1:65781096-65781115 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | chr8_1:65781097-65781116 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr8_1:65781363-65781382 | Msa1207930:CDS | 35.0% |
| TCAATGGTTGTTGAAGCAAA+TGG | + | chr8_1:65781437-65781456 | Msa1207930:CDS | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | + | chr8_1:65781458-65781477 | Msa1207930:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr8_1:65781624-65781643 | Msa1207930:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr8_1:65781662-65781681 | Msa1207930:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | chr8_1:65781744-65781763 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | chr8_1:65781745-65781764 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | chr8_1:65781746-65781765 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr8_1:65781746-65781765 | Msa1207930:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | chr8_1:65781807-65781826 | Msa1207930:CDS | 35.0% | |
| ATCCATGCAAAATGCAATTG+CGG | + | chr8_1:65781898-65781917 | Msa1207930:CDS | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | - | chr8_1:65781980-65781999 | None:intergenic | 35.0% |
| AGAGTGATTTCATGGAAAAG+TGG | + | chr8_1:65782056-65782075 | Msa1207930:CDS | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | + | chr8_1:65782057-65782076 | Msa1207930:CDS | 35.0% | |
| ! | ATATGTGAGAGACACGTTTT+GGG | + | chr8_1:65782162-65782181 | Msa1207930:CDS | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | + | chr8_1:65782310-65782329 | Msa1207930:CDS | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | + | chr8_1:65782453-65782472 | Msa1207930:CDS | 35.0% |
| CTCAAAGTCTTTCTCATTGA+AGG | - | chr8_1:65782557-65782576 | None:intergenic | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | - | chr8_1:65782677-65782696 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | + | chr8_1:65782674-65782693 | Msa1207930:CDS | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | + | chr8_1:65782677-65782696 | Msa1207930:CDS | 35.0% |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | + | chr8_1:65782795-65782814 | Msa1207930:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | - | chr8_1:65783050-65783069 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | + | chr8_1:65783048-65783067 | Msa1207930:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | + | chr8_1:65783185-65783204 | Msa1207930:CDS | 35.0% |
| !! | TAGGGGGAACATATTAGTTT+TGG | + | chr8_1:65783325-65783344 | Msa1207930:intron | 35.0% |
| !!! | AGGGGGAACATATTAGTTTT+GGG | + | chr8_1:65783326-65783345 | Msa1207930:intron | 35.0% |
| !!! | CATATTAGTTTTGGGAGGAA+TGG | + | chr8_1:65783334-65783353 | Msa1207930:CDS | 35.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | chr8_1:65780743-65780762 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | chr8_1:65780744-65780763 | None:intergenic | 40.0% |
| GATGAAGAGGATATCAGAGA+AGG | + | chr8_1:65780954-65780973 | Msa1207930:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | chr8_1:65781082-65781101 | Msa1207930:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | chr8_1:65781089-65781108 | Msa1207930:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | chr8_1:65781158-65781177 | Msa1207930:CDS | 40.0% | |
| TGGATCAAAGTATGTGAGCA+AGG | + | chr8_1:65781178-65781197 | Msa1207930:CDS | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+TGG | - | chr8_1:65781240-65781259 | None:intergenic | 40.0% |
| TAAAATAGCGCGCTTTGTCA+GGG | - | chr8_1:65781331-65781350 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | chr8_1:65781374-65781393 | None:intergenic | 40.0% |
| ! | AACCGCAATTGCATTTTGCA+TGG | - | chr8_1:65781903-65781922 | None:intergenic | 40.0% |
| ! | CATATGTGAGAGACACGTTT+TGG | + | chr8_1:65782161-65782180 | Msa1207930:CDS | 40.0% |
| ! | TTGCATTGGTGAATGCTTTC+TGG | - | chr8_1:65782390-65782409 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | + | chr8_1:65782457-65782476 | Msa1207930:CDS | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | + | chr8_1:65782681-65782700 | Msa1207930:CDS | 40.0% |
| CTTTACTTCGAGTCGGTATA+GGG | - | chr8_1:65782957-65782976 | None:intergenic | 40.0% | |
| !! | ACTTCCTTTTTGAAGGAGGA+CGG | - | chr8_1:65782981-65783000 | None:intergenic | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | - | chr8_1:65782985-65783004 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | + | chr8_1:65783062-65783081 | Msa1207930:CDS | 40.0% | |
| !!! | GGGAACATATTAGTTTTGGG+AGG | + | chr8_1:65783329-65783348 | Msa1207930:CDS | 40.0% |
| !! | CGTGTTATTGATGACGACAA+CGG | - | chr8_1:65783676-65783695 | None:intergenic | 40.0% |
| CTAAAATAGCGCGCTTTGTC+AGG | - | chr8_1:65781332-65781351 | None:intergenic | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | + | chr8_1:65781366-65781385 | Msa1207930:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | chr8_1:65781509-65781528 | Msa1207930:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | chr8_1:65781510-65781529 | Msa1207930:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr8_1:65781731-65781750 | Msa1207930:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | chr8_1:65781737-65781756 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | chr8_1:65781763-65781782 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | chr8_1:65781763-65781782 | Msa1207930:CDS | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | chr8_1:65781764-65781783 | Msa1207930:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr8_1:65781787-65781806 | Msa1207930:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | - | chr8_1:65781838-65781857 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | + | chr8_1:65781839-65781858 | Msa1207930:CDS | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | - | chr8_1:65781931-65781950 | None:intergenic | 45.0% |
| AACGTGTCTCTCACATATGC+AGG | - | chr8_1:65782160-65782179 | None:intergenic | 45.0% | |
| AACCTTCTTCCACAATGCCA+GGG | - | chr8_1:65782903-65782922 | None:intergenic | 45.0% | |
| TGGCATTGTGGAAGAAGGTT+CGG | + | chr8_1:65782903-65782922 | Msa1207930:CDS | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | - | chr8_1:65782958-65782977 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | + | chr8_1:65782955-65782974 | Msa1207930:CDS | 45.0% |
| CTTGTACTTTAGACGCACAC+AGG | - | chr8_1:65783160-65783179 | None:intergenic | 45.0% | |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | + | chr8_1:65783340-65783359 | Msa1207930:CDS | 45.0% |
| ACGACAACGGATCATTCACA+TGG | - | chr8_1:65783663-65783682 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | + | chr8_1:65781511-65781530 | Msa1207930:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr8_1:65781642-65781661 | Msa1207930:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr8_1:65781643-65781662 | Msa1207930:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | chr8_1:65781772-65781791 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr8_1:65781784-65781803 | Msa1207930:CDS | 50.0% |
| TCCCAAAAGCTCGTCATCGA+TGG | + | chr8_1:65781927-65781946 | Msa1207930:CDS | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | - | chr8_1:65781932-65781951 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | + | chr8_1:65781936-65781955 | Msa1207930:CDS | 50.0% | |
| !! | TGTGAGAGACACGTTTTGGG+CGG | + | chr8_1:65782165-65782184 | Msa1207930:CDS | 50.0% |
| !! | ACCTCTAAAGAAGCATCCCC+TGG | + | chr8_1:65782883-65782902 | Msa1207930:CDS | 50.0% |
| ACCTTCTTCCACAATGCCAG+GGG | - | chr8_1:65782902-65782921 | None:intergenic | 50.0% | |
| GAACCTTCTTCCACAATGCC+AGG | - | chr8_1:65782904-65782923 | None:intergenic | 50.0% | |
| AAGGCCGTCCTCCTTCAAAA+AGG | + | chr8_1:65782974-65782993 | Msa1207930:CDS | 50.0% | |
| TTTGGGAGGAATGGACATGG+TGG | + | chr8_1:65783343-65783362 | Msa1207930:CDS | 50.0% | |
| !! | GTGAGAGACACGTTTTGGGC+GGG | + | chr8_1:65782166-65782185 | Msa1207930:CDS | 55.0% |
| GCCAGGGGATGCTTCTTTAG+AGG | - | chr8_1:65782887-65782906 | None:intergenic | 55.0% | |
| !! | AGAAGCATCCCCTGGCATTG+TGG | + | chr8_1:65782891-65782910 | Msa1207930:CDS | 55.0% |
| TCCCCTGGCATTGTGGAAGA+AGG | + | chr8_1:65782898-65782917 | Msa1207930:CDS | 55.0% | |
| GGACGGCCTTTACTTCGAGT+CGG | - | chr8_1:65782964-65782983 | None:intergenic | 55.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | chr8_1:65781515-65781534 | Msa1207930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 65780688 | 65783708 | 65780688 | ID=Msa1207930;Name=Msa1207930 |
| chr8_1 | mRNA | 65780688 | 65783708 | 65780688 | ID=Msa1207930-mRNA-1;Parent=Msa1207930;Name=Msa1207930-mRNA-1;_AED=0.25;_eAED=0.04;_QI=0|0.6|0.16|1|1|1|6|0|818 |
| chr8_1 | exon | 65780688 | 65780709 | 65780688 | ID=Msa1207930-mRNA-1:exon:21559;Parent=Msa1207930-mRNA-1 |
| chr8_1 | exon | 65780931 | 65783083 | 65780931 | ID=Msa1207930-mRNA-1:exon:21560;Parent=Msa1207930-mRNA-1 |
| chr8_1 | exon | 65783155 | 65783226 | 65783155 | ID=Msa1207930-mRNA-1:exon:21561;Parent=Msa1207930-mRNA-1 |
| chr8_1 | exon | 65783328 | 65783423 | 65783328 | ID=Msa1207930-mRNA-1:exon:21562;Parent=Msa1207930-mRNA-1 |
| chr8_1 | exon | 65783506 | 65783562 | 65783506 | ID=Msa1207930-mRNA-1:exon:21563;Parent=Msa1207930-mRNA-1 |
| chr8_1 | exon | 65783652 | 65783708 | 65783652 | ID=Msa1207930-mRNA-1:exon:21564;Parent=Msa1207930-mRNA-1 |
| chr8_1 | CDS | 65780688 | 65780709 | 65780688 | ID=Msa1207930-mRNA-1:cds;Parent=Msa1207930-mRNA-1 |
| chr8_1 | CDS | 65780931 | 65783083 | 65780931 | ID=Msa1207930-mRNA-1:cds;Parent=Msa1207930-mRNA-1 |
| chr8_1 | CDS | 65783155 | 65783226 | 65783155 | ID=Msa1207930-mRNA-1:cds;Parent=Msa1207930-mRNA-1 |
| chr8_1 | CDS | 65783328 | 65783423 | 65783328 | ID=Msa1207930-mRNA-1:cds;Parent=Msa1207930-mRNA-1 |
| chr8_1 | CDS | 65783506 | 65783562 | 65783506 | ID=Msa1207930-mRNA-1:cds;Parent=Msa1207930-mRNA-1 |
| chr8_1 | CDS | 65783652 | 65783708 | 65783652 | ID=Msa1207930-mRNA-1:cds;Parent=Msa1207930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
