AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0206990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206990 MtrunA17_Chr2g0310781 96.417 307 11 0 1 307 1 307 0.0 615
Msa0206990 MtrunA17_Chr2g0305391 91.080 213 12 3 337 548 346 552 1.38e-122 371
Msa0206990 MtrunA17_Chr2g0310761 61.830 317 105 7 1 304 9 322 2.22e-115 369
Msa0206990 MtrunA17_Chr8g0357611 55.172 319 127 5 1 304 15 332 5.22e-98 326
Msa0206990 MtrunA17_Chr1g0196631 37.578 322 148 9 30 298 23 344 1.94e-45 172
Msa0206990 MtrunA17_Chr6g0461841 42.510 247 105 6 78 287 84 330 4.52e-45 171
Msa0206990 MtrunA17_Chr4g0065211 52.518 139 60 3 146 280 147 283 1.36e-35 142
Msa0206990 MtrunA17_Chr2g0305141 41.546 207 109 4 151 348 171 374 1.39e-35 142
Msa0206990 MtrunA17_Chr4g0072741 48.966 145 68 2 139 281 40 180 2.23e-27 117
Msa0206990 MtrunA17_Chr4g0048541 46.018 113 58 2 141 250 19 131 2.30e-26 111
Msa0206990 MtrunA17_Chr6g0483611 38.312 154 84 4 151 295 59 210 2.86e-23 103
Msa0206990 MtrunA17_Chr2g0279951 43.519 108 59 2 145 250 38 145 2.33e-22 100
Msa0206990 MtrunA17_Chr2g0277031 38.298 141 75 3 151 280 13 152 2.51e-22 98.2
Msa0206990 MtrunA17_Chr4g0049441 41.284 109 60 2 145 250 33 140 4.07e-21 96.3
Msa0206990 MtrunA17_Chr1g0209151 40.351 114 63 2 142 250 46 159 2.73e-20 95.1
Msa0206990 MtrunA17_Chr5g0412711 43.000 100 56 1 151 249 16 115 3.68e-20 89.4
Msa0206990 MtrunA17_Chr4g0058551 48.352 91 45 1 142 232 2 90 9.12e-20 87.0
Msa0206990 MtrunA17_Chr8g0392371 35.948 153 78 6 106 250 15 155 3.17e-18 88.2
Msa0206990 MtrunA17_Chr3g0117061 43.902 82 46 0 151 232 9 90 2.00e-16 78.2
Msa0206990 MtrunA17_Chr5g0428011 39.130 115 61 4 143 252 21 131 3.80e-16 80.5
Msa0206990 MtrunA17_Chr5g0440771 33.945 109 63 3 151 252 4 110 2.12e-11 63.5
Msa0206990 MtrunA17_Chr5g0428071 32.000 125 77 3 151 267 43 167 3.24e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206990 AT1G79570.3 50.915 328 143 7 1 312 14 339 8.74e-88 292
Msa0206990 AT1G79570.4 50.915 328 143 7 1 312 14 339 1.08e-86 291
Msa0206990 AT1G79570.5 50.915 328 143 7 1 312 14 339 1.08e-86 291
Msa0206990 AT1G79570.2 50.915 328 143 7 1 312 14 339 2.01e-86 291
Msa0206990 AT1G79570.1 50.915 328 143 7 1 312 14 339 2.01e-86 291
Msa0206990 AT1G16270.1 52.027 296 116 7 32 312 43 327 3.11e-73 253
Msa0206990 AT1G16270.2 52.027 296 116 7 32 312 43 327 3.11e-73 253
Msa0206990 AT1G16270.3 52.027 296 116 7 32 312 43 327 3.11e-73 253
Msa0206990 AT2G35050.1 46.844 301 129 10 2 281 16 306 1.95e-61 219
Msa0206990 AT2G35050.2 46.844 301 129 10 2 281 16 306 1.95e-61 219
Msa0206990 AT3G46920.2 53.333 135 58 3 151 280 75 209 3.50e-35 141
Msa0206990 AT3G46920.1 53.333 135 58 3 151 280 9 143 4.08e-35 141
Msa0206990 AT3G24715.1 33.654 312 154 9 44 310 29 332 1.38e-34 139
Msa0206990 AT3G24715.3 33.654 312 154 9 44 310 29 332 1.38e-34 139
Msa0206990 AT3G24715.2 33.654 312 154 9 44 310 29 332 1.38e-34 139
Msa0206990 AT1G04700.3 37.109 256 118 8 45 280 30 262 1.97e-33 136
Msa0206990 AT1G04700.1 37.109 256 118 8 45 280 30 262 2.51e-33 135
Msa0206990 AT1G04700.2 37.109 256 118 8 45 280 30 262 2.51e-33 135
Msa0206990 AT5G57610.1 50.758 132 62 2 151 280 24 154 3.05e-31 129
Msa0206990 AT5G49920.1 43.537 147 77 3 145 290 4 145 1.00e-28 116
Msa0206990 AT4G05150.1 42.609 115 63 2 140 251 48 162 1.37e-23 104
Msa0206990 AT3G26510.1 49.541 109 47 3 146 249 7 112 2.29e-23 98.2
Msa0206990 AT3G26510.4 49.541 109 47 3 146 249 7 112 2.29e-23 98.2
Msa0206990 AT3G26510.3 49.541 109 47 3 146 249 7 112 2.29e-23 98.2
Msa0206990 AT3G26510.2 49.541 109 47 3 146 249 7 112 2.29e-23 98.2
Msa0206990 AT3G26510.6 49.541 109 47 3 146 249 7 112 2.29e-23 98.2
Msa0206990 AT3G26510.5 49.541 109 47 3 146 249 7 112 2.29e-23 98.2
Msa0206990 AT1G70640.1 52.874 87 40 1 147 232 4 90 1.60e-21 92.4
Msa0206990 AT3G48240.1 49.495 99 46 1 151 249 14 108 3.69e-21 91.7
Msa0206990 AT5G64430.1 38.406 138 74 3 148 278 42 175 8.83e-21 96.3
Msa0206990 AT2G01190.1 44.037 109 56 2 148 251 72 180 1.36e-20 96.3
Msa0206990 AT3G18230.1 33.533 167 106 2 151 312 64 230 1.77e-19 92.8
Msa0206990 AT5G09620.2 41.509 106 56 2 151 250 40 145 5.23e-19 90.5
Msa0206990 AT5G09620.1 41.509 106 56 2 151 250 40 145 6.42e-19 90.5
Msa0206990 AT5G63130.1 51.948 77 37 0 146 222 10 86 6.68e-19 85.5
Msa0206990 AT5G63130.2 51.948 77 37 0 146 222 10 86 6.68e-19 85.5
Msa0206990 AT1G25300.1 35.577 104 61 2 151 252 11 110 2.17e-17 82.8
Msa0206990 AT5G16220.1 32.857 140 85 5 151 283 31 168 1.42e-15 79.7

Find 175 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACATATGTTTGGAAATT+TGG 0.079931 2_1:+37183983 Msa0206990:three_prime_UTR
AAGCTATAAATTGTAGATTT+TGG 0.135470 2_1:+37184034 Msa0206990:three_prime_UTR
CTTCCAATGCCATGTTATAT+TGG 0.190107 2_1:-37183535 None:intergenic
CCAGGCTGGTATTCATTTCT+AGG 0.200025 2_1:-37181559 None:intergenic
CAGTATGTTATTGCTGTTAA+TGG 0.224995 2_1:+37182366 Msa0206990:CDS
TTGCAGGGCAGTTTCTTTAT+AGG 0.228509 2_1:+37181332 Msa0206990:intron
ACAAATTGGGGTGGAATGTT+AGG 0.252881 2_1:-37183584 None:intergenic
TAATTATACAACTGGTTATA+TGG 0.254070 2_1:+37181768 Msa0206990:CDS
TTGCTTCTGTCAAACTCTTT+AGG 0.255530 2_1:-37181874 None:intergenic
ATATAACCAGTTGTATAATT+AGG 0.258175 2_1:-37181766 None:intergenic
TCCTGATGCAGCGAAGTTCT+TGG 0.283088 2_1:-37181919 None:intergenic
TGGAATTCACTTGGCCTATC+TGG 0.284298 2_1:-37183478 None:intergenic
AAGATATGTCCTTTCTTATA+CGG 0.296886 2_1:-37182092 None:intergenic
TGCAAATGATATAAATGAAT+TGG 0.298515 2_1:+37182440 Msa0206990:CDS
AGGGTTGCATGCTTACAAAT+TGG 0.306375 2_1:-37183598 None:intergenic
GTTCTCAATCTGTGATTTGC+AGG 0.311877 2_1:+37182299 Msa0206990:CDS
CAGAAGAATACATTAATGTT+TGG 0.319728 2_1:-37181462 None:intergenic
TGCTTCATTCTCATCATTGT+TGG 0.323901 2_1:-37183270 None:intergenic
TTCCAATGCCATGTTATATT+GGG 0.338895 2_1:-37183534 None:intergenic
ATGAGAGACAGGGCAAATAT+TGG 0.353843 2_1:+37181715 Msa0206990:CDS
TCTGTTCAACTTTGAGCAAA+TGG 0.354320 2_1:+37180301 Msa0206990:five_prime_UTR
AACAAGGGAAAATGGGAAAA+TGG 0.354885 2_1:-37180226 None:intergenic
AGACAGTTTGTGCATGGATA+TGG 0.356567 2_1:+37181946 Msa0206990:CDS
GGGTTGCATGCTTACAAATT+GGG 0.356852 2_1:-37183597 None:intergenic
CAAATTGGGGTGGAATGTTA+GGG 0.365016 2_1:-37183583 None:intergenic
AGAAGAATACATTAATGTTT+GGG 0.369109 2_1:-37181461 None:intergenic
ATTGAATATCATATCACTTT+CGG 0.369794 2_1:+37180082 Msa0206990:five_prime_UTR
ACAAAGCCATGAGCAAAATA+TGG 0.380272 2_1:+37183334 Msa0206990:CDS
TTATACGGAGAATGCGTGTT+TGG 0.381207 2_1:-37182077 None:intergenic
ACAATTAAGTACCAGCTTCC+CGG 0.382280 2_1:+37182162 Msa0206990:CDS
GACACAAGCAGCTGATCTTA+TGG 0.383074 2_1:+37182694 Msa0206990:CDS
GGCTTGTATGACTTACTAAC+AGG 0.383155 2_1:+37182820 Msa0206990:CDS
AAAGTTGAACAGATGCAGTT+TGG 0.383282 2_1:-37180291 None:intergenic
TGAGAGACAGGGCAAATATT+GGG 0.389082 2_1:+37181716 Msa0206990:CDS
TGGAAGGATGTACAACGAAT+TGG 0.394607 2_1:+37184054 Msa0206990:three_prime_UTR
GGGGAACACAAAAGACATTT+GGG 0.396099 2_1:-37183562 None:intergenic
ATGAAGTTTCTTTGTAGCTT+CGG 0.397325 2_1:+37182003 Msa0206990:CDS
TTGCTCATGGCTTTGTTGCT+CGG 0.400211 2_1:-37183327 None:intergenic
TGCATTATTGACTGTGATCC+AGG 0.400408 2_1:-37181577 None:intergenic
GAAACAATTGCCAATGCTAC+TGG 0.404039 2_1:-37182865 None:intergenic
ACACACGCTAAACATATGTT+TGG 0.407058 2_1:+37183975 Msa0206990:three_prime_UTR
ATTAGTCTGAGCTGGATGTT+GGG 0.407275 2_1:-37183744 None:intergenic
CTCTTGAGTTTATGAGAGAC+AGG 0.408175 2_1:+37181704 Msa0206990:CDS
TCCAAGAACTTCGCTGCATC+AGG 0.410677 2_1:+37181918 Msa0206990:CDS
GGTGTATAAATCAGTACAAT+CGG 0.413109 2_1:+37182478 Msa0206990:CDS
TGATGAGTTATCATAACTTT+CGG 0.413222 2_1:-37181974 None:intergenic
GCAACCTCCCAACCTGTTAC+CGG 0.415131 2_1:-37183296 None:intergenic
AATATATTCGGTTCATCAAA+TGG 0.422925 2_1:-37183689 None:intergenic
AGTAATGGAGGATCTGAAAC+TGG 0.423190 2_1:+37181814 Msa0206990:CDS
TGCTGTTAATGGCATGGACT+TGG 0.425364 2_1:+37182377 Msa0206990:CDS
TGAATAGTCTGAAAATCAAA+AGG 0.429214 2_1:-37183503 None:intergenic
AATGAAGCAAGTCCGGTAAC+AGG 0.430805 2_1:+37183284 Msa0206990:CDS
AGCGTTGATGATCTATAATC+AGG 0.441209 2_1:+37182134 Msa0206990:CDS
CAATTAAGTACCAGCTTCCC+GGG 0.442674 2_1:+37182163 Msa0206990:CDS
GACGGCGGCGGCAATATATT+CGG 0.443789 2_1:-37183701 None:intergenic
AGTGATCCTAATTATACAAC+TGG 0.444251 2_1:+37181760 Msa0206990:CDS
CGGGGAAGATCTTGATGCCT+TGG 0.444463 2_1:+37182182 Msa0206990:CDS
GATTTGCAGGATGCTCAGTT+TGG 0.444789 2_1:+37182312 Msa0206990:CDS
GTTGACATGTTAAAACTTGA+GGG 0.446572 2_1:+37183410 Msa0206990:CDS
GTACAATCGGGGAGTAGAAA+TGG 0.450505 2_1:+37182491 Msa0206990:CDS
TTATATATTGAAGCTAATGC+TGG 0.454320 2_1:+37183434 Msa0206990:CDS
CTGTTCAACTTTGAGCAAAT+GGG 0.454532 2_1:+37180302 Msa0206990:five_prime_UTR
CATGTCTATGCCGTCAATGA+TGG 0.456219 2_1:+37181843 Msa0206990:CDS
TCAGTTTGGTCTCACGTCCA+TGG 0.456435 2_1:+37182326 Msa0206990:CDS
GCATTGGCAATTGTTTCAAC+CGG 0.464839 2_1:+37182871 Msa0206990:CDS
GAGCATTATTATTAGAAACT+TGG 0.467937 2_1:-37183622 None:intergenic
TACCTTAGCTTTCCATCACT+TGG 0.469395 2_1:-37182045 None:intergenic
ATTCGGTTCATCAAATGGAT+TGG 0.475005 2_1:-37183684 None:intergenic
AGCAAGTCCGGTAACAGGTT+GGG 0.477140 2_1:+37183289 Msa0206990:CDS
GTAAGAAATTATAGCAGTGA+AGG 0.477441 2_1:+37183926 Msa0206990:three_prime_UTR
CAAGATCTTCCCCGGGAAGC+TGG 0.477699 2_1:-37182173 None:intergenic
CAAAAGGGTTGGAATTCACT+TGG 0.477984 2_1:-37183487 None:intergenic
GATGGAAAGCTAAGGTATGT+TGG 0.479309 2_1:+37182051 Msa0206990:CDS
TGTATCAAATAATGCTGTAC+AGG 0.481504 2_1:-37181664 None:intergenic
AATTAGTCTGAGCTGGATGT+TGG 0.482654 2_1:-37183745 None:intergenic
GAGAAGGATCACAAAAGCTT+AGG 0.485352 2_1:+37182268 Msa0206990:CDS
TCAGAATAATTAGTCTGAGC+TGG 0.488139 2_1:-37183752 None:intergenic
TGATGAAAATCCAGTAGCAT+TGG 0.490145 2_1:+37182855 Msa0206990:CDS
ATAGAAATTTGAAGCAGCAT+TGG 0.492013 2_1:-37181392 None:intergenic
GTTTAACTTCCGATGTATTG+AGG 0.496791 2_1:-37181642 None:intergenic
AATCACAATGGATTTGCCTA+TGG 0.500138 2_1:-37183895 None:intergenic
TAGAAATGGCTGTGGAATTG+AGG 0.505903 2_1:+37182505 Msa0206990:CDS
ATTATTATTAGAAACTTGGT+AGG 0.508159 2_1:-37183618 None:intergenic
TATATATTGAAGCTAATGCT+GGG 0.509125 2_1:+37183435 Msa0206990:CDS
CAACAACAACAACGTGTGCT+AGG 0.509358 2_1:+37180202 Msa0206990:five_prime_UTR
GTGTATAAATCAGTACAATC+GGG 0.510389 2_1:+37182479 Msa0206990:CDS
AGTTGACATGTTAAAACTTG+AGG 0.511951 2_1:+37183409 Msa0206990:CDS
CATTAACAGCAATAACATAC+TGG 0.512418 2_1:-37182365 None:intergenic
TGATGAGAATGAAGCAAGTC+CGG 0.515942 2_1:+37183277 Msa0206990:CDS
CAGTTTGGTCTCACGTCCAT+GGG 0.516382 2_1:+37182327 Msa0206990:CDS
GAGTCTCAAGTCATTGAAGC+TGG 0.518318 2_1:+37182527 Msa0206990:CDS
CATGATGGAGGATACCAGAT+AGG 0.522199 2_1:+37183464 Msa0206990:CDS
CAAGGCATCAAGATCTTCCC+CGG 0.523488 2_1:-37182181 None:intergenic
CGAGGATATACAGAACATGA+TGG 0.525779 2_1:+37182221 Msa0206990:CDS
GGATATTTATCCATCATTGA+CGG 0.534174 2_1:-37181853 None:intergenic
CCTAGAAATGAATACCAGCC+TGG 0.535022 2_1:+37181559 Msa0206990:CDS
AAATGATATAAATGAATTGG+AGG 0.535088 2_1:+37182443 Msa0206990:CDS
TACCCAATATAACATGGCAT+TGG 0.535634 2_1:+37183532 Msa0206990:CDS
GGTAGGTCTTCAAAATAAGC+AGG 0.539237 2_1:+37183379 Msa0206990:CDS
TAATAATAATGCTCAACAGC+AGG 0.540187 2_1:+37183631 Msa0206990:CDS
AGTCTGAAAATCAAAAGGGT+TGG 0.544819 2_1:-37183498 None:intergenic
AATGATATAAATGAATTGGA+GGG 0.553986 2_1:+37182444 Msa0206990:CDS
TGTGTTTGGAATGTACAAAC+AGG 0.554029 2_1:-37183812 None:intergenic
CAGCATTATTTGATACAGAC+GGG 0.556155 2_1:+37181670 Msa0206990:CDS
TAAGAAATTATAGCAGTGAA+GGG 0.557666 2_1:+37183927 Msa0206990:three_prime_UTR
ATATTGCCACGGCCAAGTGA+TGG 0.557947 2_1:+37182033 Msa0206990:CDS
GAGGTTGAAGACGACGGCGG+CGG 0.560844 2_1:-37183713 None:intergenic
ACAGCATTATTTGATACAGA+CGG 0.561948 2_1:+37181669 Msa0206990:CDS
GACAATAGACAGTTTGTGCA+TGG 0.562402 2_1:+37181940 Msa0206990:CDS
GGTTGCATGCTTACAAATTG+GGG 0.562791 2_1:-37183596 None:intergenic
ATGGTCATTCTTGCATCCAT+AGG 0.563346 2_1:+37183879 Msa0206990:three_prime_UTR
ACGCATTCTCCGTATAAGAA+AGG 0.563451 2_1:+37182083 Msa0206990:CDS
TCTAAACTTTAGTAACTGAC+CGG 0.564128 2_1:-37181427 None:intergenic
AAGCAAGTCCGGTAACAGGT+TGG 0.567077 2_1:+37183288 Msa0206990:CDS
TTATTTGATACAGACGGGTG+AGG 0.567880 2_1:+37181675 Msa0206990:CDS
GAATAGTCTGAAAATCAAAA+GGG 0.569267 2_1:-37183502 None:intergenic
TGTGTGGTAACATTATAGAA+TGG 0.571828 2_1:+37183860 Msa0206990:three_prime_UTR
GTCAATAATGCATGACCACA+TGG 0.572642 2_1:+37181588 Msa0206990:CDS
TCACTGACATTCGAAAATAC+AGG 0.575002 2_1:-37181742 None:intergenic
AGCTTTCCATCACTTGGCCG+TGG 0.576472 2_1:-37182039 None:intergenic
GACTTCAGAATCATCGCCCA+TGG 0.577887 2_1:-37182343 None:intergenic
AATGCTGGGGTGCAACATGA+TGG 0.578432 2_1:+37183449 Msa0206990:CDS
AAATAGCAGTAATATTACAT+TGG 0.581592 2_1:-37184006 None:intergenic
TGTTATTGCTGTTAATGGCA+TGG 0.586180 2_1:+37182371 Msa0206990:CDS
TTTCTATATAGTGACTTCAC+CGG 0.589613 2_1:+37181408 Msa0206990:five_prime_UTR
TGATATAAATGAATTGGAGG+GGG 0.590845 2_1:+37182446 Msa0206990:CDS
AAATTGGGGTGGAATGTTAG+GGG 0.594736 2_1:-37183582 None:intergenic
TGCATGCTTACAAATTGGGG+TGG 0.595548 2_1:-37183593 None:intergenic
TGCAGTAGCAGAGAATAAAG+AGG 0.600894 2_1:+37183358 Msa0206990:CDS
AGATCAGCTGCTTGTGTCGG+TGG 0.601927 2_1:-37182689 None:intergenic
TCGGGGAGTAGAAATGGCTG+TGG 0.605719 2_1:+37182497 Msa0206990:CDS
TTATTATTAGAAACTTGGTA+GGG 0.605822 2_1:-37183617 None:intergenic
ATAATGCATGACCACATGGA+TGG 0.606199 2_1:+37181592 Msa0206990:CDS
ATGATATAAATGAATTGGAG+GGG 0.607759 2_1:+37182445 Msa0206990:CDS
TTAGTCTGAGCTGGATGTTG+GGG 0.613994 2_1:-37183743 None:intergenic
GAGGATATACAGAACATGAT+GGG 0.614125 2_1:+37182222 Msa0206990:CDS
TTATTGACTGTGATCCAGGC+TGG 0.620943 2_1:-37181573 None:intergenic
GTAGCAGAGAATAAAGAGGT+AGG 0.624479 2_1:+37183362 Msa0206990:CDS
TAATAATGCTCAACAGCAGG+AGG 0.625575 2_1:+37183634 Msa0206990:CDS
AATGCCATGTTATATTGGGT+AGG 0.627357 2_1:-37183530 None:intergenic
ATGCAGTTTGGATTCAACAA+TGG 0.627793 2_1:-37180279 None:intergenic
TCCGATGTATTGAGGTCATG+TGG 0.628153 2_1:-37181634 None:intergenic
GTGGGTGCAACATCAACGTG+TGG 0.630562 2_1:+37180124 Msa0206990:five_prime_UTR
GATTAGATATAAGAGACAGA+TGG 0.631203 2_1:+37183773 Msa0206990:exon
GGAAAGCTAAGGTATGTTGG+AGG 0.631215 2_1:+37182054 Msa0206990:CDS
ACTGGTTATATGGAACTGAA+AGG 0.631603 2_1:+37181778 Msa0206990:CDS
TATAGCAGTGAAGGGATGCA+CGG 0.634034 2_1:+37183935 Msa0206990:three_prime_UTR
AAGTCCGGTAACAGGTTGGG+AGG 0.634847 2_1:+37183292 Msa0206990:CDS
GGCCAAGTGATGGAAAGCTA+AGG 0.638781 2_1:+37182043 Msa0206990:CDS
ATAAGATCAGCTGCTTGTGT+CGG 0.639694 2_1:-37182692 None:intergenic
ATATATTGAAGCTAATGCTG+GGG 0.640228 2_1:+37183436 Msa0206990:CDS
GCAACATGAAGAACTATGTG+TGG 0.642011 2_1:+37183844 Msa0206990:three_prime_UTR
AAGTTTCTTTGTAGCTTCGG+CGG 0.643153 2_1:+37182006 Msa0206990:CDS
ACTGTCTGCACCACCATGCA+TGG 0.647260 2_1:+37184081 Msa0206990:three_prime_UTR
AAGGCATCAAGATCTTCCCC+GGG 0.650794 2_1:-37182180 None:intergenic
GTCAGATGATACAGATACCA+AGG 0.657270 2_1:-37182199 None:intergenic
ACCACATGACCTCAATACAT+CGG 0.661871 2_1:+37181633 Msa0206990:CDS
TGATCCTACCCAATATAACA+TGG 0.662334 2_1:+37183526 Msa0206990:CDS
AATCATCTAGAAGATAGAGA+AGG 0.670856 2_1:+37182252 Msa0206990:CDS
TCTTGAGTTTATGAGAGACA+GGG 0.674716 2_1:+37181705 Msa0206990:CDS
GATGTGATTTGTACCATGCA+TGG 0.683713 2_1:-37184094 None:intergenic
TCATATAAATTCCATCCATG+TGG 0.684508 2_1:-37181603 None:intergenic
TGGGTGCAACATCAACGTGT+GGG 0.687740 2_1:+37180125 Msa0206990:five_prime_UTR
TGTATAAATCAGTACAATCG+GGG 0.687901 2_1:+37182480 Msa0206990:CDS
GAGTTTGACAGAAGCAACTG+CGG 0.690109 2_1:+37181880 Msa0206990:CDS
GCTGGGGTGCAACATGATGG+AGG 0.691117 2_1:+37183452 Msa0206990:CDS
ACAACTGAGGTTGAAGACGA+CGG 0.697404 2_1:-37183719 None:intergenic
GTGATTTGTACCATGCATGG+TGG 0.701898 2_1:-37184091 None:intergenic
TGGATGTTGGGGCACAACTG+AGG 0.715876 2_1:-37183732 None:intergenic
TCGGCGGTAGAATATTGCCA+CGG 0.717552 2_1:+37182022 Msa0206990:CDS
AATTGGGGTGGAATGTTAGG+GGG 0.718102 2_1:-37183581 None:intergenic
GGTATCTGTATCATCTGACG+AGG 0.721389 2_1:+37182203 Msa0206990:CDS
GGGAACACAAAAGACATTTG+GGG 0.724077 2_1:-37183561 None:intergenic
AATTAAGTACCAGCTTCCCG+GGG 0.728477 2_1:+37182164 Msa0206990:CDS
ACTGAGGTTGAAGACGACGG+CGG 0.729428 2_1:-37183716 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCTTTTTTTCTTCAT+TGG + chr2_1:37180343-37180362 Msa0206990:intron 15.0%
!!! TTATTCTTTTTTTCTTCATT+GGG + chr2_1:37180344-37180363 Msa0206990:intron 15.0%
!! ATACACATGATATTTATAAA+TGG - chr2_1:37181241-37181260 None:intergenic 15.0%
!! ATAAGATATATCACATAAAT+AGG - chr2_1:37181269-37181288 None:intergenic 15.0%
!! ATTGAATATCATATCACTTT+CGG + chr2_1:37180082-37180101 Msa0206990:five_prime_UTR 20.0%
!! TTGTATTAAGAGAAAAACAA+GGG - chr2_1:37180244-37180263 None:intergenic 20.0%
!! TAAAATAGTTAGTGTATGTT+TGG + chr2_1:37180713-37180732 Msa0206990:intron 20.0%
!!! ATAATTGATTTTGTCATGTT+TGG + chr2_1:37180772-37180791 Msa0206990:intron 20.0%
!!! TAAGTTGAACAATAAATTTG+AGG - chr2_1:37180876-37180895 None:intergenic 20.0%
!!! ACATTAAAATATGGTGTTTT+AGG + chr2_1:37181172-37181191 Msa0206990:intron 20.0%
!!! TTTTATACTTGATTTTCATG+TGG + chr2_1:37181196-37181215 Msa0206990:intron 20.0%
!! AGAAGAATACATTAATGTTT+GGG - chr2_1:37181464-37181483 None:intergenic 20.0%
!! ATATAACCAGTTGTATAATT+AGG - chr2_1:37181769-37181788 None:intergenic 20.0%
!! TAATTATACAACTGGTTATA+TGG + chr2_1:37181768-37181787 Msa0206990:CDS 20.0%
!! TGCAAATGATATAAATGAAT+TGG + chr2_1:37182440-37182459 Msa0206990:CDS 20.0%
!! AAATGATATAAATGAATTGG+AGG + chr2_1:37182443-37182462 Msa0206990:CDS 20.0%
!! AATGATATAAATGAATTGGA+GGG + chr2_1:37182444-37182463 Msa0206990:CDS 20.0%
!! TATTCTATTATATCATTCCA+TGG + chr2_1:37182756-37182775 Msa0206990:intron 20.0%
!! ATTCTATTATATCATTCCAT+GGG + chr2_1:37182757-37182776 Msa0206990:intron 20.0%
!!! ATGATTTTCTTTGTTATGTT+AGG + chr2_1:37182798-37182817 Msa0206990:intron 20.0%
!!! TGATTTTCTTTGTTATGTTA+GGG + chr2_1:37182799-37182818 Msa0206990:intron 20.0%
!!! AATTTTATGCAATTTCAAAG+TGG + chr2_1:37183135-37183154 Msa0206990:intron 20.0%
!! TTATTATTAGAAACTTGGTA+GGG - chr2_1:37183620-37183639 None:intergenic 20.0%
!! ATTATTATTAGAAACTTGGT+AGG - chr2_1:37183621-37183640 None:intergenic 20.0%
!!! GATTTTTTAATCATTGTGAA+TGG - chr2_1:37183662-37183681 None:intergenic 20.0%
!! TAAACATATGTTTGGAAATT+TGG + chr2_1:37183983-37184002 Msa0206990:three_prime_UTR 20.0%
!! AAATAGCAGTAATATTACAT+TGG - chr2_1:37184009-37184028 None:intergenic 20.0%
!!! AAGCTATAAATTGTAGATTT+TGG + chr2_1:37184034-37184053 Msa0206990:three_prime_UTR 20.0%
!!! TATAAATTGTAGATTTTGGA+AGG + chr2_1:37184038-37184057 Msa0206990:three_prime_UTR 20.0%
! CTTGTATTAAGAGAAAAACA+AGG - chr2_1:37180245-37180264 None:intergenic 25.0%
! CTTATCAAACTTAACAAACA+TGG - chr2_1:37180578-37180597 None:intergenic 25.0%
!! AATTAGTTTAAAAGTGTGGT+TGG - chr2_1:37181008-37181027 None:intergenic 25.0%
!! ACTCAATTAGTTTAAAAGTG+TGG - chr2_1:37181012-37181031 None:intergenic 25.0%
! CAGAAGAATACATTAATGTT+TGG - chr2_1:37181465-37181484 None:intergenic 25.0%
! TGATGAGTTATCATAACTTT+CGG - chr2_1:37181977-37181996 None:intergenic 25.0%
! AAGATATGTCCTTTCTTATA+CGG - chr2_1:37182095-37182114 None:intergenic 25.0%
! AGAAAAAACTCAAATATGGT+TGG + chr2_1:37182405-37182424 Msa0206990:CDS 25.0%
! ATGATATAAATGAATTGGAG+GGG + chr2_1:37182445-37182464 Msa0206990:CDS 25.0%
! TTTGTCAAACAAACACTTAT+CGG - chr2_1:37183022-37183041 None:intergenic 25.0%
! TTATATATTGAAGCTAATGC+TGG + chr2_1:37183434-37183453 Msa0206990:CDS 25.0%
! TATATATTGAAGCTAATGCT+GGG + chr2_1:37183435-37183454 Msa0206990:CDS 25.0%
! GAATAGTCTGAAAATCAAAA+GGG - chr2_1:37183505-37183524 None:intergenic 25.0%
! TGAATAGTCTGAAAATCAAA+AGG - chr2_1:37183506-37183525 None:intergenic 25.0%
! GAGCATTATTATTAGAAACT+TGG - chr2_1:37183625-37183644 None:intergenic 25.0%
! AATATATTCGGTTCATCAAA+TGG - chr2_1:37183692-37183711 None:intergenic 25.0%
! TTACTTCCTAAAAATCACAA+TGG - chr2_1:37183910-37183929 None:intergenic 25.0%
! TAAGAAATTATAGCAGTGAA+GGG + chr2_1:37183927-37183946 Msa0206990:three_prime_UTR 25.0%
AGAGAAAAACAAGGGAAAAT+GGG - chr2_1:37180236-37180255 None:intergenic 30.0%
AAGAGAAAAACAAGGGAAAA+TGG - chr2_1:37180237-37180256 None:intergenic 30.0%
GAGACAATGAAAGTAAATCT+AGG - chr2_1:37180372-37180391 None:intergenic 30.0%
ATGTGAAGTTCAAGTACATT+AGG + chr2_1:37180462-37180481 Msa0206990:intron 30.0%
AACCCTAGATTGATAAATCT+TGG + chr2_1:37180488-37180507 Msa0206990:intron 30.0%
ACCCTAGATTGATAAATCTT+GGG + chr2_1:37180489-37180508 Msa0206990:intron 30.0%
ACCCAAGATTTATCAATCTA+GGG - chr2_1:37180493-37180512 None:intergenic 30.0%
AACCCAAGATTTATCAATCT+AGG - chr2_1:37180494-37180513 None:intergenic 30.0%
TCCAATGATGTTTCATGTTT+AGG + chr2_1:37180607-37180626 Msa0206990:intron 30.0%
TCCTAAACATGAAACATCAT+TGG - chr2_1:37180611-37180630 None:intergenic 30.0%
! TGATGTTTCATGTTTAGGAT+TGG + chr2_1:37180612-37180631 Msa0206990:intron 30.0%
TTTCCTGATTTACTCTTGAA+TGG + chr2_1:37180667-37180686 Msa0206990:intron 30.0%
AATCCATTCAAGAGTAAATC+AGG - chr2_1:37180673-37180692 None:intergenic 30.0%
! TGTATGTTTGGTTACACTTT+TGG + chr2_1:37180725-37180744 Msa0206990:intron 30.0%
AGGCTAAAAATCAATTGTAG+AGG - chr2_1:37180856-37180875 None:intergenic 30.0%
!! TGCTTCTCTAAAATTGATTC+TGG - chr2_1:37180952-37180971 None:intergenic 30.0%
ACAAGTTTCCAAAATTGTAG+TGG + chr2_1:37181045-37181064 Msa0206990:intron 30.0%
CCTATTAGCAAGAAATTAAC+AGG - chr2_1:37181294-37181313 None:intergenic 30.0%
CCTGTTAATTTCTTGCTAAT+AGG + chr2_1:37181291-37181310 Msa0206990:intron 30.0%
ATGATTCTGTTCTATTTGCA+GGG + chr2_1:37181317-37181336 Msa0206990:intron 30.0%
! ATAGAAATTTGAAGCAGCAT+TGG - chr2_1:37181395-37181414 None:intergenic 30.0%
TTTCTATATAGTGACTTCAC+CGG + chr2_1:37181408-37181427 Msa0206990:five_prime_UTR 30.0%
TCTAAACTTTAGTAACTGAC+CGG - chr2_1:37181430-37181449 None:intergenic 30.0%
! AACGTTTTTATACGTAAGCA+TGG + chr2_1:37181534-37181553 Msa0206990:exon 30.0%
TCATATAAATTCCATCCATG+TGG - chr2_1:37181606-37181625 None:intergenic 30.0%
TGTATCAAATAATGCTGTAC+AGG - chr2_1:37181667-37181686 None:intergenic 30.0%
ACAGCATTATTTGATACAGA+CGG + chr2_1:37181669-37181688 Msa0206990:CDS 30.0%
AGTGATCCTAATTATACAAC+TGG + chr2_1:37181760-37181779 Msa0206990:CDS 30.0%
!! ATTTTAGGAATCAGTAATGG+AGG + chr2_1:37181802-37181821 Msa0206990:CDS 30.0%
GGATATTTATCCATCATTGA+CGG - chr2_1:37181856-37181875 None:intergenic 30.0%
ATGAAGTTTCTTTGTAGCTT+CGG + chr2_1:37182003-37182022 Msa0206990:CDS 30.0%
AATCATCTAGAAGATAGAGA+AGG + chr2_1:37182252-37182271 Msa0206990:CDS 30.0%
CATTAACAGCAATAACATAC+TGG - chr2_1:37182368-37182387 None:intergenic 30.0%
! CAGTATGTTATTGCTGTTAA+TGG + chr2_1:37182366-37182385 Msa0206990:CDS 30.0%
GTCGAGAAAAAACTCAAATA+TGG + chr2_1:37182401-37182420 Msa0206990:CDS 30.0%
TGATATAAATGAATTGGAGG+GGG + chr2_1:37182446-37182465 Msa0206990:CDS 30.0%
GGTGTATAAATCAGTACAAT+CGG + chr2_1:37182478-37182497 Msa0206990:CDS 30.0%
GTGTATAAATCAGTACAATC+GGG + chr2_1:37182479-37182498 Msa0206990:CDS 30.0%
TGTATAAATCAGTACAATCG+GGG + chr2_1:37182480-37182499 Msa0206990:CDS 30.0%
CTAGAAGAAATTGAAGAGAA+TGG - chr2_1:37182911-37182930 None:intergenic 30.0%
GCAATATATTCAATAGTCGA+TGG + chr2_1:37182930-37182949 Msa0206990:intron 30.0%
GCAAATGTAGACATAGTTTA+TGG - chr2_1:37183182-37183201 None:intergenic 30.0%
AGTTGACATGTTAAAACTTG+AGG + chr2_1:37183409-37183428 Msa0206990:CDS 30.0%
GTTGACATGTTAAAACTTGA+GGG + chr2_1:37183410-37183429 Msa0206990:CDS 30.0%
ATATATTGAAGCTAATGCTG+GGG + chr2_1:37183436-37183455 Msa0206990:CDS 30.0%
TTCCAATGCCATGTTATATT+GGG - chr2_1:37183537-37183556 None:intergenic 30.0%
TAATAATAATGCTCAACAGC+AGG + chr2_1:37183631-37183650 Msa0206990:CDS 30.0%
GATTAGATATAAGAGACAGA+TGG + chr2_1:37183773-37183792 Msa0206990:exon 30.0%
TGTGTGGTAACATTATAGAA+TGG + chr2_1:37183860-37183879 Msa0206990:three_prime_UTR 30.0%
! GCAAATCCATTGTGATTTTT+AGG + chr2_1:37183901-37183920 Msa0206990:three_prime_UTR 30.0%
GTAAGAAATTATAGCAGTGA+AGG + chr2_1:37183926-37183945 Msa0206990:three_prime_UTR 30.0%
AACAAGGGAAAATGGGAAAA+TGG - chr2_1:37180229-37180248 None:intergenic 35.0%
ATGCAGTTTGGATTCAACAA+TGG - chr2_1:37180282-37180301 None:intergenic 35.0%
AAAGTTGAACAGATGCAGTT+TGG - chr2_1:37180294-37180313 None:intergenic 35.0%
TCTGTTCAACTTTGAGCAAA+TGG + chr2_1:37180301-37180320 Msa0206990:five_prime_UTR 35.0%
CTGTTCAACTTTGAGCAAAT+GGG + chr2_1:37180302-37180321 Msa0206990:five_prime_UTR 35.0%
TTGGGTTTAGAAAGCTAGAT+TGG + chr2_1:37180507-37180526 Msa0206990:intron 35.0%
TGGGTTTAGAAAGCTAGATT+GGG + chr2_1:37180508-37180527 Msa0206990:intron 35.0%
!! TGGATTCTGCTTGTTATGTT+TGG + chr2_1:37180687-37180706 Msa0206990:intron 35.0%
! ATGTTTGGTTACACTTTTGG+TGG + chr2_1:37180728-37180747 Msa0206990:intron 35.0%
AAGCTTGAGTATGAATGTCT+CGG - chr2_1:37181100-37181119 None:intergenic 35.0%
CTGCAAATAGAACAGAATCA+TGG - chr2_1:37181318-37181337 None:intergenic 35.0%
CATGATTCTGTTCTATTTGC+AGG + chr2_1:37181316-37181335 Msa0206990:intron 35.0%
! GTTTAACTTCCGATGTATTG+AGG - chr2_1:37181645-37181664 None:intergenic 35.0%
CAGCATTATTTGATACAGAC+GGG + chr2_1:37181670-37181689 Msa0206990:CDS 35.0%
TCTTGAGTTTATGAGAGACA+GGG + chr2_1:37181705-37181724 Msa0206990:CDS 35.0%
TCACTGACATTCGAAAATAC+AGG - chr2_1:37181745-37181764 None:intergenic 35.0%
ACTGGTTATATGGAACTGAA+AGG + chr2_1:37181778-37181797 Msa0206990:CDS 35.0%
!!! ATGGAACTGAAAGGCATTTT+AGG + chr2_1:37181787-37181806 Msa0206990:CDS 35.0%
!! GGCATTTTAGGAATCAGTAA+TGG + chr2_1:37181799-37181818 Msa0206990:CDS 35.0%
TTGCTTCTGTCAAACTCTTT+AGG - chr2_1:37181877-37181896 None:intergenic 35.0%
!! AGCGTTGATGATCTATAATC+AGG + chr2_1:37182134-37182153 Msa0206990:CDS 35.0%
GAGGATATACAGAACATGAT+GGG + chr2_1:37182222-37182241 Msa0206990:CDS 35.0%
! TGTTATTGCTGTTAATGGCA+TGG + chr2_1:37182371-37182390 Msa0206990:CDS 35.0%
TGATGAAAATCCAGTAGCAT+TGG + chr2_1:37182855-37182874 Msa0206990:CDS 35.0%
GAAGAGAATGGAAAGTTGTA+CGG - chr2_1:37182899-37182918 None:intergenic 35.0%
TCAACTTTCATTAGATGCTC+AGG - chr2_1:37182972-37182991 None:intergenic 35.0%
! CATAGTCTTAATTGTGTGGA+AGG - chr2_1:37182997-37183016 None:intergenic 35.0%
! GGATCATAGTCTTAATTGTG+TGG - chr2_1:37183001-37183020 None:intergenic 35.0%
!! ATGTCGATTCGACAAAAACA+AGG - chr2_1:37183093-37183112 None:intergenic 35.0%
TGCTTCATTCTCATCATTGT+TGG - chr2_1:37183273-37183292 None:intergenic 35.0%
ACAAAGCCATGAGCAAAATA+TGG + chr2_1:37183334-37183353 Msa0206990:CDS 35.0%
AGTCTGAAAATCAAAAGGGT+TGG - chr2_1:37183501-37183520 None:intergenic 35.0%
TGATCCTACCCAATATAACA+TGG + chr2_1:37183526-37183545 Msa0206990:CDS 35.0%
AATGCCATGTTATATTGGGT+AGG - chr2_1:37183533-37183552 None:intergenic 35.0%
TACCCAATATAACATGGCAT+TGG + chr2_1:37183532-37183551 Msa0206990:CDS 35.0%
CTTCCAATGCCATGTTATAT+TGG - chr2_1:37183538-37183557 None:intergenic 35.0%
ATTCGGTTCATCAAATGGAT+TGG - chr2_1:37183687-37183706 None:intergenic 35.0%
! TCAGAATAATTAGTCTGAGC+TGG - chr2_1:37183755-37183774 None:intergenic 35.0%
! TGTGTTTGGAATGTACAAAC+AGG - chr2_1:37183815-37183834 None:intergenic 35.0%
! GTTGCTTGCATTTTTGTGTT+TGG - chr2_1:37183829-37183848 None:intergenic 35.0%
! AATCACAATGGATTTGCCTA+TGG - chr2_1:37183898-37183917 None:intergenic 35.0%
ACACACGCTAAACATATGTT+TGG + chr2_1:37183975-37183994 Msa0206990:three_prime_UTR 35.0%
CTTTCGGCACAAAAACTCAA+AGG + chr2_1:37180098-37180117 Msa0206990:five_prime_UTR 40.0%
ACAAAAACTCAAAGGACGGT+GGG + chr2_1:37180106-37180125 Msa0206990:five_prime_UTR 40.0%
GGGTTTAGAAAGCTAGATTG+GGG + chr2_1:37180509-37180528 Msa0206990:intron 40.0%
GGTTTAGAAAGCTAGATTGG+GGG + chr2_1:37180510-37180529 Msa0206990:intron 40.0%
GTTTAGAAAGCTAGATTGGG+GGG + chr2_1:37180511-37180530 Msa0206990:intron 40.0%
GTTTCCAAAATTGTAGTGGC+TGG + chr2_1:37181049-37181068 Msa0206990:intron 40.0%
! TAGTCCAGCCACTACAATTT+TGG - chr2_1:37181056-37181075 None:intergenic 40.0%
TTGCAGGGCAGTTTCTTTAT+AGG + chr2_1:37181332-37181351 Msa0206990:intron 40.0%
! TGCATTATTGACTGTGATCC+AGG - chr2_1:37181580-37181599 None:intergenic 40.0%
GTCAATAATGCATGACCACA+TGG + chr2_1:37181588-37181607 Msa0206990:CDS 40.0%
ATAATGCATGACCACATGGA+TGG + chr2_1:37181592-37181611 Msa0206990:CDS 40.0%
ACCACATGACCTCAATACAT+CGG + chr2_1:37181633-37181652 Msa0206990:CDS 40.0%
TTATTTGATACAGACGGGTG+AGG + chr2_1:37181675-37181694 Msa0206990:CDS 40.0%
CTCTTGAGTTTATGAGAGAC+AGG + chr2_1:37181704-37181723 Msa0206990:CDS 40.0%
ATGAGAGACAGGGCAAATAT+TGG + chr2_1:37181715-37181734 Msa0206990:CDS 40.0%
TGAGAGACAGGGCAAATATT+GGG + chr2_1:37181716-37181735 Msa0206990:CDS 40.0%
! AGTAATGGAGGATCTGAAAC+TGG + chr2_1:37181814-37181833 Msa0206990:CDS 40.0%
GACAATAGACAGTTTGTGCA+TGG + chr2_1:37181940-37181959 Msa0206990:CDS 40.0%
AGACAGTTTGTGCATGGATA+TGG + chr2_1:37181946-37181965 Msa0206990:CDS 40.0%
AAGTTTCTTTGTAGCTTCGG+CGG + chr2_1:37182006-37182025 Msa0206990:CDS 40.0%
! TACCTTAGCTTTCCATCACT+TGG - chr2_1:37182048-37182067 None:intergenic 40.0%
GATGGAAAGCTAAGGTATGT+TGG + chr2_1:37182051-37182070 Msa0206990:CDS 40.0%
TTATACGGAGAATGCGTGTT+TGG - chr2_1:37182080-37182099 None:intergenic 40.0%
ACGCATTCTCCGTATAAGAA+AGG + chr2_1:37182083-37182102 Msa0206990:CDS 40.0%
ACAATTAAGTACCAGCTTCC+CGG + chr2_1:37182162-37182181 Msa0206990:CDS 40.0%
GTCAGATGATACAGATACCA+AGG - chr2_1:37182202-37182221 None:intergenic 40.0%
CGAGGATATACAGAACATGA+TGG + chr2_1:37182221-37182240 Msa0206990:CDS 40.0%
GAGAAGGATCACAAAAGCTT+AGG + chr2_1:37182268-37182287 Msa0206990:CDS 40.0%
! GTTCTCAATCTGTGATTTGC+AGG + chr2_1:37182299-37182318 Msa0206990:CDS 40.0%
TAGAAATGGCTGTGGAATTG+AGG + chr2_1:37182505-37182524 Msa0206990:CDS 40.0%
ATAAGATCAGCTGCTTGTGT+CGG - chr2_1:37182695-37182714 None:intergenic 40.0%
GGCTTGTATGACTTACTAAC+AGG + chr2_1:37182820-37182839 Msa0206990:CDS 40.0%
GAAACAATTGCCAATGCTAC+TGG - chr2_1:37182868-37182887 None:intergenic 40.0%
! GCATTGGCAATTGTTTCAAC+CGG + chr2_1:37182871-37182890 Msa0206990:CDS 40.0%
AATGGAAAGTTGTACGGTAC+CGG - chr2_1:37182893-37182912 None:intergenic 40.0%
ACTTTCATTAGATGCTCAGG+TGG - chr2_1:37182969-37182988 None:intergenic 40.0%
TGATGAGAATGAAGCAAGTC+CGG + chr2_1:37183277-37183296 Msa0206990:CDS 40.0%
! CTGCAACCATATTTTGCTCA+TGG - chr2_1:37183343-37183362 None:intergenic 40.0%
TGCAGTAGCAGAGAATAAAG+AGG + chr2_1:37183358-37183377 Msa0206990:CDS 40.0%
GTAGCAGAGAATAAAGAGGT+AGG + chr2_1:37183362-37183381 Msa0206990:CDS 40.0%
GGTAGGTCTTCAAAATAAGC+AGG + chr2_1:37183379-37183398 Msa0206990:CDS 40.0%
CAAAAGGGTTGGAATTCACT+TGG - chr2_1:37183490-37183509 None:intergenic 40.0%
GGGAACACAAAAGACATTTG+GGG - chr2_1:37183564-37183583 None:intergenic 40.0%
GGGGAACACAAAAGACATTT+GGG - chr2_1:37183565-37183584 None:intergenic 40.0%
AAATTGGGGTGGAATGTTAG+GGG - chr2_1:37183585-37183604 None:intergenic 40.0%
CAAATTGGGGTGGAATGTTA+GGG - chr2_1:37183586-37183605 None:intergenic 40.0%
ACAAATTGGGGTGGAATGTT+AGG - chr2_1:37183587-37183606 None:intergenic 40.0%
GGTTGCATGCTTACAAATTG+GGG - chr2_1:37183599-37183618 None:intergenic 40.0%
GGGTTGCATGCTTACAAATT+GGG - chr2_1:37183600-37183619 None:intergenic 40.0%
AGGGTTGCATGCTTACAAAT+TGG - chr2_1:37183601-37183620 None:intergenic 40.0%
TAATAATGCTCAACAGCAGG+AGG + chr2_1:37183634-37183653 Msa0206990:CDS 40.0%
! ATTAGTCTGAGCTGGATGTT+GGG - chr2_1:37183747-37183766 None:intergenic 40.0%
! AATTAGTCTGAGCTGGATGT+TGG - chr2_1:37183748-37183767 None:intergenic 40.0%
GCAACATGAAGAACTATGTG+TGG + chr2_1:37183844-37183863 Msa0206990:three_prime_UTR 40.0%
ATGGTCATTCTTGCATCCAT+AGG + chr2_1:37183879-37183898 Msa0206990:three_prime_UTR 40.0%
TGGAAGGATGTACAACGAAT+TGG + chr2_1:37184054-37184073 Msa0206990:three_prime_UTR 40.0%
CGGCACAAAAACTCAAAGGA+CGG + chr2_1:37180102-37180121 Msa0206990:five_prime_UTR 45.0%
CACAAAAACTCAAAGGACGG+TGG + chr2_1:37180105-37180124 Msa0206990:five_prime_UTR 45.0%
CAACAACAACAACGTGTGCT+AGG + chr2_1:37180202-37180221 Msa0206990:five_prime_UTR 45.0%
TGCACGATCTCAGTCATACA+TGG + chr2_1:37181119-37181138 Msa0206990:intron 45.0%
CCAGGCTGGTATTCATTTCT+AGG - chr2_1:37181562-37181581 None:intergenic 45.0%
CCTAGAAATGAATACCAGCC+TGG + chr2_1:37181559-37181578 Msa0206990:CDS 45.0%
! TTATTGACTGTGATCCAGGC+TGG - chr2_1:37181576-37181595 None:intergenic 45.0%
TCCGATGTATTGAGGTCATG+TGG - chr2_1:37181637-37181656 None:intergenic 45.0%
CATGTCTATGCCGTCAATGA+TGG + chr2_1:37181843-37181862 Msa0206990:CDS 45.0%
GAGTTTGACAGAAGCAACTG+CGG + chr2_1:37181880-37181899 Msa0206990:CDS 45.0%
GGAAAGCTAAGGTATGTTGG+AGG + chr2_1:37182054-37182073 Msa0206990:CDS 45.0%
CAATTAAGTACCAGCTTCCC+GGG + chr2_1:37182163-37182182 Msa0206990:CDS 45.0%
AATTAAGTACCAGCTTCCCG+GGG + chr2_1:37182164-37182183 Msa0206990:CDS 45.0%
GGTATCTGTATCATCTGACG+AGG + chr2_1:37182203-37182222 Msa0206990:CDS 45.0%
GATTTGCAGGATGCTCAGTT+TGG + chr2_1:37182312-37182331 Msa0206990:CDS 45.0%
TGCTGTTAATGGCATGGACT+TGG + chr2_1:37182377-37182396 Msa0206990:CDS 45.0%
AATTGGAGGGGGATCATTCT+TGG + chr2_1:37182457-37182476 Msa0206990:CDS 45.0%
GTACAATCGGGGAGTAGAAA+TGG + chr2_1:37182491-37182510 Msa0206990:CDS 45.0%
GAGTCTCAAGTCATTGAAGC+TGG + chr2_1:37182527-37182546 Msa0206990:CDS 45.0%
GACACAAGCAGCTGATCTTA+TGG + chr2_1:37182694-37182713 Msa0206990:CDS 45.0%
ATGAGAACAAAGCATGCCCA+TGG - chr2_1:37182776-37182795 None:intergenic 45.0%
AATGAAGCAAGTCCGGTAAC+AGG + chr2_1:37183284-37183303 Msa0206990:CDS 45.0%
!! TTGCTCATGGCTTTGTTGCT+CGG - chr2_1:37183330-37183349 None:intergenic 45.0%
! CATGATGGAGGATACCAGAT+AGG + chr2_1:37183464-37183483 Msa0206990:CDS 45.0%
TGGAATTCACTTGGCCTATC+TGG - chr2_1:37183481-37183500 None:intergenic 45.0%
GGGGGAACACAAAAGACATT+TGG - chr2_1:37183566-37183585 None:intergenic 45.0%
AATTGGGGTGGAATGTTAGG+GGG - chr2_1:37183584-37183603 None:intergenic 45.0%
TGCATGCTTACAAATTGGGG+TGG - chr2_1:37183596-37183615 None:intergenic 45.0%
ACAACTGAGGTTGAAGACGA+CGG - chr2_1:37183722-37183741 None:intergenic 45.0%
TTAGTCTGAGCTGGATGTTG+GGG - chr2_1:37183746-37183765 None:intergenic 45.0%
TATAGCAGTGAAGGGATGCA+CGG + chr2_1:37183935-37183954 Msa0206990:three_prime_UTR 45.0%
! GTGATTTGTACCATGCATGG+TGG - chr2_1:37184094-37184113 None:intergenic 45.0%
!! TAATTTATTACATTAAAATA+TGG + chr2_1:37181163-37181182 Msa0206990:intron 5.0%
TGGGTGCAACATCAACGTGT+GGG + chr2_1:37180125-37180144 Msa0206990:five_prime_UTR 50.0%
TCCAAGAACTTCGCTGCATC+AGG + chr2_1:37181918-37181937 Msa0206990:CDS 50.0%
TCCTGATGCAGCGAAGTTCT+TGG - chr2_1:37181922-37181941 None:intergenic 50.0%
TCGGCGGTAGAATATTGCCA+CGG + chr2_1:37182022-37182041 Msa0206990:CDS 50.0%
ATATTGCCACGGCCAAGTGA+TGG + chr2_1:37182033-37182052 Msa0206990:CDS 50.0%
! GGCCAAGTGATGGAAAGCTA+AGG + chr2_1:37182043-37182062 Msa0206990:CDS 50.0%
! AAGGCATCAAGATCTTCCCC+GGG - chr2_1:37182183-37182202 None:intergenic 50.0%
! CAAGGCATCAAGATCTTCCC+CGG - chr2_1:37182184-37182203 None:intergenic 50.0%
TCAGTTTGGTCTCACGTCCA+TGG + chr2_1:37182326-37182345 Msa0206990:CDS 50.0%
CAGTTTGGTCTCACGTCCAT+GGG + chr2_1:37182327-37182346 Msa0206990:CDS 50.0%
GACTTCAGAATCATCGCCCA+TGG - chr2_1:37182346-37182365 None:intergenic 50.0%
AAGCAAGTCCGGTAACAGGT+TGG + chr2_1:37183288-37183307 Msa0206990:CDS 50.0%
AGCAAGTCCGGTAACAGGTT+GGG + chr2_1:37183289-37183308 Msa0206990:CDS 50.0%
AATGCTGGGGTGCAACATGA+TGG + chr2_1:37183449-37183468 Msa0206990:CDS 50.0%
GTGGGTGCAACATCAACGTG+TGG + chr2_1:37180124-37180143 Msa0206990:five_prime_UTR 55.0%
AGCTTTCCATCACTTGGCCG+TGG - chr2_1:37182042-37182061 None:intergenic 55.0%
CGGGGAAGATCTTGATGCCT+TGG + chr2_1:37182182-37182201 Msa0206990:CDS 55.0%
TCGGGGAGTAGAAATGGCTG+TGG + chr2_1:37182497-37182516 Msa0206990:CDS 55.0%
AGATCAGCTGCTTGTGTCGG+TGG - chr2_1:37182692-37182711 None:intergenic 55.0%
! AAGTCCGGTAACAGGTTGGG+AGG + chr2_1:37183292-37183311 Msa0206990:CDS 55.0%
GCAACCTCCCAACCTGTTAC+CGG - chr2_1:37183299-37183318 None:intergenic 55.0%
GACGGCGGCGGCAATATATT+CGG - chr2_1:37183704-37183723 None:intergenic 55.0%
ACTGAGGTTGAAGACGACGG+CGG - chr2_1:37183719-37183738 None:intergenic 55.0%
TGGATGTTGGGGCACAACTG+AGG - chr2_1:37183735-37183754 None:intergenic 55.0%
ACTGTCTGCACCACCATGCA+TGG + chr2_1:37184081-37184100 Msa0206990:three_prime_UTR 55.0%
CAAGATCTTCCCCGGGAAGC+TGG - chr2_1:37182176-37182195 None:intergenic 60.0%
GCTGGGGTGCAACATGATGG+AGG + chr2_1:37183452-37183471 Msa0206990:CDS 60.0%
GAGGTTGAAGACGACGGCGG+CGG - chr2_1:37183716-37183735 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 37180068 37184113 37180068 ID=Msa0206990;Name=Msa0206990
chr2_1 mRNA 37180068 37184113 37180068 ID=Msa0206990-mRNA-1;Parent=Msa0206990;Name=Msa0206990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=471|0.75|0.6|1|0.75|0.6|5|335|548
chr2_1 exon 37180068 37180323 37180068 ID=Msa0206990-mRNA-1:exon:12026;Parent=Msa0206990-mRNA-1
chr2_1 exon 37181338 37182566 37181338 ID=Msa0206990-mRNA-1:exon:12027;Parent=Msa0206990-mRNA-1
chr2_1 exon 37182680 37182715 37182680 ID=Msa0206990-mRNA-1:exon:12028;Parent=Msa0206990-mRNA-1
chr2_1 exon 37182820 37182892 37182820 ID=Msa0206990-mRNA-1:exon:12029;Parent=Msa0206990-mRNA-1
chr2_1 exon 37183255 37184113 37183255 ID=Msa0206990-mRNA-1:exon:12030;Parent=Msa0206990-mRNA-1
chr2_1 five_prime_UTR 37180068 37180323 37180068 ID=Msa0206990-mRNA-1:five_prime_utr;Parent=Msa0206990-mRNA-1
chr2_1 five_prime_UTR 37181338 37181552 37181338 ID=Msa0206990-mRNA-1:five_prime_utr;Parent=Msa0206990-mRNA-1
chr2_1 CDS 37181553 37182566 37181553 ID=Msa0206990-mRNA-1:cds;Parent=Msa0206990-mRNA-1
chr2_1 CDS 37182680 37182715 37182680 ID=Msa0206990-mRNA-1:cds;Parent=Msa0206990-mRNA-1
chr2_1 CDS 37182820 37182892 37182820 ID=Msa0206990-mRNA-1:cds;Parent=Msa0206990-mRNA-1
chr2_1 CDS 37183255 37183778 37183255 ID=Msa0206990-mRNA-1:cds;Parent=Msa0206990-mRNA-1
chr2_1 three_prime_UTR 37183779 37184113 37183779 ID=Msa0206990-mRNA-1:three_prime_utr;Parent=Msa0206990-mRNA-1
Gene Sequence

>Msa0206990

ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAATAATGCATGACCACATGGATGGAATTTATATGAGTAGAAGACCACATGACCTCAATACATCGGAAGTTAAACCTGTACAGCATTATTTGATACAGACGGGTGAGGAATTCTCTCTTGAGTTTATGAGAGACAGGGCAAATATTGGGAAGCCTGTATTTTCGAATGTCAGTGATCCTAATTATACAACTGGTTATATGGAACTGAAAGGCATTTTAGGAATCAGTAATGGAGGATCTGAAACTGGATCAGACATGTCTATGCCGTCAATGATGGATAAATATCCTAAAGAGTTTGACAGAAGCAACTGCGGATCGATTCGATCAATTCCAAGAACTTCGCTGCATCAGGACAATAGACAGTTTGTGCATGGATATGGCTCTTCCGAAAGTTATGATAACTCATCAATTATGATGAAGTTTCTTTGTAGCTTCGGCGGTAGAATATTGCCACGGCCAAGTGATGGAAAGCTAAGGTATGTTGGAGGCCAAACACGCATTCTCCGTATAAGAAAGGACATATCTTATCACGAGCTTATTCAAAAAGCGTTGATGATCTATAATCAGGTTCAGACAATTAAGTACCAGCTTCCCGGGGAAGATCTTGATGCCTTGGTATCTGTATCATCTGACGAGGATATACAGAACATGATGGGAGAATGTAATCATCTAGAAGATAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATCTGTGATTTGCAGGATGCTCAGTTTGGTCTCACGTCCATGGGCGATGATTCTGAAGTCCAGTATGTTATTGCTGTTAATGGCATGGACTTGGAGTCGAGAAAAAACTCAAATATGGTTGGTTTGAGCTTTTCTGCAAATGATATAAATGAATTGGAGGGGGATCATTCTTGGTGTATAAATCAGTACAATCGGGGAGTAGAAATGGCTGTGGAATTGAGGAGTCTCAAGTCATTGAAGCTGGAAATCAAGAGTAGAAATGCTACTGCACCACCGACACAAGCAGCTGATCTTATGGGCTTGTATGACTTACTAACAGGTGCATCTGAATTTGATGAAAATCCAGTAGCATTGGCAATTGTTTCAACCGAAAATTCTTTAAATTCCAACAATGATGAGAATGAAGCAAGTCCGGTAACAGGTTGGGAGGTTGCACTTTTTACCGAGCAACAAAGCCATGAGCAAAATATGGTTGCAGTAGCAGAGAATAAAGAGGTAGGTCTTCAAAATAAGCAGGATGACGAAGTTGACATGTTAAAACTTGAGGGTTTATATATTGAAGCTAATGCTGGGGTGCAACATGATGGAGGATACCAGATAGGCCAAGTGAATTCCAACCCTTTTGATTTTCAGACTATTCATGATCCTACCCAATATAACATGGCATTGGAAGTATCCCCAAATGTCTTTTGTGTTCCCCCTAACATTCCACCCCAATTTGTAAGCATGCAACCCTACCAAGTTTCTAATAATAATGCTCAACAGCAGGAGGAACCATTCACAATGATTAAAAAATCAACCAATCCATTTGATGAACCGAATATATTGCCGCCGCCGTCGTCTTCAACCTCAGTTGTGCCCCAACATCCAGCTCAGACTAATTATTCTGATTAG
Protein sequence

>Msa0206990

MDPRNEYQPGSQSIMHDHMDGIYMSRRPHDLNTSEVKPVQHYLIQTGEEFSLEFMRDRANIGKPVFSNVSDPNYTTGYMELKGILGISNGGSETGSDMSMPSMMDKYPKEFDRSNCGSIRSIPRTSLHQDNRQFVHGYGSSESYDNSSIMMKFLCSFGGRILPRPSDGKLRYVGGQTRILRIRKDISYHELIQKALMIYNQVQTIKYQLPGEDLDALVSVSSDEDIQNMMGECNHLEDREGSQKLRMFLFSICDLQDAQFGLTSMGDDSEVQYVIAVNGMDLESRKNSNMVGLSFSANDINELEGDHSWCINQYNRGVEMAVELRSLKSLKLEIKSRNATAPPTQAADLMGLYDLLTGASEFDENPVALAIVSTENSLNSNNDENEASPVTGWEVALFTEQQSHEQNMVAVAENKEVGLQNKQDDEVDMLKLEGLYIEANAGVQHDGGYQIGQVNSNPFDFQTIHDPTQYNMALEVSPNVFCVPPNIPPQFVSMQPYQVSNNNAQQQEEPFTMIKKSTNPFDEPNILPPPSSSTSVVPQHPAQTNYSD*