Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252240 | XP_039686569.1 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252240 | A0A396J889 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0252240 | -0.864657 | 1.038314e-64 | -8.615850e-47 |
| Msa0006880 | Msa0252240 | 0.810126 | 1.345860e-50 | -8.615850e-47 |
| Msa0007850 | Msa0252240 | 0.811285 | 7.556500e-51 | -8.615850e-47 |
| Msa0015680 | Msa0252240 | 0.818478 | 1.919891e-52 | -8.615850e-47 |
| Msa0026660 | Msa0252240 | 0.842289 | 2.831444e-58 | -8.615850e-47 |
| Msa0027580 | Msa0252240 | 0.858944 | 5.816060e-63 | -8.615850e-47 |
| Msa0036370 | Msa0252240 | 0.836159 | 1.102013e-56 | -8.615850e-47 |
| Msa0043730 | Msa0252240 | 0.808515 | 2.981660e-50 | -8.615850e-47 |
| Msa0055100 | Msa0252240 | 0.802582 | 5.240049e-49 | -8.615850e-47 |
| Msa0057370 | Msa0252240 | 0.810570 | 1.079548e-50 | -8.615850e-47 |
| Msa0070250 | Msa0252240 | 0.817816 | 2.709348e-52 | -8.615850e-47 |
| Msa0072170 | Msa0252240 | 0.859368 | 4.340885e-63 | -8.615850e-47 |
| Msa0075340 | Msa0252240 | 0.858006 | 1.107759e-62 | -8.615850e-47 |
| Msa0076780 | Msa0252240 | 0.810022 | 1.417280e-50 | -8.615850e-47 |
| Msa0077010 | Msa0252240 | 0.800559 | 1.361396e-48 | -8.615850e-47 |
| Msa0090030 | Msa0252240 | 0.826800 | 2.223363e-54 | -8.615850e-47 |
| Msa0094010 | Msa0252240 | 0.809252 | 2.074702e-50 | -8.615850e-47 |
| Msa0097950 | Msa0252240 | 0.806916 | 6.521342e-50 | -8.615850e-47 |
| Msa0099510 | Msa0252240 | 0.804752 | 1.857717e-49 | -8.615850e-47 |
| Msa0100800 | Msa0252240 | 0.849691 | 2.749223e-60 | -8.615850e-47 |
| Msa0104610 | Msa0252240 | 0.809715 | 1.649836e-50 | -8.615850e-47 |
| Msa0108870 | Msa0252240 | 0.832866 | 7.402476e-56 | -8.615850e-47 |
| Msa0120540 | Msa0252240 | 0.863502 | 2.378878e-64 | -8.615850e-47 |
| Msa0127040 | Msa0252240 | 0.829745 | 4.334027e-55 | -8.615850e-47 |
| Msa0131450 | Msa0252240 | 0.815034 | 1.136788e-51 | -8.615850e-47 |
| Msa0138160 | Msa0252240 | 0.840315 | 9.364349e-58 | -8.615850e-47 |
| Msa0140170 | Msa0252240 | 0.822643 | 2.122913e-53 | -8.615850e-47 |
| Msa0140400 | Msa0252240 | 0.829031 | 6.463391e-55 | -8.615850e-47 |
| Msa0140520 | Msa0252240 | -0.809153 | 2.178455e-50 | -8.615850e-47 |
| Msa0145150 | Msa0252240 | 0.821578 | 3.748401e-53 | -8.615850e-47 |
| Msa0165440 | Msa0252240 | 0.802788 | 4.750164e-49 | -8.615850e-47 |
| Msa0166750 | Msa0252240 | 0.832172 | 1.100116e-55 | -8.615850e-47 |
| Msa0173330 | Msa0252240 | 0.811455 | 6.941511e-51 | -8.615850e-47 |
| Msa0174000 | Msa0252240 | 0.800568 | 1.356173e-48 | -8.615850e-47 |
| Msa0177230 | Msa0252240 | 0.811294 | 7.524059e-51 | -8.615850e-47 |
| Msa0177270 | Msa0252240 | 0.830636 | 2.626111e-55 | -8.615850e-47 |
| Msa0182280 | Msa0252240 | 0.816870 | 4.423914e-52 | -8.615850e-47 |
| Msa0198520 | Msa0252240 | 0.815972 | 7.029241e-52 | -8.615850e-47 |
| Msa0198530 | Msa0252240 | 0.810540 | 1.095691e-50 | -8.615850e-47 |
| Msa0198940 | Msa0252240 | 0.809872 | 1.526551e-50 | -8.615850e-47 |
| Msa0206990 | Msa0252240 | 0.855806 | 4.927690e-62 | -8.615850e-47 |
| Msa0208000 | Msa0252240 | 0.806571 | 7.712529e-50 | -8.615850e-47 |
| Msa0208810 | Msa0252240 | 0.823261 | 1.523809e-53 | -8.615850e-47 |
| Msa0211650 | Msa0252240 | 0.874037 | 9.231393e-68 | -8.615850e-47 |
| Msa0212750 | Msa0252240 | -0.804188 | 2.434834e-49 | -8.615850e-47 |
| Msa0220080 | Msa0252240 | 0.817746 | 2.809925e-52 | -8.615850e-47 |
| Msa0221600 | Msa0252240 | 0.818357 | 2.045061e-52 | -8.615850e-47 |
| Msa0227310 | Msa0252240 | -0.803414 | 3.526123e-49 | -8.615850e-47 |
| Msa0229940 | Msa0252240 | 0.809558 | 1.782948e-50 | -8.615850e-47 |
| Msa0239940 | Msa0252240 | 0.805212 | 1.488732e-49 | -8.615850e-47 |
| Msa0241740 | Msa0252240 | 0.814507 | 1.487133e-51 | -8.615850e-47 |
| Msa0252240 | Msa0265160 | 0.829498 | 4.978488e-55 | -8.615850e-47 |
| Msa0252240 | Msa0266210 | 0.854098 | 1.543197e-61 | -8.615850e-47 |
| Msa0252240 | Msa0274630 | 0.800401 | 1.466642e-48 | -8.615850e-47 |
| Msa0252240 | Msa0287670 | 0.857571 | 1.491115e-62 | -8.615850e-47 |
| Msa0252240 | Msa0288730 | 0.800396 | 1.469677e-48 | -8.615850e-47 |
| Msa0252240 | Msa0291520 | 0.841348 | 5.018991e-58 | -8.615850e-47 |
| Msa0252240 | Msa0295000 | -0.819295 | 1.252148e-52 | -8.615850e-47 |
| Msa0252240 | Msa0308220 | 0.824579 | 7.475932e-54 | -8.615850e-47 |
| Msa0252240 | Msa0321170 | 0.800659 | 1.299097e-48 | -8.615850e-47 |
| Msa0252240 | Msa0363170 | 0.801451 | 8.950523e-49 | -8.615850e-47 |
| Msa0252240 | Msa0381700 | 0.808003 | 3.833483e-50 | -8.615850e-47 |
| Msa0252240 | Msa0384880 | 0.815521 | 8.860722e-52 | -8.615850e-47 |
| Msa0252240 | Msa0387910 | 0.832819 | 7.602489e-56 | -8.615850e-47 |
| Msa0252240 | Msa0403190 | 0.814038 | 1.888629e-51 | -8.615850e-47 |
| Msa0252240 | Msa0404700 | 0.818286 | 2.122161e-52 | -8.615850e-47 |
| Msa0252240 | Msa0421260 | 0.814490 | 1.500071e-51 | -8.615850e-47 |
| Msa0252240 | Msa0426810 | 0.815970 | 7.034499e-52 | -8.615850e-47 |
| Msa0252240 | Msa0436200 | 0.831024 | 2.110334e-55 | -8.615850e-47 |
| Msa0252240 | Msa0437510 | 0.802965 | 4.367182e-49 | -8.615850e-47 |
| Msa0252240 | Msa0439890 | 0.804273 | 2.338294e-49 | -8.615850e-47 |
| Msa0252240 | Msa0462540 | 0.807861 | 4.109516e-50 | -8.615850e-47 |
| Msa0252240 | Msa0467220 | 0.815463 | 9.127771e-52 | -8.615850e-47 |
| Msa0252240 | Msa0474700 | 0.845804 | 3.232038e-59 | -8.615850e-47 |
| Msa0252240 | Msa0479330 | 0.814109 | 1.820975e-51 | -8.615850e-47 |
| Msa0252240 | Msa0506940 | 0.803338 | 3.656154e-49 | -8.615850e-47 |
| Msa0252240 | Msa0511490 | 0.804704 | 1.900818e-49 | -8.615850e-47 |
| Msa0252240 | Msa0513440 | 0.802957 | 4.385025e-49 | -8.615850e-47 |
| Msa0252240 | Msa0519390 | 0.812939 | 3.293507e-51 | -8.615850e-47 |
| Msa0252240 | Msa0524590 | 0.810277 | 1.248723e-50 | -8.615850e-47 |
| Msa0252240 | Msa0527910 | 0.817635 | 2.977066e-52 | -8.615850e-47 |
| Msa0252240 | Msa0533960 | -0.801646 | 8.162518e-49 | -8.615850e-47 |
| Msa0252240 | Msa0534080 | 0.817217 | 3.697048e-52 | -8.615850e-47 |
| Msa0252240 | Msa0536790 | 0.809786 | 1.593186e-50 | -8.615850e-47 |
| Msa0252240 | Msa0537770 | 0.803374 | 3.593763e-49 | -8.615850e-47 |
| Msa0252240 | Msa0550570 | 0.828495 | 8.708299e-55 | -8.615850e-47 |
| Msa0252240 | Msa0578090 | 0.849873 | 2.444786e-60 | -8.615850e-47 |
| Msa0252240 | Msa0579370 | 0.822199 | 2.691264e-53 | -8.615850e-47 |
| Msa0252240 | Msa0586850 | 0.832929 | 7.141291e-56 | -8.615850e-47 |
| Msa0252240 | Msa0590650 | 0.803392 | 3.562870e-49 | -8.615850e-47 |
| Msa0252240 | Msa0602120 | 0.802671 | 5.021516e-49 | -8.615850e-47 |
| Msa0252240 | Msa0602370 | 0.805692 | 1.180843e-49 | -8.615850e-47 |
| Msa0252240 | Msa0607510 | 0.812726 | 3.666747e-51 | -8.615850e-47 |
| Msa0252240 | Msa0608910 | 0.810895 | 9.182365e-51 | -8.615850e-47 |
| Msa0252240 | Msa0614990 | 0.812136 | 4.935217e-51 | -8.615850e-47 |
| Msa0252240 | Msa0618930 | 0.807181 | 5.730191e-50 | -8.615850e-47 |
| Msa0252240 | Msa0619920 | 0.809710 | 1.653955e-50 | -8.615850e-47 |
| Msa0252240 | Msa0626680 | 0.838269 | 3.179526e-57 | -8.615850e-47 |
| Msa0252240 | Msa0626940 | 0.822840 | 1.910062e-53 | -8.615850e-47 |
| Msa0252240 | Msa0643250 | 0.817258 | 3.619414e-52 | -8.615850e-47 |
| Msa0252240 | Msa0646130 | 0.814676 | 1.364986e-51 | -8.615850e-47 |
| Msa0252240 | Msa0649410 | 0.829705 | 4.433051e-55 | -8.615850e-47 |
| Msa0252240 | Msa0649450 | 0.811610 | 6.422929e-51 | -8.615850e-47 |
| Msa0252240 | Msa0656580 | 0.814320 | 1.635961e-51 | -8.615850e-47 |
| Msa0252240 | Msa0659990 | 0.807007 | 6.237637e-50 | -8.615850e-47 |
| Msa0252240 | Msa0664760 | 0.835923 | 1.264922e-56 | -8.615850e-47 |
| Msa0252240 | Msa0679100 | 0.802107 | 6.563146e-49 | -8.615850e-47 |
| Msa0252240 | Msa0683140 | 0.807557 | 4.768338e-50 | -8.615850e-47 |
| Msa0252240 | Msa0706390 | 0.811487 | 6.832216e-51 | -8.615850e-47 |
| Msa0252240 | Msa0707390 | 0.814741 | 1.320139e-51 | -8.615850e-47 |
| Msa0252240 | Msa0711490 | 0.815732 | 7.949383e-52 | -8.615850e-47 |
| Msa0252240 | Msa0720370 | 0.811139 | 8.129337e-51 | -8.615850e-47 |
| Msa0252240 | Msa0744090 | 0.817317 | 3.511052e-52 | -8.615850e-47 |
| Msa0252240 | Msa0744100 | 0.806067 | 9.846742e-50 | -8.615850e-47 |
| Msa0252240 | Msa0781710 | 0.814226 | 1.716247e-51 | -8.615850e-47 |
| Msa0252240 | Msa0814250 | 0.820125 | 8.090759e-53 | -8.615850e-47 |
| Msa0252240 | Msa0824730 | 0.813788 | 2.143511e-51 | -8.615850e-47 |
| Msa0252240 | Msa0825270 | 0.819055 | 1.419504e-52 | -8.615850e-47 |
| Msa0252240 | Msa0825280 | 0.817835 | 2.682868e-52 | -8.615850e-47 |
| Msa0252240 | Msa0837650 | 0.800533 | 1.378403e-48 | -8.615850e-47 |
| Msa0252240 | Msa0839200 | 0.809462 | 1.869729e-50 | -8.615850e-47 |
| Msa0252240 | Msa0850710 | 0.805910 | 1.062498e-49 | -8.615850e-47 |
| Msa0252240 | Msa0851470 | 0.813618 | 2.336491e-51 | -8.615850e-47 |
| Msa0252240 | Msa0861830 | 0.803743 | 3.014127e-49 | -8.615850e-47 |
| Msa0252240 | Msa0869010 | 0.821492 | 3.924295e-53 | -8.615850e-47 |
| Msa0252240 | Msa0899350 | 0.802922 | 4.458451e-49 | -8.615850e-47 |
| Msa0252240 | Msa0901450 | 0.826373 | 2.811166e-54 | -8.615850e-47 |
| Msa0252240 | Msa0905380 | 0.807319 | 5.357985e-50 | -8.615850e-47 |
| Msa0252240 | Msa0937330 | 0.800468 | 1.421259e-48 | -8.615850e-47 |
| Msa0252240 | Msa0944730 | 0.806250 | 9.009626e-50 | -8.615850e-47 |
| Msa0252240 | Msa0945100 | 0.811362 | 7.270902e-51 | -8.615850e-47 |
| Msa0252240 | Msa0965020 | 0.809037 | 2.306558e-50 | -8.615850e-47 |
| Msa0252240 | Msa0976330 | 0.816683 | 4.874678e-52 | -8.615850e-47 |
| Msa0252240 | Msa0981430 | 0.842138 | 3.104761e-58 | -8.615850e-47 |
| Msa0252240 | Msa0993530 | 0.811270 | 7.613783e-51 | -8.615850e-47 |
| Msa0252240 | Msa1001350 | 0.821940 | 3.089917e-53 | -8.615850e-47 |
| Msa0252240 | Msa1003440 | 0.804645 | 1.955363e-49 | -8.615850e-47 |
| Msa0252240 | Msa1027250 | 0.806737 | 7.114454e-50 | -8.615850e-47 |
| Msa0252240 | Msa1029970 | 0.802473 | 5.516559e-49 | -8.615850e-47 |
| Msa0252240 | Msa1030930 | 0.802130 | 6.492427e-49 | -8.615850e-47 |
| Msa0252240 | Msa1070050 | 0.801569 | 8.462605e-49 | -8.615850e-47 |
| Msa0252240 | Msa1073400 | 0.809378 | 1.949578e-50 | -8.615850e-47 |
| Msa0252240 | Msa1083880 | 0.827175 | 1.808889e-54 | -8.615850e-47 |
| Msa0252240 | Msa1088290 | 0.814530 | 1.470054e-51 | -8.615850e-47 |
| Msa0252240 | Msa1093330 | 0.851499 | 8.529304e-61 | -8.615850e-47 |
| Msa0252240 | Msa1114040 | 0.824978 | 6.020077e-54 | -8.615850e-47 |
| Msa0252240 | Msa1130210 | -0.804163 | 2.464408e-49 | -8.615850e-47 |
| Msa0252240 | Msa1160360 | 0.801578 | 8.428955e-49 | -8.615850e-47 |
| Msa0252240 | Msa1172130 | -0.810756 | 9.841807e-51 | -8.615850e-47 |
| Msa0252240 | Msa1178050 | 0.810358 | 1.199362e-50 | -8.615850e-47 |
| Msa0252240 | Msa1179980 | 0.805798 | 1.121802e-49 | -8.615850e-47 |
| Msa0252240 | Msa1181170 | -0.831674 | 1.460350e-55 | -8.615850e-47 |
| Msa0252240 | Msa1182640 | 0.808064 | 3.720401e-50 | -8.615850e-47 |
| Msa0252240 | Msa1198880 | 0.829111 | 6.178775e-55 | -8.615850e-47 |
| Msa0252240 | Msa1201830 | 0.802626 | 5.132081e-49 | -8.615850e-47 |
| Msa0252240 | Msa1203900 | 0.801782 | 7.654356e-49 | -8.615850e-47 |
| Msa0252240 | Msa1205850 | 0.816076 | 6.662057e-52 | -8.615850e-47 |
| Msa0252240 | Msa1207730 | 0.805138 | 1.542371e-49 | -8.615850e-47 |
| Msa0252240 | Msa1223330 | 0.824200 | 9.179944e-54 | -8.615850e-47 |
| Msa0252240 | Msa1226610 | 0.819569 | 1.084234e-52 | -8.615850e-47 |
| Msa0252240 | Msa1229850 | 0.805025 | 1.629147e-49 | -8.615850e-47 |
| Msa0252240 | Msa1233950 | 0.817556 | 3.101908e-52 | -8.615850e-47 |
| Msa0252240 | Msa1253810 | 0.812004 | 5.272568e-51 | -8.615850e-47 |
| Msa0252240 | Msa1270620 | 0.800278 | 1.553563e-48 | -8.615850e-47 |
| Msa0252240 | Msa1272520 | 0.819736 | 9.931743e-53 | -8.615850e-47 |
| Msa0252240 | Msa1280620 | 0.839960 | 1.158966e-57 | -8.615850e-47 |
| Msa0252240 | Msa1294960 | 0.847385 | 1.195732e-59 | -8.615850e-47 |
| Msa0252240 | Msa1296300 | 0.800866 | 1.178970e-48 | -8.615850e-47 |
| Msa0252240 | Msa1306990 | 0.806766 | 7.012743e-50 | -8.615850e-47 |
| Msa0252240 | Msa1310660 | 0.839383 | 1.637808e-57 | -8.615850e-47 |
| Msa0252240 | Msa1317270 | 0.800226 | 1.592081e-48 | -8.615850e-47 |
| Msa0252240 | Msa1330890 | -0.802058 | 6.715927e-49 | -8.615850e-47 |
| Msa0252240 | Msa1333970 | 0.815475 | 9.071975e-52 | -8.615850e-47 |
| Msa0252240 | Msa1340830 | 0.824125 | 9.562911e-54 | -8.615850e-47 |
| Msa0252240 | Msa1350690 | 0.856848 | 2.437115e-62 | -8.615850e-47 |
| Msa0252240 | Msa1355700 | 0.818874 | 1.560799e-52 | -8.615850e-47 |
| Msa0252240 | Msa1360280 | 0.834077 | 3.692444e-56 | -8.615850e-47 |
| Msa0252240 | Msa1363700 | 0.832292 | 1.027243e-55 | -8.615850e-47 |
| Msa0252240 | Msa1364060 | 0.814921 | 1.204568e-51 | -8.615850e-47 |
| Msa0252240 | Msa1365860 | 0.817301 | 3.540970e-52 | -8.615850e-47 |
| Msa0252240 | Msa1369490 | 0.822401 | 2.416281e-53 | -8.615850e-47 |
| Msa0252240 | Msa1383350 | 0.822155 | 2.756130e-53 | -8.615850e-47 |
| Msa0252240 | Msa1390230 | 0.824333 | 8.543985e-54 | -8.615850e-47 |
| Msa0252240 | Msa1393800 | 0.806227 | 9.114814e-50 | -8.615850e-47 |
| Msa0252240 | Msa1422840 | 0.805887 | 1.074223e-49 | -8.615850e-47 |
| Msa0252240 | Msa1422910 | 0.812232 | 4.702530e-51 | -8.615850e-47 |
| Msa0252240 | Msa1426920 | 0.818070 | 2.375012e-52 | -8.615850e-47 |
| Msa0252240 | Msa1438450 | 0.801430 | 9.038732e-49 | -8.615850e-47 |
| Msa0252240 | Msa1449910 | 0.810572 | 1.078182e-50 | -8.615850e-47 |
| Msa0252240 | Msa1452470 | 0.800105 | 1.684358e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252240 | MtrunA17_Chr2g0310781 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 619 |
| Msa0252240 | MtrunA17_Chr2g0310761 | 62.145 | 317 | 104 | 7 | 1 | 304 | 9 | 322 | 4.37e-119 | 372 |
| Msa0252240 | MtrunA17_Chr8g0357611 | 55.486 | 319 | 126 | 5 | 1 | 304 | 15 | 332 | 8.65e-101 | 326 |
| Msa0252240 | MtrunA17_Chr1g0196631 | 37.888 | 322 | 147 | 9 | 30 | 298 | 23 | 344 | 3.07e-48 | 175 |
| Msa0252240 | MtrunA17_Chr6g0461841 | 42.248 | 258 | 112 | 6 | 78 | 298 | 84 | 341 | 6.59e-48 | 174 |
| Msa0252240 | MtrunA17_Chr2g0305141 | 45.355 | 183 | 91 | 3 | 151 | 324 | 171 | 353 | 1.91e-38 | 146 |
| Msa0252240 | MtrunA17_Chr4g0065211 | 53.957 | 139 | 58 | 3 | 146 | 280 | 147 | 283 | 2.16e-38 | 146 |
| Msa0252240 | MtrunA17_Chr4g0072741 | 50.350 | 143 | 69 | 2 | 139 | 281 | 40 | 180 | 1.90e-29 | 120 |
| Msa0252240 | MtrunA17_Chr4g0048541 | 46.018 | 113 | 58 | 2 | 141 | 250 | 19 | 131 | 1.27e-27 | 112 |
| Msa0252240 | MtrunA17_Chr2g0277031 | 39.007 | 141 | 74 | 3 | 151 | 280 | 13 | 152 | 1.96e-24 | 102 |
| Msa0252240 | MtrunA17_Chr6g0483611 | 38.961 | 154 | 83 | 4 | 151 | 295 | 59 | 210 | 4.98e-24 | 103 |
| Msa0252240 | MtrunA17_Chr2g0279951 | 43.519 | 108 | 59 | 2 | 145 | 250 | 38 | 145 | 1.61e-22 | 98.2 |
| Msa0252240 | MtrunA17_Chr4g0058551 | 49.451 | 91 | 44 | 1 | 142 | 232 | 2 | 90 | 2.32e-22 | 92.8 |
| Msa0252240 | MtrunA17_Chr4g0049441 | 41.284 | 109 | 60 | 2 | 145 | 250 | 33 | 140 | 1.42e-21 | 95.5 |
| Msa0252240 | MtrunA17_Chr5g0412711 | 44.000 | 100 | 55 | 1 | 151 | 249 | 16 | 115 | 1.60e-21 | 91.7 |
| Msa0252240 | MtrunA17_Chr1g0209151 | 40.351 | 114 | 63 | 2 | 142 | 250 | 46 | 159 | 5.10e-21 | 94.7 |
| Msa0252240 | MtrunA17_Chr8g0392371 | 35.948 | 153 | 78 | 6 | 106 | 250 | 15 | 155 | 8.29e-19 | 87.8 |
| Msa0252240 | MtrunA17_Chr3g0117061 | 43.902 | 82 | 46 | 0 | 151 | 232 | 9 | 90 | 8.86e-17 | 78.2 |
| Msa0252240 | MtrunA17_Chr5g0428011 | 39.130 | 115 | 61 | 4 | 143 | 252 | 21 | 131 | 4.52e-16 | 79.0 |
| Msa0252240 | MtrunA17_Chr5g0440771 | 33.945 | 109 | 63 | 3 | 151 | 252 | 4 | 110 | 2.03e-11 | 62.8 |
| Msa0252240 | MtrunA17_Chr5g0428071 | 32.800 | 125 | 76 | 3 | 151 | 267 | 43 | 167 | 4.36e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252240 | AT1G79570.3 | 51.524 | 328 | 141 | 7 | 1 | 312 | 14 | 339 | 3.25e-91 | 295 |
| Msa0252240 | AT1G79570.4 | 51.524 | 328 | 141 | 7 | 1 | 312 | 14 | 339 | 2.46e-90 | 294 |
| Msa0252240 | AT1G79570.5 | 51.524 | 328 | 141 | 7 | 1 | 312 | 14 | 339 | 2.46e-90 | 294 |
| Msa0252240 | AT1G79570.2 | 51.524 | 328 | 141 | 7 | 1 | 312 | 14 | 339 | 4.44e-90 | 294 |
| Msa0252240 | AT1G79570.1 | 51.524 | 328 | 141 | 7 | 1 | 312 | 14 | 339 | 4.44e-90 | 294 |
| Msa0252240 | AT1G16270.1 | 52.703 | 296 | 114 | 7 | 32 | 312 | 43 | 327 | 5.12e-76 | 254 |
| Msa0252240 | AT1G16270.2 | 52.703 | 296 | 114 | 7 | 32 | 312 | 43 | 327 | 5.12e-76 | 254 |
| Msa0252240 | AT1G16270.3 | 52.703 | 296 | 114 | 7 | 32 | 312 | 43 | 327 | 5.12e-76 | 254 |
| Msa0252240 | AT2G35050.1 | 47.508 | 301 | 127 | 10 | 2 | 281 | 16 | 306 | 1.54e-64 | 222 |
| Msa0252240 | AT2G35050.2 | 47.508 | 301 | 127 | 10 | 2 | 281 | 16 | 306 | 1.54e-64 | 222 |
| Msa0252240 | AT3G24715.1 | 34.505 | 313 | 150 | 10 | 44 | 310 | 29 | 332 | 1.15e-37 | 144 |
| Msa0252240 | AT3G24715.3 | 34.505 | 313 | 150 | 10 | 44 | 310 | 29 | 332 | 1.15e-37 | 144 |
| Msa0252240 | AT3G24715.2 | 34.505 | 313 | 150 | 10 | 44 | 310 | 29 | 332 | 1.15e-37 | 144 |
| Msa0252240 | AT3G46920.2 | 54.815 | 135 | 56 | 3 | 151 | 280 | 75 | 209 | 1.39e-37 | 144 |
| Msa0252240 | AT3G46920.1 | 54.815 | 135 | 56 | 3 | 151 | 280 | 9 | 143 | 1.65e-37 | 144 |
| Msa0252240 | AT1G04700.3 | 37.891 | 256 | 116 | 8 | 45 | 280 | 30 | 262 | 1.65e-35 | 138 |
| Msa0252240 | AT1G04700.1 | 37.891 | 256 | 116 | 8 | 45 | 280 | 30 | 262 | 1.98e-35 | 137 |
| Msa0252240 | AT1G04700.2 | 37.891 | 256 | 116 | 8 | 45 | 280 | 30 | 262 | 1.98e-35 | 137 |
| Msa0252240 | AT5G57610.1 | 51.515 | 132 | 61 | 2 | 151 | 280 | 24 | 154 | 3.28e-33 | 131 |
| Msa0252240 | AT5G49920.1 | 46.715 | 137 | 67 | 3 | 145 | 280 | 4 | 135 | 1.68e-31 | 120 |
| Msa0252240 | AT3G26510.1 | 50.000 | 112 | 48 | 3 | 143 | 249 | 4 | 112 | 4.35e-25 | 101 |
| Msa0252240 | AT3G26510.4 | 50.000 | 112 | 48 | 3 | 143 | 249 | 4 | 112 | 4.35e-25 | 101 |
| Msa0252240 | AT3G26510.3 | 50.000 | 112 | 48 | 3 | 143 | 249 | 4 | 112 | 4.35e-25 | 101 |
| Msa0252240 | AT3G26510.2 | 50.000 | 112 | 48 | 3 | 143 | 249 | 4 | 112 | 4.35e-25 | 101 |
| Msa0252240 | AT3G26510.6 | 50.000 | 112 | 48 | 3 | 143 | 249 | 4 | 112 | 4.35e-25 | 101 |
| Msa0252240 | AT3G26510.5 | 50.000 | 112 | 48 | 3 | 143 | 249 | 4 | 112 | 4.35e-25 | 101 |
| Msa0252240 | AT4G05150.1 | 39.041 | 146 | 80 | 4 | 110 | 251 | 22 | 162 | 9.46e-25 | 105 |
| Msa0252240 | AT1G70640.1 | 54.023 | 87 | 39 | 1 | 147 | 232 | 4 | 90 | 1.06e-23 | 96.7 |
| Msa0252240 | AT3G48240.1 | 50.505 | 99 | 45 | 1 | 151 | 249 | 14 | 108 | 3.65e-22 | 92.8 |
| Msa0252240 | AT2G01190.1 | 45.283 | 106 | 53 | 2 | 151 | 251 | 75 | 180 | 1.33e-21 | 97.1 |
| Msa0252240 | AT5G64430.1 | 39.130 | 138 | 73 | 3 | 148 | 278 | 42 | 175 | 1.78e-21 | 95.9 |
| Msa0252240 | AT3G18230.1 | 34.132 | 167 | 105 | 2 | 151 | 312 | 64 | 230 | 2.36e-20 | 93.2 |
| Msa0252240 | AT5G09620.2 | 40.541 | 111 | 60 | 2 | 151 | 255 | 40 | 150 | 1.09e-19 | 90.5 |
| Msa0252240 | AT5G09620.1 | 40.179 | 112 | 59 | 3 | 151 | 255 | 40 | 150 | 1.52e-19 | 90.5 |
| Msa0252240 | AT5G63130.1 | 51.948 | 77 | 37 | 0 | 146 | 222 | 10 | 86 | 7.62e-19 | 84.0 |
| Msa0252240 | AT5G63130.2 | 51.948 | 77 | 37 | 0 | 146 | 222 | 10 | 86 | 7.62e-19 | 84.0 |
| Msa0252240 | AT1G25300.1 | 33.043 | 115 | 71 | 2 | 151 | 263 | 11 | 121 | 4.95e-17 | 80.5 |
| Msa0252240 | AT5G16220.1 | 33.571 | 140 | 84 | 5 | 151 | 283 | 31 | 168 | 1.03e-16 | 81.6 |
Find 86 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGCTGGTATTCATTTCT+AGG | 0.200025 | 2_2:+43149262 | None:intergenic |
| CAGTATGTTATTGCTGTTAA+TGG | 0.224995 | 2_2:-43148455 | Msa0252240:CDS |
| ATCACACCACCGGAACTAAA+TGG | 0.240896 | 2_2:+43148209 | None:intergenic |
| TAATTATACAACTGGTTATA+TGG | 0.254070 | 2_2:-43149053 | Msa0252240:CDS |
| ATATAACCAGTTGTATAATT+AGG | 0.258175 | 2_2:+43149055 | None:intergenic |
| TTGCTTCTATCAAACTCTTT+AGG | 0.259662 | 2_2:+43148947 | None:intergenic |
| TCTTTCTGTCAGAAAATATT+AGG | 0.269496 | 2_2:-43148236 | Msa0252240:CDS |
| TCCTGATGCAGCGAAGTTCT+TGG | 0.283088 | 2_2:+43148902 | None:intergenic |
| AAGATATGTCCTTTCTTATA+CGG | 0.296886 | 2_2:+43148729 | None:intergenic |
| TGCAAATGATATAAATGAAT+TGG | 0.298515 | 2_2:-43148381 | Msa0252240:CDS |
| GTTCTCAATCAGTGATTTGC+AGG | 0.317590 | 2_2:-43148522 | Msa0252240:CDS |
| ATGAGAGACAGGGCAAATAT+TGG | 0.353843 | 2_2:-43149106 | Msa0252240:CDS |
| AGACAGTTTGTGCATGGATA+TGG | 0.356567 | 2_2:-43148875 | Msa0252240:CDS |
| TTATACGGAGAATGCGTGTT+TGG | 0.381207 | 2_2:+43148744 | None:intergenic |
| ACAATTAAGTACCAGCTTCC+CGG | 0.382280 | 2_2:-43148659 | Msa0252240:CDS |
| TGAGAGACAGGGCAAATATT+GGG | 0.389082 | 2_2:-43149105 | Msa0252240:CDS |
| ATGAAGTTTCTTTGTAGCTT+CGG | 0.397325 | 2_2:-43148818 | Msa0252240:CDS |
| TGCATTATTGACTGTGATCC+AGG | 0.400408 | 2_2:+43149244 | None:intergenic |
| CTCTTGAGTTTATGAGAGAC+AGG | 0.408175 | 2_2:-43149117 | Msa0252240:CDS |
| TCCAAGAACTTCGCTGCATC+AGG | 0.410677 | 2_2:-43148903 | Msa0252240:CDS |
| GGTGTATAAATCAGTACAAT+CGG | 0.413109 | 2_2:-43148343 | Msa0252240:CDS |
| TGATGAGTTATCATAACTTT+CGG | 0.413222 | 2_2:+43148847 | None:intergenic |
| TTAGGCAACCCATTTAGTTC+CGG | 0.419445 | 2_2:-43148218 | Msa0252240:CDS |
| AGTAATGGAGGATCTGAAAC+TGG | 0.423190 | 2_2:-43149007 | Msa0252240:CDS |
| GATTTGCAGGATGCTCAGTT+TGG | 0.423232 | 2_2:-43148509 | Msa0252240:CDS |
| TGCTGTTAATGGCATGGACT+TGG | 0.425364 | 2_2:-43148444 | Msa0252240:CDS |
| AGCGTTGATGATCTATAATC+AGG | 0.441209 | 2_2:-43148687 | Msa0252240:CDS |
| CAATTAAGTACCAGCTTCCC+GGG | 0.442674 | 2_2:-43148658 | Msa0252240:CDS |
| AGTGATCCTAATTATACAAC+TGG | 0.444251 | 2_2:-43149061 | Msa0252240:CDS |
| CGGGGAAGATCTTGATGCCT+TGG | 0.444463 | 2_2:-43148639 | Msa0252240:CDS |
| GTACAATCGGGGAGTAGAAA+TGG | 0.450505 | 2_2:-43148330 | Msa0252240:CDS |
| CATGTCTATGCCGTCAATGA+TGG | 0.456219 | 2_2:-43148978 | Msa0252240:CDS |
| TCAGTTTGGTCTCACGTCCA+TGG | 0.456435 | 2_2:-43148495 | Msa0252240:CDS |
| TACCTTAGCTTTCCATCACT+TGG | 0.469395 | 2_2:+43148776 | None:intergenic |
| TCACACCACCGGAACTAAAT+GGG | 0.472555 | 2_2:+43148210 | None:intergenic |
| CAAGATCTTCCCCGGGAAGC+TGG | 0.477699 | 2_2:+43148648 | None:intergenic |
| GATGGAAAGCTAAGGTATGT+TGG | 0.479309 | 2_2:-43148770 | Msa0252240:CDS |
| TGTATCAAATAATGCTGTAC+AGG | 0.481504 | 2_2:+43149157 | None:intergenic |
| GAGAAGGATCACAAAAGCTT+AGG | 0.485352 | 2_2:-43148553 | Msa0252240:CDS |
| GTTTAACTTCCGATGTATTG+AGG | 0.496791 | 2_2:+43149179 | None:intergenic |
| TAGAAATGGCTGTGGAATTG+AGG | 0.505903 | 2_2:-43148316 | Msa0252240:CDS |
| GTGTATAAATCAGTACAATC+GGG | 0.510389 | 2_2:-43148342 | Msa0252240:CDS |
| CATTAACAGCAATAACATAC+TGG | 0.512418 | 2_2:+43148456 | None:intergenic |
| CAGTTTGGTCTCACGTCCAT+GGG | 0.516382 | 2_2:-43148494 | Msa0252240:CDS |
| GAGTCTCAAGTCATTGAAGC+TGG | 0.518318 | 2_2:-43148294 | Msa0252240:CDS |
| CAAGGCATCAAGATCTTCCC+CGG | 0.523488 | 2_2:+43148640 | None:intergenic |
| ATTTAGTTCCGGTGGTGTGA+TGG | 0.528827 | 2_2:-43148207 | Msa0252240:CDS |
| GGATATTTATCCATCATTGA+CGG | 0.534174 | 2_2:+43148968 | None:intergenic |
| CCTAGAAATGAATACCAGCC+TGG | 0.535022 | 2_2:-43149262 | Msa0252240:CDS |
| AAATGATATAAATGAATTGG+AGG | 0.535088 | 2_2:-43148378 | Msa0252240:CDS |
| AATGATATAAATGAATTGGA+GGG | 0.553986 | 2_2:-43148377 | Msa0252240:CDS |
| CAGCATTATTTGATACAGAC+GGG | 0.556155 | 2_2:-43149151 | Msa0252240:CDS |
| CTCAACTGCCATCACACCAC+CGG | 0.556720 | 2_2:+43148199 | None:intergenic |
| ATATTGCCACGGCCAAGTGA+TGG | 0.557947 | 2_2:-43148788 | Msa0252240:CDS |
| ACAGCATTATTTGATACAGA+CGG | 0.561948 | 2_2:-43149152 | Msa0252240:CDS |
| GACAATAGACAGTTTGTGCA+TGG | 0.562402 | 2_2:-43148881 | Msa0252240:CDS |
| ACGCATTCTCCGTATAAGAA+AGG | 0.563451 | 2_2:-43148738 | Msa0252240:CDS |
| TTATTTGATACAGACGGGTG+AGG | 0.567880 | 2_2:-43149146 | Msa0252240:CDS |
| CGAGGATATACAGAACATGA+TGG | 0.569777 | 2_2:-43148600 | Msa0252240:CDS |
| GTCAATAATGCATGACCACA+TGG | 0.572642 | 2_2:-43149233 | Msa0252240:CDS |
| TCACTGACATTCGAAAATAC+AGG | 0.575002 | 2_2:+43149079 | None:intergenic |
| AGCTTTCCATCACTTGGCCG+TGG | 0.576472 | 2_2:+43148782 | None:intergenic |
| GGCAACCCATTTAGTTCCGG+TGG | 0.576497 | 2_2:-43148215 | Msa0252240:CDS |
| GACTTCAGAATCATCGCCCA+TGG | 0.577887 | 2_2:+43148478 | None:intergenic |
| TGTTATTGCTGTTAATGGCA+TGG | 0.586180 | 2_2:-43148450 | Msa0252240:CDS |
| TGATATAAATGAATTGGAGG+GGG | 0.590845 | 2_2:-43148375 | Msa0252240:CDS |
| TCGGGGAGTAGAAATGGCTG+TGG | 0.605719 | 2_2:-43148324 | Msa0252240:CDS |
| ATAATGCATGACCACATGGA+TGG | 0.606199 | 2_2:-43149229 | Msa0252240:CDS |
| ATGATATAAATGAATTGGAG+GGG | 0.607759 | 2_2:-43148376 | Msa0252240:CDS |
| TTATTGACTGTGATCCAGGC+TGG | 0.620943 | 2_2:+43149248 | None:intergenic |
| TCCGATGTATTGAGGTCATG+TGG | 0.628153 | 2_2:+43149187 | None:intergenic |
| GGAAAGCTAAGGTATGTTGG+AGG | 0.631215 | 2_2:-43148767 | Msa0252240:CDS |
| ACTGGTTATATGGAACTGAA+AGG | 0.631603 | 2_2:-43149043 | Msa0252240:CDS |
| GGCCAAGTGATGGAAAGCTA+AGG | 0.638781 | 2_2:-43148778 | Msa0252240:CDS |
| AAGTTTCTTTGTAGCTTCGG+CGG | 0.643153 | 2_2:-43148815 | Msa0252240:CDS |
| AAGGCATCAAGATCTTCCCC+GGG | 0.650794 | 2_2:+43148641 | None:intergenic |
| GTCAGATGATACAGATACCA+AGG | 0.657270 | 2_2:+43148622 | None:intergenic |
| ACCACATGACCTCAATACAT+CGG | 0.661871 | 2_2:-43149188 | Msa0252240:CDS |
| AATCATCTAGAAGATAGAGA+AGG | 0.670856 | 2_2:-43148569 | Msa0252240:CDS |
| TCTTGAGTTTATGAGAGACA+GGG | 0.674716 | 2_2:-43149116 | Msa0252240:CDS |
| TCATATAAATTCCATCCATG+TGG | 0.684508 | 2_2:+43149218 | None:intergenic |
| TGTATAAATCAGTACAATCG+GGG | 0.687901 | 2_2:-43148341 | Msa0252240:CDS |
| GAGTTTGATAGAAGCAACTG+CGG | 0.707625 | 2_2:-43148941 | Msa0252240:CDS |
| TCGGCGGTAGAATATTGCCA+CGG | 0.717552 | 2_2:-43148799 | Msa0252240:CDS |
| GGTATCTGTATCATCTGACG+AGG | 0.721389 | 2_2:-43148618 | Msa0252240:CDS |
| AATTAAGTACCAGCTTCCCG+GGG | 0.728477 | 2_2:-43148657 | Msa0252240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACCAGTTGTATAATT+AGG | + | chr2_2:43148412-43148431 | None:intergenic | 20.0% |
| !! | TAATTATACAACTGGTTATA+TGG | - | chr2_2:43148411-43148430 | Msa0252240:CDS | 20.0% |
| !! | TGCAAATGATATAAATGAAT+TGG | - | chr2_2:43149083-43149102 | Msa0252240:CDS | 20.0% |
| !! | AAATGATATAAATGAATTGG+AGG | - | chr2_2:43149086-43149105 | Msa0252240:CDS | 20.0% |
| !! | AATGATATAAATGAATTGGA+GGG | - | chr2_2:43149087-43149106 | Msa0252240:CDS | 20.0% |
| !! | ATATAACCAGTTGTATAATT+AGG | + | chr2_2:43148412-43148431 | None:intergenic | 20.0% |
| !! | TAATTATACAACTGGTTATA+TGG | - | chr2_2:43148411-43148430 | Msa0252240:CDS | 20.0% |
| !! | TGCAAATGATATAAATGAAT+TGG | - | chr2_2:43149083-43149102 | Msa0252240:CDS | 20.0% |
| !! | AAATGATATAAATGAATTGG+AGG | - | chr2_2:43149086-43149105 | Msa0252240:CDS | 20.0% |
| !! | AATGATATAAATGAATTGGA+GGG | - | chr2_2:43149087-43149106 | Msa0252240:CDS | 20.0% |
| ! | TGATGAGTTATCATAACTTT+CGG | + | chr2_2:43148620-43148639 | None:intergenic | 25.0% |
| ! | AAGATATGTCCTTTCTTATA+CGG | + | chr2_2:43148738-43148757 | None:intergenic | 25.0% |
| ! | AGAAAAAACTCAAATATGGT+TGG | - | chr2_2:43149048-43149067 | Msa0252240:CDS | 25.0% |
| ! | ATGATATAAATGAATTGGAG+GGG | - | chr2_2:43149088-43149107 | Msa0252240:CDS | 25.0% |
| ! | TCTTTCTGTCAGAAAATATT+AGG | - | chr2_2:43149228-43149247 | Msa0252240:CDS | 25.0% |
| ! | TGATGAGTTATCATAACTTT+CGG | + | chr2_2:43148620-43148639 | None:intergenic | 25.0% |
| ! | AAGATATGTCCTTTCTTATA+CGG | + | chr2_2:43148738-43148757 | None:intergenic | 25.0% |
| ! | AGAAAAAACTCAAATATGGT+TGG | - | chr2_2:43149048-43149067 | Msa0252240:CDS | 25.0% |
| ! | ATGATATAAATGAATTGGAG+GGG | - | chr2_2:43149088-43149107 | Msa0252240:CDS | 25.0% |
| ! | TCTTTCTGTCAGAAAATATT+AGG | - | chr2_2:43149228-43149247 | Msa0252240:CDS | 25.0% |
| TCATATAAATTCCATCCATG+TGG | + | chr2_2:43148249-43148268 | None:intergenic | 30.0% | |
| TGTATCAAATAATGCTGTAC+AGG | + | chr2_2:43148310-43148329 | None:intergenic | 30.0% | |
| ACAGCATTATTTGATACAGA+CGG | - | chr2_2:43148312-43148331 | Msa0252240:CDS | 30.0% | |
| AGTGATCCTAATTATACAAC+TGG | - | chr2_2:43148403-43148422 | Msa0252240:CDS | 30.0% | |
| !! | ATTTTAGGAATCAGTAATGG+AGG | - | chr2_2:43148445-43148464 | Msa0252240:CDS | 30.0% |
| GGATATTTATCCATCATTGA+CGG | + | chr2_2:43148499-43148518 | None:intergenic | 30.0% | |
| TTGCTTCTATCAAACTCTTT+AGG | + | chr2_2:43148520-43148539 | None:intergenic | 30.0% | |
| ATGAAGTTTCTTTGTAGCTT+CGG | - | chr2_2:43148646-43148665 | Msa0252240:CDS | 30.0% | |
| AATCATCTAGAAGATAGAGA+AGG | - | chr2_2:43148895-43148914 | Msa0252240:CDS | 30.0% | |
| CATTAACAGCAATAACATAC+TGG | + | chr2_2:43149011-43149030 | None:intergenic | 30.0% | |
| ! | CAGTATGTTATTGCTGTTAA+TGG | - | chr2_2:43149009-43149028 | Msa0252240:CDS | 30.0% |
| GTCGAGAAAAAACTCAAATA+TGG | - | chr2_2:43149044-43149063 | Msa0252240:CDS | 30.0% | |
| TGATATAAATGAATTGGAGG+GGG | - | chr2_2:43149089-43149108 | Msa0252240:CDS | 30.0% | |
| GGTGTATAAATCAGTACAAT+CGG | - | chr2_2:43149121-43149140 | Msa0252240:CDS | 30.0% | |
| GTGTATAAATCAGTACAATC+GGG | - | chr2_2:43149122-43149141 | Msa0252240:CDS | 30.0% | |
| TGTATAAATCAGTACAATCG+GGG | - | chr2_2:43149123-43149142 | Msa0252240:CDS | 30.0% | |
| TCATATAAATTCCATCCATG+TGG | + | chr2_2:43148249-43148268 | None:intergenic | 30.0% | |
| TGTATCAAATAATGCTGTAC+AGG | + | chr2_2:43148310-43148329 | None:intergenic | 30.0% | |
| ACAGCATTATTTGATACAGA+CGG | - | chr2_2:43148312-43148331 | Msa0252240:CDS | 30.0% | |
| AGTGATCCTAATTATACAAC+TGG | - | chr2_2:43148403-43148422 | Msa0252240:CDS | 30.0% | |
| !! | ATTTTAGGAATCAGTAATGG+AGG | - | chr2_2:43148445-43148464 | Msa0252240:CDS | 30.0% |
| GGATATTTATCCATCATTGA+CGG | + | chr2_2:43148499-43148518 | None:intergenic | 30.0% | |
| TTGCTTCTATCAAACTCTTT+AGG | + | chr2_2:43148520-43148539 | None:intergenic | 30.0% | |
| ATGAAGTTTCTTTGTAGCTT+CGG | - | chr2_2:43148646-43148665 | Msa0252240:CDS | 30.0% | |
| AATCATCTAGAAGATAGAGA+AGG | - | chr2_2:43148895-43148914 | Msa0252240:CDS | 30.0% | |
| CATTAACAGCAATAACATAC+TGG | + | chr2_2:43149011-43149030 | None:intergenic | 30.0% | |
| ! | CAGTATGTTATTGCTGTTAA+TGG | - | chr2_2:43149009-43149028 | Msa0252240:CDS | 30.0% |
| GTCGAGAAAAAACTCAAATA+TGG | - | chr2_2:43149044-43149063 | Msa0252240:CDS | 30.0% | |
| TGATATAAATGAATTGGAGG+GGG | - | chr2_2:43149089-43149108 | Msa0252240:CDS | 30.0% | |
| GGTGTATAAATCAGTACAAT+CGG | - | chr2_2:43149121-43149140 | Msa0252240:CDS | 30.0% | |
| GTGTATAAATCAGTACAATC+GGG | - | chr2_2:43149122-43149141 | Msa0252240:CDS | 30.0% | |
| TGTATAAATCAGTACAATCG+GGG | - | chr2_2:43149123-43149142 | Msa0252240:CDS | 30.0% | |
| ! | GTTTAACTTCCGATGTATTG+AGG | + | chr2_2:43148288-43148307 | None:intergenic | 35.0% |
| CAGCATTATTTGATACAGAC+GGG | - | chr2_2:43148313-43148332 | Msa0252240:CDS | 35.0% | |
| TCTTGAGTTTATGAGAGACA+GGG | - | chr2_2:43148348-43148367 | Msa0252240:CDS | 35.0% | |
| TCACTGACATTCGAAAATAC+AGG | + | chr2_2:43148388-43148407 | None:intergenic | 35.0% | |
| ACTGGTTATATGGAACTGAA+AGG | - | chr2_2:43148421-43148440 | Msa0252240:CDS | 35.0% | |
| !!! | ATGGAACTGAAAGGCATTTT+AGG | - | chr2_2:43148430-43148449 | Msa0252240:CDS | 35.0% |
| !! | GGCATTTTAGGAATCAGTAA+TGG | - | chr2_2:43148442-43148461 | Msa0252240:CDS | 35.0% |
| !! | AGCGTTGATGATCTATAATC+AGG | - | chr2_2:43148777-43148796 | Msa0252240:CDS | 35.0% |
| ! | TGTTATTGCTGTTAATGGCA+TGG | - | chr2_2:43149014-43149033 | Msa0252240:CDS | 35.0% |
| ! | GTTTAACTTCCGATGTATTG+AGG | + | chr2_2:43148288-43148307 | None:intergenic | 35.0% |
| CAGCATTATTTGATACAGAC+GGG | - | chr2_2:43148313-43148332 | Msa0252240:CDS | 35.0% | |
| TCTTGAGTTTATGAGAGACA+GGG | - | chr2_2:43148348-43148367 | Msa0252240:CDS | 35.0% | |
| TCACTGACATTCGAAAATAC+AGG | + | chr2_2:43148388-43148407 | None:intergenic | 35.0% | |
| ACTGGTTATATGGAACTGAA+AGG | - | chr2_2:43148421-43148440 | Msa0252240:CDS | 35.0% | |
| !!! | ATGGAACTGAAAGGCATTTT+AGG | - | chr2_2:43148430-43148449 | Msa0252240:CDS | 35.0% |
| !! | GGCATTTTAGGAATCAGTAA+TGG | - | chr2_2:43148442-43148461 | Msa0252240:CDS | 35.0% |
| !! | AGCGTTGATGATCTATAATC+AGG | - | chr2_2:43148777-43148796 | Msa0252240:CDS | 35.0% |
| ! | TGTTATTGCTGTTAATGGCA+TGG | - | chr2_2:43149014-43149033 | Msa0252240:CDS | 35.0% |
| ! | TGCATTATTGACTGTGATCC+AGG | + | chr2_2:43148223-43148242 | None:intergenic | 40.0% |
| GTCAATAATGCATGACCACA+TGG | - | chr2_2:43148231-43148250 | Msa0252240:CDS | 40.0% | |
| ATAATGCATGACCACATGGA+TGG | - | chr2_2:43148235-43148254 | Msa0252240:CDS | 40.0% | |
| ACCACATGACCTCAATACAT+CGG | - | chr2_2:43148276-43148295 | Msa0252240:CDS | 40.0% | |
| TTATTTGATACAGACGGGTG+AGG | - | chr2_2:43148318-43148337 | Msa0252240:CDS | 40.0% | |
| CTCTTGAGTTTATGAGAGAC+AGG | - | chr2_2:43148347-43148366 | Msa0252240:CDS | 40.0% | |
| ATGAGAGACAGGGCAAATAT+TGG | - | chr2_2:43148358-43148377 | Msa0252240:CDS | 40.0% | |
| TGAGAGACAGGGCAAATATT+GGG | - | chr2_2:43148359-43148378 | Msa0252240:CDS | 40.0% | |
| ! | AGTAATGGAGGATCTGAAAC+TGG | - | chr2_2:43148457-43148476 | Msa0252240:CDS | 40.0% |
| GAGTTTGATAGAAGCAACTG+CGG | - | chr2_2:43148523-43148542 | Msa0252240:CDS | 40.0% | |
| GACAATAGACAGTTTGTGCA+TGG | - | chr2_2:43148583-43148602 | Msa0252240:CDS | 40.0% | |
| AGACAGTTTGTGCATGGATA+TGG | - | chr2_2:43148589-43148608 | Msa0252240:CDS | 40.0% | |
| AAGTTTCTTTGTAGCTTCGG+CGG | - | chr2_2:43148649-43148668 | Msa0252240:CDS | 40.0% | |
| ! | TACCTTAGCTTTCCATCACT+TGG | + | chr2_2:43148691-43148710 | None:intergenic | 40.0% |
| GATGGAAAGCTAAGGTATGT+TGG | - | chr2_2:43148694-43148713 | Msa0252240:CDS | 40.0% | |
| TTATACGGAGAATGCGTGTT+TGG | + | chr2_2:43148723-43148742 | None:intergenic | 40.0% | |
| ACGCATTCTCCGTATAAGAA+AGG | - | chr2_2:43148726-43148745 | Msa0252240:CDS | 40.0% | |
| ACAATTAAGTACCAGCTTCC+CGG | - | chr2_2:43148805-43148824 | Msa0252240:CDS | 40.0% | |
| GTCAGATGATACAGATACCA+AGG | + | chr2_2:43148845-43148864 | None:intergenic | 40.0% | |
| CGAGGATATACAGAACATGA+TGG | - | chr2_2:43148864-43148883 | Msa0252240:CDS | 40.0% | |
| GAGAAGGATCACAAAAGCTT+AGG | - | chr2_2:43148911-43148930 | Msa0252240:CDS | 40.0% | |
| ! | GTTCTCAATCAGTGATTTGC+AGG | - | chr2_2:43148942-43148961 | Msa0252240:CDS | 40.0% |
| TAGAAATGGCTGTGGAATTG+AGG | - | chr2_2:43149148-43149167 | Msa0252240:CDS | 40.0% | |
| ! | TTAGGCAACCCATTTAGTTC+CGG | - | chr2_2:43149246-43149265 | Msa0252240:CDS | 40.0% |
| ! | TGCATTATTGACTGTGATCC+AGG | + | chr2_2:43148223-43148242 | None:intergenic | 40.0% |
| GTCAATAATGCATGACCACA+TGG | - | chr2_2:43148231-43148250 | Msa0252240:CDS | 40.0% | |
| ATAATGCATGACCACATGGA+TGG | - | chr2_2:43148235-43148254 | Msa0252240:CDS | 40.0% | |
| ACCACATGACCTCAATACAT+CGG | - | chr2_2:43148276-43148295 | Msa0252240:CDS | 40.0% | |
| TTATTTGATACAGACGGGTG+AGG | - | chr2_2:43148318-43148337 | Msa0252240:CDS | 40.0% | |
| CTCTTGAGTTTATGAGAGAC+AGG | - | chr2_2:43148347-43148366 | Msa0252240:CDS | 40.0% | |
| ATGAGAGACAGGGCAAATAT+TGG | - | chr2_2:43148358-43148377 | Msa0252240:CDS | 40.0% | |
| TGAGAGACAGGGCAAATATT+GGG | - | chr2_2:43148359-43148378 | Msa0252240:CDS | 40.0% | |
| ! | AGTAATGGAGGATCTGAAAC+TGG | - | chr2_2:43148457-43148476 | Msa0252240:CDS | 40.0% |
| GAGTTTGATAGAAGCAACTG+CGG | - | chr2_2:43148523-43148542 | Msa0252240:CDS | 40.0% | |
| GACAATAGACAGTTTGTGCA+TGG | - | chr2_2:43148583-43148602 | Msa0252240:CDS | 40.0% | |
| AGACAGTTTGTGCATGGATA+TGG | - | chr2_2:43148589-43148608 | Msa0252240:CDS | 40.0% | |
| AAGTTTCTTTGTAGCTTCGG+CGG | - | chr2_2:43148649-43148668 | Msa0252240:CDS | 40.0% | |
| ! | TACCTTAGCTTTCCATCACT+TGG | + | chr2_2:43148691-43148710 | None:intergenic | 40.0% |
| GATGGAAAGCTAAGGTATGT+TGG | - | chr2_2:43148694-43148713 | Msa0252240:CDS | 40.0% | |
| TTATACGGAGAATGCGTGTT+TGG | + | chr2_2:43148723-43148742 | None:intergenic | 40.0% | |
| ACGCATTCTCCGTATAAGAA+AGG | - | chr2_2:43148726-43148745 | Msa0252240:CDS | 40.0% | |
| ACAATTAAGTACCAGCTTCC+CGG | - | chr2_2:43148805-43148824 | Msa0252240:CDS | 40.0% | |
| GTCAGATGATACAGATACCA+AGG | + | chr2_2:43148845-43148864 | None:intergenic | 40.0% | |
| CGAGGATATACAGAACATGA+TGG | - | chr2_2:43148864-43148883 | Msa0252240:CDS | 40.0% | |
| GAGAAGGATCACAAAAGCTT+AGG | - | chr2_2:43148911-43148930 | Msa0252240:CDS | 40.0% | |
| ! | GTTCTCAATCAGTGATTTGC+AGG | - | chr2_2:43148942-43148961 | Msa0252240:CDS | 40.0% |
| TAGAAATGGCTGTGGAATTG+AGG | - | chr2_2:43149148-43149167 | Msa0252240:CDS | 40.0% | |
| ! | TTAGGCAACCCATTTAGTTC+CGG | - | chr2_2:43149246-43149265 | Msa0252240:CDS | 40.0% |
| CCAGGCTGGTATTCATTTCT+AGG | + | chr2_2:43148205-43148224 | None:intergenic | 45.0% | |
| CCTAGAAATGAATACCAGCC+TGG | - | chr2_2:43148202-43148221 | Msa0252240:CDS | 45.0% | |
| ! | TTATTGACTGTGATCCAGGC+TGG | + | chr2_2:43148219-43148238 | None:intergenic | 45.0% |
| TCCGATGTATTGAGGTCATG+TGG | + | chr2_2:43148280-43148299 | None:intergenic | 45.0% | |
| CATGTCTATGCCGTCAATGA+TGG | - | chr2_2:43148486-43148505 | Msa0252240:CDS | 45.0% | |
| GGAAAGCTAAGGTATGTTGG+AGG | - | chr2_2:43148697-43148716 | Msa0252240:CDS | 45.0% | |
| CAATTAAGTACCAGCTTCCC+GGG | - | chr2_2:43148806-43148825 | Msa0252240:CDS | 45.0% | |
| AATTAAGTACCAGCTTCCCG+GGG | - | chr2_2:43148807-43148826 | Msa0252240:CDS | 45.0% | |
| GGTATCTGTATCATCTGACG+AGG | - | chr2_2:43148846-43148865 | Msa0252240:CDS | 45.0% | |
| GATTTGCAGGATGCTCAGTT+TGG | - | chr2_2:43148955-43148974 | Msa0252240:CDS | 45.0% | |
| TGCTGTTAATGGCATGGACT+TGG | - | chr2_2:43149020-43149039 | Msa0252240:CDS | 45.0% | |
| AATTGGAGGGGGATCATTCT+TGG | - | chr2_2:43149100-43149119 | Msa0252240:CDS | 45.0% | |
| GTACAATCGGGGAGTAGAAA+TGG | - | chr2_2:43149134-43149153 | Msa0252240:CDS | 45.0% | |
| GAGTCTCAAGTCATTGAAGC+TGG | - | chr2_2:43149170-43149189 | Msa0252240:CDS | 45.0% | |
| TCACACCACCGGAACTAAAT+GGG | + | chr2_2:43149257-43149276 | None:intergenic | 45.0% | |
| ATCACACCACCGGAACTAAA+TGG | + | chr2_2:43149258-43149277 | None:intergenic | 45.0% | |
| ! | ATTTAGTTCCGGTGGTGTGA+TGG | - | chr2_2:43149257-43149276 | Msa0252240:CDS | 45.0% |
| CCAGGCTGGTATTCATTTCT+AGG | + | chr2_2:43148205-43148224 | None:intergenic | 45.0% | |
| CCTAGAAATGAATACCAGCC+TGG | - | chr2_2:43148202-43148221 | Msa0252240:CDS | 45.0% | |
| ! | TTATTGACTGTGATCCAGGC+TGG | + | chr2_2:43148219-43148238 | None:intergenic | 45.0% |
| TCCGATGTATTGAGGTCATG+TGG | + | chr2_2:43148280-43148299 | None:intergenic | 45.0% | |
| CATGTCTATGCCGTCAATGA+TGG | - | chr2_2:43148486-43148505 | Msa0252240:CDS | 45.0% | |
| GGAAAGCTAAGGTATGTTGG+AGG | - | chr2_2:43148697-43148716 | Msa0252240:CDS | 45.0% | |
| CAATTAAGTACCAGCTTCCC+GGG | - | chr2_2:43148806-43148825 | Msa0252240:CDS | 45.0% | |
| AATTAAGTACCAGCTTCCCG+GGG | - | chr2_2:43148807-43148826 | Msa0252240:CDS | 45.0% | |
| GGTATCTGTATCATCTGACG+AGG | - | chr2_2:43148846-43148865 | Msa0252240:CDS | 45.0% | |
| GATTTGCAGGATGCTCAGTT+TGG | - | chr2_2:43148955-43148974 | Msa0252240:CDS | 45.0% | |
| TGCTGTTAATGGCATGGACT+TGG | - | chr2_2:43149020-43149039 | Msa0252240:CDS | 45.0% | |
| AATTGGAGGGGGATCATTCT+TGG | - | chr2_2:43149100-43149119 | Msa0252240:CDS | 45.0% | |
| GTACAATCGGGGAGTAGAAA+TGG | - | chr2_2:43149134-43149153 | Msa0252240:CDS | 45.0% | |
| GAGTCTCAAGTCATTGAAGC+TGG | - | chr2_2:43149170-43149189 | Msa0252240:CDS | 45.0% | |
| TCACACCACCGGAACTAAAT+GGG | + | chr2_2:43149257-43149276 | None:intergenic | 45.0% | |
| ATCACACCACCGGAACTAAA+TGG | + | chr2_2:43149258-43149277 | None:intergenic | 45.0% | |
| ! | ATTTAGTTCCGGTGGTGTGA+TGG | - | chr2_2:43149257-43149276 | Msa0252240:CDS | 45.0% |
| TCCAAGAACTTCGCTGCATC+AGG | - | chr2_2:43148561-43148580 | Msa0252240:CDS | 50.0% | |
| TCCTGATGCAGCGAAGTTCT+TGG | + | chr2_2:43148565-43148584 | None:intergenic | 50.0% | |
| TCGGCGGTAGAATATTGCCA+CGG | - | chr2_2:43148665-43148684 | Msa0252240:CDS | 50.0% | |
| ATATTGCCACGGCCAAGTGA+TGG | - | chr2_2:43148676-43148695 | Msa0252240:CDS | 50.0% | |
| ! | GGCCAAGTGATGGAAAGCTA+AGG | - | chr2_2:43148686-43148705 | Msa0252240:CDS | 50.0% |
| ! | AAGGCATCAAGATCTTCCCC+GGG | + | chr2_2:43148826-43148845 | None:intergenic | 50.0% |
| ! | CAAGGCATCAAGATCTTCCC+CGG | + | chr2_2:43148827-43148846 | None:intergenic | 50.0% |
| TCAGTTTGGTCTCACGTCCA+TGG | - | chr2_2:43148969-43148988 | Msa0252240:CDS | 50.0% | |
| CAGTTTGGTCTCACGTCCAT+GGG | - | chr2_2:43148970-43148989 | Msa0252240:CDS | 50.0% | |
| GACTTCAGAATCATCGCCCA+TGG | + | chr2_2:43148989-43149008 | None:intergenic | 50.0% | |
| TCCAAGAACTTCGCTGCATC+AGG | - | chr2_2:43148561-43148580 | Msa0252240:CDS | 50.0% | |
| TCCTGATGCAGCGAAGTTCT+TGG | + | chr2_2:43148565-43148584 | None:intergenic | 50.0% | |
| TCGGCGGTAGAATATTGCCA+CGG | - | chr2_2:43148665-43148684 | Msa0252240:CDS | 50.0% | |
| ATATTGCCACGGCCAAGTGA+TGG | - | chr2_2:43148676-43148695 | Msa0252240:CDS | 50.0% | |
| ! | GGCCAAGTGATGGAAAGCTA+AGG | - | chr2_2:43148686-43148705 | Msa0252240:CDS | 50.0% |
| ! | AAGGCATCAAGATCTTCCCC+GGG | + | chr2_2:43148826-43148845 | None:intergenic | 50.0% |
| ! | CAAGGCATCAAGATCTTCCC+CGG | + | chr2_2:43148827-43148846 | None:intergenic | 50.0% |
| TCAGTTTGGTCTCACGTCCA+TGG | - | chr2_2:43148969-43148988 | Msa0252240:CDS | 50.0% | |
| CAGTTTGGTCTCACGTCCAT+GGG | - | chr2_2:43148970-43148989 | Msa0252240:CDS | 50.0% | |
| GACTTCAGAATCATCGCCCA+TGG | + | chr2_2:43148989-43149008 | None:intergenic | 50.0% | |
| AGCTTTCCATCACTTGGCCG+TGG | + | chr2_2:43148685-43148704 | None:intergenic | 55.0% | |
| CGGGGAAGATCTTGATGCCT+TGG | - | chr2_2:43148825-43148844 | Msa0252240:CDS | 55.0% | |
| TCGGGGAGTAGAAATGGCTG+TGG | - | chr2_2:43149140-43149159 | Msa0252240:CDS | 55.0% | |
| ! | GGCAACCCATTTAGTTCCGG+TGG | - | chr2_2:43149249-43149268 | Msa0252240:CDS | 55.0% |
| CTCAACTGCCATCACACCAC+CGG | + | chr2_2:43149268-43149287 | None:intergenic | 55.0% | |
| AGCTTTCCATCACTTGGCCG+TGG | + | chr2_2:43148685-43148704 | None:intergenic | 55.0% | |
| CGGGGAAGATCTTGATGCCT+TGG | - | chr2_2:43148825-43148844 | Msa0252240:CDS | 55.0% | |
| TCGGGGAGTAGAAATGGCTG+TGG | - | chr2_2:43149140-43149159 | Msa0252240:CDS | 55.0% | |
| ! | GGCAACCCATTTAGTTCCGG+TGG | - | chr2_2:43149249-43149268 | Msa0252240:CDS | 55.0% |
| CTCAACTGCCATCACACCAC+CGG | + | chr2_2:43149268-43149287 | None:intergenic | 55.0% | |
| CAAGATCTTCCCCGGGAAGC+TGG | + | chr2_2:43148819-43148838 | None:intergenic | 60.0% | |
| CAAGATCTTCCCCGGGAAGC+TGG | + | chr2_2:43148819-43148838 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 43148196 | 43149290 | 43148196 | ID=Msa0252240;Name=Msa0252240 |
| chr2_2 | mRNA | 43148196 | 43149290 | 43148196 | ID=Msa0252240-mRNA-1;Parent=Msa0252240;Name=Msa0252240-mRNA-1;_AED=0.43;_eAED=0.52;_QI=0|-1|0|1|-1|1|1|0|364 |
| chr2_2 | exon | 43148196 | 43149290 | 43148196 | ID=Msa0252240-mRNA-1:exon:13397;Parent=Msa0252240-mRNA-1 |
| chr2_2 | CDS | 43148196 | 43149290 | 43148196 | ID=Msa0252240-mRNA-1:cds;Parent=Msa0252240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
