Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0211650 | -0.815892 | 7.323895e-52 | -8.615850e-47 |
| Msa0006880 | Msa0211650 | 0.850205 | 1.974450e-60 | -8.615850e-47 |
| Msa0007850 | Msa0211650 | 0.812476 | 4.160051e-51 | -8.615850e-47 |
| Msa0026660 | Msa0211650 | 0.818917 | 1.526157e-52 | -8.615850e-47 |
| Msa0027580 | Msa0211650 | 0.818409 | 1.990279e-52 | -8.615850e-47 |
| Msa0036370 | Msa0211650 | 0.812236 | 4.691714e-51 | -8.615850e-47 |
| Msa0055100 | Msa0211650 | 0.816944 | 4.259078e-52 | -8.615850e-47 |
| Msa0055150 | Msa0211650 | 0.837177 | 6.062421e-57 | -8.615850e-47 |
| Msa0057140 | Msa0211650 | 0.803754 | 2.997399e-49 | -8.615850e-47 |
| Msa0061970 | Msa0211650 | 0.800309 | 1.531363e-48 | -8.615850e-47 |
| Msa0072170 | Msa0211650 | 0.821328 | 4.281177e-53 | -8.615850e-47 |
| Msa0075340 | Msa0211650 | 0.817330 | 3.488213e-52 | -8.615850e-47 |
| Msa0090030 | Msa0211650 | 0.837625 | 4.653240e-57 | -8.615850e-47 |
| Msa0094010 | Msa0211650 | 0.800456 | 1.429236e-48 | -8.615850e-47 |
| Msa0097950 | Msa0211650 | 0.801990 | 6.935361e-49 | -8.615850e-47 |
| Msa0099510 | Msa0211650 | 0.810095 | 1.366645e-50 | -8.615850e-47 |
| Msa0100800 | Msa0211650 | 0.829132 | 6.107755e-55 | -8.615850e-47 |
| Msa0101180 | Msa0211650 | 0.805275 | 1.444192e-49 | -8.615850e-47 |
| Msa0104610 | Msa0211650 | 0.809160 | 2.170475e-50 | -8.615850e-47 |
| Msa0108870 | Msa0211650 | 0.825936 | 3.572257e-54 | -8.615850e-47 |
| Msa0115460 | Msa0211650 | 0.802735 | 4.872950e-49 | -8.615850e-47 |
| Msa0120540 | Msa0211650 | 0.829412 | 5.222329e-55 | -8.615850e-47 |
| Msa0121820 | Msa0211650 | 0.807216 | 5.634216e-50 | -8.615850e-47 |
| Msa0126880 | Msa0211650 | 0.804545 | 2.052338e-49 | -8.615850e-47 |
| Msa0131450 | Msa0211650 | 0.844765 | 6.174011e-59 | -8.615850e-47 |
| Msa0137040 | Msa0211650 | 0.810882 | 9.241115e-51 | -8.615850e-47 |
| Msa0140400 | Msa0211650 | 0.817140 | 3.848185e-52 | -8.615850e-47 |
| Msa0145150 | Msa0211650 | 0.814442 | 1.537728e-51 | -8.615850e-47 |
| Msa0155430 | Msa0211650 | 0.803313 | 3.700869e-49 | -8.615850e-47 |
| Msa0166750 | Msa0211650 | 0.834420 | 3.027912e-56 | -8.615850e-47 |
| Msa0177270 | Msa0211650 | 0.832874 | 7.367322e-56 | -8.615850e-47 |
| Msa0182280 | Msa0211650 | 0.811580 | 6.521671e-51 | -8.615850e-47 |
| Msa0186770 | Msa0211650 | 0.813993 | 1.931686e-51 | -8.615850e-47 |
| Msa0198520 | Msa0211650 | 0.803321 | 3.686583e-49 | -8.615850e-47 |
| Msa0198530 | Msa0211650 | 0.806810 | 6.866522e-50 | -8.615850e-47 |
| Msa0206990 | Msa0211650 | 0.810615 | 1.055696e-50 | -8.615850e-47 |
| Msa0208810 | Msa0211650 | 0.828272 | 9.861054e-55 | -8.615850e-47 |
| Msa0211650 | Msa0227400 | 0.800899 | 1.160835e-48 | -8.615850e-47 |
| Msa0211650 | Msa0239940 | 0.801216 | 9.995241e-49 | -8.615850e-47 |
| Msa0211650 | Msa0252240 | 0.874037 | 9.231393e-68 | -8.615850e-47 |
| Msa0211650 | Msa0266210 | 0.813701 | 2.240507e-51 | -8.615850e-47 |
| Msa0211650 | Msa0280430 | 0.818140 | 2.289102e-52 | -8.615850e-47 |
| Msa0211650 | Msa0287670 | 0.814026 | 1.899432e-51 | -8.615850e-47 |
| Msa0211650 | Msa0288730 | 0.813637 | 2.313913e-51 | -8.615850e-47 |
| Msa0211650 | Msa0291520 | 0.846660 | 1.888670e-59 | -8.615850e-47 |
| Msa0211650 | Msa0299520 | 0.813038 | 3.132638e-51 | -8.615850e-47 |
| Msa0211650 | Msa0304330 | 0.803580 | 3.256996e-49 | -8.615850e-47 |
| Msa0211650 | Msa0305890 | 0.804765 | 1.846309e-49 | -8.615850e-47 |
| Msa0211650 | Msa0308220 | 0.826388 | 2.788336e-54 | -8.615850e-47 |
| Msa0211650 | Msa0310410 | 0.800028 | 1.746283e-48 | -8.615850e-47 |
| Msa0211650 | Msa0340810 | 0.804469 | 2.128098e-49 | -8.615850e-47 |
| Msa0211650 | Msa0381700 | 0.804234 | 2.381748e-49 | -8.615850e-47 |
| Msa0211650 | Msa0384880 | 0.801454 | 8.934696e-49 | -8.615850e-47 |
| Msa0211650 | Msa0394400 | 0.821103 | 4.823897e-53 | -8.615850e-47 |
| Msa0211650 | Msa0413730 | 0.806091 | 9.734350e-50 | -8.615850e-47 |
| Msa0211650 | Msa0419520 | 0.818310 | 2.095013e-52 | -8.615850e-47 |
| Msa0211650 | Msa0426810 | 0.800207 | 1.605962e-48 | -8.615850e-47 |
| Msa0211650 | Msa0439890 | 0.813692 | 2.250805e-51 | -8.615850e-47 |
| Msa0211650 | Msa0460930 | 0.804891 | 1.737344e-49 | -8.615850e-47 |
| Msa0211650 | Msa0465550 | 0.807285 | 5.445618e-50 | -8.615850e-47 |
| Msa0211650 | Msa0474700 | 0.811310 | 7.465285e-51 | -8.615850e-47 |
| Msa0211650 | Msa0479330 | 0.821772 | 3.379235e-53 | -8.615850e-47 |
| Msa0211650 | Msa0505380 | 0.807229 | 5.597258e-50 | -8.615850e-47 |
| Msa0211650 | Msa0506940 | 0.819303 | 1.246556e-52 | -8.615850e-47 |
| Msa0211650 | Msa0513440 | 0.817717 | 2.853638e-52 | -8.615850e-47 |
| Msa0211650 | Msa0527910 | 0.802557 | 5.302025e-49 | -8.615850e-47 |
| Msa0211650 | Msa0534080 | 0.806216 | 9.160781e-50 | -8.615850e-47 |
| Msa0211650 | Msa0550570 | 0.823581 | 1.282100e-53 | -8.615850e-47 |
| Msa0211650 | Msa0556790 | 0.827667 | 1.378540e-54 | -8.615850e-47 |
| Msa0211650 | Msa0590650 | 0.806340 | 8.628285e-50 | -8.615850e-47 |
| Msa0211650 | Msa0607510 | 0.801473 | 8.857473e-49 | -8.615850e-47 |
| Msa0211650 | Msa0626940 | 0.828771 | 7.467714e-55 | -8.615850e-47 |
| Msa0211650 | Msa0639120 | 0.803592 | 3.238300e-49 | -8.615850e-47 |
| Msa0211650 | Msa0652300 | 0.827148 | 1.835918e-54 | -8.615850e-47 |
| Msa0211650 | Msa0656580 | 0.804495 | 2.102040e-49 | -8.615850e-47 |
| Msa0211650 | Msa0693790 | 0.802177 | 6.349126e-49 | -8.615850e-47 |
| Msa0211650 | Msa0694840 | 0.825334 | 4.960469e-54 | -8.615850e-47 |
| Msa0211650 | Msa0707390 | 0.810534 | 1.098776e-50 | -8.615850e-47 |
| Msa0211650 | Msa0711490 | 0.820298 | 7.385040e-53 | -8.615850e-47 |
| Msa0211650 | Msa0735310 | 0.803041 | 4.212816e-49 | -8.615850e-47 |
| Msa0211650 | Msa0814250 | 0.805866 | 1.085426e-49 | -8.615850e-47 |
| Msa0211650 | Msa0824730 | 0.802348 | 5.855776e-49 | -8.615850e-47 |
| Msa0211650 | Msa0898890 | 0.804497 | 2.099769e-49 | -8.615850e-47 |
| Msa0211650 | Msa0899290 | 0.818834 | 1.593564e-52 | -8.615850e-47 |
| Msa0211650 | Msa0901450 | 0.802655 | 5.061818e-49 | -8.615850e-47 |
| Msa0211650 | Msa0940830 | 0.802480 | 5.498848e-49 | -8.615850e-47 |
| Msa0211650 | Msa0945100 | 0.814982 | 1.167057e-51 | -8.615850e-47 |
| Msa0211650 | Msa0976330 | 0.800680 | 1.286747e-48 | -8.615850e-47 |
| Msa0211650 | Msa0981430 | 0.809556 | 1.784963e-50 | -8.615850e-47 |
| Msa0211650 | Msa1003440 | 0.811897 | 5.564488e-51 | -8.615850e-47 |
| Msa0211650 | Msa1025940 | 0.809045 | 2.297308e-50 | -8.615850e-47 |
| Msa0211650 | Msa1070050 | 0.806910 | 6.540339e-50 | -8.615850e-47 |
| Msa0211650 | Msa1073400 | 0.827754 | 1.313366e-54 | -8.615850e-47 |
| Msa0211650 | Msa1089840 | 0.804751 | 1.858174e-49 | -8.615850e-47 |
| Msa0211650 | Msa1093330 | 0.844247 | 8.507099e-59 | -8.615850e-47 |
| Msa0211650 | Msa1108800 | 0.808537 | 2.949539e-50 | -8.615850e-47 |
| Msa0211650 | Msa1125550 | 0.806641 | 7.452335e-50 | -8.615850e-47 |
| Msa0211650 | Msa1160360 | 0.825117 | 5.584389e-54 | -8.615850e-47 |
| Msa0211650 | Msa1178050 | 0.802417 | 5.665296e-49 | -8.615850e-47 |
| Msa0211650 | Msa1179950 | 0.826229 | 3.042792e-54 | -8.615850e-47 |
| Msa0211650 | Msa1179980 | 0.832885 | 7.322227e-56 | -8.615850e-47 |
| Msa0211650 | Msa1198880 | 0.802224 | 6.210579e-49 | -8.615850e-47 |
| Msa0211650 | Msa1201830 | 0.813781 | 2.151460e-51 | -8.615850e-47 |
| Msa0211650 | Msa1205850 | 0.828299 | 9.712814e-55 | -8.615850e-47 |
| Msa0211650 | Msa1207730 | 0.827702 | 1.351996e-54 | -8.615850e-47 |
| Msa0211650 | Msa1226610 | 0.816669 | 4.908467e-52 | -8.615850e-47 |
| Msa0211650 | Msa1270620 | 0.832832 | 7.548672e-56 | -8.615850e-47 |
| Msa0211650 | Msa1270690 | 0.826687 | 2.366444e-54 | -8.615850e-47 |
| Msa0211650 | Msa1280620 | 0.818881 | 1.555504e-52 | -8.615850e-47 |
| Msa0211650 | Msa1294840 | 0.812121 | 4.971782e-51 | -8.615850e-47 |
| Msa0211650 | Msa1294960 | 0.817508 | 3.180322e-52 | -8.615850e-47 |
| Msa0211650 | Msa1299700 | 0.815294 | 9.953391e-52 | -8.615850e-47 |
| Msa0211650 | Msa1306990 | 0.824858 | 6.425942e-54 | -8.615850e-47 |
| Msa0211650 | Msa1330890 | -0.813645 | 2.304263e-51 | -8.615850e-47 |
| Msa0211650 | Msa1332220 | 0.800739 | 1.251293e-48 | -8.615850e-47 |
| Msa0211650 | Msa1340830 | 0.810559 | 1.085335e-50 | -8.615850e-47 |
| Msa0211650 | Msa1350690 | 0.812874 | 3.403550e-51 | -8.615850e-47 |
| Msa0211650 | Msa1355700 | 0.810845 | 9.415056e-51 | -8.615850e-47 |
| Msa0211650 | Msa1363700 | 0.830194 | 3.367957e-55 | -8.615850e-47 |
| Msa0211650 | Msa1365860 | 0.842189 | 3.010183e-58 | -8.615850e-47 |
| Msa0211650 | Msa1371090 | 0.815721 | 7.997197e-52 | -8.615850e-47 |
| Msa0211650 | Msa1383350 | 0.805359 | 1.386588e-49 | -8.615850e-47 |
| Msa0211650 | Msa1390230 | 0.814346 | 1.614475e-51 | -8.615850e-47 |
| Msa0211650 | Msa1397940 | 0.804703 | 1.901643e-49 | -8.615850e-47 |
| Msa0211650 | Msa1426920 | 0.809656 | 1.698612e-50 | -8.615850e-47 |
| Msa0211650 | Msa1433600 | 0.806369 | 8.507582e-50 | -8.615850e-47 |
| Msa0211650 | Msa1438640 | 0.807345 | 5.289068e-50 | -8.615850e-47 |
| Msa0211650 | Msa1452470 | 0.801569 | 8.463378e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCAACGGAGGCTAAATT+TGG | 0.231726 | 2_1:-53165972 | Msa0211650:CDS |
| ATCACACCACCGGAACTAAA+TGG | 0.240896 | 2_1:+53166431 | None:intergenic |
| TCTTTCTGTCAGAAAATATT+AGG | 0.269496 | 2_1:-53166458 | Msa0211650:CDS |
| AGGACAATGTTGTGGATAAA+TGG | 0.274190 | 2_1:-53165828 | Msa0211650:CDS |
| GGTATTTGATAGCTTGTTAT+CGG | 0.339708 | 2_1:-53165509 | Msa0211650:intron |
| TGAAGGTTATACCATGAAAA+AGG | 0.358014 | 2_1:-53165785 | Msa0211650:intron |
| TTAGGCAACCCATTTAGTTC+CGG | 0.419445 | 2_1:-53166440 | Msa0211650:CDS |
| TGGTTTCATTATTCTGATGA+AGG | 0.436447 | 2_1:-53165802 | Msa0211650:CDS |
| TCACACCACCGGAACTAAAT+GGG | 0.472555 | 2_1:+53166432 | None:intergenic |
| GATAGCTTGTTATCGGTGGC+TGG | 0.475459 | 2_1:-53165502 | Msa0211650:intron |
| CTTGTTATCGGTGGCTGGCA+AGG | 0.496694 | 2_1:-53165497 | Msa0211650:CDS |
| TAGAAATGGCTGTGGAATTG+AGG | 0.505903 | 2_1:-53166538 | None:intergenic |
| CTCCAAGAAAGCTTCAACGG+AGG | 0.506059 | 2_1:-53165982 | Msa0211650:intron |
| GGACAATGTTGTGGATAAAT+GGG | 0.513487 | 2_1:-53165827 | Msa0211650:CDS |
| GAGTCTCAAGTCATTGAAGC+TGG | 0.518318 | 2_1:-53166516 | Msa0211650:CDS |
| ATGTTGTGGATAAATGGGTT+TGG | 0.525679 | 2_1:-53165822 | Msa0211650:CDS |
| ATTTAGTTCCGGTGGTGTGA+TGG | 0.528827 | 2_1:-53166429 | Msa0211650:CDS |
| TTTCTCCAAGAAAGCTTCAA+CGG | 0.540735 | 2_1:-53165985 | Msa0211650:intron |
| GGATGAAGAGGCAATGGTTG+AGG | 0.543302 | 2_1:-53165951 | Msa0211650:intron |
| CTCAACTGCCATCACACCAC+CGG | 0.556720 | 2_1:+53166421 | None:intergenic |
| AAATTTGGATGAAGAGGCAA+TGG | 0.567056 | 2_1:-53165957 | Msa0211650:CDS |
| ATTTGATAGCTTGTTATCGG+TGG | 0.569825 | 2_1:-53165506 | Msa0211650:intron |
| GGCAACCCATTTAGTTCCGG+TGG | 0.576497 | 2_1:-53166437 | Msa0211650:CDS |
| GAGGCTAAATTTGGATGAAG+AGG | 0.599355 | 2_1:-53165963 | Msa0211650:CDS |
| TCGGGGAGTAGAAATGGCTG+TGG | 0.605719 | 2_1:-53166546 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAATACATTTGAGTTTAA+TGG | - | chr2_1:53165857-53165876 | Msa0211650:intron | 20.0% |
| !!! | CGAATAAAGATACTTTTAAA+GGG | + | chr2_1:53166309-53166328 | None:intergenic | 20.0% |
| !! | TTAGGTTCATTATTATGTTT+CGG | - | chr2_1:53166403-53166422 | Msa0211650:intron | 20.0% |
| !!! | CATAATACATTTGAGTTTAA+TGG | - | chr2_1:53165857-53165876 | Msa0211650:intron | 20.0% |
| !!! | CGAATAAAGATACTTTTAAA+GGG | + | chr2_1:53166309-53166328 | None:intergenic | 20.0% |
| !! | TTAGGTTCATTATTATGTTT+CGG | - | chr2_1:53166403-53166422 | Msa0211650:intron | 20.0% |
| ! | TCTTTCTGTCAGAAAATATT+AGG | - | chr2_1:53165535-53165554 | Msa0211650:intron | 25.0% |
| !! | AATACATTTGAGTTTAATGG+AGG | - | chr2_1:53165860-53165879 | Msa0211650:intron | 25.0% |
| !!! | GCTAACAATTTTTTTTTTGC+AGG | - | chr2_1:53166145-53166164 | Msa0211650:intron | 25.0% |
| !!! | AAATTATTACTCAAGTTGAG+CGG | - | chr2_1:53166239-53166258 | Msa0211650:intron | 25.0% |
| !! | GCGAATAAAGATACTTTTAA+AGG | + | chr2_1:53166310-53166329 | None:intergenic | 25.0% |
| !!! | TAAAAGTATCTTTATTCGCA+TGG | - | chr2_1:53166311-53166330 | Msa0211650:intron | 25.0% |
| ! | AACAAAGCGATAGTTTAAAT+CGG | - | chr2_1:53166357-53166376 | Msa0211650:intron | 25.0% |
| !!! | GTTCTTGGTTTTGATTTTTT+TGG | - | chr2_1:53166460-53166479 | Msa0211650:CDS | 25.0% |
| !!! | ACTTTTGCATTTAGGTTATT+TGG | - | chr2_1:53166525-53166544 | Msa0211650:CDS | 25.0% |
| ! | TCTTTCTGTCAGAAAATATT+AGG | - | chr2_1:53165535-53165554 | Msa0211650:intron | 25.0% |
| !! | AATACATTTGAGTTTAATGG+AGG | - | chr2_1:53165860-53165879 | Msa0211650:intron | 25.0% |
| !!! | GCTAACAATTTTTTTTTTGC+AGG | - | chr2_1:53166145-53166164 | Msa0211650:intron | 25.0% |
| !!! | AAATTATTACTCAAGTTGAG+CGG | - | chr2_1:53166239-53166258 | Msa0211650:intron | 25.0% |
| !! | GCGAATAAAGATACTTTTAA+AGG | + | chr2_1:53166310-53166329 | None:intergenic | 25.0% |
| !!! | TAAAAGTATCTTTATTCGCA+TGG | - | chr2_1:53166311-53166330 | Msa0211650:intron | 25.0% |
| ! | AACAAAGCGATAGTTTAAAT+CGG | - | chr2_1:53166357-53166376 | Msa0211650:intron | 25.0% |
| !!! | GTTCTTGGTTTTGATTTTTT+TGG | - | chr2_1:53166460-53166479 | Msa0211650:CDS | 25.0% |
| !!! | ACTTTTGCATTTAGGTTATT+TGG | - | chr2_1:53166525-53166544 | Msa0211650:CDS | 25.0% |
| GTTGAGTAACAGATATCATT+AGG | - | chr2_1:53165589-53165608 | Msa0211650:intron | 30.0% | |
| ! | ATACAAAGCCTTCTTTTAGT+AGG | - | chr2_1:53165685-53165704 | Msa0211650:intron | 30.0% |
| GTATACAACCTACTAAAAGA+AGG | + | chr2_1:53165696-53165715 | None:intergenic | 30.0% | |
| ! | TAGTATCTGAAATAGTAGTG+TGG | - | chr2_1:53165733-53165752 | Msa0211650:intron | 30.0% |
| AATTGTCTCGAAAAAGAATG+TGG | + | chr2_1:53165821-53165840 | None:intergenic | 30.0% | |
| ATTGTTAGCTATCAGAAACA+TGG | + | chr2_1:53166134-53166153 | None:intergenic | 30.0% | |
| TGGTTTCATTATTCTGATGA+AGG | - | chr2_1:53166191-53166210 | Msa0211650:intron | 30.0% | |
| TGAAGGTTATACCATGAAAA+AGG | - | chr2_1:53166208-53166227 | Msa0211650:intron | 30.0% | |
| !! | TTTGATAAGCACCTTTTTCA+TGG | + | chr2_1:53166222-53166241 | None:intergenic | 30.0% |
| GATTTAAACTATCGCTTTGT+TGG | + | chr2_1:53166358-53166377 | None:intergenic | 30.0% | |
| TAATGAACCTAAACTCCTAA+AGG | + | chr2_1:53166395-53166414 | None:intergenic | 30.0% | |
| !!! | CTTGGTTTTGATTTTTTTGG+CGG | - | chr2_1:53166463-53166482 | Msa0211650:CDS | 30.0% |
| !! | GGTATTTGATAGCTTGTTAT+CGG | - | chr2_1:53166484-53166503 | Msa0211650:CDS | 30.0% |
| GTTGAGTAACAGATATCATT+AGG | - | chr2_1:53165589-53165608 | Msa0211650:intron | 30.0% | |
| ! | ATACAAAGCCTTCTTTTAGT+AGG | - | chr2_1:53165685-53165704 | Msa0211650:intron | 30.0% |
| GTATACAACCTACTAAAAGA+AGG | + | chr2_1:53165696-53165715 | None:intergenic | 30.0% | |
| ! | TAGTATCTGAAATAGTAGTG+TGG | - | chr2_1:53165733-53165752 | Msa0211650:intron | 30.0% |
| AATTGTCTCGAAAAAGAATG+TGG | + | chr2_1:53165821-53165840 | None:intergenic | 30.0% | |
| ATTGTTAGCTATCAGAAACA+TGG | + | chr2_1:53166134-53166153 | None:intergenic | 30.0% | |
| TGGTTTCATTATTCTGATGA+AGG | - | chr2_1:53166191-53166210 | Msa0211650:intron | 30.0% | |
| TGAAGGTTATACCATGAAAA+AGG | - | chr2_1:53166208-53166227 | Msa0211650:intron | 30.0% | |
| !! | TTTGATAAGCACCTTTTTCA+TGG | + | chr2_1:53166222-53166241 | None:intergenic | 30.0% |
| GATTTAAACTATCGCTTTGT+TGG | + | chr2_1:53166358-53166377 | None:intergenic | 30.0% | |
| TAATGAACCTAAACTCCTAA+AGG | + | chr2_1:53166395-53166414 | None:intergenic | 30.0% | |
| !!! | CTTGGTTTTGATTTTTTTGG+CGG | - | chr2_1:53166463-53166482 | Msa0211650:CDS | 30.0% |
| !! | GGTATTTGATAGCTTGTTAT+CGG | - | chr2_1:53166484-53166503 | Msa0211650:CDS | 30.0% |
| GAGTAACAGATATCATTAGG+CGG | - | chr2_1:53165592-53165611 | Msa0211650:intron | 35.0% | |
| ! | ATTGCCTTTAAGTTAGCAGT+GGG | + | chr2_1:53165621-53165640 | None:intergenic | 35.0% |
| AATGAACACTACATAGATGC+CGG | - | chr2_1:53165638-53165657 | Msa0211650:intron | 35.0% | |
| CTTCAAAAGACAAATCATCC+CGG | + | chr2_1:53165660-53165679 | None:intergenic | 35.0% | |
| GGATCATACAGCAAATACAA+TGG | + | chr2_1:53165933-53165952 | None:intergenic | 35.0% | |
| ! | TTTGCTGTATGATCCATCTT+TGG | - | chr2_1:53165938-53165957 | Msa0211650:intron | 35.0% |
| TTTCTCCAAGAAAGCTTCAA+CGG | - | chr2_1:53166008-53166027 | Msa0211650:intron | 35.0% | |
| AAATTTGGATGAAGAGGCAA+TGG | - | chr2_1:53166036-53166055 | Msa0211650:intron | 35.0% | |
| !!! | TTTTTTGCAGGACAATGTTG+TGG | - | chr2_1:53166157-53166176 | Msa0211650:intron | 35.0% |
| AGGACAATGTTGTGGATAAA+TGG | - | chr2_1:53166165-53166184 | Msa0211650:intron | 35.0% | |
| GGACAATGTTGTGGATAAAT+GGG | - | chr2_1:53166166-53166185 | Msa0211650:intron | 35.0% | |
| ! | ATGTTGTGGATAAATGGGTT+TGG | - | chr2_1:53166171-53166190 | Msa0211650:intron | 35.0% |
| !! | CATGGAGAATTTTCAAGAAG+AGG | - | chr2_1:53166329-53166348 | Msa0211650:intron | 35.0% |
| GGTTCATTATTATGTTTCGG+TGG | - | chr2_1:53166406-53166425 | Msa0211650:intron | 35.0% | |
| TTATTATGTTTCGGTGGTTG+TGG | - | chr2_1:53166412-53166431 | Msa0211650:intron | 35.0% | |
| ACAGTCAATCATCTTGTTCT+TGG | - | chr2_1:53166445-53166464 | Msa0211650:CDS | 35.0% | |
| !! | ATTTGATAGCTTGTTATCGG+TGG | - | chr2_1:53166487-53166506 | Msa0211650:CDS | 35.0% |
| !! | GGAAGTTCACTTTTGCATTT+AGG | - | chr2_1:53166517-53166536 | Msa0211650:CDS | 35.0% |
| GAGTAACAGATATCATTAGG+CGG | - | chr2_1:53165592-53165611 | Msa0211650:intron | 35.0% | |
| ! | ATTGCCTTTAAGTTAGCAGT+GGG | + | chr2_1:53165621-53165640 | None:intergenic | 35.0% |
| AATGAACACTACATAGATGC+CGG | - | chr2_1:53165638-53165657 | Msa0211650:intron | 35.0% | |
| CTTCAAAAGACAAATCATCC+CGG | + | chr2_1:53165660-53165679 | None:intergenic | 35.0% | |
| GGATCATACAGCAAATACAA+TGG | + | chr2_1:53165933-53165952 | None:intergenic | 35.0% | |
| ! | TTTGCTGTATGATCCATCTT+TGG | - | chr2_1:53165938-53165957 | Msa0211650:intron | 35.0% |
| TTTCTCCAAGAAAGCTTCAA+CGG | - | chr2_1:53166008-53166027 | Msa0211650:intron | 35.0% | |
| AAATTTGGATGAAGAGGCAA+TGG | - | chr2_1:53166036-53166055 | Msa0211650:intron | 35.0% | |
| !!! | TTTTTTGCAGGACAATGTTG+TGG | - | chr2_1:53166157-53166176 | Msa0211650:intron | 35.0% |
| AGGACAATGTTGTGGATAAA+TGG | - | chr2_1:53166165-53166184 | Msa0211650:intron | 35.0% | |
| GGACAATGTTGTGGATAAAT+GGG | - | chr2_1:53166166-53166185 | Msa0211650:intron | 35.0% | |
| ! | ATGTTGTGGATAAATGGGTT+TGG | - | chr2_1:53166171-53166190 | Msa0211650:intron | 35.0% |
| !! | CATGGAGAATTTTCAAGAAG+AGG | - | chr2_1:53166329-53166348 | Msa0211650:intron | 35.0% |
| GGTTCATTATTATGTTTCGG+TGG | - | chr2_1:53166406-53166425 | Msa0211650:intron | 35.0% | |
| TTATTATGTTTCGGTGGTTG+TGG | - | chr2_1:53166412-53166431 | Msa0211650:intron | 35.0% | |
| ACAGTCAATCATCTTGTTCT+TGG | - | chr2_1:53166445-53166464 | Msa0211650:CDS | 35.0% | |
| !! | ATTTGATAGCTTGTTATCGG+TGG | - | chr2_1:53166487-53166506 | Msa0211650:CDS | 35.0% |
| !! | GGAAGTTCACTTTTGCATTT+AGG | - | chr2_1:53166517-53166536 | Msa0211650:CDS | 35.0% |
| ! | TTAGGCAACCCATTTAGTTC+CGG | - | chr2_1:53165553-53165572 | Msa0211650:intron | 40.0% |
| ! | CATTGCCTTTAAGTTAGCAG+TGG | + | chr2_1:53165622-53165641 | None:intergenic | 40.0% |
| ATGAACACTACATAGATGCC+GGG | - | chr2_1:53165639-53165658 | Msa0211650:intron | 40.0% | |
| ! | AAGAGTACAAGCACCAAAGA+TGG | + | chr2_1:53165954-53165973 | None:intergenic | 40.0% |
| GAGGCTAAATTTGGATGAAG+AGG | - | chr2_1:53166030-53166049 | Msa0211650:intron | 40.0% | |
| ! | GAGAAGACGATTGTTTTCCT+GGG | - | chr2_1:53166089-53166108 | Msa0211650:intron | 40.0% |
| AGCGATAGTTTAAATCGGCA+TGG | - | chr2_1:53166362-53166381 | Msa0211650:intron | 40.0% | |
| TAGTTTAAATCGGCATGGAG+TGG | - | chr2_1:53166367-53166386 | Msa0211650:intron | 40.0% | |
| ! | TTAGGCAACCCATTTAGTTC+CGG | - | chr2_1:53165553-53165572 | Msa0211650:intron | 40.0% |
| ! | CATTGCCTTTAAGTTAGCAG+TGG | + | chr2_1:53165622-53165641 | None:intergenic | 40.0% |
| ATGAACACTACATAGATGCC+GGG | - | chr2_1:53165639-53165658 | Msa0211650:intron | 40.0% | |
| ! | AAGAGTACAAGCACCAAAGA+TGG | + | chr2_1:53165954-53165973 | None:intergenic | 40.0% |
| GAGGCTAAATTTGGATGAAG+AGG | - | chr2_1:53166030-53166049 | Msa0211650:intron | 40.0% | |
| ! | GAGAAGACGATTGTTTTCCT+GGG | - | chr2_1:53166089-53166108 | Msa0211650:intron | 40.0% |
| AGCGATAGTTTAAATCGGCA+TGG | - | chr2_1:53166362-53166381 | Msa0211650:intron | 40.0% | |
| TAGTTTAAATCGGCATGGAG+TGG | - | chr2_1:53166367-53166386 | Msa0211650:intron | 40.0% | |
| GAGTCTCAAGTCATTGAAGC+TGG | - | chr2_1:53165477-53165496 | Msa0211650:CDS | 45.0% | |
| TCACACCACCGGAACTAAAT+GGG | + | chr2_1:53165564-53165583 | None:intergenic | 45.0% | |
| ATCACACCACCGGAACTAAA+TGG | + | chr2_1:53165565-53165584 | None:intergenic | 45.0% | |
| ! | ATTTAGTTCCGGTGGTGTGA+TGG | - | chr2_1:53165564-53165583 | Msa0211650:intron | 45.0% |
| GCTTCAACGGAGGCTAAATT+TGG | - | chr2_1:53166021-53166040 | Msa0211650:intron | 45.0% | |
| ! | GGAGAAGACGATTGTTTTCC+TGG | - | chr2_1:53166088-53166107 | Msa0211650:intron | 45.0% |
| ! | AAGACGATTGTTTTCCTGGG+AGG | - | chr2_1:53166092-53166111 | Msa0211650:intron | 45.0% |
| ! | AGTGGTGCCTTTAGGAGTTT+AGG | - | chr2_1:53166385-53166404 | Msa0211650:intron | 45.0% |
| ATGTTTCGGTGGTTGTGGAA+AGG | - | chr2_1:53166417-53166436 | Msa0211650:intron | 45.0% | |
| GAGTCTCAAGTCATTGAAGC+TGG | - | chr2_1:53165477-53165496 | Msa0211650:CDS | 45.0% | |
| TCACACCACCGGAACTAAAT+GGG | + | chr2_1:53165564-53165583 | None:intergenic | 45.0% | |
| ATCACACCACCGGAACTAAA+TGG | + | chr2_1:53165565-53165584 | None:intergenic | 45.0% | |
| ! | ATTTAGTTCCGGTGGTGTGA+TGG | - | chr2_1:53165564-53165583 | Msa0211650:intron | 45.0% |
| GCTTCAACGGAGGCTAAATT+TGG | - | chr2_1:53166021-53166040 | Msa0211650:intron | 45.0% | |
| ! | GGAGAAGACGATTGTTTTCC+TGG | - | chr2_1:53166088-53166107 | Msa0211650:intron | 45.0% |
| ! | AAGACGATTGTTTTCCTGGG+AGG | - | chr2_1:53166092-53166111 | Msa0211650:intron | 45.0% |
| ! | AGTGGTGCCTTTAGGAGTTT+AGG | - | chr2_1:53166385-53166404 | Msa0211650:intron | 45.0% |
| ATGTTTCGGTGGTTGTGGAA+AGG | - | chr2_1:53166417-53166436 | Msa0211650:intron | 45.0% | |
| GCCTCCCACTGCTAACTTAA+AGG | - | chr2_1:53165614-53165633 | Msa0211650:intron | 50.0% | |
| ! | GCCTTTAAGTTAGCAGTGGG+AGG | + | chr2_1:53165618-53165637 | None:intergenic | 50.0% |
| CTCCAAGAAAGCTTCAACGG+AGG | - | chr2_1:53166011-53166030 | Msa0211650:intron | 50.0% | |
| AGCCTCCGTTGAAGCTTTCT+TGG | + | chr2_1:53166016-53166035 | None:intergenic | 50.0% | |
| GGATGAAGAGGCAATGGTTG+AGG | - | chr2_1:53166042-53166061 | Msa0211650:intron | 50.0% | |
| !! | GCAATGGTTGAGGTGCTGAT+GGG | - | chr2_1:53166052-53166071 | Msa0211650:intron | 50.0% |
| ! | ACGATTGTTTTCCTGGGAGG+AGG | - | chr2_1:53166095-53166114 | Msa0211650:intron | 50.0% |
| TTTCGGTGGTTGTGGAAAGG+AGG | - | chr2_1:53166420-53166439 | Msa0211650:intron | 50.0% | |
| !! | GATAGCTTGTTATCGGTGGC+TGG | - | chr2_1:53166491-53166510 | Msa0211650:CDS | 50.0% |
| GCCTCCCACTGCTAACTTAA+AGG | - | chr2_1:53165614-53165633 | Msa0211650:intron | 50.0% | |
| ! | GCCTTTAAGTTAGCAGTGGG+AGG | + | chr2_1:53165618-53165637 | None:intergenic | 50.0% |
| CTCCAAGAAAGCTTCAACGG+AGG | - | chr2_1:53166011-53166030 | Msa0211650:intron | 50.0% | |
| AGCCTCCGTTGAAGCTTTCT+TGG | + | chr2_1:53166016-53166035 | None:intergenic | 50.0% | |
| GGATGAAGAGGCAATGGTTG+AGG | - | chr2_1:53166042-53166061 | Msa0211650:intron | 50.0% | |
| !! | GCAATGGTTGAGGTGCTGAT+GGG | - | chr2_1:53166052-53166071 | Msa0211650:intron | 50.0% |
| ! | ACGATTGTTTTCCTGGGAGG+AGG | - | chr2_1:53166095-53166114 | Msa0211650:intron | 50.0% |
| TTTCGGTGGTTGTGGAAAGG+AGG | - | chr2_1:53166420-53166439 | Msa0211650:intron | 50.0% | |
| !! | GATAGCTTGTTATCGGTGGC+TGG | - | chr2_1:53166491-53166510 | Msa0211650:CDS | 50.0% |
| ! | GGCAACCCATTTAGTTCCGG+TGG | - | chr2_1:53165556-53165575 | Msa0211650:intron | 55.0% |
| CTCAACTGCCATCACACCAC+CGG | + | chr2_1:53165575-53165594 | None:intergenic | 55.0% | |
| !! | GGCAATGGTTGAGGTGCTGA+TGG | - | chr2_1:53166051-53166070 | Msa0211650:intron | 55.0% |
| !! | GAGGTGCTGATGGGCAAGAA+TGG | - | chr2_1:53166061-53166080 | Msa0211650:intron | 55.0% |
| ! | GTGCTGATGGGCAAGAATGG+TGG | - | chr2_1:53166064-53166083 | Msa0211650:intron | 55.0% |
| ! | CTGATGGGCAAGAATGGTGG+TGG | - | chr2_1:53166067-53166086 | Msa0211650:intron | 55.0% |
| TTCCTGGGAGGAGGAACAGT+TGG | - | chr2_1:53166104-53166123 | Msa0211650:intron | 55.0% | |
| ! | CTTGTTATCGGTGGCTGGCA+AGG | - | chr2_1:53166496-53166515 | Msa0211650:CDS | 55.0% |
| ! | GGCAACCCATTTAGTTCCGG+TGG | - | chr2_1:53165556-53165575 | Msa0211650:intron | 55.0% |
| CTCAACTGCCATCACACCAC+CGG | + | chr2_1:53165575-53165594 | None:intergenic | 55.0% | |
| !! | GGCAATGGTTGAGGTGCTGA+TGG | - | chr2_1:53166051-53166070 | Msa0211650:intron | 55.0% |
| !! | GAGGTGCTGATGGGCAAGAA+TGG | - | chr2_1:53166061-53166080 | Msa0211650:intron | 55.0% |
| ! | GTGCTGATGGGCAAGAATGG+TGG | - | chr2_1:53166064-53166083 | Msa0211650:intron | 55.0% |
| ! | CTGATGGGCAAGAATGGTGG+TGG | - | chr2_1:53166067-53166086 | Msa0211650:intron | 55.0% |
| TTCCTGGGAGGAGGAACAGT+TGG | - | chr2_1:53166104-53166123 | Msa0211650:intron | 55.0% | |
| ! | CTTGTTATCGGTGGCTGGCA+AGG | - | chr2_1:53166496-53166515 | Msa0211650:CDS | 55.0% |
| AGCCAACTGTTCCTCCTCCC+AGG | + | chr2_1:53166109-53166128 | None:intergenic | 60.0% | |
| CGGCATGGAGTGGTGCCTTT+AGG | - | chr2_1:53166377-53166396 | Msa0211650:intron | 60.0% | |
| AGCCAACTGTTCCTCCTCCC+AGG | + | chr2_1:53166109-53166128 | None:intergenic | 60.0% | |
| CGGCATGGAGTGGTGCCTTT+AGG | - | chr2_1:53166377-53166396 | Msa0211650:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 53165460 | 53166555 | 53165460 | ID=Msa0211650;Name=Msa0211650 |
| chr2_1 | mRNA | 53165460 | 53166555 | 53165460 | ID=Msa0211650-mRNA-1;Parent=Msa0211650;Name=Msa0211650-mRNA-1;_AED=0.77;_eAED=1.00;_QI=0|0|0|0.25|1|1|4|0|100 |
| chr2_1 | exon | 53166422 | 53166555 | 53166422 | ID=Msa0211650-mRNA-1:exon:14798;Parent=Msa0211650-mRNA-1 |
| chr2_1 | exon | 53165952 | 53165997 | 53165952 | ID=Msa0211650-mRNA-1:exon:14797;Parent=Msa0211650-mRNA-1 |
| chr2_1 | exon | 53165786 | 53165848 | 53165786 | ID=Msa0211650-mRNA-1:exon:14796;Parent=Msa0211650-mRNA-1 |
| chr2_1 | exon | 53165460 | 53165519 | 53165460 | ID=Msa0211650-mRNA-1:exon:14795;Parent=Msa0211650-mRNA-1 |
| chr2_1 | CDS | 53166422 | 53166555 | 53166422 | ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1 |
| chr2_1 | CDS | 53165952 | 53165997 | 53165952 | ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1 |
| chr2_1 | CDS | 53165786 | 53165848 | 53165786 | ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1 |
| chr2_1 | CDS | 53165460 | 53165519 | 53165460 | ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
