AlfalfaGEDB | Msa0211650

M. sativa cultivar zhongmu-4 / Msa0211650

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0211650	-0.815892	7.323895e-52	-8.615850e-47
Msa0006880	Msa0211650	0.850205	1.974450e-60	-8.615850e-47
Msa0007850	Msa0211650	0.812476	4.160051e-51	-8.615850e-47
Msa0026660	Msa0211650	0.818917	1.526157e-52	-8.615850e-47
Msa0027580	Msa0211650	0.818409	1.990279e-52	-8.615850e-47
Msa0036370	Msa0211650	0.812236	4.691714e-51	-8.615850e-47
Msa0055100	Msa0211650	0.816944	4.259078e-52	-8.615850e-47
Msa0055150	Msa0211650	0.837177	6.062421e-57	-8.615850e-47
Msa0057140	Msa0211650	0.803754	2.997399e-49	-8.615850e-47
Msa0061970	Msa0211650	0.800309	1.531363e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 25 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGATGAAGAGGCAA+TGG	0.567056	2_1:-53165957	Msa0211650:CDS
AGGACAATGTTGTGGATAAA+TGG	0.274190	2_1:-53165828	Msa0211650:CDS
ATCACACCACCGGAACTAAA+TGG	0.240896	2_1:+53166431	None:intergenic
ATGTTGTGGATAAATGGGTT+TGG	0.525679	2_1:-53165822	Msa0211650:CDS
ATTTAGTTCCGGTGGTGTGA+TGG	0.528827	2_1:-53166429	Msa0211650:CDS
ATTTGATAGCTTGTTATCGG+TGG	0.569825	2_1:-53165506	Msa0211650:intron
CTCAACTGCCATCACACCAC+CGG	0.556720	2_1:+53166421	None:intergenic
CTCCAAGAAAGCTTCAACGG+AGG	0.506059	2_1:-53165982	Msa0211650:intron
CTTGTTATCGGTGGCTGGCA+AGG	0.496694	2_1:-53165497	Msa0211650:CDS
GAGGCTAAATTTGGATGAAG+AGG	0.599355	2_1:-53165963	Msa0211650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAGTAACAGATATCATT+AGG	-	chr2_1:53165589-53165608	Msa0211650:intron	30.0%
GTATACAACCTACTAAAAGA+AGG	+	chr2_1:53165696-53165715	None:intergenic	30.0%
AATTGTCTCGAAAAAGAATG+TGG	+	chr2_1:53165821-53165840	None:intergenic	30.0%
ATTGTTAGCTATCAGAAACA+TGG	+	chr2_1:53166134-53166153	None:intergenic	30.0%
TGGTTTCATTATTCTGATGA+AGG	-	chr2_1:53166191-53166210	Msa0211650:intron	30.0%
TGAAGGTTATACCATGAAAA+AGG	-	chr2_1:53166208-53166227	Msa0211650:intron	30.0%
GATTTAAACTATCGCTTTGT+TGG	+	chr2_1:53166358-53166377	None:intergenic	30.0%
TAATGAACCTAAACTCCTAA+AGG	+	chr2_1:53166395-53166414	None:intergenic	30.0%
GTTGAGTAACAGATATCATT+AGG	-	chr2_1:53165589-53165608	Msa0211650:intron	30.0%
GTATACAACCTACTAAAAGA+AGG	+	chr2_1:53165696-53165715	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	53165460	53166555	53165460	ID=Msa0211650;Name=Msa0211650
chr2_1	mRNA	53165460	53166555	53165460	ID=Msa0211650-mRNA-1;Parent=Msa0211650;Name=Msa0211650-mRNA-1;_AED=0.77;_eAED=1.00;_QI=0\|0\|0\|0.25\|1\|1\|4\|0\|100
chr2_1	exon	53166422	53166555	53166422	ID=Msa0211650-mRNA-1:exon:14798;Parent=Msa0211650-mRNA-1
chr2_1	exon	53165952	53165997	53165952	ID=Msa0211650-mRNA-1:exon:14797;Parent=Msa0211650-mRNA-1
chr2_1	exon	53165786	53165848	53165786	ID=Msa0211650-mRNA-1:exon:14796;Parent=Msa0211650-mRNA-1
chr2_1	exon	53165460	53165519	53165460	ID=Msa0211650-mRNA-1:exon:14795;Parent=Msa0211650-mRNA-1
chr2_1	CDS	53166422	53166555	53166422	ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1
chr2_1	CDS	53165952	53165997	53165952	ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1
chr2_1	CDS	53165786	53165848	53165786	ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1
chr2_1	CDS	53165460	53165519	53165460	ID=Msa0211650-mRNA-1:cds;Parent=Msa0211650-mRNA-1

Gene Sequence	>Msa0211650 ATGGCTGTGGAATTGAGGAGTCTCAAGTCATTGAAGCTGGAAATCAAGAGTAGAAATGTAGATAGCATGTTCTTCTCTTTCTGTCAGAAAATATTAGGCAACCCATTTAGTTCCGGTGGTGTGATGGCAGTTGAAAAGCTTCAACGGAGGCTAAATTTGGATGAAGAGGCAATGGTTGAGGACAATGTTGTGGATAAATGGGTTTGGTTTCATTATTCTGATGAAGGTTATACCATGAAAAAGCTTGTTATCGGTGGCTGGCAAGGAAGTTCACTTTTGCATTTAGGTTATTTGGCTGACTAG
Protein sequence	>Msa0211650 MAVELRSLKSLKLEIKSRNVDSMFFSFCQKILGNPFSSGGVMAVEKLQRRLNLDEEAMVEDNVVDKWVWFHYSDEGYTMKKLVIGGWQGSSLLHLGYLAD*