Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207070 | XP_013463544.1 | 94.684 | 301 | 13 | 1 | 7 | 307 | 1 | 298 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207070 | A0A072V684 | 94.684 | 301 | 13 | 1 | 7 | 307 | 1 | 298 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0207070 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0207070 | Msa0246190 | 0.834356 | 3.142293e-56 | -8.615850e-47 |
| Msa0207070 | Msa0284690 | 0.951331 | 2.559756e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207070 | MtrunA17_Chr2g0300621 | 94.684 | 301 | 13 | 1 | 7 | 307 | 1 | 298 | 0.0 | 592 |
| Msa0207070 | MtrunA17_Chr4g0073171 | 28.723 | 188 | 109 | 5 | 115 | 286 | 58 | 236 | 7.42e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207070 | AT2G06025.1 | 56.522 | 299 | 116 | 3 | 7 | 305 | 1 | 285 | 3.92e-117 | 339 |
| Msa0207070 | AT2G06025.6 | 56.522 | 299 | 116 | 3 | 7 | 305 | 1 | 285 | 3.92e-117 | 339 |
| Msa0207070 | AT2G06025.4 | 56.522 | 299 | 116 | 3 | 7 | 305 | 1 | 285 | 3.92e-117 | 339 |
| Msa0207070 | AT2G06025.3 | 56.641 | 256 | 97 | 3 | 7 | 262 | 1 | 242 | 5.91e-99 | 291 |
| Msa0207070 | AT2G06025.5 | 56.641 | 256 | 97 | 3 | 7 | 262 | 1 | 242 | 5.91e-99 | 291 |
| Msa0207070 | AT2G06025.2 | 56.641 | 256 | 97 | 3 | 7 | 262 | 1 | 242 | 5.91e-99 | 291 |
| Msa0207070 | AT2G06025.7 | 54.054 | 222 | 88 | 3 | 7 | 228 | 1 | 208 | 8.84e-79 | 239 |
| Msa0207070 | AT4G28030.1 | 30.097 | 206 | 102 | 7 | 111 | 292 | 58 | 245 | 1.11e-12 | 67.4 |
Find 92 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGTAATTAAATTAAATT+AGG | 0.247120 | 2_1:+37485012 | None:intergenic |
| AAACCTTCTTCCACCACTTT+AGG | 0.251194 | 2_1:+37484568 | None:intergenic |
| AGTCCATGAGGATGTAATTT+TGG | 0.254723 | 2_1:+37484839 | None:intergenic |
| ATTTGAGAAGCATAAAGTTT+TGG | 0.261676 | 2_1:+37485044 | None:intergenic |
| TCCTTGTCGACGAGCCAATT+TGG | 0.274791 | 2_1:+37482447 | None:intergenic |
| AAATTTATGTGTTGCCAAAT+TGG | 0.283413 | 2_1:-37482461 | Msa0207070:CDS |
| TGAAATTCAGGTTTATGAAT+TGG | 0.285497 | 2_1:+37484906 | None:intergenic |
| GTTTGATATGAATAGGTCTA+TGG | 0.288131 | 2_1:-37484686 | Msa0207070:intron |
| TAAAGTAAGATATGAAATTC+AGG | 0.293568 | 2_1:+37484894 | None:intergenic |
| CTCATTATAAATAAAGAATA+TGG | 0.297854 | 2_1:+37481756 | None:intergenic |
| AGAGAAAATAGATTTGAGTT+TGG | 0.303539 | 2_1:-37484490 | Msa0207070:CDS |
| AAGCGGTGCAAGGTGCAAAA+TGG | 0.311231 | 2_1:-37482948 | Msa0207070:CDS |
| GAGAAAATAGATTTGAGTTT+GGG | 0.321359 | 2_1:-37484489 | Msa0207070:CDS |
| GCATAGTCAAATTCAATAAA+AGG | 0.321610 | 2_1:+37481883 | None:intergenic |
| TCCACCACTTTAGGAACAAT+TGG | 0.325988 | 2_1:+37484577 | None:intergenic |
| CTGTGCTTGATGAAGAGTTT+TGG | 0.345709 | 2_1:-37484447 | Msa0207070:CDS |
| CTGTTTATGCTGCAACAAAA+AGG | 0.359050 | 2_1:+37482514 | None:intergenic |
| TTTGGTGCATTTGTAATTAT+GGG | 0.370191 | 2_1:+37484857 | None:intergenic |
| TATGCATACTCAAATGCATT+TGG | 0.372797 | 2_1:-37481865 | Msa0207070:three_prime_UTR |
| GTATACCTCAAATGATTTAC+AGG | 0.376199 | 2_1:+37482000 | None:intergenic |
| TTACCTCAAAGCCCATCTTT+TGG | 0.386865 | 2_1:+37482252 | None:intergenic |
| GTTCAATCCGTGACTGGAAT+GGG | 0.388919 | 2_1:+37481719 | None:intergenic |
| AGATTGAAAGAATAGGTTAA+TGG | 0.389296 | 2_1:+37484961 | None:intergenic |
| TGCAGACAGCAGCCTGGCTA+AGG | 0.397087 | 2_1:-37483667 | Msa0207070:intron |
| TCTCTCCTTGCAGCAAATAT+CGG | 0.397446 | 2_1:+37482651 | None:intergenic |
| GGCTAAGGGCAGAAAGTCAT+TGG | 0.397544 | 2_1:-37483652 | Msa0207070:CDS |
| CAGTTCCTGTAAATCATTTG+AGG | 0.405332 | 2_1:-37482005 | Msa0207070:three_prime_UTR |
| AGCGGTGCAAGGTGCAAAAT+GGG | 0.411100 | 2_1:-37482947 | Msa0207070:CDS |
| CCACATATACATTGACTAAA+GGG | 0.413073 | 2_1:+37481978 | None:intergenic |
| TAATGAAACAGAACAAGAAC+AGG | 0.417724 | 2_1:-37481829 | Msa0207070:three_prime_UTR |
| CCCTTTAGTCAATGTATATG+TGG | 0.424184 | 2_1:-37481978 | Msa0207070:three_prime_UTR |
| CATATTCTTTATTTATAATG+AGG | 0.433865 | 2_1:-37481755 | Msa0207070:three_prime_UTR |
| TCATTTAGCAGGTGTGAGTC+AGG | 0.439184 | 2_1:-37482321 | Msa0207070:intron |
| TAGTTAATTATGATCCAATC+TGG | 0.442431 | 2_1:-37482058 | Msa0207070:three_prime_UTR |
| ATGACTTTCTGCCCTTAGCC+AGG | 0.443627 | 2_1:+37483655 | None:intergenic |
| AGAACACCACCAAGTAGATA+TGG | 0.454568 | 2_1:-37482493 | Msa0207070:CDS |
| AATTTGCAACTGTTCCAGAT+TGG | 0.457980 | 2_1:+37482044 | None:intergenic |
| GTTGAAAATGCAAAATCTAA+TGG | 0.457985 | 2_1:-37482397 | Msa0207070:intron |
| AGTTTGGGCAATTTGTAGCT+AGG | 0.464831 | 2_1:-37484474 | Msa0207070:CDS |
| ACAGTTATTGTACCAAAAGA+TGG | 0.467482 | 2_1:-37482264 | Msa0207070:CDS |
| GTACCAAAAGATGGGCTTTG+AGG | 0.468548 | 2_1:-37482255 | Msa0207070:intron |
| CCACCACTTTAGGAACAATT+GGG | 0.469375 | 2_1:+37484578 | None:intergenic |
| GTTCCTAAAGTGGTGGAAGA+AGG | 0.470682 | 2_1:-37484571 | Msa0207070:CDS |
| TTCATCTAGATTGAAAGAAT+AGG | 0.471254 | 2_1:+37484954 | None:intergenic |
| CCCACATATACATTGACTAA+AGG | 0.483225 | 2_1:+37481977 | None:intergenic |
| ATTCCATTGTGGTGGCTGAC+TGG | 0.485365 | 2_1:-37485141 | Msa0207070:five_prime_UTR |
| TCATGTTTATCAGGTGAGAA+AGG | 0.487782 | 2_1:-37482735 | Msa0207070:intron |
| TGAATTGGAATAGTTGACAT+AGG | 0.492624 | 2_1:+37484921 | None:intergenic |
| CGTAGCAAGTATGTTTCCTC+TGG | 0.493901 | 2_1:+37482105 | None:intergenic |
| AAGCCCAATTGTTCCTAAAG+TGG | 0.498436 | 2_1:-37484581 | Msa0207070:CDS |
| AGTTCAATCCGTGACTGGAA+TGG | 0.504230 | 2_1:+37481718 | None:intergenic |
| CGAATGGTCTTCGATTTGAT+CGG | 0.516980 | 2_1:-37484540 | Msa0207070:CDS |
| TGCATGTGGACAGAAATAAT+AGG | 0.521792 | 2_1:-37482292 | Msa0207070:CDS |
| GCCAAATTGGCTCGTCGACA+AGG | 0.522479 | 2_1:-37482448 | Msa0207070:CDS |
| GCACCAAAATTACATCCTCA+TGG | 0.535293 | 2_1:-37484842 | Msa0207070:CDS |
| GCAATGTAACCATATCTACT+TGG | 0.536879 | 2_1:+37482484 | None:intergenic |
| CTAATCAACTCTTGTTCCGA+CGG | 0.540516 | 2_1:+37484511 | None:intergenic |
| TATTAAGAATAAGAAGATGA+AGG | 0.544766 | 2_1:-37484626 | Msa0207070:CDS |
| ATTTGATCGGTTGCAGCCGT+CGG | 0.545614 | 2_1:-37484527 | Msa0207070:CDS |
| GTGCATTTGTAATTATGGGT+TGG | 0.548458 | 2_1:+37484861 | None:intergenic |
| GTTTGGGCAATTTGTAGCTA+GGG | 0.550313 | 2_1:-37484473 | Msa0207070:CDS |
| GCTAAGGGCAGAAAGTCATT+GGG | 0.553474 | 2_1:-37483651 | Msa0207070:CDS |
| CAGTTATTGTACCAAAAGAT+GGG | 0.555181 | 2_1:-37482263 | Msa0207070:CDS |
| GAAGAAGGTTTGAGCTCGAA+TGG | 0.560918 | 2_1:-37484556 | Msa0207070:CDS |
| TTTACAGGAACTGAAGCAGT+TGG | 0.562202 | 2_1:+37482015 | None:intergenic |
| GTGGACAGAAATAATAGGCC+GGG | 0.563824 | 2_1:-37482287 | Msa0207070:CDS |
| CCCAATTGTTCCTAAAGTGG+TGG | 0.571687 | 2_1:-37484578 | Msa0207070:CDS |
| TGGTTGAAACTGCAAACTCT+CGG | 0.577388 | 2_1:-37482134 | Msa0207070:CDS |
| CCTTTAGTCAATGTATATGT+GGG | 0.578134 | 2_1:-37481977 | Msa0207070:three_prime_UTR |
| TAAGAATAAGAAGATGAAGG+AGG | 0.579221 | 2_1:-37484623 | Msa0207070:CDS |
| GCAGACAGCAGCCTGGCTAA+GGG | 0.579446 | 2_1:-37483666 | Msa0207070:intron |
| TGTGGACAGAAATAATAGGC+CGG | 0.580627 | 2_1:-37482288 | Msa0207070:CDS |
| GGGAGAATCAAACATATGAA+AGG | 0.580964 | 2_1:-37483631 | Msa0207070:intron |
| AATATCCGATATTTGCTGCA+AGG | 0.586800 | 2_1:-37482656 | Msa0207070:CDS |
| TATTATCCATTCCATTGTGG+TGG | 0.589297 | 2_1:-37485149 | Msa0207070:five_prime_UTR |
| ACTTCTACTTTCCGGCGTGG+TGG | 0.590556 | 2_1:+37485104 | None:intergenic |
| ACATATTATCCATTCCATTG+TGG | 0.607935 | 2_1:-37485152 | Msa0207070:five_prime_UTR |
| AGTCAGCCACCACAATGGAA+TGG | 0.610310 | 2_1:+37485143 | None:intergenic |
| TAGTCAATGTATATGTGGGT+AGG | 0.611018 | 2_1:-37481973 | Msa0207070:three_prime_UTR |
| TTCAATCCGTGACTGGAATG+GGG | 0.640753 | 2_1:+37481720 | None:intergenic |
| TAGTCAAATTCAATAAAAGG+AGG | 0.655540 | 2_1:+37481886 | None:intergenic |
| ATGACTTCTACTTTCCGGCG+TGG | 0.658502 | 2_1:+37485101 | None:intergenic |
| AAAATCTTACATAGTCCATG+AGG | 0.666948 | 2_1:+37484827 | None:intergenic |
| CAGCTGCGCATGCATTATCG+CGG | 0.671835 | 2_1:-37482922 | Msa0207070:intron |
| AAACTCTCGGTTGTTACCAG+AGG | 0.674396 | 2_1:-37482121 | Msa0207070:CDS |
| ATGTAACCATATCTACTTGG+TGG | 0.675557 | 2_1:+37482487 | None:intergenic |
| GAGTCAGGTATATGTGCATG+TGG | 0.676318 | 2_1:-37482306 | Msa0207070:CDS |
| GCGGTGCAAGGTGCAAAATG+GGG | 0.677118 | 2_1:-37482946 | Msa0207070:CDS |
| TCACCAGTCAGCCACCACAA+TGG | 0.679839 | 2_1:+37485138 | None:intergenic |
| TATTGTTTAGGAATTTAATG+CGG | 0.686710 | 2_1:-37482976 | Msa0207070:intron |
| AATGAAACAGAACAAGAACA+GGG | 0.696176 | 2_1:-37481828 | Msa0207070:three_prime_UTR |
| TGTCATCAAATCCACCACGC+CGG | 0.715726 | 2_1:-37485115 | Msa0207070:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAACAAATTCAAA+CGG | + | chr2_1:37482497-37482516 | None:intergenic | 10.0% |
| !! | ATTACTTTAACAACAAAAAA+AGG | - | chr2_1:37481889-37481908 | Msa0207070:three_prime_UTR | 15.0% |
| !! | AATTATTGTTTGATATGAAT+AGG | - | chr2_1:37482194-37482213 | Msa0207070:intron | 15.0% |
| !! | AAAAATAAACAAATTCAAAC+GGG | + | chr2_1:37482496-37482515 | None:intergenic | 15.0% |
| !! | AAAACATTTAATGAAATGAA+GGG | + | chr2_1:37483375-37483394 | None:intergenic | 15.0% |
| !! | AAAAACATTTAATGAAATGA+AGG | + | chr2_1:37483376-37483395 | None:intergenic | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | + | chr2_1:37483484-37483503 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | + | chr2_1:37483485-37483504 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTTCATACATA+AGG | - | chr2_1:37483499-37483518 | Msa0207070:intron | 15.0% |
| !!! | TTTTCTAAATAGTAGAATAT+AGG | - | chr2_1:37483663-37483682 | Msa0207070:CDS | 15.0% |
| !! | CTCATTATAAATAAAGAATA+TGG | + | chr2_1:37485134-37485153 | None:intergenic | 15.0% |
| !!! | CATATTCTTTATTTATAATG+AGG | - | chr2_1:37485132-37485151 | Msa0207070:five_prime_UTR | 15.0% |
| !! | TAAAGTAAGATATGAAATTC+AGG | + | chr2_1:37481996-37482015 | None:intergenic | 20.0% |
| !!! | TATAATTTGTTTGTGTACTA+TGG | - | chr2_1:37482142-37482161 | Msa0207070:intron | 20.0% |
| !! | TATTAAGAATAAGAAGATGA+AGG | - | chr2_1:37482261-37482280 | Msa0207070:CDS | 20.0% |
| !! | ATAAATCAGTCAATTCAAAT+GGG | - | chr2_1:37482687-37482706 | Msa0207070:CDS | 20.0% |
| !!! | TTTGAAATTGAAAATTCTCA+AGG | - | chr2_1:37482772-37482791 | Msa0207070:intron | 20.0% |
| !! | TTCATGAAATTGTAGAAATT+TGG | + | chr2_1:37482963-37482982 | None:intergenic | 20.0% |
| !! | TACAATTTCATGAACTAAAA+TGG | - | chr2_1:37482969-37482988 | Msa0207070:CDS | 20.0% |
| !! | ACAAATGAATGATAAATGAT+TGG | + | chr2_1:37483130-37483149 | None:intergenic | 20.0% |
| !! | ATTAACAATAGGTAAGAATT+TGG | - | chr2_1:37483735-37483754 | Msa0207070:intron | 20.0% |
| !! | TTAACAATAGGTAAGAATTT+GGG | - | chr2_1:37483736-37483755 | Msa0207070:intron | 20.0% |
| !! | CATTAAATTCCTAAACAATA+GGG | + | chr2_1:37483911-37483930 | None:intergenic | 20.0% |
| !! | TATTGTTTAGGAATTTAATG+CGG | - | chr2_1:37483911-37483930 | Msa0207070:intron | 20.0% |
| !! | TGATCTAGTTAAAAAAATTC+AGG | - | chr2_1:37484011-37484030 | Msa0207070:intron | 20.0% |
| !! | ATACCACAAAAATTACAAAA+TGG | + | chr2_1:37484968-37484987 | None:intergenic | 20.0% |
| !!! | TTTGAGAAGCATAAAGTTTT+GGG | + | chr2_1:37481845-37481864 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATAAAGTTT+TGG | + | chr2_1:37481846-37481865 | None:intergenic | 25.0% |
| ! | AGATTGAAAGAATAGGTTAA+TGG | + | chr2_1:37481929-37481948 | None:intergenic | 25.0% |
| ! | TTCATCTAGATTGAAAGAAT+AGG | + | chr2_1:37481936-37481955 | None:intergenic | 25.0% |
| !! | TGAAATTCAGGTTTATGAAT+TGG | + | chr2_1:37481984-37482003 | None:intergenic | 25.0% |
| !! | TTTGGTGCATTTGTAATTAT+GGG | + | chr2_1:37482033-37482052 | None:intergenic | 25.0% |
| !!! | TTTTGGTGCATTTGTAATTA+TGG | + | chr2_1:37482034-37482053 | None:intergenic | 25.0% |
| !! | TTTTTGAATTCTGTGTTCTA+TGG | - | chr2_1:37482166-37482185 | Msa0207070:intron | 25.0% |
| !! | AGAGAAAATAGATTTGAGTT+TGG | - | chr2_1:37482397-37482416 | Msa0207070:intron | 25.0% |
| !! | GAGAAAATAGATTTGAGTTT+GGG | - | chr2_1:37482398-37482417 | Msa0207070:CDS | 25.0% |
| ! | CATAAATCAGTCAATTCAAA+TGG | - | chr2_1:37482686-37482705 | Msa0207070:CDS | 25.0% |
| ! | CATACAATTTCATACACTAA+GGG | + | chr2_1:37482713-37482732 | None:intergenic | 25.0% |
| ! | AATAAAGCTTAACCTAATGT+TGG | - | chr2_1:37483070-37483089 | Msa0207070:intron | 25.0% |
| !! | TTTTCTTTGATTCCAACATT+AGG | + | chr2_1:37483085-37483104 | None:intergenic | 25.0% |
| !! | ATCATTCATTTGTACTTTTG+TGG | - | chr2_1:37483137-37483156 | Msa0207070:intron | 25.0% |
| !!! | AATCTCCAATGTTTTTTCAT+AGG | - | chr2_1:37483300-37483319 | Msa0207070:intron | 25.0% |
| !!! | ATCTCCAATGTTTTTTCATA+GGG | - | chr2_1:37483301-37483320 | Msa0207070:intron | 25.0% |
| ! | TTAACCCTATGAAAAAACAT+TGG | + | chr2_1:37483308-37483327 | None:intergenic | 25.0% |
| ! | GCATTAAATTCCTAAACAAT+AGG | + | chr2_1:37483912-37483931 | None:intergenic | 25.0% |
| ! | AATTTAATGCGGTAAAAAAG+CGG | - | chr2_1:37483922-37483941 | Msa0207070:intron | 25.0% |
| !!! | TCGATAATAAAAAGTGTTGT+AGG | - | chr2_1:37484195-37484214 | Msa0207070:intron | 25.0% |
| ! | AAATTTATGTGTTGCCAAAT+TGG | - | chr2_1:37484426-37484445 | Msa0207070:intron | 25.0% |
| ! | GTTGAAAATGCAAAATCTAA+TGG | - | chr2_1:37484490-37484509 | Msa0207070:CDS | 25.0% |
| !!! | GTTAAGTTGAAGTAACTTTA+TGG | - | chr2_1:37484523-37484542 | Msa0207070:CDS | 25.0% |
| ! | CAACAATCTATAACAAAAAC+TGG | + | chr2_1:37484686-37484705 | None:intergenic | 25.0% |
| ! | ACATGTGAAATCAATAACTA+TGG | - | chr2_1:37484708-37484727 | Msa0207070:intron | 25.0% |
| ! | TAGTTAATTATGATCCAATC+TGG | - | chr2_1:37484829-37484848 | Msa0207070:intron | 25.0% |
| ! | TAGTCAAATTCAATAAAAGG+AGG | + | chr2_1:37485004-37485023 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATTCAATAAA+AGG | + | chr2_1:37485007-37485026 | None:intergenic | 25.0% |
| ACATATTATCCATTCCATTG+TGG | - | chr2_1:37481735-37481754 | Msa0207070:three_prime_UTR | 30.0% | |
| !! | TTTTGATGACTTCTACTTTC+CGG | + | chr2_1:37481794-37481813 | None:intergenic | 30.0% |
| !!! | ATAAAGTTTTGGGAAGAACA+TGG | + | chr2_1:37481835-37481854 | None:intergenic | 30.0% |
| TGAATTGGAATAGTTGACAT+AGG | + | chr2_1:37481969-37481988 | None:intergenic | 30.0% | |
| AAAATCTTACATAGTCCATG+AGG | + | chr2_1:37482063-37482082 | None:intergenic | 30.0% | |
| GTTTGATATGAATAGGTCTA+TGG | - | chr2_1:37482201-37482220 | Msa0207070:intron | 30.0% | |
| TAAGAATAAGAAGATGAAGG+AGG | - | chr2_1:37482264-37482283 | Msa0207070:CDS | 30.0% | |
| !! | TTGGGTATGTTTTAAACTGT+TGG | - | chr2_1:37482459-37482478 | Msa0207070:CDS | 30.0% |
| CCATACAATTTCATACACTA+AGG | + | chr2_1:37482714-37482733 | None:intergenic | 30.0% | |
| CCTTAGTGTATGAAATTGTA+TGG | - | chr2_1:37482711-37482730 | Msa0207070:CDS | 30.0% | |
| ! | CAATTTATTGTCTGACTTGT+AGG | - | chr2_1:37482815-37482834 | Msa0207070:intron | 30.0% |
| !! | ACTTGTAGGATTAGTTGATT+TGG | - | chr2_1:37482829-37482848 | Msa0207070:intron | 30.0% |
| ! | ATTCACTTTGTCTGTCTTTT+AGG | - | chr2_1:37482994-37483013 | Msa0207070:intron | 30.0% |
| TGAAGGGACTATAATTCAAA+GGG | + | chr2_1:37483359-37483378 | None:intergenic | 30.0% | |
| ATGAAGGGACTATAATTCAA+AGG | + | chr2_1:37483360-37483379 | None:intergenic | 30.0% | |
| GATTATAAACCAGATCAAGA+TGG | - | chr2_1:37483624-37483643 | Msa0207070:intron | 30.0% | |
| !! | CATTTGGCTTGATTAACAAT+AGG | - | chr2_1:37483724-37483743 | Msa0207070:intron | 30.0% |
| !! | CAAAAAGAAATTTGCTGATC+AGG | - | chr2_1:37483809-37483828 | Msa0207070:intron | 30.0% |
| AACAAGAATCCCTATTGTTT+AGG | - | chr2_1:37483899-37483918 | Msa0207070:intron | 30.0% | |
| TGTTTGGATTCATGTTTATC+AGG | - | chr2_1:37484143-37484162 | Msa0207070:intron | 30.0% | |
| ACAGTTATTGTACCAAAAGA+TGG | - | chr2_1:37484623-37484642 | Msa0207070:CDS | 30.0% | |
| CAGTTATTGTACCAAAAGAT+GGG | - | chr2_1:37484624-37484643 | Msa0207070:CDS | 30.0% | |
| !! | CTTTGAGGTAATGTAATTGT+TGG | - | chr2_1:37484647-37484666 | Msa0207070:CDS | 30.0% |
| ! | TTTCAACCATCTGAAATTGA+CGG | + | chr2_1:37484742-37484761 | None:intergenic | 30.0% |
| GTATACCTCAAATGATTTAC+AGG | + | chr2_1:37484890-37484909 | None:intergenic | 30.0% | |
| ! | CCACATATACATTGACTAAA+GGG | + | chr2_1:37484912-37484931 | None:intergenic | 30.0% |
| CCTTTAGTCAATGTATATGT+GGG | - | chr2_1:37484910-37484929 | Msa0207070:CDS | 30.0% | |
| GACATCCATACATAAAAAGA+TGG | + | chr2_1:37484943-37484962 | None:intergenic | 30.0% | |
| CCACAAAAATTACAAAATGG+AGG | + | chr2_1:37484965-37484984 | None:intergenic | 30.0% | |
| ! | CCTCCATTTTGTAATTTTTG+TGG | - | chr2_1:37484962-37484981 | Msa0207070:five_prime_UTR | 30.0% |
| TATGCATACTCAAATGCATT+TGG | - | chr2_1:37485022-37485041 | Msa0207070:five_prime_UTR | 30.0% | |
| TAATGAAACAGAACAAGAAC+AGG | - | chr2_1:37485058-37485077 | Msa0207070:five_prime_UTR | 30.0% | |
| AATGAAACAGAACAAGAACA+GGG | - | chr2_1:37485059-37485078 | Msa0207070:five_prime_UTR | 30.0% | |
| TATTATCCATTCCATTGTGG+TGG | - | chr2_1:37481738-37481757 | Msa0207070:three_prime_UTR | 35.0% | |
| GTGCATTTGTAATTATGGGT+TGG | + | chr2_1:37482029-37482048 | None:intergenic | 35.0% | |
| ! | AGTCCATGAGGATGTAATTT+TGG | + | chr2_1:37482051-37482070 | None:intergenic | 35.0% |
| ! | TGTGCTTGATGAAGAGTTTT+GGG | - | chr2_1:37482441-37482460 | Msa0207070:CDS | 35.0% |
| GGGAGAATCAAACATATGAA+AGG | - | chr2_1:37483256-37483275 | Msa0207070:intron | 35.0% | |
| GAAGGGACTATAATTCAAAG+GGG | + | chr2_1:37483358-37483377 | None:intergenic | 35.0% | |
| GATCACAGAGATAAAATGTG+AGG | + | chr2_1:37483404-37483423 | None:intergenic | 35.0% | |
| !! | TAGTGGGTCCCAATTATTTT+AGG | - | chr2_1:37483473-37483492 | Msa0207070:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+GGG | - | chr2_1:37483474-37483493 | Msa0207070:intron | 35.0% |
| AAAATGTGTTCCTTTCATCG+TGG | - | chr2_1:37483542-37483561 | Msa0207070:intron | 35.0% | |
| AACTTGTGTTGAGCATATTG+TGG | - | chr2_1:37483584-37483603 | Msa0207070:intron | 35.0% | |
| AAATGATTTACACCCACAAC+CGG | + | chr2_1:37483709-37483728 | None:intergenic | 35.0% | |
| !! | AAGAAATTTGCTGATCAGGT+AGG | - | chr2_1:37483813-37483832 | Msa0207070:intron | 35.0% |
| CCAGTGTATAGTACTAAGTA+AGG | + | chr2_1:37483858-37483877 | None:intergenic | 35.0% | |
| CCTTACTTAGTACTATACAC+TGG | - | chr2_1:37483855-37483874 | Msa0207070:intron | 35.0% | |
| CTTGACTATGATTCGACTTA+CGG | - | chr2_1:37484120-37484139 | Msa0207070:intron | 35.0% | |
| TCATGTTTATCAGGTGAGAA+AGG | - | chr2_1:37484152-37484171 | Msa0207070:intron | 35.0% | |
| ! | AATATCCGATATTTGCTGCA+AGG | - | chr2_1:37484231-37484250 | Msa0207070:intron | 35.0% |
| AGTCATCATATCATTTCTGC+AGG | - | chr2_1:37484336-37484355 | Msa0207070:intron | 35.0% | |
| CTGTTTATGCTGCAACAAAA+AGG | + | chr2_1:37484376-37484395 | None:intergenic | 35.0% | |
| ATGTAACCATATCTACTTGG+TGG | + | chr2_1:37484403-37484422 | None:intergenic | 35.0% | |
| GCAATGTAACCATATCTACT+TGG | + | chr2_1:37484406-37484425 | None:intergenic | 35.0% | |
| GCTAAATGAATCCACAAATC+AGG | + | chr2_1:37484555-37484574 | None:intergenic | 35.0% | |
| GATTTGTGGATTCATTTAGC+AGG | - | chr2_1:37484555-37484574 | Msa0207070:CDS | 35.0% | |
| TGCATGTGGACAGAAATAAT+AGG | - | chr2_1:37484595-37484614 | Msa0207070:CDS | 35.0% | |
| ! | TTTTGGTACAATAACTGTCC+CGG | + | chr2_1:37484621-37484640 | None:intergenic | 35.0% |
| AATTTGCAACTGTTCCAGAT+TGG | + | chr2_1:37484846-37484865 | None:intergenic | 35.0% | |
| CAGTTCCTGTAAATCATTTG+AGG | - | chr2_1:37484882-37484901 | Msa0207070:CDS | 35.0% | |
| CCCTTTAGTCAATGTATATG+TGG | - | chr2_1:37484909-37484928 | Msa0207070:CDS | 35.0% | |
| ! | CCCACATATACATTGACTAA+AGG | + | chr2_1:37484913-37484932 | None:intergenic | 35.0% |
| TAGTCAATGTATATGTGGGT+AGG | - | chr2_1:37484914-37484933 | Msa0207070:CDS | 35.0% | |
| ! | GGTGTCCATCTTTTTATGTA+TGG | - | chr2_1:37484935-37484954 | Msa0207070:CDS | 35.0% |
| GCACCAAAATTACATCCTCA+TGG | - | chr2_1:37482045-37482064 | Msa0207070:three_prime_UTR | 40.0% | |
| AAGCCCAATTGTTCCTAAAG+TGG | - | chr2_1:37482306-37482325 | Msa0207070:CDS | 40.0% | |
| ! | CCACCACTTTAGGAACAATT+GGG | + | chr2_1:37482312-37482331 | None:intergenic | 40.0% |
| ! | TCCACCACTTTAGGAACAAT+TGG | + | chr2_1:37482313-37482332 | None:intergenic | 40.0% |
| AAACCTTCTTCCACCACTTT+AGG | + | chr2_1:37482322-37482341 | None:intergenic | 40.0% | |
| ! | CGAATGGTCTTCGATTTGAT+CGG | - | chr2_1:37482347-37482366 | Msa0207070:intron | 40.0% |
| CTAATCAACTCTTGTTCCGA+CGG | + | chr2_1:37482379-37482398 | None:intergenic | 40.0% | |
| AGTTTGGGCAATTTGTAGCT+AGG | - | chr2_1:37482413-37482432 | Msa0207070:CDS | 40.0% | |
| GTTTGGGCAATTTGTAGCTA+GGG | - | chr2_1:37482414-37482433 | Msa0207070:CDS | 40.0% | |
| ! | CTGTGCTTGATGAAGAGTTT+TGG | - | chr2_1:37482440-37482459 | Msa0207070:CDS | 40.0% |
| CCGTTAGAGAATTAACAGCA+GGG | + | chr2_1:37483436-37483455 | None:intergenic | 40.0% | |
| CCCTGCTGTTAATTCTCTAA+CGG | - | chr2_1:37483433-37483452 | Msa0207070:intron | 40.0% | |
| TCCGTTAGAGAATTAACAGC+AGG | + | chr2_1:37483437-37483456 | None:intergenic | 40.0% | |
| TCTCTAACGGAATGCTGATA+TGG | - | chr2_1:37483446-37483465 | Msa0207070:intron | 40.0% | |
| AATGCTGATATGGCAGTTAG+TGG | - | chr2_1:37483456-37483475 | Msa0207070:intron | 40.0% | |
| ATGCTGATATGGCAGTTAGT+GGG | - | chr2_1:37483457-37483476 | Msa0207070:intron | 40.0% | |
| AACACAACAACCACGATGAA+AGG | + | chr2_1:37483555-37483574 | None:intergenic | 40.0% | |
| TGACATCATCCATCTTGATC+TGG | + | chr2_1:37483636-37483655 | None:intergenic | 40.0% | |
| AGTAATCTGAATGACCCTAC+CGG | - | chr2_1:37483687-37483706 | Msa0207070:intron | 40.0% | |
| GGTTGTGGGTGTAAATCATT+TGG | - | chr2_1:37483708-37483727 | Msa0207070:intron | 40.0% | |
| TTTGCTGATCAGGTAGGAAT+CGG | - | chr2_1:37483819-37483838 | Msa0207070:intron | 40.0% | |
| CGTAAGTCGAATCATAGTCA+AGG | + | chr2_1:37484122-37484141 | None:intergenic | 40.0% | |
| ATGATTCGACTTACGGTGTT+TGG | - | chr2_1:37484127-37484146 | Msa0207070:intron | 40.0% | |
| TCTCTCCTTGCAGCAAATAT+CGG | + | chr2_1:37484239-37484258 | None:intergenic | 40.0% | |
| TACTGTTCTGTCTAGACTGA+TGG | - | chr2_1:37484292-37484311 | Msa0207070:intron | 40.0% | |
| AGAACACCACCAAGTAGATA+TGG | - | chr2_1:37484394-37484413 | Msa0207070:intron | 40.0% | |
| ! | TATGGTTTACGCCTGATTTG+TGG | - | chr2_1:37484541-37484560 | Msa0207070:CDS | 40.0% |
| TGTGGACAGAAATAATAGGC+CGG | - | chr2_1:37484599-37484618 | Msa0207070:CDS | 40.0% | |
| ! | TTACCTCAAAGCCCATCTTT+TGG | + | chr2_1:37484638-37484657 | None:intergenic | 40.0% |
| ATTTCGCCGTCAATTTCAGA+TGG | - | chr2_1:37484733-37484752 | Msa0207070:intron | 40.0% | |
| TGGTTGAAACTGCAAACTCT+CGG | - | chr2_1:37484753-37484772 | Msa0207070:intron | 40.0% | |
| TTTACAGGAACTGAAGCAGT+TGG | + | chr2_1:37484875-37484894 | None:intergenic | 40.0% | |
| CCCAATTGTTCCTAAAGTGG+TGG | - | chr2_1:37482309-37482328 | Msa0207070:CDS | 45.0% | |
| ! | GTTCCTAAAGTGGTGGAAGA+AGG | - | chr2_1:37482316-37482335 | Msa0207070:intron | 45.0% |
| GAAGAAGGTTTGAGCTCGAA+TGG | - | chr2_1:37482331-37482350 | Msa0207070:intron | 45.0% | |
| GCTAAGGGCAGAAAGTCATT+GGG | - | chr2_1:37483236-37483255 | Msa0207070:intron | 45.0% | |
| ! | TCAAAGGGGCGCAAAATGTA+AGG | + | chr2_1:37483344-37483363 | None:intergenic | 45.0% |
| ATTTACACCCACAACCGGTA+GGG | + | chr2_1:37483704-37483723 | None:intergenic | 45.0% | |
| ! | TGCAAGGAGAGACTTTTCCT+GGG | - | chr2_1:37484247-37484266 | Msa0207070:intron | 45.0% |
| GAAAGAATGAGTAGTACCCC+AGG | + | chr2_1:37484267-37484286 | None:intergenic | 45.0% | |
| TCATTTAGCAGGTGTGAGTC+AGG | - | chr2_1:37484566-37484585 | Msa0207070:CDS | 45.0% | |
| GAGTCAGGTATATGTGCATG+TGG | - | chr2_1:37484581-37484600 | Msa0207070:CDS | 45.0% | |
| GTGGACAGAAATAATAGGCC+GGG | - | chr2_1:37484600-37484619 | Msa0207070:CDS | 45.0% | |
| ! | GTACCAAAAGATGGGCTTTG+AGG | - | chr2_1:37484632-37484651 | Msa0207070:CDS | 45.0% |
| AAACTCTCGGTTGTTACCAG+AGG | - | chr2_1:37484766-37484785 | Msa0207070:intron | 45.0% | |
| CGTAGCAAGTATGTTTCCTC+TGG | + | chr2_1:37484785-37484804 | None:intergenic | 45.0% | |
| !! | TAAAGTAATTAAATTAAATT+AGG | + | chr2_1:37481878-37481897 | None:intergenic | 5.0% |
| AGTCAGCCACCACAATGGAA+TGG | + | chr2_1:37481747-37481766 | None:intergenic | 50.0% | |
| ATTCCATTGTGGTGGCTGAC+TGG | - | chr2_1:37481746-37481765 | Msa0207070:three_prime_UTR | 50.0% | |
| TGTCATCAAATCCACCACGC+CGG | - | chr2_1:37481772-37481791 | Msa0207070:three_prime_UTR | 50.0% | |
| ATGACTTCTACTTTCCGGCG+TGG | + | chr2_1:37481789-37481808 | None:intergenic | 50.0% | |
| ATTTGATCGGTTGCAGCCGT+CGG | - | chr2_1:37482360-37482379 | Msa0207070:intron | 50.0% | |
| ! | TTCTTTTGCAGACAGCAGCC+TGG | - | chr2_1:37483214-37483233 | Msa0207070:intron | 50.0% |
| ATGACTTTCTGCCCTTAGCC+AGG | + | chr2_1:37483235-37483254 | None:intergenic | 50.0% | |
| GGCTAAGGGCAGAAAGTCAT+TGG | - | chr2_1:37483235-37483254 | Msa0207070:intron | 50.0% | |
| ! | TGAATGACCCTACCGGTTGT+GGG | - | chr2_1:37483694-37483713 | Msa0207070:intron | 50.0% |
| GATTTACACCCACAACCGGT+AGG | + | chr2_1:37483705-37483724 | None:intergenic | 50.0% | |
| TGCGGTAAAAAAGCGGTGCA+AGG | - | chr2_1:37483929-37483948 | Msa0207070:intron | 50.0% | |
| AAGCGGTGCAAGGTGCAAAA+TGG | - | chr2_1:37483939-37483958 | Msa0207070:intron | 50.0% | |
| AGCGGTGCAAGGTGCAAAAT+GGG | - | chr2_1:37483940-37483959 | Msa0207070:intron | 50.0% | |
| ! | CTGCAAGGAGAGACTTTTCC+TGG | - | chr2_1:37484246-37484265 | Msa0207070:intron | 50.0% |
| ! | GCAAGGAGAGACTTTTCCTG+GGG | - | chr2_1:37484248-37484267 | Msa0207070:intron | 50.0% |
| TCCTTGTCGACGAGCCAATT+TGG | + | chr2_1:37484443-37484462 | None:intergenic | 50.0% | |
| TCACCAGTCAGCCACCACAA+TGG | + | chr2_1:37481752-37481771 | None:intergenic | 55.0% | |
| ACTTCTACTTTCCGGCGTGG+TGG | + | chr2_1:37481786-37481805 | None:intergenic | 55.0% | |
| ! | CTGAATGACCCTACCGGTTG+TGG | - | chr2_1:37483693-37483712 | Msa0207070:intron | 55.0% |
| GCTGATCAGGTAGGAATCGG+CGG | - | chr2_1:37483822-37483841 | Msa0207070:intron | 55.0% | |
| GCGGTGCAAGGTGCAAAATG+GGG | - | chr2_1:37483941-37483960 | Msa0207070:intron | 55.0% | |
| CAGCTGCGCATGCATTATCG+CGG | - | chr2_1:37483965-37483984 | Msa0207070:intron | 55.0% | |
| !! | GCCAAATTGGCTCGTCGACA+AGG | - | chr2_1:37484439-37484458 | Msa0207070:intron | 55.0% |
| TGCAGACAGCAGCCTGGCTA+AGG | - | chr2_1:37483220-37483239 | Msa0207070:intron | 60.0% | |
| GCAGACAGCAGCCTGGCTAA+GGG | - | chr2_1:37483221-37483240 | Msa0207070:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 37481733 | 37485176 | 37481733 | ID=Msa0207070;Name=Msa0207070 |
| chr2_1 | mRNA | 37481733 | 37485176 | 37481733 | ID=Msa0207070-mRNA-1;Parent=Msa0207070;Name=Msa0207070-mRNA-1;_AED=0.10;_eAED=0.10;_QI=218|1|1|1|0.87|0.77|9|359|308 |
| chr2_1 | exon | 37481733 | 37482157 | 37481733 | ID=Msa0207070-mRNA-1:exon:12130;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37482256 | 37482332 | 37482256 | ID=Msa0207070-mRNA-1:exon:12129;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37482398 | 37482551 | 37482398 | ID=Msa0207070-mRNA-1:exon:12128;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37482640 | 37482744 | 37482640 | ID=Msa0207070-mRNA-1:exon:12127;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37482923 | 37482988 | 37482923 | ID=Msa0207070-mRNA-1:exon:12126;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37483079 | 37483115 | 37483079 | ID=Msa0207070-mRNA-1:exon:12125;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37483632 | 37483684 | 37483632 | ID=Msa0207070-mRNA-1:exon:12124;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37484447 | 37484693 | 37484447 | ID=Msa0207070-mRNA-1:exon:12123;Parent=Msa0207070-mRNA-1 |
| chr2_1 | exon | 37484837 | 37485176 | 37484837 | ID=Msa0207070-mRNA-1:exon:12122;Parent=Msa0207070-mRNA-1 |
| chr2_1 | five_prime_UTR | 37484959 | 37485176 | 37484959 | ID=Msa0207070-mRNA-1:five_prime_utr;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37484837 | 37484958 | 37484837 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37484447 | 37484693 | 37484447 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37483632 | 37483684 | 37483632 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37483079 | 37483115 | 37483079 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37482923 | 37482988 | 37482923 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37482640 | 37482744 | 37482640 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37482398 | 37482551 | 37482398 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37482256 | 37482332 | 37482256 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | CDS | 37482092 | 37482157 | 37482092 | ID=Msa0207070-mRNA-1:cds;Parent=Msa0207070-mRNA-1 |
| chr2_1 | three_prime_UTR | 37481733 | 37482091 | 37481733 | ID=Msa0207070-mRNA-1:three_prime_utr;Parent=Msa0207070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
