Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246190 | XP_013463544.1 | 93.688 | 301 | 16 | 1 | 7 | 307 | 1 | 298 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246190 | A0A072V684 | 93.688 | 301 | 16 | 1 | 7 | 307 | 1 | 298 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0246190 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0207070 | Msa0246190 | 0.834356 | 3.142293e-56 | -8.615850e-47 |
| Msa0246190 | Msa0284690 | 0.900010 | 1.122531e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246190 | MtrunA17_Chr2g0300621 | 93.688 | 301 | 16 | 1 | 7 | 307 | 1 | 298 | 0.0 | 587 |
| Msa0246190 | MtrunA17_Chr4g0073171 | 27.979 | 193 | 104 | 5 | 115 | 286 | 58 | 236 | 1.71e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246190 | AT2G06025.1 | 56.856 | 299 | 115 | 3 | 7 | 305 | 1 | 285 | 4.04e-118 | 342 |
| Msa0246190 | AT2G06025.6 | 56.856 | 299 | 115 | 3 | 7 | 305 | 1 | 285 | 4.04e-118 | 342 |
| Msa0246190 | AT2G06025.4 | 56.856 | 299 | 115 | 3 | 7 | 305 | 1 | 285 | 4.04e-118 | 342 |
| Msa0246190 | AT2G06025.3 | 57.031 | 256 | 96 | 3 | 7 | 262 | 1 | 242 | 4.96e-100 | 294 |
| Msa0246190 | AT2G06025.5 | 57.031 | 256 | 96 | 3 | 7 | 262 | 1 | 242 | 4.96e-100 | 294 |
| Msa0246190 | AT2G06025.2 | 57.031 | 256 | 96 | 3 | 7 | 262 | 1 | 242 | 4.96e-100 | 294 |
| Msa0246190 | AT2G06025.7 | 54.505 | 222 | 87 | 3 | 7 | 228 | 1 | 208 | 8.69e-80 | 241 |
| Msa0246190 | AT4G28030.1 | 30.583 | 206 | 101 | 7 | 111 | 292 | 58 | 245 | 3.34e-13 | 68.9 |
Find 92 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTATCCATTCCATTT+TGG | 0.194180 | 2_2:+26783651 | Msa0246190:five_prime_UTR |
| GTTCCTAAAGTTGTGGAAAA+TGG | 0.194247 | 2_2:+26784232 | Msa0246190:CDS |
| TAAAGTAATTAAATTAAATT+AGG | 0.247120 | 2_2:-26783785 | None:intergenic |
| ATTTGAGAAGCATAAAGTTT+TGG | 0.270734 | 2_2:-26783753 | None:intergenic |
| TCCTTGTCGACGAGCCAATT+TGG | 0.274791 | 2_2:-26786355 | None:intergenic |
| AAATTTATGTGTTGCCAAAT+TGG | 0.283413 | 2_2:+26786341 | Msa0246190:CDS |
| TGAAATTCAGGTTTATGAAT+TGG | 0.285497 | 2_2:-26783891 | None:intergenic |
| TAAAGTAAGATATGAAATTC+AGG | 0.293568 | 2_2:-26783903 | None:intergenic |
| CTCATTATAAATAAAGAATA+TGG | 0.297854 | 2_2:-26787046 | None:intergenic |
| GGTCCATGAGGATGTAATTT+TGG | 0.303454 | 2_2:-26783958 | None:intergenic |
| AGAGATAATAGATTTGAGTT+TGG | 0.303539 | 2_2:+26784313 | Msa0246190:CDS |
| AAGCGGTGCAAGGTGCAAAA+TGG | 0.311231 | 2_2:+26785854 | Msa0246190:CDS |
| GCATAGTCAAATTCAATAAA+AGG | 0.321610 | 2_2:-26786919 | None:intergenic |
| TCCACAACTTTAGGAACAAT+TGG | 0.327590 | 2_2:-26784226 | None:intergenic |
| GAGATAATAGATTTGAGTTT+GGG | 0.330417 | 2_2:+26784314 | Msa0246190:CDS |
| CAAAAGGAAATTTGCTGATC+AGG | 0.341147 | 2_2:+26785724 | Msa0246190:CDS |
| TCACCGGTCAGCCACCAAAA+TGG | 0.342382 | 2_2:-26783665 | None:intergenic |
| CTGTGCTTGATGAAGAGTTT+TGG | 0.345709 | 2_2:+26784356 | Msa0246190:CDS |
| CTGTTTATGCTGCAACAAAA+AGG | 0.359050 | 2_2:-26786288 | None:intergenic |
| AGATTGAAAGAATAGGTTAA+TGG | 0.369167 | 2_2:-26783836 | None:intergenic |
| TTTGGTGCATTTGTAATTAT+GGG | 0.370191 | 2_2:-26783940 | None:intergenic |
| TATGCATACTCAAATGCATT+TGG | 0.372797 | 2_2:+26786937 | Msa0246190:three_prime_UTR |
| GTATACCTCAAATGATTTAC+AGG | 0.376199 | 2_2:-26786802 | None:intergenic |
| TTACCTCAAAGCCCATCTTT+TGG | 0.386865 | 2_2:-26786550 | None:intergenic |
| GTTCAATCCGTGACTGGAAT+GGG | 0.388919 | 2_2:-26787083 | None:intergenic |
| TGCAGACAGCAGCCTGGCTA+AGG | 0.397087 | 2_2:+26785136 | Msa0246190:intron |
| TCTCTCCTTGCAGCAAATAT+CGG | 0.397446 | 2_2:-26786151 | None:intergenic |
| GGCTAAGGGCAGAAAGTCAT+TGG | 0.397544 | 2_2:+26785151 | Msa0246190:CDS |
| ATCTCTAACCAACTCTTGTT+CGG | 0.402955 | 2_2:-26784296 | None:intergenic |
| CAGTTCCTGTAAATCATTTG+AGG | 0.405332 | 2_2:+26786797 | Msa0246190:three_prime_UTR |
| AGCGGTGCAAGGTGCAAAAT+GGG | 0.411100 | 2_2:+26785855 | Msa0246190:CDS |
| CCACATATACATTGACTAAA+GGG | 0.413073 | 2_2:-26786824 | None:intergenic |
| TAATGAAACAGAACAAGAAC+AGG | 0.417724 | 2_2:+26786973 | Msa0246190:three_prime_UTR |
| CCCTTTAGTCAATGTATATG+TGG | 0.424184 | 2_2:+26786824 | Msa0246190:three_prime_UTR |
| CATATTCTTTATTTATAATG+AGG | 0.433865 | 2_2:+26787047 | Msa0246190:three_prime_UTR |
| TCATTTAGCAGGTGTGAGTC+AGG | 0.439184 | 2_2:+26786481 | Msa0246190:intron |
| TAGTTAATTATGATCCAATC+TGG | 0.442431 | 2_2:+26786744 | Msa0246190:three_prime_UTR |
| ATGACTTTCTGCCCTTAGCC+AGG | 0.443627 | 2_2:-26785148 | None:intergenic |
| ACTTTAACAACAACAACAAA+AGG | 0.450585 | 2_2:+26783802 | Msa0246190:five_prime_UTR |
| AGAACACCACCAAGTAGATA+TGG | 0.454568 | 2_2:+26786309 | Msa0246190:CDS |
| AATTTGCAACTGTTCCAGAT+TGG | 0.457980 | 2_2:-26786758 | None:intergenic |
| GTTGAAAATGCAAAATCTAA+TGG | 0.457985 | 2_2:+26786405 | Msa0246190:CDS |
| CCACAACTTTAGGAACAATT+GGG | 0.463212 | 2_2:-26784225 | None:intergenic |
| ACAGTTATTGTACCAAAAGA+TGG | 0.467482 | 2_2:+26786538 | Msa0246190:CDS |
| GTACCAAAAGATGGGCTTTG+AGG | 0.468548 | 2_2:+26786547 | Msa0246190:CDS |
| TTCATCTAGATTGAAAGAAT+AGG | 0.471254 | 2_2:-26783843 | None:intergenic |
| AGTTTGGGCAATTTGTTGCT+AGG | 0.471404 | 2_2:+26784329 | Msa0246190:CDS |
| CCCACATATACATTGACTAA+AGG | 0.483225 | 2_2:-26786825 | None:intergenic |
| CCCAATTGTTCCTAAAGTTG+TGG | 0.483284 | 2_2:+26784225 | Msa0246190:CDS |
| TCATGTTTATCAGGTGAGAA+AGG | 0.487782 | 2_2:+26786067 | Msa0246190:intron |
| TGAATTGGAATAGTTGACAT+AGG | 0.492624 | 2_2:-26783876 | None:intergenic |
| CGTAGCAAGTATGTTTCCTC+TGG | 0.493901 | 2_2:-26786697 | None:intergenic |
| GATATATTGATATCTACAAA+AGG | 0.499748 | 2_2:+26785708 | Msa0246190:intron |
| AGTTCAATCCGTGACTGGAA+TGG | 0.504230 | 2_2:-26787084 | None:intergenic |
| CGAATGGTCTTCGATTTGAT+CGG | 0.516980 | 2_2:+26784263 | Msa0246190:CDS |
| TGCATGTGGACAGAAATAAT+AGG | 0.521792 | 2_2:+26786510 | Msa0246190:CDS |
| GCCAAATTGGCTCGTCGACA+AGG | 0.522479 | 2_2:+26786354 | Msa0246190:CDS |
| GCAATGTAACCATATCTACT+TGG | 0.536879 | 2_2:-26786318 | None:intergenic |
| GCACCAAAATTACATCCTCA+TGG | 0.537776 | 2_2:+26783955 | Msa0246190:CDS |
| TATGAAGAATAAGAAGATGA+AGG | 0.539557 | 2_2:+26784177 | Msa0246190:CDS |
| GTTTGGGCAATTTGTTGCTA+GGG | 0.542877 | 2_2:+26784330 | Msa0246190:CDS |
| GTGCATTTGTAATTATGGGT+TGG | 0.548458 | 2_2:-26783936 | None:intergenic |
| GCTAAGGGCAGAAAGTCATT+GGG | 0.553474 | 2_2:+26785152 | Msa0246190:CDS |
| CAGTTATTGTACCAAAAGAT+GGG | 0.555181 | 2_2:+26786539 | Msa0246190:CDS |
| TTTACAGGAACTGAAGCAGT+TGG | 0.562202 | 2_2:-26786787 | None:intergenic |
| GTGGACAGAAATAATAGGCC+GGG | 0.563824 | 2_2:+26786515 | Msa0246190:CDS |
| GCAGCCGTCCGAACAAGAGT+TGG | 0.570420 | 2_2:+26784288 | Msa0246190:CDS |
| TGGTTGAAACTGCAAACTCT+CGG | 0.577388 | 2_2:+26786668 | Msa0246190:CDS |
| CCTTTAGTCAATGTATATGT+GGG | 0.578134 | 2_2:+26786825 | Msa0246190:three_prime_UTR |
| GAAGAATAAGAAGATGAAGG+AGG | 0.579221 | 2_2:+26784180 | Msa0246190:CDS |
| GCAGACAGCAGCCTGGCTAA+GGG | 0.579446 | 2_2:+26785137 | Msa0246190:intron |
| TGTGGACAGAAATAATAGGC+CGG | 0.580627 | 2_2:+26786514 | Msa0246190:CDS |
| GGGAGAATCAAACATATGAA+AGG | 0.580964 | 2_2:+26785172 | Msa0246190:CDS |
| AATATCCGATATTTGCTGCA+AGG | 0.586800 | 2_2:+26786146 | Msa0246190:CDS |
| ACTTCTACTTTCCGGCGTGG+TGG | 0.590556 | 2_2:-26783699 | None:intergenic |
| CTAACCAACTCTTGTTCGGA+CGG | 0.599882 | 2_2:-26784292 | None:intergenic |
| GGTCAGCCACCAAAATGGAA+TGG | 0.602256 | 2_2:-26783660 | None:intergenic |
| TAGTCAATGTATATGTGGGT+AGG | 0.611018 | 2_2:+26786829 | Msa0246190:three_prime_UTR |
| GAAAATGGTTTGAGCTCGAA+TGG | 0.616730 | 2_2:+26784247 | Msa0246190:CDS |
| GGTGGATTTGATGACATCAC+CGG | 0.620914 | 2_2:-26783681 | None:intergenic |
| TTCAATCCGTGACTGGAATG+GGG | 0.640753 | 2_2:-26787082 | None:intergenic |
| TAGTCAAATTCAATAAAAGG+AGG | 0.655540 | 2_2:-26786916 | None:intergenic |
| ATGACTTCTACTTTCCGGCG+TGG | 0.658502 | 2_2:-26783702 | None:intergenic |
| CAGCTGCGCATGCATTATCG+CGG | 0.671835 | 2_2:+26785880 | Msa0246190:CDS |
| AAACTCTCGGTTGTTACCAG+AGG | 0.674396 | 2_2:+26786681 | Msa0246190:CDS |
| ATGTAACCATATCTACTTGG+TGG | 0.675557 | 2_2:-26786315 | None:intergenic |
| GAGTCAGGTATATGTGCATG+TGG | 0.676318 | 2_2:+26786496 | Msa0246190:CDS |
| GCGGTGCAAGGTGCAAAATG+GGG | 0.677118 | 2_2:+26785856 | Msa0246190:CDS |
| TATTGTTTAGGAATTTAATG+CGG | 0.686710 | 2_2:+26785826 | Msa0246190:intron |
| AGAAACTTACATGGTCCATG+AGG | 0.687429 | 2_2:-26783970 | None:intergenic |
| AATGAAACAGAACAAGAACA+GGG | 0.696176 | 2_2:+26786974 | Msa0246190:three_prime_UTR |
| TGTCATCAAATCCACCACGC+CGG | 0.715726 | 2_2:+26783688 | Msa0246190:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTTGATATGAAT+AGG | + | chr2_2:26784110-26784129 | Msa0246190:intron | 10.0% |
| !! | AAAAAATAAACAAATTCAAA+CGG | - | chr2_2:26784413-26784432 | None:intergenic | 10.0% |
| !! | AAAAATAAACAAATTCAAAC+GGG | - | chr2_2:26784412-26784431 | None:intergenic | 15.0% |
| !! | AAAACATTTAATGAAATGAA+GGG | - | chr2_2:26785291-26785310 | None:intergenic | 15.0% |
| !! | AAAAACATTTAATGAAATGA+AGG | - | chr2_2:26785292-26785311 | None:intergenic | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | - | chr2_2:26785400-26785419 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | - | chr2_2:26785401-26785420 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTTCATACATA+AGG | + | chr2_2:26785415-26785434 | Msa0246190:intron | 15.0% |
| !!! | TTTTCTAAATAGTAGAATAT+AGG | + | chr2_2:26785580-26785599 | Msa0246190:intron | 15.0% |
| !! | CTCATTATAAATAAAGAATA+TGG | - | chr2_2:26787049-26787068 | None:intergenic | 15.0% |
| !!! | CATATTCTTTATTTATAATG+AGG | + | chr2_2:26787047-26787066 | Msa0246190:three_prime_UTR | 15.0% |
| !! | TAAAGTAAGATATGAAATTC+AGG | - | chr2_2:26783906-26783925 | None:intergenic | 20.0% |
| !! | TTAAATAGAAGAAACTTACA+TGG | - | chr2_2:26783982-26784001 | None:intergenic | 20.0% |
| !! | ATAAATCAGTCAATTCAAAT+GGG | + | chr2_2:26784603-26784622 | Msa0246190:intron | 20.0% |
| !!! | TTTGAAATTGAAAATTCTCA+AGG | + | chr2_2:26784688-26784707 | Msa0246190:intron | 20.0% |
| !! | TTCATGAAATTGTAGAAATT+TGG | - | chr2_2:26784879-26784898 | None:intergenic | 20.0% |
| !! | TACAATTTCATGAACTAAAA+TGG | + | chr2_2:26784885-26784904 | Msa0246190:intron | 20.0% |
| !! | ACAAATGAATGATAAATGAT+TGG | - | chr2_2:26785046-26785065 | None:intergenic | 20.0% |
| !! | ATTAACAATAGGTAAGAATT+TGG | + | chr2_2:26785652-26785671 | Msa0246190:intron | 20.0% |
| !! | TTAACAATAGGTAAGAATTT+GGG | + | chr2_2:26785653-26785672 | Msa0246190:intron | 20.0% |
| !! | GATATATTGATATCTACAAA+AGG | + | chr2_2:26785708-26785727 | Msa0246190:intron | 20.0% |
| !! | CATTAAATTCCTAAACAATA+GGG | - | chr2_2:26785826-26785845 | None:intergenic | 20.0% |
| !! | TATTGTTTAGGAATTTAATG+CGG | + | chr2_2:26785826-26785845 | Msa0246190:intron | 20.0% |
| !! | TGATCTAGTTAAAAAAATTC+AGG | + | chr2_2:26785926-26785945 | Msa0246190:intron | 20.0% |
| !! | ATACCACAAAAATTACAAAA+TGG | - | chr2_2:26786883-26786902 | None:intergenic | 20.0% |
| !!! | TTTGAGAAGCATAAAGTTTT+GGG | - | chr2_2:26783755-26783774 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATAAAGTTT+TGG | - | chr2_2:26783756-26783775 | None:intergenic | 25.0% |
| ! | ACTTTAACAACAACAACAAA+AGG | + | chr2_2:26783802-26783821 | Msa0246190:five_prime_UTR | 25.0% |
| ! | AGATTGAAAGAATAGGTTAA+TGG | - | chr2_2:26783839-26783858 | None:intergenic | 25.0% |
| ! | TTCATCTAGATTGAAAGAAT+AGG | - | chr2_2:26783846-26783865 | None:intergenic | 25.0% |
| !! | TGAAATTCAGGTTTATGAAT+TGG | - | chr2_2:26783894-26783913 | None:intergenic | 25.0% |
| !! | TTTGGTGCATTTGTAATTAT+GGG | - | chr2_2:26783943-26783962 | None:intergenic | 25.0% |
| !!! | TTTTGGTGCATTTGTAATTA+TGG | - | chr2_2:26783944-26783963 | None:intergenic | 25.0% |
| !! | TTTTGATATGAATAGGTCTA+TGG | + | chr2_2:26784117-26784136 | Msa0246190:intron | 25.0% |
| ! | TATGAAGAATAAGAAGATGA+AGG | + | chr2_2:26784177-26784196 | Msa0246190:CDS | 25.0% |
| !! | AGAGATAATAGATTTGAGTT+TGG | + | chr2_2:26784313-26784332 | Msa0246190:CDS | 25.0% |
| !! | GAGATAATAGATTTGAGTTT+GGG | + | chr2_2:26784314-26784333 | Msa0246190:CDS | 25.0% |
| ! | CATAAATCAGTCAATTCAAA+TGG | + | chr2_2:26784602-26784621 | Msa0246190:intron | 25.0% |
| ! | CATACAATTTCATACACTAA+GGG | - | chr2_2:26784629-26784648 | None:intergenic | 25.0% |
| ! | AATAAAGCTTAACCTAATGT+TGG | + | chr2_2:26784986-26785005 | Msa0246190:intron | 25.0% |
| !! | TTTTCTTAGATTCCAACATT+AGG | - | chr2_2:26785001-26785020 | None:intergenic | 25.0% |
| !! | ATCATTCATTTGTACTTTTG+TGG | + | chr2_2:26785053-26785072 | Msa0246190:intron | 25.0% |
| !!! | AATCTCCAATGTTTTTTCAT+AGG | + | chr2_2:26785216-26785235 | Msa0246190:intron | 25.0% |
| !!! | ATCTCCAATGTTTTTTCATA+GGG | + | chr2_2:26785217-26785236 | Msa0246190:intron | 25.0% |
| ! | TTAACCCTATGAAAAAACAT+TGG | - | chr2_2:26785224-26785243 | None:intergenic | 25.0% |
| !!! | CATTTGACTTGATTAACAAT+AGG | + | chr2_2:26785641-26785660 | Msa0246190:intron | 25.0% |
| ! | GCATTAAATTCCTAAACAAT+AGG | - | chr2_2:26785827-26785846 | None:intergenic | 25.0% |
| ! | AATTTAATGCGGTAAAAAAG+CGG | + | chr2_2:26785837-26785856 | Msa0246190:CDS | 25.0% |
| !!! | TCGATAATAAAAAGTGTTGT+AGG | + | chr2_2:26786110-26786129 | Msa0246190:CDS | 25.0% |
| ! | AAATTTATGTGTTGCCAAAT+TGG | + | chr2_2:26786341-26786360 | Msa0246190:CDS | 25.0% |
| ! | GTTGAAAATGCAAAATCTAA+TGG | + | chr2_2:26786405-26786424 | Msa0246190:CDS | 25.0% |
| !!! | GTTAAGTTGAAGTAACTTTA+TGG | + | chr2_2:26786438-26786457 | Msa0246190:intron | 25.0% |
| ! | CAACAATCTATAACAAAAAC+TGG | - | chr2_2:26786601-26786620 | None:intergenic | 25.0% |
| ! | ACATGTGAAATCAATAACTA+TGG | + | chr2_2:26786623-26786642 | Msa0246190:intron | 25.0% |
| ! | TAGTTAATTATGATCCAATC+TGG | + | chr2_2:26786744-26786763 | Msa0246190:three_prime_UTR | 25.0% |
| ! | TAGTCAAATTCAATAAAAGG+AGG | - | chr2_2:26786919-26786938 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATTCAATAAA+AGG | - | chr2_2:26786922-26786941 | None:intergenic | 25.0% |
| ! | GCATATTATCCATTCCATTT+TGG | + | chr2_2:26783651-26783670 | Msa0246190:five_prime_UTR | 30.0% |
| ! | TATTATCCATTCCATTTTGG+TGG | + | chr2_2:26783654-26783673 | Msa0246190:five_prime_UTR | 30.0% |
| !! | TTTTGATGACTTCTACTTTC+CGG | - | chr2_2:26783710-26783729 | None:intergenic | 30.0% |
| TGAATTGGAATAGTTGACAT+AGG | - | chr2_2:26783879-26783898 | None:intergenic | 30.0% | |
| ! | AAACCATTTTCCACAACTTT+AGG | - | chr2_2:26784238-26784257 | None:intergenic | 30.0% |
| !! | TTGGGTATGTTTTAAACTGT+TGG | + | chr2_2:26784375-26784394 | Msa0246190:intron | 30.0% |
| CCATACAATTTCATACACTA+AGG | - | chr2_2:26784630-26784649 | None:intergenic | 30.0% | |
| CCTTAGTGTATGAAATTGTA+TGG | + | chr2_2:26784627-26784646 | Msa0246190:intron | 30.0% | |
| ! | CAATTTATTGTCTGACTTGT+AGG | + | chr2_2:26784731-26784750 | Msa0246190:intron | 30.0% |
| !! | ACTTGTAGGATTAGTTGATT+TGG | + | chr2_2:26784745-26784764 | Msa0246190:intron | 30.0% |
| ! | ATTCACTTTGTCTGTCTTTT+AGG | + | chr2_2:26784910-26784929 | Msa0246190:intron | 30.0% |
| TGAAGGGACTATAATTCAAA+GGG | - | chr2_2:26785275-26785294 | None:intergenic | 30.0% | |
| ATGAAGGGACTATAATTCAA+AGG | - | chr2_2:26785276-26785295 | None:intergenic | 30.0% | |
| GATTATAAACCAGATCAAGA+TGG | + | chr2_2:26785540-26785559 | Msa0246190:intron | 30.0% | |
| AACAAGAATCCCTATTGTTT+AGG | + | chr2_2:26785814-26785833 | Msa0246190:intron | 30.0% | |
| TGTTTGGATTCATGTTTATC+AGG | + | chr2_2:26786058-26786077 | Msa0246190:intron | 30.0% | |
| ACAGTTATTGTACCAAAAGA+TGG | + | chr2_2:26786538-26786557 | Msa0246190:CDS | 30.0% | |
| CAGTTATTGTACCAAAAGAT+GGG | + | chr2_2:26786539-26786558 | Msa0246190:CDS | 30.0% | |
| !! | CTTTGAGGTAATGTAATTGT+TGG | + | chr2_2:26786562-26786581 | Msa0246190:intron | 30.0% |
| ! | TTTCAACCATCTGAAATTGA+CGG | - | chr2_2:26786657-26786676 | None:intergenic | 30.0% |
| GTATACCTCAAATGATTTAC+AGG | - | chr2_2:26786805-26786824 | None:intergenic | 30.0% | |
| ! | CCACATATACATTGACTAAA+GGG | - | chr2_2:26786827-26786846 | None:intergenic | 30.0% |
| CCTTTAGTCAATGTATATGT+GGG | + | chr2_2:26786825-26786844 | Msa0246190:three_prime_UTR | 30.0% | |
| GACATCCATACATAAAAAGA+TGG | - | chr2_2:26786858-26786877 | None:intergenic | 30.0% | |
| CCACAAAAATTACAAAATGG+AGG | - | chr2_2:26786880-26786899 | None:intergenic | 30.0% | |
| ! | CCTCCATTTTGTAATTTTTG+TGG | + | chr2_2:26786877-26786896 | Msa0246190:three_prime_UTR | 30.0% |
| TATGCATACTCAAATGCATT+TGG | + | chr2_2:26786937-26786956 | Msa0246190:three_prime_UTR | 30.0% | |
| TAATGAAACAGAACAAGAAC+AGG | + | chr2_2:26786973-26786992 | Msa0246190:three_prime_UTR | 30.0% | |
| AATGAAACAGAACAAGAACA+GGG | + | chr2_2:26786974-26786993 | Msa0246190:three_prime_UTR | 30.0% | |
| !!! | ATAAAGTTTTGGGAGGAACA+TGG | - | chr2_2:26783745-26783764 | None:intergenic | 35.0% |
| GTGCATTTGTAATTATGGGT+TGG | - | chr2_2:26783939-26783958 | None:intergenic | 35.0% | |
| GAAGAATAAGAAGATGAAGG+AGG | + | chr2_2:26784180-26784199 | Msa0246190:CDS | 35.0% | |
| ! | CCACAACTTTAGGAACAATT+GGG | - | chr2_2:26784228-26784247 | None:intergenic | 35.0% |
| ! | TCCACAACTTTAGGAACAAT+TGG | - | chr2_2:26784229-26784248 | None:intergenic | 35.0% |
| GTTCCTAAAGTTGTGGAAAA+TGG | + | chr2_2:26784232-26784251 | Msa0246190:CDS | 35.0% | |
| ATCTCTAACCAACTCTTGTT+CGG | - | chr2_2:26784299-26784318 | None:intergenic | 35.0% | |
| ! | TGTGCTTGATGAAGAGTTTT+GGG | + | chr2_2:26784357-26784376 | Msa0246190:CDS | 35.0% |
| GGGAGAATCAAACATATGAA+AGG | + | chr2_2:26785172-26785191 | Msa0246190:CDS | 35.0% | |
| GATCACAGAGATAAAATGTG+AGG | - | chr2_2:26785320-26785339 | None:intergenic | 35.0% | |
| CCGTTATAGAATTAACAGCA+GGG | - | chr2_2:26785352-26785371 | None:intergenic | 35.0% | |
| CCCTGCTGTTAATTCTATAA+CGG | + | chr2_2:26785349-26785368 | Msa0246190:intron | 35.0% | |
| TCCGTTATAGAATTAACAGC+AGG | - | chr2_2:26785353-26785372 | None:intergenic | 35.0% | |
| ! | TCTATAACGGAATGCTGATA+TGG | + | chr2_2:26785362-26785381 | Msa0246190:intron | 35.0% |
| !! | TAGTGGGTCCCAATTATTTT+AGG | + | chr2_2:26785389-26785408 | Msa0246190:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+GGG | + | chr2_2:26785390-26785409 | Msa0246190:intron | 35.0% |
| AAAATGTGTTCCTTTCATCG+TGG | + | chr2_2:26785458-26785477 | Msa0246190:intron | 35.0% | |
| AACTTGTGTTGAGCATATTG+TGG | + | chr2_2:26785500-26785519 | Msa0246190:intron | 35.0% | |
| AAATGATTTACACCCACAAC+CGG | - | chr2_2:26785626-26785645 | None:intergenic | 35.0% | |
| !! | CAAAAGGAAATTTGCTGATC+AGG | + | chr2_2:26785724-26785743 | Msa0246190:CDS | 35.0% |
| CCAGTGTATAGTACTAAGTA+AGG | - | chr2_2:26785773-26785792 | None:intergenic | 35.0% | |
| CCTTACTTAGTACTATACAC+TGG | + | chr2_2:26785770-26785789 | Msa0246190:intron | 35.0% | |
| CTTGACTATGATTCGACTTA+CGG | + | chr2_2:26786035-26786054 | Msa0246190:intron | 35.0% | |
| TCATGTTTATCAGGTGAGAA+AGG | + | chr2_2:26786067-26786086 | Msa0246190:intron | 35.0% | |
| ! | AATATCCGATATTTGCTGCA+AGG | + | chr2_2:26786146-26786165 | Msa0246190:CDS | 35.0% |
| AGTCATCATATCATTTCTGC+AGG | + | chr2_2:26786251-26786270 | Msa0246190:intron | 35.0% | |
| CTGTTTATGCTGCAACAAAA+AGG | - | chr2_2:26786291-26786310 | None:intergenic | 35.0% | |
| ATGTAACCATATCTACTTGG+TGG | - | chr2_2:26786318-26786337 | None:intergenic | 35.0% | |
| GCAATGTAACCATATCTACT+TGG | - | chr2_2:26786321-26786340 | None:intergenic | 35.0% | |
| ! | TATGGTTTACACCTGATTTG+TGG | + | chr2_2:26786456-26786475 | Msa0246190:intron | 35.0% |
| GCTAAATGAATCCACAAATC+AGG | - | chr2_2:26786470-26786489 | None:intergenic | 35.0% | |
| GATTTGTGGATTCATTTAGC+AGG | + | chr2_2:26786470-26786489 | Msa0246190:intron | 35.0% | |
| TGCATGTGGACAGAAATAAT+AGG | + | chr2_2:26786510-26786529 | Msa0246190:CDS | 35.0% | |
| ! | TTTTGGTACAATAACTGTCC+CGG | - | chr2_2:26786536-26786555 | None:intergenic | 35.0% |
| AATTTGCAACTGTTCCAGAT+TGG | - | chr2_2:26786761-26786780 | None:intergenic | 35.0% | |
| CAGTTCCTGTAAATCATTTG+AGG | + | chr2_2:26786797-26786816 | Msa0246190:three_prime_UTR | 35.0% | |
| CCCTTTAGTCAATGTATATG+TGG | + | chr2_2:26786824-26786843 | Msa0246190:three_prime_UTR | 35.0% | |
| ! | CCCACATATACATTGACTAA+AGG | - | chr2_2:26786828-26786847 | None:intergenic | 35.0% |
| TAGTCAATGTATATGTGGGT+AGG | + | chr2_2:26786829-26786848 | Msa0246190:three_prime_UTR | 35.0% | |
| ! | GGTGTCCATCTTTTTATGTA+TGG | + | chr2_2:26786850-26786869 | Msa0246190:three_prime_UTR | 35.0% |
| !!! | GAGAAGCATAAAGTTTTGGG+AGG | - | chr2_2:26783752-26783771 | None:intergenic | 40.0% |
| GCACCAAAATTACATCCTCA+TGG | + | chr2_2:26783955-26783974 | Msa0246190:CDS | 40.0% | |
| ! | GGTCCATGAGGATGTAATTT+TGG | - | chr2_2:26783961-26783980 | None:intergenic | 40.0% |
| AGAAACTTACATGGTCCATG+AGG | - | chr2_2:26783973-26783992 | None:intergenic | 40.0% | |
| CCCAATTGTTCCTAAAGTTG+TGG | + | chr2_2:26784225-26784244 | Msa0246190:CDS | 40.0% | |
| GAAAATGGTTTGAGCTCGAA+TGG | + | chr2_2:26784247-26784266 | Msa0246190:CDS | 40.0% | |
| ! | CGAATGGTCTTCGATTTGAT+CGG | + | chr2_2:26784263-26784282 | Msa0246190:CDS | 40.0% |
| !! | AGTTTGGGCAATTTGTTGCT+AGG | + | chr2_2:26784329-26784348 | Msa0246190:CDS | 40.0% |
| !! | GTTTGGGCAATTTGTTGCTA+GGG | + | chr2_2:26784330-26784349 | Msa0246190:CDS | 40.0% |
| ! | CTGTGCTTGATGAAGAGTTT+TGG | + | chr2_2:26784356-26784375 | Msa0246190:CDS | 40.0% |
| TCAAAGGGACGCAAAATGTA+AGG | - | chr2_2:26785260-26785279 | None:intergenic | 40.0% | |
| AATGCTGATATGGCAGTTAG+TGG | + | chr2_2:26785372-26785391 | Msa0246190:intron | 40.0% | |
| ATGCTGATATGGCAGTTAGT+GGG | + | chr2_2:26785373-26785392 | Msa0246190:intron | 40.0% | |
| AACACAACAACCACGATGAA+AGG | - | chr2_2:26785471-26785490 | None:intergenic | 40.0% | |
| TGACATCATCCATCTTGATC+TGG | - | chr2_2:26785552-26785571 | None:intergenic | 40.0% | |
| AGTAATCTGAATGACCCTAC+CGG | + | chr2_2:26785604-26785623 | Msa0246190:intron | 40.0% | |
| !! | AGGAAATTTGCTGATCAGGT+AGG | + | chr2_2:26785728-26785747 | Msa0246190:intron | 40.0% |
| TTTGCTGATCAGGTAGGAAT+CGG | + | chr2_2:26785734-26785753 | Msa0246190:intron | 40.0% | |
| CGTAAGTCGAATCATAGTCA+AGG | - | chr2_2:26786037-26786056 | None:intergenic | 40.0% | |
| ATGATTCGACTTACGGTGTT+TGG | + | chr2_2:26786042-26786061 | Msa0246190:intron | 40.0% | |
| TCTCTCCTTGCAGCAAATAT+CGG | - | chr2_2:26786154-26786173 | None:intergenic | 40.0% | |
| TACTGTTCTGTCTAGACTGA+TGG | + | chr2_2:26786207-26786226 | Msa0246190:intron | 40.0% | |
| AGAACACCACCAAGTAGATA+TGG | + | chr2_2:26786309-26786328 | Msa0246190:CDS | 40.0% | |
| TGTGGACAGAAATAATAGGC+CGG | + | chr2_2:26786514-26786533 | Msa0246190:CDS | 40.0% | |
| ! | TTACCTCAAAGCCCATCTTT+TGG | - | chr2_2:26786553-26786572 | None:intergenic | 40.0% |
| ATTTCGCCGTCAATTTCAGA+TGG | + | chr2_2:26786648-26786667 | Msa0246190:intron | 40.0% | |
| TGGTTGAAACTGCAAACTCT+CGG | + | chr2_2:26786668-26786687 | Msa0246190:CDS | 40.0% | |
| TTTACAGGAACTGAAGCAGT+TGG | - | chr2_2:26786790-26786809 | None:intergenic | 40.0% | |
| !! | ATTCCATTTTGGTGGCTGAC+CGG | + | chr2_2:26783662-26783681 | Msa0246190:five_prime_UTR | 45.0% |
| ! | GGTGGATTTGATGACATCAC+CGG | - | chr2_2:26783684-26783703 | None:intergenic | 45.0% |
| CTAACCAACTCTTGTTCGGA+CGG | - | chr2_2:26784295-26784314 | None:intergenic | 45.0% | |
| GCTAAGGGCAGAAAGTCATT+GGG | + | chr2_2:26785152-26785171 | Msa0246190:CDS | 45.0% | |
| ATTTACACCCACAACCGGTA+GGG | - | chr2_2:26785621-26785640 | None:intergenic | 45.0% | |
| ! | TGCAAGGAGAGACTTTTCCT+GGG | + | chr2_2:26786162-26786181 | Msa0246190:CDS | 45.0% |
| GAAAGAATGAGTAGTACCCC+AGG | - | chr2_2:26786182-26786201 | None:intergenic | 45.0% | |
| TCATTTAGCAGGTGTGAGTC+AGG | + | chr2_2:26786481-26786500 | Msa0246190:intron | 45.0% | |
| GAGTCAGGTATATGTGCATG+TGG | + | chr2_2:26786496-26786515 | Msa0246190:CDS | 45.0% | |
| GTGGACAGAAATAATAGGCC+GGG | + | chr2_2:26786515-26786534 | Msa0246190:CDS | 45.0% | |
| ! | GTACCAAAAGATGGGCTTTG+AGG | + | chr2_2:26786547-26786566 | Msa0246190:CDS | 45.0% |
| AAACTCTCGGTTGTTACCAG+AGG | + | chr2_2:26786681-26786700 | Msa0246190:CDS | 45.0% | |
| CGTAGCAAGTATGTTTCCTC+TGG | - | chr2_2:26786700-26786719 | None:intergenic | 45.0% | |
| !! | TAAAGTAATTAAATTAAATT+AGG | - | chr2_2:26783788-26783807 | None:intergenic | 5.0% |
| GGTCAGCCACCAAAATGGAA+TGG | - | chr2_2:26783663-26783682 | None:intergenic | 50.0% | |
| TGTCATCAAATCCACCACGC+CGG | + | chr2_2:26783688-26783707 | Msa0246190:five_prime_UTR | 50.0% | |
| ATGACTTCTACTTTCCGGCG+TGG | - | chr2_2:26783705-26783724 | None:intergenic | 50.0% | |
| ! | TTCTTTTGCAGACAGCAGCC+TGG | + | chr2_2:26785130-26785149 | Msa0246190:intron | 50.0% |
| ATGACTTTCTGCCCTTAGCC+AGG | - | chr2_2:26785151-26785170 | None:intergenic | 50.0% | |
| GGCTAAGGGCAGAAAGTCAT+TGG | + | chr2_2:26785151-26785170 | Msa0246190:CDS | 50.0% | |
| ! | TGAATGACCCTACCGGTTGT+GGG | + | chr2_2:26785611-26785630 | Msa0246190:intron | 50.0% |
| GATTTACACCCACAACCGGT+AGG | - | chr2_2:26785622-26785641 | None:intergenic | 50.0% | |
| TGCGGTAAAAAAGCGGTGCA+AGG | + | chr2_2:26785844-26785863 | Msa0246190:CDS | 50.0% | |
| AAGCGGTGCAAGGTGCAAAA+TGG | + | chr2_2:26785854-26785873 | Msa0246190:CDS | 50.0% | |
| AGCGGTGCAAGGTGCAAAAT+GGG | + | chr2_2:26785855-26785874 | Msa0246190:CDS | 50.0% | |
| ! | CTGCAAGGAGAGACTTTTCC+TGG | + | chr2_2:26786161-26786180 | Msa0246190:CDS | 50.0% |
| ! | GCAAGGAGAGACTTTTCCTG+GGG | + | chr2_2:26786163-26786182 | Msa0246190:CDS | 50.0% |
| TCCTTGTCGACGAGCCAATT+TGG | - | chr2_2:26786358-26786377 | None:intergenic | 50.0% | |
| TCACCGGTCAGCCACCAAAA+TGG | - | chr2_2:26783668-26783687 | None:intergenic | 55.0% | |
| ACTTCTACTTTCCGGCGTGG+TGG | - | chr2_2:26783702-26783721 | None:intergenic | 55.0% | |
| ! | CTGAATGACCCTACCGGTTG+TGG | + | chr2_2:26785610-26785629 | Msa0246190:intron | 55.0% |
| GCTGATCAGGTAGGAATCGG+CGG | + | chr2_2:26785737-26785756 | Msa0246190:intron | 55.0% | |
| GCGGTGCAAGGTGCAAAATG+GGG | + | chr2_2:26785856-26785875 | Msa0246190:CDS | 55.0% | |
| CAGCTGCGCATGCATTATCG+CGG | + | chr2_2:26785880-26785899 | Msa0246190:CDS | 55.0% | |
| !! | GCCAAATTGGCTCGTCGACA+AGG | + | chr2_2:26786354-26786373 | Msa0246190:CDS | 55.0% |
| GCAGCCGTCCGAACAAGAGT+TGG | + | chr2_2:26784288-26784307 | Msa0246190:CDS | 60.0% | |
| TGCAGACAGCAGCCTGGCTA+AGG | + | chr2_2:26785136-26785155 | Msa0246190:intron | 60.0% | |
| GCAGACAGCAGCCTGGCTAA+GGG | + | chr2_2:26785137-26785156 | Msa0246190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 26783645 | 26787091 | 26783645 | ID=Msa0246190;Name=Msa0246190 |
| chr2_2 | mRNA | 26783645 | 26787091 | 26783645 | ID=Msa0246190-mRNA-1;Parent=Msa0246190;Name=Msa0246190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=216|1|1|1|1|0.88|9|359|308 |
| chr2_2 | exon | 26783645 | 26783982 | 26783645 | ID=Msa0246190-mRNA-1:exon:9832;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26784132 | 26784378 | 26784132 | ID=Msa0246190-mRNA-1:exon:9833;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26785141 | 26785193 | 26785141 | ID=Msa0246190-mRNA-1:exon:9834;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26785709 | 26785745 | 26785709 | ID=Msa0246190-mRNA-1:exon:9835;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26785836 | 26785901 | 26785836 | ID=Msa0246190-mRNA-1:exon:9836;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26786080 | 26786184 | 26786080 | ID=Msa0246190-mRNA-1:exon:9837;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26786273 | 26786426 | 26786273 | ID=Msa0246190-mRNA-1:exon:9838;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26786492 | 26786568 | 26786492 | ID=Msa0246190-mRNA-1:exon:9839;Parent=Msa0246190-mRNA-1 |
| chr2_2 | exon | 26786667 | 26787091 | 26786667 | ID=Msa0246190-mRNA-1:exon:9840;Parent=Msa0246190-mRNA-1 |
| chr2_2 | five_prime_UTR | 26783645 | 26783860 | 26783645 | ID=Msa0246190-mRNA-1:five_prime_utr;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26783861 | 26783982 | 26783861 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26784132 | 26784378 | 26784132 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26785141 | 26785193 | 26785141 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26785709 | 26785745 | 26785709 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26785836 | 26785901 | 26785836 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26786080 | 26786184 | 26786080 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26786273 | 26786426 | 26786273 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26786492 | 26786568 | 26786492 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | CDS | 26786667 | 26786732 | 26786667 | ID=Msa0246190-mRNA-1:cds;Parent=Msa0246190-mRNA-1 |
| chr2_2 | three_prime_UTR | 26786733 | 26787091 | 26786733 | ID=Msa0246190-mRNA-1:three_prime_utr;Parent=Msa0246190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
