Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284690 | XP_013463544.1 | 83.389 | 301 | 13 | 2 | 7 | 273 | 1 | 298 | 4.58e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0284690 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0207070 | Msa0284690 | 0.951331 | 2.559756e-109 | -8.615850e-47 |
| Msa0246190 | Msa0284690 | 0.900010 | 1.122531e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284690 | MtrunA17_Chr2g0300621 | 83.389 | 301 | 13 | 2 | 7 | 273 | 1 | 298 | 0.0 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284690 | AT2G06025.1 | 48.495 | 299 | 106 | 4 | 7 | 271 | 1 | 285 | 2.25e-88 | 265 |
| Msa0284690 | AT2G06025.6 | 48.495 | 299 | 106 | 4 | 7 | 271 | 1 | 285 | 2.25e-88 | 265 |
| Msa0284690 | AT2G06025.4 | 48.495 | 299 | 106 | 4 | 7 | 271 | 1 | 285 | 2.25e-88 | 265 |
| Msa0284690 | AT2G06025.3 | 47.266 | 256 | 87 | 4 | 7 | 228 | 1 | 242 | 3.80e-70 | 216 |
| Msa0284690 | AT2G06025.5 | 47.266 | 256 | 87 | 4 | 7 | 228 | 1 | 242 | 3.80e-70 | 216 |
| Msa0284690 | AT2G06025.2 | 47.266 | 256 | 87 | 4 | 7 | 228 | 1 | 242 | 3.80e-70 | 216 |
| Msa0284690 | AT2G06025.7 | 43.243 | 222 | 78 | 4 | 7 | 194 | 1 | 208 | 4.52e-50 | 164 |
Find 82 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTATCCATTCCATTT+TGG | 0.194180 | 2_3:-23137344 | Msa0284690:five_prime_UTR |
| TAAAGTAATTAAATTAAATT+AGG | 0.247120 | 2_3:+23137210 | None:intergenic |
| AAACCATCTTCCACCACTTT+AGG | 0.260565 | 2_3:+23136760 | None:intergenic |
| ATTTGAGAAGCATAAAGTTT+TGG | 0.270734 | 2_3:+23137242 | None:intergenic |
| TCCTTGTCGACGAGCCAATT+TGG | 0.274791 | 2_3:+23134540 | None:intergenic |
| AAATTTATGTGTTGCCAAAT+TGG | 0.283413 | 2_3:-23134554 | Msa0284690:CDS |
| TGAAATTCAGGTTTATGAAT+TGG | 0.285497 | 2_3:+23137104 | None:intergenic |
| TAAAGTAAGATATGAAATTC+AGG | 0.293568 | 2_3:+23137092 | None:intergenic |
| CTCATTATAAATAAAGAATA+TGG | 0.297854 | 2_3:+23133849 | None:intergenic |
| GGTCCATGAGGATGTAATTT+TGG | 0.303454 | 2_3:+23137037 | None:intergenic |
| AAGCGGTGCAAGGTGCAAAA+TGG | 0.311231 | 2_3:-23135141 | Msa0284690:CDS |
| GCATAGTCAAATTCAATAAA+AGG | 0.321610 | 2_3:+23133976 | None:intergenic |
| TCCACCACTTTAGGAACAAT+TGG | 0.325988 | 2_3:+23136769 | None:intergenic |
| CAAAAGGAAATTTGCTGATC+AGG | 0.341147 | 2_3:-23135271 | Msa0284690:intron |
| TCACCGGTCAGCCACCAAAA+TGG | 0.342382 | 2_3:+23137330 | None:intergenic |
| CTGTTTATGCTGCAACAAAA+AGG | 0.359050 | 2_3:+23134607 | None:intergenic |
| AGATTGAAAGAATAGGTTAA+TGG | 0.369167 | 2_3:+23137159 | None:intergenic |
| TTTGGTGCATTTGTAATTAT+GGG | 0.370191 | 2_3:+23137055 | None:intergenic |
| TATGCATACTCAAATGCATT+TGG | 0.372797 | 2_3:-23133958 | Msa0284690:three_prime_UTR |
| GTATACCTCAAATGATTTAC+AGG | 0.376199 | 2_3:+23134093 | None:intergenic |
| TTACCTCAAAGCCCATCTTT+TGG | 0.386865 | 2_3:+23134345 | None:intergenic |
| GTTCAATCCGTGACTGGAAT+GGG | 0.388919 | 2_3:+23133812 | None:intergenic |
| TCTCTCCTTGCAGCAAATAT+CGG | 0.397446 | 2_3:+23134744 | None:intergenic |
| CAGTTCCTGTAAATCATTTG+AGG | 0.405332 | 2_3:-23134098 | Msa0284690:three_prime_UTR |
| AGCGGTGCAAGGTGCAAAAT+GGG | 0.411100 | 2_3:-23135140 | Msa0284690:CDS |
| CCACATATACATTGACTAAA+GGG | 0.413073 | 2_3:+23134071 | None:intergenic |
| TAATGAAACAGAACAAGAAC+AGG | 0.417724 | 2_3:-23133922 | Msa0284690:three_prime_UTR |
| CCCTTTAGTCAATGTATATG+TGG | 0.424184 | 2_3:-23134071 | Msa0284690:three_prime_UTR |
| CATATTCTTTATTTATAATG+AGG | 0.433865 | 2_3:-23133848 | Msa0284690:three_prime_UTR |
| TCATTTAGCAGGTGTGAGTC+AGG | 0.439184 | 2_3:-23134414 | Msa0284690:intron |
| TAGTTAATTATGATCCAATC+TGG | 0.442431 | 2_3:-23134151 | Msa0284690:three_prime_UTR |
| ACTTTAACAACAACAACAAA+AGG | 0.450585 | 2_3:-23137193 | Msa0284690:five_prime_UTR |
| AGAACACCACCAAGTAGATA+TGG | 0.454568 | 2_3:-23134586 | Msa0284690:CDS |
| AATTTGCAACTGTTCCAGAT+TGG | 0.457980 | 2_3:+23134137 | None:intergenic |
| GTTGAAAATGCAAAATCTAA+TGG | 0.457985 | 2_3:-23134490 | Msa0284690:intron |
| ACAGTTATTGTACCAAAAGA+TGG | 0.467482 | 2_3:-23134357 | Msa0284690:CDS |
| GTACCAAAAGATGGGCTTTG+AGG | 0.468548 | 2_3:-23134348 | Msa0284690:intron |
| CCACCACTTTAGGAACAATT+GGG | 0.469375 | 2_3:+23136770 | None:intergenic |
| TTCATCTAGATTGAAAGAAT+AGG | 0.471254 | 2_3:+23137152 | None:intergenic |
| GTTCCTAAAGTGGTGGAAGA+TGG | 0.473015 | 2_3:-23136763 | Msa0284690:CDS |
| CCCACATATACATTGACTAA+AGG | 0.483225 | 2_3:+23134070 | None:intergenic |
| TCATGTTTATCAGGTGAGAA+AGG | 0.487782 | 2_3:-23134828 | Msa0284690:intron |
| TGAATTGGAATAGTTGACAT+AGG | 0.492624 | 2_3:+23137119 | None:intergenic |
| CGTAGCAAGTATGTTTCCTC+TGG | 0.493901 | 2_3:+23134198 | None:intergenic |
| AAGCCCAATTGTTCCTAAAG+TGG | 0.498436 | 2_3:-23136773 | Msa0284690:CDS |
| GATATATTGATATCTACAAA+AGG | 0.499748 | 2_3:-23135287 | Msa0284690:CDS |
| AGTTCAATCCGTGACTGGAA+TGG | 0.504230 | 2_3:+23133811 | None:intergenic |
| CGAATGGTCTTCGATTTGAT+CGG | 0.516980 | 2_3:-23136732 | Msa0284690:CDS |
| TGCATGTGGACAGAAATAAT+AGG | 0.521792 | 2_3:-23134385 | Msa0284690:CDS |
| GCCAAATTGGCTCGTCGACA+AGG | 0.522479 | 2_3:-23134541 | Msa0284690:CDS |
| GCAATGTAACCATATCTACT+TGG | 0.536879 | 2_3:+23134577 | None:intergenic |
| GCACCAAAATTACATCCTCA+TGG | 0.537776 | 2_3:-23137040 | Msa0284690:CDS |
| TATGAAGAATAAGAAGATGA+AGG | 0.539557 | 2_3:-23136818 | Msa0284690:CDS |
| CTAATCAACTCTTGTTCCGA+CGG | 0.540516 | 2_3:+23136703 | None:intergenic |
| ATTTGATCGGTTGCAGCCGT+CGG | 0.545614 | 2_3:-23136719 | Msa0284690:CDS |
| GTGCATTTGTAATTATGGGT+TGG | 0.548458 | 2_3:+23137059 | None:intergenic |
| CAGTTATTGTACCAAAAGAT+GGG | 0.555181 | 2_3:-23134356 | Msa0284690:CDS |
| GAAGATGGTTTGAGCTCGAA+TGG | 0.558899 | 2_3:-23136748 | Msa0284690:CDS |
| TTTACAGGAACTGAAGCAGT+TGG | 0.562202 | 2_3:+23134108 | None:intergenic |
| GTGGACAGAAATAATAGGCC+GGG | 0.563824 | 2_3:-23134380 | Msa0284690:CDS |
| CCCAATTGTTCCTAAAGTGG+TGG | 0.571687 | 2_3:-23136770 | Msa0284690:CDS |
| TGGTTGAAACTGCAAACTCT+CGG | 0.577388 | 2_3:-23134227 | Msa0284690:CDS |
| CCTTTAGTCAATGTATATGT+GGG | 0.578134 | 2_3:-23134070 | Msa0284690:three_prime_UTR |
| GAAGAATAAGAAGATGAAGG+AGG | 0.579221 | 2_3:-23136815 | Msa0284690:CDS |
| TGTGGACAGAAATAATAGGC+CGG | 0.580627 | 2_3:-23134381 | Msa0284690:CDS |
| AATATCCGATATTTGCTGCA+AGG | 0.586800 | 2_3:-23134749 | Msa0284690:CDS |
| ACTTCTACTTTCCGGCGTGG+TGG | 0.590556 | 2_3:+23137296 | None:intergenic |
| GGTCAGCCACCAAAATGGAA+TGG | 0.602256 | 2_3:+23137335 | None:intergenic |
| TAGTCAATGTATATGTGGGT+AGG | 0.611018 | 2_3:-23134066 | Msa0284690:three_prime_UTR |
| GGTGGATTTGATGACATCAC+CGG | 0.620914 | 2_3:+23137314 | None:intergenic |
| TTCAATCCGTGACTGGAATG+GGG | 0.640753 | 2_3:+23133813 | None:intergenic |
| TAGTCAAATTCAATAAAAGG+AGG | 0.655540 | 2_3:+23133979 | None:intergenic |
| ATGACTTCTACTTTCCGGCG+TGG | 0.658502 | 2_3:+23137293 | None:intergenic |
| CAGCTGCGCATGCATTATCG+CGG | 0.671835 | 2_3:-23135115 | Msa0284690:intron |
| AAACTCTCGGTTGTTACCAG+AGG | 0.674396 | 2_3:-23134214 | Msa0284690:CDS |
| ATGTAACCATATCTACTTGG+TGG | 0.675557 | 2_3:+23134580 | None:intergenic |
| GAGTCAGGTATATGTGCATG+TGG | 0.676318 | 2_3:-23134399 | Msa0284690:CDS |
| GCGGTGCAAGGTGCAAAATG+GGG | 0.677118 | 2_3:-23135139 | Msa0284690:CDS |
| TATTGTTTAGGAATTTAATG+CGG | 0.686710 | 2_3:-23135169 | Msa0284690:intron |
| AGAAACTTACATGGTCCATG+AGG | 0.687429 | 2_3:+23137025 | None:intergenic |
| AATGAAACAGAACAAGAACA+GGG | 0.696176 | 2_3:-23133921 | Msa0284690:three_prime_UTR |
| TGTCATCAAATCCACCACGC+CGG | 0.715726 | 2_3:-23137307 | Msa0284690:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTATTTTTGATATGAAT+AGG | - | chr2_3:23134291-23134310 | Msa0284690:intron | 15.0% |
| !! | AAAAAATAAACAAATCCAAA+CGG | + | chr2_3:23134594-23134613 | None:intergenic | 15.0% |
| !! | AAAACATTTAATGAAATGAA+GGG | + | chr2_3:23135472-23135491 | None:intergenic | 15.0% |
| !! | AAAAACATTTAATGAAATGA+AGG | + | chr2_3:23135473-23135492 | None:intergenic | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | + | chr2_3:23135581-23135600 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | + | chr2_3:23135582-23135601 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTTCATACATA+AGG | - | chr2_3:23135596-23135615 | Msa0284690:intron | 15.0% |
| !!! | TTTTCTAAATAGTAGAATAT+AGG | - | chr2_3:23135761-23135780 | Msa0284690:intron | 15.0% |
| !! | CTCATTATAAATAAAGAATA+TGG | + | chr2_3:23137330-23137349 | None:intergenic | 15.0% |
| !!! | CATATTCTTTATTTATAATG+AGG | - | chr2_3:23137328-23137347 | Msa0284690:five_prime_UTR | 15.0% |
| !! | TAAAGTAAGATATGAAATTC+AGG | + | chr2_3:23134087-23134106 | None:intergenic | 20.0% |
| !! | TTAAATAGAAGAAACTTACA+TGG | + | chr2_3:23134163-23134182 | None:intergenic | 20.0% |
| !! | AAAAATAAACAAATCCAAAC+GGG | + | chr2_3:23134593-23134612 | None:intergenic | 20.0% |
| !! | ATAAATCAGTCAATTCAAAT+GGG | - | chr2_3:23134784-23134803 | Msa0284690:CDS | 20.0% |
| !!! | TTTGAAATTGAAAATTCTCA+AGG | - | chr2_3:23134869-23134888 | Msa0284690:intron | 20.0% |
| !! | TTCATGAAATTGTAGAAATT+TGG | + | chr2_3:23135060-23135079 | None:intergenic | 20.0% |
| !! | TACAATTTCATGAACTAAAA+TGG | - | chr2_3:23135066-23135085 | Msa0284690:intron | 20.0% |
| !! | ACAAATGAATGATAAATGAT+TGG | + | chr2_3:23135227-23135246 | None:intergenic | 20.0% |
| !! | ATTAACAATAGGTAAGAATT+TGG | - | chr2_3:23135833-23135852 | Msa0284690:intron | 20.0% |
| !! | TTAACAATAGGTAAGAATTT+GGG | - | chr2_3:23135834-23135853 | Msa0284690:intron | 20.0% |
| !! | GATATATTGATATCTACAAA+AGG | - | chr2_3:23135889-23135908 | Msa0284690:intron | 20.0% |
| !! | CATTAAATTCCTAAACAATA+GGG | + | chr2_3:23136007-23136026 | None:intergenic | 20.0% |
| !! | TATTGTTTAGGAATTTAATG+CGG | - | chr2_3:23136007-23136026 | Msa0284690:intron | 20.0% |
| !! | TGATCTAGTTAAAAAAATTC+AGG | - | chr2_3:23136107-23136126 | Msa0284690:intron | 20.0% |
| !! | ATACCACAAAAATTACAAAA+TGG | + | chr2_3:23137164-23137183 | None:intergenic | 20.0% |
| !!! | TTTGAGAAGCATAAAGTTTT+GGG | + | chr2_3:23133936-23133955 | None:intergenic | 25.0% |
| !!! | ATTTGAGAAGCATAAAGTTT+TGG | + | chr2_3:23133937-23133956 | None:intergenic | 25.0% |
| ! | ACTTTAACAACAACAACAAA+AGG | - | chr2_3:23133983-23134002 | Msa0284690:three_prime_UTR | 25.0% |
| ! | AGATTGAAAGAATAGGTTAA+TGG | + | chr2_3:23134020-23134039 | None:intergenic | 25.0% |
| ! | TTCATCTAGATTGAAAGAAT+AGG | + | chr2_3:23134027-23134046 | None:intergenic | 25.0% |
| !! | TGAAATTCAGGTTTATGAAT+TGG | + | chr2_3:23134075-23134094 | None:intergenic | 25.0% |
| !! | TTTGGTGCATTTGTAATTAT+GGG | + | chr2_3:23134124-23134143 | None:intergenic | 25.0% |
| !!! | TTTTGGTGCATTTGTAATTA+TGG | + | chr2_3:23134125-23134144 | None:intergenic | 25.0% |
| !! | TTTTGATATGAATAGGTCTA+TGG | - | chr2_3:23134298-23134317 | Msa0284690:intron | 25.0% |
| ! | TATGAAGAATAAGAAGATGA+AGG | - | chr2_3:23134358-23134377 | Msa0284690:CDS | 25.0% |
| !! | AGAGAAAATAGATTTGAGTT+TGG | - | chr2_3:23134494-23134513 | Msa0284690:CDS | 25.0% |
| !! | GAGAAAATAGATTTGAGTTT+GGG | - | chr2_3:23134495-23134514 | Msa0284690:CDS | 25.0% |
| ! | CATAAATCAGTCAATTCAAA+TGG | - | chr2_3:23134783-23134802 | Msa0284690:CDS | 25.0% |
| ! | CATACAATTTCATACACTAA+GGG | + | chr2_3:23134810-23134829 | None:intergenic | 25.0% |
| ! | AATAAAGCTTAACCTAATGT+TGG | - | chr2_3:23135167-23135186 | Msa0284690:intron | 25.0% |
| !! | TTTTCTTAGATTCCAACATT+AGG | + | chr2_3:23135182-23135201 | None:intergenic | 25.0% |
| !! | ATCATTCATTTGTACTTTTG+TGG | - | chr2_3:23135234-23135253 | Msa0284690:intron | 25.0% |
| !!! | AATCTCCAATGTTTTTTCAT+AGG | - | chr2_3:23135397-23135416 | Msa0284690:intron | 25.0% |
| !!! | ATCTCCAATGTTTTTTCATA+GGG | - | chr2_3:23135398-23135417 | Msa0284690:intron | 25.0% |
| ! | TTAACCCTATGAAAAAACAT+TGG | + | chr2_3:23135405-23135424 | None:intergenic | 25.0% |
| !!! | CATTTGACTTGATTAACAAT+AGG | - | chr2_3:23135822-23135841 | Msa0284690:intron | 25.0% |
| ! | GCATTAAATTCCTAAACAAT+AGG | + | chr2_3:23136008-23136027 | None:intergenic | 25.0% |
| ! | AATTTAATGCGGTAAAAAAG+CGG | - | chr2_3:23136018-23136037 | Msa0284690:intron | 25.0% |
| !!! | TCGATAATAAAAAGTGTTGT+AGG | - | chr2_3:23136391-23136410 | Msa0284690:intron | 25.0% |
| ! | AAATTTATGTGTTGCCAAAT+TGG | - | chr2_3:23136622-23136641 | Msa0284690:intron | 25.0% |
| ! | GTTGAAAATGCAAAATCTAA+TGG | - | chr2_3:23136686-23136705 | Msa0284690:intron | 25.0% |
| !!! | GTTAAGTTGAAGTAACTTTA+TGG | - | chr2_3:23136719-23136738 | Msa0284690:CDS | 25.0% |
| ! | CAACAATCTATAACAAAAAC+TGG | + | chr2_3:23136882-23136901 | None:intergenic | 25.0% |
| ! | ACATGTGAAATCAATAACTA+TGG | - | chr2_3:23136904-23136923 | Msa0284690:intron | 25.0% |
| ! | TAGTTAATTATGATCCAATC+TGG | - | chr2_3:23137025-23137044 | Msa0284690:intron | 25.0% |
| ! | TAGTCAAATTCAATAAAAGG+AGG | + | chr2_3:23137200-23137219 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATTCAATAAA+AGG | + | chr2_3:23137203-23137222 | None:intergenic | 25.0% |
| ! | GCATATTATCCATTCCATTT+TGG | - | chr2_3:23133832-23133851 | Msa0284690:three_prime_UTR | 30.0% |
| ! | TATTATCCATTCCATTTTGG+TGG | - | chr2_3:23133835-23133854 | Msa0284690:three_prime_UTR | 30.0% |
| !! | TTTTGATGACTTCTACTTTC+CGG | + | chr2_3:23133891-23133910 | None:intergenic | 30.0% |
| TGAATTGGAATAGTTGACAT+AGG | + | chr2_3:23134060-23134079 | None:intergenic | 30.0% | |
| !! | TTGGGTATGTTTTAAACTGT+TGG | - | chr2_3:23134556-23134575 | Msa0284690:CDS | 30.0% |
| CCATACAATTTCATACACTA+AGG | + | chr2_3:23134811-23134830 | None:intergenic | 30.0% | |
| CCTTAGTGTATGAAATTGTA+TGG | - | chr2_3:23134808-23134827 | Msa0284690:CDS | 30.0% | |
| ! | CAATTTATTGTCTGACTTGT+AGG | - | chr2_3:23134912-23134931 | Msa0284690:intron | 30.0% |
| !! | ACTTGTAGGATTAGTTGATT+TGG | - | chr2_3:23134926-23134945 | Msa0284690:intron | 30.0% |
| ! | ATTCACTTTGTCTGTCTTTT+AGG | - | chr2_3:23135091-23135110 | Msa0284690:intron | 30.0% |
| TGAAGGGACTATAATTCAAA+GGG | + | chr2_3:23135456-23135475 | None:intergenic | 30.0% | |
| ATGAAGGGACTATAATTCAA+AGG | + | chr2_3:23135457-23135476 | None:intergenic | 30.0% | |
| GATTATAAACCAGATCAAGA+TGG | - | chr2_3:23135721-23135740 | Msa0284690:intron | 30.0% | |
| AACAAGAATCCCTATTGTTT+AGG | - | chr2_3:23135995-23136014 | Msa0284690:intron | 30.0% | |
| TGTTTGGATTCATGTTTATC+AGG | - | chr2_3:23136339-23136358 | Msa0284690:intron | 30.0% | |
| ACAGTTATTGTACCAAAAGA+TGG | - | chr2_3:23136819-23136838 | Msa0284690:CDS | 30.0% | |
| CAGTTATTGTACCAAAAGAT+GGG | - | chr2_3:23136820-23136839 | Msa0284690:CDS | 30.0% | |
| !! | CTTTGAGGTAATGTAATTGT+TGG | - | chr2_3:23136843-23136862 | Msa0284690:CDS | 30.0% |
| ! | TTTCAACCATCTGAAATTGA+CGG | + | chr2_3:23136938-23136957 | None:intergenic | 30.0% |
| GTATACCTCAAATGATTTAC+AGG | + | chr2_3:23137086-23137105 | None:intergenic | 30.0% | |
| ! | CCACATATACATTGACTAAA+GGG | + | chr2_3:23137108-23137127 | None:intergenic | 30.0% |
| CCTTTAGTCAATGTATATGT+GGG | - | chr2_3:23137106-23137125 | Msa0284690:CDS | 30.0% | |
| GACATCCATACATAAAAAGA+TGG | + | chr2_3:23137139-23137158 | None:intergenic | 30.0% | |
| CCACAAAAATTACAAAATGG+AGG | + | chr2_3:23137161-23137180 | None:intergenic | 30.0% | |
| ! | CCTCCATTTTGTAATTTTTG+TGG | - | chr2_3:23137158-23137177 | Msa0284690:five_prime_UTR | 30.0% |
| TATGCATACTCAAATGCATT+TGG | - | chr2_3:23137218-23137237 | Msa0284690:five_prime_UTR | 30.0% | |
| TAATGAAACAGAACAAGAAC+AGG | - | chr2_3:23137254-23137273 | Msa0284690:five_prime_UTR | 30.0% | |
| AATGAAACAGAACAAGAACA+GGG | - | chr2_3:23137255-23137274 | Msa0284690:five_prime_UTR | 30.0% | |
| !!! | ATAAAGTTTTGGGAGGAACA+TGG | + | chr2_3:23133926-23133945 | None:intergenic | 35.0% |
| GTGCATTTGTAATTATGGGT+TGG | + | chr2_3:23134120-23134139 | None:intergenic | 35.0% | |
| GAAGAATAAGAAGATGAAGG+AGG | - | chr2_3:23134361-23134380 | Msa0284690:CDS | 35.0% | |
| ! | TGTGCTTGATGAAGAGTTTT+GGG | - | chr2_3:23134538-23134557 | Msa0284690:CDS | 35.0% |
| GGGAGAATCAAACATATGAA+AGG | - | chr2_3:23135353-23135372 | Msa0284690:intron | 35.0% | |
| GATCACAGAGATAAAATGTG+AGG | + | chr2_3:23135501-23135520 | None:intergenic | 35.0% | |
| CCGTTATAGAATTAACAGCA+GGG | + | chr2_3:23135533-23135552 | None:intergenic | 35.0% | |
| CCCTGCTGTTAATTCTATAA+CGG | - | chr2_3:23135530-23135549 | Msa0284690:intron | 35.0% | |
| TCCGTTATAGAATTAACAGC+AGG | + | chr2_3:23135534-23135553 | None:intergenic | 35.0% | |
| ! | TCTATAACGGAATGCTGATA+TGG | - | chr2_3:23135543-23135562 | Msa0284690:intron | 35.0% |
| !! | TAGTGGGTCCCAATTATTTT+AGG | - | chr2_3:23135570-23135589 | Msa0284690:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+GGG | - | chr2_3:23135571-23135590 | Msa0284690:intron | 35.0% |
| AAAATGTGTTCCTTTCATCG+TGG | - | chr2_3:23135639-23135658 | Msa0284690:intron | 35.0% | |
| AACTTGTGTTGAGCATATTG+TGG | - | chr2_3:23135681-23135700 | Msa0284690:intron | 35.0% | |
| AAATGATTTACACCCACAAC+CGG | + | chr2_3:23135807-23135826 | None:intergenic | 35.0% | |
| !! | CAAAAGGAAATTTGCTGATC+AGG | - | chr2_3:23135905-23135924 | Msa0284690:intron | 35.0% |
| CCAGTGTATAGTACTAAGTA+AGG | + | chr2_3:23135954-23135973 | None:intergenic | 35.0% | |
| CCTTACTTAGTACTATACAC+TGG | - | chr2_3:23135951-23135970 | Msa0284690:intron | 35.0% | |
| CTTGACTATGATTCGACTTA+CGG | - | chr2_3:23136316-23136335 | Msa0284690:intron | 35.0% | |
| TCATGTTTATCAGGTGAGAA+AGG | - | chr2_3:23136348-23136367 | Msa0284690:intron | 35.0% | |
| ! | AATATCCGATATTTGCTGCA+AGG | - | chr2_3:23136427-23136446 | Msa0284690:intron | 35.0% |
| AGTCATCATATCATTTCTGC+AGG | - | chr2_3:23136532-23136551 | Msa0284690:intron | 35.0% | |
| CTGTTTATGCTGCAACAAAA+AGG | + | chr2_3:23136572-23136591 | None:intergenic | 35.0% | |
| ATGTAACCATATCTACTTGG+TGG | + | chr2_3:23136599-23136618 | None:intergenic | 35.0% | |
| GCAATGTAACCATATCTACT+TGG | + | chr2_3:23136602-23136621 | None:intergenic | 35.0% | |
| ! | TATGGTTTACACCTGATTTG+TGG | - | chr2_3:23136737-23136756 | Msa0284690:CDS | 35.0% |
| GCTAAATGAATCCACAAATC+AGG | + | chr2_3:23136751-23136770 | None:intergenic | 35.0% | |
| GATTTGTGGATTCATTTAGC+AGG | - | chr2_3:23136751-23136770 | Msa0284690:CDS | 35.0% | |
| TGCATGTGGACAGAAATAAT+AGG | - | chr2_3:23136791-23136810 | Msa0284690:CDS | 35.0% | |
| ! | TTTTGGTACAATAACTGTCC+CGG | + | chr2_3:23136817-23136836 | None:intergenic | 35.0% |
| AATTTGCAACTGTTCCAGAT+TGG | + | chr2_3:23137042-23137061 | None:intergenic | 35.0% | |
| CAGTTCCTGTAAATCATTTG+AGG | - | chr2_3:23137078-23137097 | Msa0284690:CDS | 35.0% | |
| CCCTTTAGTCAATGTATATG+TGG | - | chr2_3:23137105-23137124 | Msa0284690:CDS | 35.0% | |
| ! | CCCACATATACATTGACTAA+AGG | + | chr2_3:23137109-23137128 | None:intergenic | 35.0% |
| TAGTCAATGTATATGTGGGT+AGG | - | chr2_3:23137110-23137129 | Msa0284690:CDS | 35.0% | |
| ! | GGTGTCCATCTTTTTATGTA+TGG | - | chr2_3:23137131-23137150 | Msa0284690:CDS | 35.0% |
| !!! | GAGAAGCATAAAGTTTTGGG+AGG | + | chr2_3:23133933-23133952 | None:intergenic | 40.0% |
| GCACCAAAATTACATCCTCA+TGG | - | chr2_3:23134136-23134155 | Msa0284690:three_prime_UTR | 40.0% | |
| ! | GGTCCATGAGGATGTAATTT+TGG | + | chr2_3:23134142-23134161 | None:intergenic | 40.0% |
| AGAAACTTACATGGTCCATG+AGG | + | chr2_3:23134154-23134173 | None:intergenic | 40.0% | |
| AAGCCCAATTGTTCCTAAAG+TGG | - | chr2_3:23134403-23134422 | Msa0284690:CDS | 40.0% | |
| ! | CCACCACTTTAGGAACAATT+GGG | + | chr2_3:23134409-23134428 | None:intergenic | 40.0% |
| ! | TCCACCACTTTAGGAACAAT+TGG | + | chr2_3:23134410-23134429 | None:intergenic | 40.0% |
| AAACCATCTTCCACCACTTT+AGG | + | chr2_3:23134419-23134438 | None:intergenic | 40.0% | |
| ! | CGAATGGTCTTCGATTTGAT+CGG | - | chr2_3:23134444-23134463 | Msa0284690:intron | 40.0% |
| CTAATCAACTCTTGTTCCGA+CGG | + | chr2_3:23134476-23134495 | None:intergenic | 40.0% | |
| AGTTTGGGCAATTTGTAGCT+AGG | - | chr2_3:23134510-23134529 | Msa0284690:CDS | 40.0% | |
| GTTTGGGCAATTTGTAGCTA+GGG | - | chr2_3:23134511-23134530 | Msa0284690:CDS | 40.0% | |
| ! | CTGTGCTTGATGAAGAGTTT+TGG | - | chr2_3:23134537-23134556 | Msa0284690:CDS | 40.0% |
| TCAAAGGGACGCAAAATGTA+AGG | + | chr2_3:23135441-23135460 | None:intergenic | 40.0% | |
| AATGCTGATATGGCAGTTAG+TGG | - | chr2_3:23135553-23135572 | Msa0284690:intron | 40.0% | |
| ATGCTGATATGGCAGTTAGT+GGG | - | chr2_3:23135554-23135573 | Msa0284690:intron | 40.0% | |
| AACACAACAACCACGATGAA+AGG | + | chr2_3:23135652-23135671 | None:intergenic | 40.0% | |
| TGACATCATCCATCTTGATC+TGG | + | chr2_3:23135733-23135752 | None:intergenic | 40.0% | |
| AGTAATCTGAATGACCCTAC+CGG | - | chr2_3:23135785-23135804 | Msa0284690:intron | 40.0% | |
| !! | AGGAAATTTGCTGATCAGGT+AGG | - | chr2_3:23135909-23135928 | Msa0284690:intron | 40.0% |
| TTTGCTGATCAGGTAGGAAT+CGG | - | chr2_3:23135915-23135934 | Msa0284690:intron | 40.0% | |
| CGTAAGTCGAATCATAGTCA+AGG | + | chr2_3:23136318-23136337 | None:intergenic | 40.0% | |
| ATGATTCGACTTACGGTGTT+TGG | - | chr2_3:23136323-23136342 | Msa0284690:intron | 40.0% | |
| TCTCTCCTTGCAGCAAATAT+CGG | + | chr2_3:23136435-23136454 | None:intergenic | 40.0% | |
| TACTGTTCTGTCTAGACTGA+TGG | - | chr2_3:23136488-23136507 | Msa0284690:intron | 40.0% | |
| AGAACACCACCAAGTAGATA+TGG | - | chr2_3:23136590-23136609 | Msa0284690:intron | 40.0% | |
| TGTGGACAGAAATAATAGGC+CGG | - | chr2_3:23136795-23136814 | Msa0284690:CDS | 40.0% | |
| ! | TTACCTCAAAGCCCATCTTT+TGG | + | chr2_3:23136834-23136853 | None:intergenic | 40.0% |
| ATTTCGCCGTCAATTTCAGA+TGG | - | chr2_3:23136929-23136948 | Msa0284690:intron | 40.0% | |
| TGGTTGAAACTGCAAACTCT+CGG | - | chr2_3:23136949-23136968 | Msa0284690:intron | 40.0% | |
| TTTACAGGAACTGAAGCAGT+TGG | + | chr2_3:23137071-23137090 | None:intergenic | 40.0% | |
| !! | ATTCCATTTTGGTGGCTGAC+CGG | - | chr2_3:23133843-23133862 | Msa0284690:three_prime_UTR | 45.0% |
| ! | GGTGGATTTGATGACATCAC+CGG | + | chr2_3:23133865-23133884 | None:intergenic | 45.0% |
| CCCAATTGTTCCTAAAGTGG+TGG | - | chr2_3:23134406-23134425 | Msa0284690:CDS | 45.0% | |
| ! | GTTCCTAAAGTGGTGGAAGA+TGG | - | chr2_3:23134413-23134432 | Msa0284690:intron | 45.0% |
| GAAGATGGTTTGAGCTCGAA+TGG | - | chr2_3:23134428-23134447 | Msa0284690:intron | 45.0% | |
| TGGATAGAAAGAAGCCCGTT+TGG | - | chr2_3:23134576-23134595 | Msa0284690:CDS | 45.0% | |
| GCTAAGGGCAGAAAGTCATT+GGG | - | chr2_3:23135333-23135352 | Msa0284690:intron | 45.0% | |
| ATTTACACCCACAACCGGTA+GGG | + | chr2_3:23135802-23135821 | None:intergenic | 45.0% | |
| ! | TGCAAGGAGAGACTTTTCCT+GGG | - | chr2_3:23136443-23136462 | Msa0284690:intron | 45.0% |
| GAAAGAATGAGTAGTACCCC+AGG | + | chr2_3:23136463-23136482 | None:intergenic | 45.0% | |
| TCATTTAGCAGGTGTGAGTC+AGG | - | chr2_3:23136762-23136781 | Msa0284690:CDS | 45.0% | |
| GAGTCAGGTATATGTGCATG+TGG | - | chr2_3:23136777-23136796 | Msa0284690:CDS | 45.0% | |
| GTGGACAGAAATAATAGGCC+GGG | - | chr2_3:23136796-23136815 | Msa0284690:CDS | 45.0% | |
| ! | GTACCAAAAGATGGGCTTTG+AGG | - | chr2_3:23136828-23136847 | Msa0284690:CDS | 45.0% |
| AAACTCTCGGTTGTTACCAG+AGG | - | chr2_3:23136962-23136981 | Msa0284690:intron | 45.0% | |
| CGTAGCAAGTATGTTTCCTC+TGG | + | chr2_3:23136981-23137000 | None:intergenic | 45.0% | |
| !! | TAAAGTAATTAAATTAAATT+AGG | + | chr2_3:23133969-23133988 | None:intergenic | 5.0% |
| GGTCAGCCACCAAAATGGAA+TGG | + | chr2_3:23133844-23133863 | None:intergenic | 50.0% | |
| TGTCATCAAATCCACCACGC+CGG | - | chr2_3:23133869-23133888 | Msa0284690:three_prime_UTR | 50.0% | |
| ATGACTTCTACTTTCCGGCG+TGG | + | chr2_3:23133886-23133905 | None:intergenic | 50.0% | |
| ATTTGATCGGTTGCAGCCGT+CGG | - | chr2_3:23134457-23134476 | Msa0284690:intron | 50.0% | |
| ! | TTCTTTTGCAGACAGCAGCC+TGG | - | chr2_3:23135311-23135330 | Msa0284690:intron | 50.0% |
| ATGACTTTCTGCCCTTAGCC+AGG | + | chr2_3:23135332-23135351 | None:intergenic | 50.0% | |
| GGCTAAGGGCAGAAAGTCAT+TGG | - | chr2_3:23135332-23135351 | Msa0284690:intron | 50.0% | |
| ! | TGAATGACCCTACCGGTTGT+GGG | - | chr2_3:23135792-23135811 | Msa0284690:intron | 50.0% |
| GATTTACACCCACAACCGGT+AGG | + | chr2_3:23135803-23135822 | None:intergenic | 50.0% | |
| TGCGGTAAAAAAGCGGTGCA+AGG | - | chr2_3:23136025-23136044 | Msa0284690:intron | 50.0% | |
| AAGCGGTGCAAGGTGCAAAA+TGG | - | chr2_3:23136035-23136054 | Msa0284690:intron | 50.0% | |
| AGCGGTGCAAGGTGCAAAAT+GGG | - | chr2_3:23136036-23136055 | Msa0284690:intron | 50.0% | |
| ! | CTGCAAGGAGAGACTTTTCC+TGG | - | chr2_3:23136442-23136461 | Msa0284690:intron | 50.0% |
| ! | GCAAGGAGAGACTTTTCCTG+GGG | - | chr2_3:23136444-23136463 | Msa0284690:intron | 50.0% |
| TCCTTGTCGACGAGCCAATT+TGG | + | chr2_3:23136639-23136658 | None:intergenic | 50.0% | |
| TCACCGGTCAGCCACCAAAA+TGG | + | chr2_3:23133849-23133868 | None:intergenic | 55.0% | |
| ACTTCTACTTTCCGGCGTGG+TGG | + | chr2_3:23133883-23133902 | None:intergenic | 55.0% | |
| ! | CTGAATGACCCTACCGGTTG+TGG | - | chr2_3:23135791-23135810 | Msa0284690:intron | 55.0% |
| GCTGATCAGGTAGGAATCGG+CGG | - | chr2_3:23135918-23135937 | Msa0284690:intron | 55.0% | |
| GCGGTGCAAGGTGCAAAATG+GGG | - | chr2_3:23136037-23136056 | Msa0284690:intron | 55.0% | |
| CAGCTGCGCATGCATTATCG+CGG | - | chr2_3:23136061-23136080 | Msa0284690:intron | 55.0% | |
| !! | GCCAAATTGGCTCGTCGACA+AGG | - | chr2_3:23136635-23136654 | Msa0284690:intron | 55.0% |
| TGCAGACAGCAGCCTGGCTA+AGG | - | chr2_3:23135317-23135336 | Msa0284690:intron | 60.0% | |
| GCAGACAGCAGCCTGGCTAA+GGG | - | chr2_3:23135318-23135337 | Msa0284690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 23133826 | 23137372 | 23133826 | ID=Msa0284690;Name=Msa0284690 |
| chr2_3 | mRNA | 23133826 | 23137372 | 23133826 | ID=Msa0284690-mRNA-1;Parent=Msa0284690;Name=Msa0284690-mRNA-1;_AED=0.13;_eAED=0.13;_QI=216|0.85|0.87|1|0.85|0.87|8|359|274 |
| chr2_3 | exon | 23133826 | 23134250 | 23133826 | ID=Msa0284690-mRNA-1:exon:8935;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23134349 | 23134425 | 23134349 | ID=Msa0284690-mRNA-1:exon:8934;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23134491 | 23134644 | 23134491 | ID=Msa0284690-mRNA-1:exon:8933;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23134733 | 23134837 | 23134733 | ID=Msa0284690-mRNA-1:exon:8932;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23135116 | 23135181 | 23135116 | ID=Msa0284690-mRNA-1:exon:8931;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23135272 | 23135308 | 23135272 | ID=Msa0284690-mRNA-1:exon:8930;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23136688 | 23136885 | 23136688 | ID=Msa0284690-mRNA-1:exon:8929;Parent=Msa0284690-mRNA-1 |
| chr2_3 | exon | 23137035 | 23137372 | 23137035 | ID=Msa0284690-mRNA-1:exon:8928;Parent=Msa0284690-mRNA-1 |
| chr2_3 | five_prime_UTR | 23137157 | 23137372 | 23137157 | ID=Msa0284690-mRNA-1:five_prime_utr;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23137035 | 23137156 | 23137035 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23136688 | 23136885 | 23136688 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23135272 | 23135308 | 23135272 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23135116 | 23135181 | 23135116 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23134733 | 23134837 | 23134733 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23134491 | 23134644 | 23134491 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23134349 | 23134425 | 23134349 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | CDS | 23134185 | 23134250 | 23134185 | ID=Msa0284690-mRNA-1:cds;Parent=Msa0284690-mRNA-1 |
| chr2_3 | three_prime_UTR | 23133826 | 23134184 | 23133826 | ID=Msa0284690-mRNA-1:three_prime_utr;Parent=Msa0284690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
