Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208180 | XP_039686516.1 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 6.90e-119 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208180 | sp|Q5RC30|SC11C_PONAB | 60.000 | 165 | 64 | 2 | 6 | 169 | 17 | 180 | 3.91e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208180 | I3SCN5 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 3.30e-119 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208180 | Msa0208300 | 0.816293 | 5.957939e-52 | -8.615850e-47 |
| Msa0208180 | Msa0208310 | 0.887112 | 1.899165e-72 | -8.615850e-47 |
| Msa0208180 | Msa1079190 | 0.810408 | 1.169754e-50 | -8.615850e-47 |
| Msa0208180 | Msa1169080 | 0.815054 | 1.125421e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208180 | MtrunA17_Chr2g0307071 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 6.35e-123 | 344 |
| Msa0208180 | MtrunA17_Chr2g0332921 | 76.786 | 168 | 39 | 0 | 1 | 168 | 1 | 168 | 6.99e-94 | 271 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208180 | AT1G52600.1 | 75.000 | 168 | 42 | 0 | 1 | 168 | 1 | 168 | 1.46e-92 | 268 |
| Msa0208180 | AT3G15710.1 | 72.024 | 168 | 47 | 0 | 1 | 168 | 1 | 168 | 1.41e-86 | 253 |
Find 58 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGTCGTTGTTGTTCTTTC+TGG | 0.084795 | 2_1:-42762635 | Msa0208180:CDS |
| TTTATAGGTGAGTTAGTTAA+AGG | 0.201163 | 2_1:+42763051 | None:intergenic |
| TAAATTTGCAATATATTTAT+AGG | 0.208345 | 2_1:+42763036 | None:intergenic |
| CAATGATTTGCAATTAACTA+TGG | 0.212623 | 2_1:-42757235 | Msa0208180:CDS |
| AATTGTTCACCGTGTGATTA+AGG | 0.255432 | 2_1:-42760791 | Msa0208180:intron |
| TAACATCGGCATTAATAATA+TGG | 0.256413 | 2_1:-42762691 | Msa0208180:CDS |
| AAAGAACAAACCTTGATAAT+AGG | 0.272967 | 2_1:+42759015 | None:intergenic |
| TGCTGTGGATCCCTGTTTAC+GGG | 0.324021 | 2_1:+42763081 | None:intergenic |
| TAATGCAATGTGTGATATAT+AGG | 0.327695 | 2_1:+42763003 | None:intergenic |
| GTGCTGTGGATCCCTGTTTA+CGG | 0.350583 | 2_1:+42763080 | None:intergenic |
| GTTCTTACCTTATGCTGGTT+GGG | 0.356889 | 2_1:-42759061 | Msa0208180:CDS |
| AAAGGGTTAATGTGTATAAC+TGG | 0.369021 | 2_1:-42762668 | Msa0208180:CDS |
| CGAGACTAAAACCCGTAAAC+AGG | 0.377090 | 2_1:-42763092 | None:intergenic |
| TTCAGGTTCTTACCTTATGC+TGG | 0.385331 | 2_1:-42759066 | Msa0208180:intron |
| GGTTCTTACCTTATGCTGGT+TGG | 0.392005 | 2_1:-42759062 | Msa0208180:CDS |
| TTTGATTTCAATTCCGCAAT+GGG | 0.395604 | 2_1:-42762909 | Msa0208180:exon |
| TTTCAATTCCGCAATGGGTT+GGG | 0.402780 | 2_1:-42762904 | Msa0208180:exon |
| TTAATCACACGGTGAACAAT+TGG | 0.403082 | 2_1:+42760793 | None:intergenic |
| TCTGAGTTTAATTGACTTGA+CGG | 0.418784 | 2_1:+42762863 | None:intergenic |
| AGCAAGGATCCAATTCGTTC+AGG | 0.422641 | 2_1:-42762024 | Msa0208180:CDS |
| TTATAGGTGAGTTAGTTAAA+GGG | 0.436540 | 2_1:+42763052 | None:intergenic |
| CATTGGTTATACCTTTAGTA+AGG | 0.437172 | 2_1:+42760300 | None:intergenic |
| GTAGATAACTAATGATGAAA+AGG | 0.437747 | 2_1:-42757268 | Msa0208180:intron |
| CTTTCTGGAAGCATGGAACC+TGG | 0.438017 | 2_1:-42762620 | Msa0208180:CDS |
| CTTCCGTATCTTGACCTTCG+TGG | 0.438482 | 2_1:+42760333 | None:intergenic |
| ATTTCAATTCCGCAATGGGT+TGG | 0.460175 | 2_1:-42762905 | Msa0208180:exon |
| TGTACAATTATAACCAGGAT+TGG | 0.463802 | 2_1:-42759994 | Msa0208180:CDS |
| ACAATGTCTCCTGAACGAAT+TGG | 0.474196 | 2_1:+42762015 | None:intergenic |
| CTCAATTCTATAAAATACCT+TGG | 0.488915 | 2_1:-42762966 | Msa0208180:five_prime_UTR |
| GATACTTATTACCTTACTAA+AGG | 0.497706 | 2_1:-42760311 | Msa0208180:intron |
| TTGCACCAAGTCATCACTCT+TGG | 0.504906 | 2_1:-42762834 | Msa0208180:intron |
| TGTTGTTCTTTCTGGAAGCA+TGG | 0.506152 | 2_1:-42762627 | Msa0208180:CDS |
| CGGCATTAATAATATGGAAA+GGG | 0.506307 | 2_1:-42762685 | Msa0208180:CDS |
| CATATTATGGGAAGAGCTGT+CGG | 0.509673 | 2_1:-42759959 | Msa0208180:CDS |
| GTTTGATTTCAATTCCGCAA+TGG | 0.510275 | 2_1:-42762910 | Msa0208180:exon |
| ATTGTAGCCCAACCAGCATA+AGG | 0.512184 | 2_1:+42759054 | None:intergenic |
| AATGATTTGCAATTAACTAT+GGG | 0.512479 | 2_1:-42757234 | Msa0208180:CDS |
| ATGCTTACTCTTTGGAAACC+AGG | 0.531614 | 2_1:+42762602 | None:intergenic |
| ACAATAATCCTACAGATGAC+AGG | 0.535864 | 2_1:-42760021 | Msa0208180:CDS |
| TCGGCATTAATAATATGGAA+AGG | 0.538470 | 2_1:-42762686 | Msa0208180:CDS |
| TTCAGGGATGATTGTAACAT+CGG | 0.546152 | 2_1:-42762705 | Msa0208180:intron |
| TATGGGTGTTGACTATCCGC+TGG | 0.560414 | 2_1:-42757217 | Msa0208180:CDS |
| TTTGTTCTTGACCATGAGCA+AGG | 0.565217 | 2_1:-42762040 | Msa0208180:CDS |
| ATATTATGGGAAGAGCTGTC+GGG | 0.568340 | 2_1:-42759958 | Msa0208180:intron |
| CCAGAAAGAACAACAACGAC+CGG | 0.569922 | 2_1:+42762635 | None:intergenic |
| ACATACCAAGAGTGATGACT+TGG | 0.596302 | 2_1:+42762829 | None:intergenic |
| CAATAATCCTACAGATGACA+GGG | 0.602238 | 2_1:-42760020 | Msa0208180:CDS |
| ACGAATTGGATCCTTGCTCA+TGG | 0.603335 | 2_1:+42762029 | None:intergenic |
| GGTCCACGAAGGTCAAGATA+CGG | 0.607507 | 2_1:-42760336 | Msa0208180:CDS |
| TATAACTGGAACTGAATCGC+CGG | 0.628126 | 2_1:-42762654 | Msa0208180:CDS |
| AATTCGTTCAGGAGACATTG+TGG | 0.628702 | 2_1:-42762013 | Msa0208180:CDS |
| GAGACTAAAACCCGTAAACA+GGG | 0.638692 | 2_1:-42763091 | None:intergenic |
| GTCTGAAACCCAACCCATTG+CGG | 0.641477 | 2_1:+42762896 | None:intergenic |
| TACAAAACCCTGTCATCTGT+AGG | 0.643827 | 2_1:+42760013 | None:intergenic |
| GGGTGTTGACTATCCGCTGG+AGG | 0.669535 | 2_1:-42757214 | None:intergenic |
| TCATACATACCTTAATCACA+CGG | 0.700890 | 2_1:+42760782 | None:intergenic |
| GTTAAAGGGAGACAGTGCTG+TGG | 0.707765 | 2_1:+42763066 | None:intergenic |
| TGCGGAATTGAAATCAAACG+AGG | 0.737955 | 2_1:+42762914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTGCAATATATTTAT+AGG | + | chr2_1:42757269-42757288 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAATTTGTTTC+AGG | - | chr2_1:42757580-42757599 | Msa0208180:intron | 10.0% |
| !!! | TTTTTATTTAATTTGTTTCA+GGG | - | chr2_1:42757581-42757600 | Msa0208180:intron | 10.0% |
| !!! | AGAAATATTTTATGATTATT+TGG | - | chr2_1:42758392-42758411 | Msa0208180:intron | 10.0% |
| !!! | GAAATATTTTATGATTATTT+GGG | - | chr2_1:42758393-42758412 | Msa0208180:intron | 10.0% |
| !!! | AAATATTTTATGATTATTTG+GGG | - | chr2_1:42758394-42758413 | Msa0208180:intron | 10.0% |
| !!! | TTAATTAATTCAATTTTCTA+GGG | - | chr2_1:42761046-42761065 | Msa0208180:intron | 10.0% |
| !! | ATAATTCTTATATATTGAAT+TGG | + | chr2_1:42761838-42761857 | None:intergenic | 10.0% |
| !! | TAATGTTTAATAAAAACTTG+TGG | - | chr2_1:42758214-42758233 | Msa0208180:intron | 15.0% |
| !!! | TTTTTAAACATTTTCTTTAC+TGG | + | chr2_1:42758915-42758934 | None:intergenic | 15.0% |
| !!! | TATAATAATGTATTGTTGTT+TGG | - | chr2_1:42759314-42759333 | Msa0208180:intron | 15.0% |
| !!! | TTATTTTTATAAACCAGAAA+AGG | - | chr2_1:42759367-42759386 | Msa0208180:intron | 15.0% |
| !!! | CTTAATTAATTCAATTTTCT+AGG | - | chr2_1:42761045-42761064 | Msa0208180:intron | 15.0% |
| !!! | TTAAATGTTAGTTTTGATAT+AGG | + | chr2_1:42761626-42761645 | None:intergenic | 15.0% |
| !! | ATATAAGAATTATTGTTTGA+TGG | - | chr2_1:42761845-42761864 | Msa0208180:intron | 15.0% |
| !!! | AAATTGATTTTTAAAAACCA+TGG | + | chr2_1:42761911-42761930 | None:intergenic | 15.0% |
| !! | TTCTTCAATTCATTATACAT+CGG | - | chr2_1:42757497-42757516 | Msa0208180:intron | 20.0% |
| !! | ATTAATTAAGTATTTGTGTG+TGG | - | chr2_1:42757545-42757564 | Msa0208180:intron | 20.0% |
| !! | ATAAAATAATGCTTACTCTT+TGG | + | chr2_1:42757711-42757730 | None:intergenic | 20.0% |
| !! | TTATTTATATGTTTCGGATT+GGG | + | chr2_1:42758115-42758134 | None:intergenic | 20.0% |
| !! | TTTATTTATATGTTTCGGAT+TGG | + | chr2_1:42758116-42758135 | None:intergenic | 20.0% |
| !!! | TTTTGAGATTTAAGTTATGT+AGG | - | chr2_1:42758175-42758194 | Msa0208180:intron | 20.0% |
| !!! | TTTAAGTTATGTAGGTTTTA+TGG | - | chr2_1:42758183-42758202 | Msa0208180:intron | 20.0% |
| !!! | TCAATACATTTCAAGAATTT+TGG | - | chr2_1:42758762-42758781 | Msa0208180:intron | 20.0% |
| !! | GTCAACATGTTAAAATAATT+TGG | + | chr2_1:42759561-42759580 | None:intergenic | 20.0% |
| !!! | TCTAAAGATTCTCAATATTT+TGG | - | chr2_1:42759635-42759654 | Msa0208180:intron | 20.0% |
| !! | TTATGAGTTCCATTTATTAA+AGG | + | chr2_1:42759704-42759723 | None:intergenic | 20.0% |
| !! | TAAAATAACATCCACAAATT+AGG | + | chr2_1:42759941-42759960 | None:intergenic | 20.0% |
| !!! | TGTGGATGTTATTTTATTTT+AGG | - | chr2_1:42759945-42759964 | Msa0208180:intron | 20.0% |
| !! | TAAGAAAAGAAAAAGCAAAA+TGG | + | chr2_1:42760107-42760126 | None:intergenic | 20.0% |
| !! | TATTGAAAATGAAATTAGAG+AGG | - | chr2_1:42760553-42760572 | Msa0208180:intron | 20.0% |
| !! | ATTGAAAATGAAATTAGAGA+GGG | - | chr2_1:42760554-42760573 | Msa0208180:intron | 20.0% |
| !! | AACTACATTGATATTTATTC+AGG | - | chr2_1:42761219-42761238 | Msa0208180:intron | 20.0% |
| !!! | TGTTGTTTTCTATACAAAAA+AGG | - | chr2_1:42761351-42761370 | Msa0208180:intron | 20.0% |
| !! | TTACACATAATAGAATTAGA+AGG | + | chr2_1:42761468-42761487 | None:intergenic | 20.0% |
| !! | TCTATTATGTGTAAAACTAT+AGG | - | chr2_1:42761474-42761493 | Msa0208180:intron | 20.0% |
| !! | CTATTATGTGTAAAACTATA+GGG | - | chr2_1:42761475-42761494 | Msa0208180:intron | 20.0% |
| !! | TATTATGTGTAAAACTATAG+GGG | - | chr2_1:42761476-42761495 | Msa0208180:intron | 20.0% |
| !! | TTTAAATTCAAAATGACAGT+TGG | + | chr2_1:42761952-42761971 | None:intergenic | 20.0% |
| !! | TATCTTTATATCTAATCCAA+AGG | - | chr2_1:42762191-42762210 | Msa0208180:intron | 20.0% |
| !!! | AATGATTTGCAATTAACTAT+GGG | - | chr2_1:42763068-42763087 | Msa0208180:five_prime_UTR | 20.0% |
| ! | TTATAGGTGAGTTAGTTAAA+GGG | + | chr2_1:42757253-42757272 | None:intergenic | 25.0% |
| ! | TTTATAGGTGAGTTAGTTAA+AGG | + | chr2_1:42757254-42757273 | None:intergenic | 25.0% |
| ! | TAATGCAATGTGTGATATAT+AGG | + | chr2_1:42757302-42757321 | None:intergenic | 25.0% |
| ! | CTCAATTCTATAAAATACCT+TGG | - | chr2_1:42757336-42757355 | Msa0208180:intron | 25.0% |
| ! | AATAAATCAAAAATCGACCA+AGG | + | chr2_1:42757356-42757375 | None:intergenic | 25.0% |
| ! | TAACATCGGCATTAATAATA+TGG | - | chr2_1:42757611-42757630 | Msa0208180:intron | 25.0% |
| ! | TTTCAAATAGAAACCCTAAT+TGG | - | chr2_1:42757942-42757961 | Msa0208180:intron | 25.0% |
| ! | ATAAAAACTTGTGGTTGATT+TGG | - | chr2_1:42758223-42758242 | Msa0208180:intron | 25.0% |
| ! | ACAGAAGATTCATCAATTAA+TGG | + | chr2_1:42758341-42758360 | None:intergenic | 25.0% |
| !! | TCTCATGTTATATTGACTAA+TGG | - | chr2_1:42758504-42758523 | Msa0208180:intron | 25.0% |
| !! | CTATGAAATTGGAAGTATAA+GGG | + | chr2_1:42758801-42758820 | None:intergenic | 25.0% |
| !! | ACTATGAAATTGGAAGTATA+AGG | + | chr2_1:42758802-42758821 | None:intergenic | 25.0% |
| ! | AAATACCTTTGCTTTCAATT+TGG | - | chr2_1:42758995-42759014 | Msa0208180:intron | 25.0% |
| ! | ACTTATATCTCTCGATAAAA+TGG | + | chr2_1:42759086-42759105 | None:intergenic | 25.0% |
| ! | GATCATAATTCAATACATGA+TGG | + | chr2_1:42759254-42759273 | None:intergenic | 25.0% |
| ! | CATTTCATAAACACATTGAA+TGG | + | chr2_1:42759393-42759412 | None:intergenic | 25.0% |
| ! | GATACTTATTACCTTACTAA+AGG | - | chr2_1:42759991-42760010 | Msa0208180:CDS | 25.0% |
| !! | ATTATAATTTGCGCAAACAT+TGG | + | chr2_1:42760022-42760041 | None:intergenic | 25.0% |
| !! | TTGCAGAAAAAGCATATTAT+GGG | - | chr2_1:42760331-42760350 | Msa0208180:CDS | 25.0% |
| !! | GTAAATGTTTTTCTTTGTTG+TGG | - | chr2_1:42760366-42760385 | Msa0208180:intron | 25.0% |
| ! | GTACACAATAAATAAGTGAT+AGG | + | chr2_1:42760441-42760460 | None:intergenic | 25.0% |
| ! | ACTTATTTATTGTGTACACA+AGG | - | chr2_1:42760444-42760463 | Msa0208180:intron | 25.0% |
| ! | ATAAACGATTCAACTAATGA+GGG | + | chr2_1:42760491-42760510 | None:intergenic | 25.0% |
| ! | AATAAACGATTCAACTAATG+AGG | + | chr2_1:42760492-42760511 | None:intergenic | 25.0% |
| ! | TGTATTCTCTTCTTAATCAA+TGG | - | chr2_1:42760628-42760647 | Msa0208180:intron | 25.0% |
| ! | AAAAGATTACACTGATCAAT+TGG | + | chr2_1:42760813-42760832 | None:intergenic | 25.0% |
| !!! | TAATTCAATTTTCTAGGGAT+AGG | - | chr2_1:42761051-42761070 | Msa0208180:intron | 25.0% |
| !! | AAAGAACAAACCTTGATAAT+AGG | + | chr2_1:42761290-42761309 | None:intergenic | 25.0% |
| ! | CATTTAAACAGAGAATTAAG+AGG | - | chr2_1:42761509-42761528 | Msa0208180:intron | 25.0% |
| ! | AAAATAGTCGAAAAAGAAGA+AGG | + | chr2_1:42761570-42761589 | None:intergenic | 25.0% |
| ! | TAAGAGAAAAATTGACAATC+AGG | - | chr2_1:42762002-42762021 | Msa0208180:CDS | 25.0% |
| ! | AAGAGAAAAATTGACAATCA+GGG | - | chr2_1:42762003-42762022 | Msa0208180:CDS | 25.0% |
| ! | ATAGGTTAAATGATATCACA+CGG | - | chr2_1:42762271-42762290 | Msa0208180:intron | 25.0% |
| ! | ATCATTGAATATGTGTAGTT+GGG | + | chr2_1:42762384-42762403 | None:intergenic | 25.0% |
| ! | TGCATTAGTAATTACTGTAT+GGG | + | chr2_1:42762433-42762452 | None:intergenic | 25.0% |
| ! | ACTCATTTGTTTCGTTTATA+TGG | + | chr2_1:42762470-42762489 | None:intergenic | 25.0% |
| ! | GCACAAAAACAAACAAAAAA+CGG | + | chr2_1:42762610-42762629 | None:intergenic | 25.0% |
| ! | GTAGATAACTAATGATGAAA+AGG | - | chr2_1:42763034-42763053 | Msa0208180:five_prime_UTR | 25.0% |
| !! | CAATGATTTGCAATTAACTA+TGG | - | chr2_1:42763067-42763086 | Msa0208180:five_prime_UTR | 25.0% |
| ! | TTTGATTTCAATTCCGCAAT+GGG | - | chr2_1:42757393-42757412 | Msa0208180:intron | 30.0% |
| !! | TCTGAGTTTAATTGACTTGA+CGG | + | chr2_1:42757442-42757461 | None:intergenic | 30.0% |
| TCGGCATTAATAATATGGAA+AGG | - | chr2_1:42757616-42757635 | Msa0208180:intron | 30.0% | |
| CGGCATTAATAATATGGAAA+GGG | - | chr2_1:42757617-42757636 | Msa0208180:intron | 30.0% | |
| AAAGGGTTAATGTGTATAAC+TGG | - | chr2_1:42757634-42757653 | Msa0208180:intron | 30.0% | |
| ! | ATTATTGTATTGATCCAGAG+TGG | - | chr2_1:42757738-42757757 | Msa0208180:intron | 30.0% |
| ! | TTAGCCTTTATAGGAGAATT+AGG | - | chr2_1:42757916-42757935 | Msa0208180:intron | 30.0% |
| TAGCCTTTATAGGAGAATTA+GGG | - | chr2_1:42757917-42757936 | Msa0208180:intron | 30.0% | |
| AAACCCTAATTCTCCTATAA+AGG | + | chr2_1:42757923-42757942 | None:intergenic | 30.0% | |
| AAATAGAAACCCTAATTGGA+CGG | - | chr2_1:42757946-42757965 | Msa0208180:intron | 30.0% | |
| GTTGTCAAAATGTATGTTGT+TGG | + | chr2_1:42758465-42758484 | None:intergenic | 30.0% | |
| ! | TATATTGACTAATGGAATGC+CGG | - | chr2_1:42758512-42758531 | Msa0208180:intron | 30.0% |
| !! | CTAAACTTGTTGTCAAATAG+CGG | + | chr2_1:42758729-42758748 | None:intergenic | 30.0% |
| CTTTCAATTTGGTTGACTAA+TGG | - | chr2_1:42759006-42759025 | Msa0208180:intron | 30.0% | |
| ACCTATGCTGCTAAATATAA+GGG | + | chr2_1:42759194-42759213 | None:intergenic | 30.0% | |
| TCAGACTTACTAAAGATAAG+GGG | + | chr2_1:42759227-42759246 | None:intergenic | 30.0% | |
| CTCAGACTTACTAAAGATAA+GGG | + | chr2_1:42759228-42759247 | None:intergenic | 30.0% | |
| !! | ATTCTTTGAAGTACAAGACA+GGG | + | chr2_1:42759285-42759304 | None:intergenic | 30.0% |
| !! | AATTCTTTGAAGTACAAGAC+AGG | + | chr2_1:42759286-42759305 | None:intergenic | 30.0% |
| TCTTGTACTTCAAAGAATTG+AGG | - | chr2_1:42759287-42759306 | Msa0208180:intron | 30.0% | |
| CTTGTACTTCAAAGAATTGA+GGG | - | chr2_1:42759288-42759307 | Msa0208180:intron | 30.0% | |
| TAAATATCCACTCATTGTAC+AGG | - | chr2_1:42759475-42759494 | Msa0208180:intron | 30.0% | |
| AAATATCCACTCATTGTACA+GGG | - | chr2_1:42759476-42759495 | Msa0208180:intron | 30.0% | |
| TCATACATACCTTAATCACA+CGG | + | chr2_1:42759523-42759542 | None:intergenic | 30.0% | |
| TAAGTCATATATCTTCGAAG+AGG | - | chr2_1:42759590-42759609 | Msa0208180:intron | 30.0% | |
| !! | TTACTGATTCAATGAACCAT+GGG | + | chr2_1:42759673-42759692 | None:intergenic | 30.0% |
| !! | TTTACTGATTCAATGAACCA+TGG | + | chr2_1:42759674-42759693 | None:intergenic | 30.0% |
| AAGCTGAAGCCTTTAATAAA+TGG | - | chr2_1:42759692-42759711 | Msa0208180:intron | 30.0% | |
| CTTCAGAACATAGAGAATAA+TGG | - | chr2_1:42759725-42759744 | Msa0208180:intron | 30.0% | |
| TAGTATACATATTGATCTGC+TGG | - | chr2_1:42759869-42759888 | Msa0208180:intron | 30.0% | |
| TTCGTATATCACCTAATTTG+TGG | - | chr2_1:42759927-42759946 | Msa0208180:intron | 30.0% | |
| !!! | ATTTTATTTTAGGTCCACGA+AGG | - | chr2_1:42759955-42759974 | Msa0208180:intron | 30.0% |
| ! | CATTGGTTATACCTTTAGTA+AGG | + | chr2_1:42760005-42760024 | None:intergenic | 30.0% |
| ATATTTCAATTGTCAGCTGA+TGG | - | chr2_1:42760051-42760070 | Msa0208180:intron | 30.0% | |
| ACCATTACATTCAGTACTAT+TGG | - | chr2_1:42760139-42760158 | Msa0208180:intron | 30.0% | |
| ! | ACCAATAGTACTGAATGTAA+TGG | + | chr2_1:42760143-42760162 | None:intergenic | 30.0% |
| !! | ATTGGTTTCTGGTTTGTAAT+TGG | - | chr2_1:42760157-42760176 | Msa0208180:intron | 30.0% |
| AATACATAACCGTGCATATA+AGG | + | chr2_1:42760254-42760273 | None:intergenic | 30.0% | |
| !! | GGTTTTGTACAATTATAACC+AGG | - | chr2_1:42760303-42760322 | Msa0208180:intron | 30.0% |
| TGTACAATTATAACCAGGAT+TGG | - | chr2_1:42760308-42760327 | Msa0208180:intron | 30.0% | |
| ! | GTTGCAGAAAAAGCATATTA+TGG | - | chr2_1:42760330-42760349 | Msa0208180:CDS | 30.0% |
| AAGAAGATTAATCAATCTCC+AGG | + | chr2_1:42760602-42760621 | None:intergenic | 30.0% | |
| TTCTCTTCTTAATCAATGGT+TGG | - | chr2_1:42760632-42760651 | Msa0208180:intron | 30.0% | |
| TCTCTTCTTAATCAATGGTT+GGG | - | chr2_1:42760633-42760652 | Msa0208180:intron | 30.0% | |
| ! | ACATTTTATTGAGCAGATGA+AGG | - | chr2_1:42760702-42760721 | Msa0208180:intron | 30.0% |
| AATGCTAATCTCCAGAAAAA+GGG | + | chr2_1:42760766-42760785 | None:intergenic | 30.0% | |
| TAATGCTAATCTCCAGAAAA+AGG | + | chr2_1:42760767-42760786 | None:intergenic | 30.0% | |
| CCATTTACATTGTGGAATAA+TGG | + | chr2_1:42760943-42760962 | None:intergenic | 30.0% | |
| CCATTATTCCACAATGTAAA+TGG | - | chr2_1:42760940-42760959 | Msa0208180:intron | 30.0% | |
| TGTAAATGGTTGTTTGCTTA+TGG | - | chr2_1:42760954-42760973 | Msa0208180:intron | 30.0% | |
| TTGCTTATGGAGATAAATCA+AGG | - | chr2_1:42760967-42760986 | Msa0208180:intron | 30.0% | |
| ACATCAGAAGCAAAAAGAAA+TGG | + | chr2_1:42761145-42761164 | None:intergenic | 30.0% | |
| GTCTGAAAAACCTATTATCA+AGG | - | chr2_1:42761277-42761296 | Msa0208180:intron | 30.0% | |
| CTATTTGAAGAAATCATTGC+TGG | - | chr2_1:42761318-42761337 | Msa0208180:intron | 30.0% | |
| CTTCAACAAGATACTAAAGA+GGG | + | chr2_1:42761414-42761433 | None:intergenic | 30.0% | |
| ACTTCAACAAGATACTAAAG+AGG | + | chr2_1:42761415-42761434 | None:intergenic | 30.0% | |
| ATGTATGTGTAATTGAGAGA+AGG | + | chr2_1:42761444-42761463 | None:intergenic | 30.0% | |
| TTAAACAGAGAATTAAGAGG+AGG | - | chr2_1:42761512-42761531 | Msa0208180:intron | 30.0% | |
| ! | TTTCGACTATTTTCTCTCTT+TGG | - | chr2_1:42761577-42761596 | Msa0208180:intron | 30.0% |
| !! | GAATTGGCTTTATTCCAATA+AGG | + | chr2_1:42761822-42761841 | None:intergenic | 30.0% |
| AGAGAAAAATTGACAATCAG+GGG | - | chr2_1:42762004-42762023 | Msa0208180:CDS | 30.0% | |
| ATTACCCATTAACAAAAACG+TGG | - | chr2_1:42762113-42762132 | Msa0208180:intron | 30.0% | |
| ! | TTGTCCACGTTTTTGTTAAT+GGG | + | chr2_1:42762120-42762139 | None:intergenic | 30.0% |
| ! | TTTGTCCACGTTTTTGTTAA+TGG | + | chr2_1:42762121-42762140 | None:intergenic | 30.0% |
| !! | GAAAAATAGGTTTAGGGTTT+TGG | + | chr2_1:42762237-42762256 | None:intergenic | 30.0% |
| !! | AACCCTAAACCTATTTTTCT+TGG | - | chr2_1:42762238-42762257 | Msa0208180:intron | 30.0% |
| CATCATTGAATATGTGTAGT+TGG | + | chr2_1:42762385-42762404 | None:intergenic | 30.0% | |
| GTGCATTAGTAATTACTGTA+TGG | + | chr2_1:42762434-42762453 | None:intergenic | 30.0% | |
| CATTTGTTTCGTTTATATGG+AGG | + | chr2_1:42762467-42762486 | None:intergenic | 30.0% | |
| GAGATACAGGTAGAAAAAAA+AGG | + | chr2_1:42762494-42762513 | None:intergenic | 30.0% | |
| ! | GATACATGATTTGGAATCAA+GGG | + | chr2_1:42762638-42762657 | None:intergenic | 30.0% |
| ! | AGATACATGATTTGGAATCA+AGG | + | chr2_1:42762639-42762658 | None:intergenic | 30.0% |
| ACAAGATTATCAATGAGTTG+CGG | - | chr2_1:42762666-42762685 | Msa0208180:CDS | 30.0% | |
| AACATCAAACTCTATGAGAT+AGG | + | chr2_1:42762704-42762723 | None:intergenic | 30.0% | |
| CTGTAAGATCAACAATCATA+TGG | + | chr2_1:42762756-42762775 | None:intergenic | 30.0% | |
| ! | AAACAATTCTACCGATTATG+CGG | - | chr2_1:42762778-42762797 | Msa0208180:intron | 30.0% |
| ATGGTAGTTTGATTCTTAAC+TGG | - | chr2_1:42762855-42762874 | Msa0208180:CDS | 30.0% | |
| ! | CATGGTTCTACATAAGATAA+AGG | - | chr2_1:42762931-42762950 | Msa0208180:five_prime_UTR | 30.0% |
| AAAATACTTGTGTACACATC+TGG | + | chr2_1:42762977-42762996 | None:intergenic | 30.0% | |
| ! | GTTTGATTTCAATTCCGCAA+TGG | - | chr2_1:42757392-42757411 | Msa0208180:intron | 35.0% |
| TTCAGGGATGATTGTAACAT+CGG | - | chr2_1:42757597-42757616 | Msa0208180:intron | 35.0% | |
| ATGATGTGATCATGATCACA+CGG | - | chr2_1:42757974-42757993 | Msa0208180:intron | 35.0% | |
| CAAGTCCGAAGATACAATTA+GGG | + | chr2_1:42758000-42758019 | None:intergenic | 35.0% | |
| ATGTATAGCATAGTCTGTAG+TGG | - | chr2_1:42758040-42758059 | Msa0208180:intron | 35.0% | |
| TGTATAGCATAGTCTGTAGT+GGG | - | chr2_1:42758041-42758060 | Msa0208180:intron | 35.0% | |
| GAGCTACGTTACTATGAAAT+TGG | + | chr2_1:42758812-42758831 | None:intergenic | 35.0% | |
| !! | TTGAAAGCAAAGGTATTTCC+AGG | + | chr2_1:42758993-42759012 | None:intergenic | 35.0% |
| GTCAACCAAATTGAAAGCAA+AGG | + | chr2_1:42759003-42759022 | None:intergenic | 35.0% | |
| GAGATATAAGTACAAGCTAC+TGG | - | chr2_1:42759095-42759114 | Msa0208180:intron | 35.0% | |
| GCTGCTAAATATAAGGGAAA+AGG | + | chr2_1:42759188-42759207 | None:intergenic | 35.0% | |
| TCCCTTATATTTAGCAGCAT+AGG | - | chr2_1:42759190-42759209 | Msa0208180:intron | 35.0% | |
| CACCTATGCTGCTAAATATA+AGG | + | chr2_1:42759195-42759214 | None:intergenic | 35.0% | |
| AGACTTACTAAAGATAAGGG+GGG | + | chr2_1:42759225-42759244 | None:intergenic | 35.0% | |
| CAGACTTACTAAAGATAAGG+GGG | + | chr2_1:42759226-42759245 | None:intergenic | 35.0% | |
| CCTCAGACTTACTAAAGATA+AGG | + | chr2_1:42759229-42759248 | None:intergenic | 35.0% | |
| CCTTATCTTTAGTAAGTCTG+AGG | - | chr2_1:42759226-42759245 | Msa0208180:intron | 35.0% | |
| TTAATCACACGGTGAACAAT+TGG | + | chr2_1:42759512-42759531 | None:intergenic | 35.0% | |
| AATTGTTCACCGTGTGATTA+AGG | - | chr2_1:42759511-42759530 | Msa0208180:intron | 35.0% | |
| !! | AGAGGTGTTATGCACATAAA+TGG | - | chr2_1:42759608-42759627 | Msa0208180:intron | 35.0% |
| !! | TACTGATTCAATGAACCATG+GGG | + | chr2_1:42759672-42759691 | None:intergenic | 35.0% |
| ACAAGTTTGCATGTTGTACT+TGG | - | chr2_1:42759765-42759784 | Msa0208180:intron | 35.0% | |
| ! | ATTGATAATTGCAGAACCGA+AGG | - | chr2_1:42759816-42759835 | Msa0208180:intron | 35.0% |
| CTGATGGTTATCGCAATATA+CGG | - | chr2_1:42760067-42760086 | Msa0208180:intron | 35.0% | |
| !! | CATTCAGTACTATTGGTTTC+TGG | - | chr2_1:42760146-42760165 | Msa0208180:intron | 35.0% |
| TGTTCGATCATTGGATGTTA+AGG | + | chr2_1:42760222-42760241 | None:intergenic | 35.0% | |
| AAACGAGTATGTTCGATCAT+TGG | + | chr2_1:42760231-42760250 | None:intergenic | 35.0% | |
| TACTCGTTTCCTTATATGCA+CGG | - | chr2_1:42760242-42760261 | Msa0208180:intron | 35.0% | |
| TATGCACGGTTATGTATTTC+AGG | - | chr2_1:42760256-42760275 | Msa0208180:intron | 35.0% | |
| ACAATAATCCTACAGATGAC+AGG | - | chr2_1:42760281-42760300 | Msa0208180:intron | 35.0% | |
| CAATAATCCTACAGATGACA+GGG | - | chr2_1:42760282-42760301 | Msa0208180:intron | 35.0% | |
| GAGAATCCATTAAAAGCTAG+AGG | - | chr2_1:42760517-42760536 | Msa0208180:intron | 35.0% | |
| !!! | CAAGATCCTCTAGCTTTTAA+TGG | + | chr2_1:42760526-42760545 | None:intergenic | 35.0% |
| TAATCAATCTCCAGGTATTC+AGG | + | chr2_1:42760594-42760613 | None:intergenic | 35.0% | |
| TTAATCAATGGTTGGGATGT+TGG | - | chr2_1:42760640-42760659 | Msa0208180:intron | 35.0% | |
| GCAAACAACCATTTACATTG+TGG | + | chr2_1:42760951-42760970 | None:intergenic | 35.0% | |
| !! | ATTTTCTAGGGATAGGAATG+AGG | - | chr2_1:42761058-42761077 | Msa0208180:intron | 35.0% |
| ATGAGGAGCTAGTTAATATC+TGG | - | chr2_1:42761075-42761094 | Msa0208180:intron | 35.0% | |
| AAGGAGAATGCGATTGAAAA+AGG | + | chr2_1:42761551-42761570 | None:intergenic | 35.0% | |
| !! | GGTTTTGACATCAAAGGAAT+AGG | - | chr2_1:42761704-42761723 | Msa0208180:intron | 35.0% |
| TTTCATCATTGCCTCCTTAT+TGG | - | chr2_1:42761805-42761824 | Msa0208180:intron | 35.0% | |
| !! | TTGGCTTTATTCCAATAAGG+AGG | + | chr2_1:42761819-42761838 | None:intergenic | 35.0% |
| !! | GAATTATTGTTTGATGGCGT+TGG | - | chr2_1:42761851-42761870 | Msa0208180:intron | 35.0% |
| GTTTCCTCATTACTAATCCT+TGG | + | chr2_1:42761877-42761896 | None:intergenic | 35.0% | |
| AAAATTGACAATCAGGGGAA+TGG | - | chr2_1:42762009-42762028 | Msa0208180:CDS | 35.0% | |
| CTTTGCTTAGAAAACCAATG+AGG | + | chr2_1:42762054-42762073 | None:intergenic | 35.0% | |
| CGCCAAGAAAAATAGGTTTA+GGG | + | chr2_1:42762243-42762262 | None:intergenic | 35.0% | |
| !! | CCTAAACCTATTTTTCTTGG+CGG | - | chr2_1:42762241-42762260 | Msa0208180:intron | 35.0% |
| TAATTGCCGCCAAGAAAAAT+AGG | + | chr2_1:42762250-42762269 | None:intergenic | 35.0% | |
| !! | CTGATATGAATTGGGTTAGT+TGG | + | chr2_1:42762351-42762370 | None:intergenic | 35.0% |
| ATGGAAGGCTGATATGAATT+GGG | + | chr2_1:42762359-42762378 | None:intergenic | 35.0% | |
| TTTATATGGAGGCAGAGATT+AGG | + | chr2_1:42762456-42762475 | None:intergenic | 35.0% | |
| TTGGACTTTATAGTGACACA+TGG | + | chr2_1:42762534-42762553 | None:intergenic | 35.0% | |
| ! | AATAGTAAGAGTGCAGATCT+TGG | + | chr2_1:42762553-42762572 | None:intergenic | 35.0% |
| TCCAAATCATGTATCTGAGT+TGG | - | chr2_1:42762643-42762662 | Msa0208180:CDS | 35.0% | |
| TCCAACTCAGATACATGATT+TGG | + | chr2_1:42762647-42762666 | None:intergenic | 35.0% | |
| AATGAGTTGCGGTGAAATAT+AGG | - | chr2_1:42762677-42762696 | Msa0208180:CDS | 35.0% | |
| !! | GTTGAGCTCGATATTTTTGT+GGG | - | chr2_1:42762800-42762819 | Msa0208180:intron | 35.0% |
| ATTAAGGTTGAGGTTACTGA+TGG | - | chr2_1:42762836-42762855 | Msa0208180:CDS | 35.0% | |
| ! | TTTTATCACCTCAGCATCAT+CGG | + | chr2_1:42762906-42762925 | None:intergenic | 35.0% |
| TGAGGTGATAAAACAGTTCA+TGG | - | chr2_1:42762913-42762932 | Msa0208180:exon | 35.0% | |
| TGCGGAATTGAAATCAAACG+AGG | + | chr2_1:42757391-42757410 | None:intergenic | 40.0% | |
| ATTTCAATTCCGCAATGGGT+TGG | - | chr2_1:42757397-42757416 | Msa0208180:intron | 40.0% | |
| ! | TTTCAATTCCGCAATGGGTT+GGG | - | chr2_1:42757398-42757417 | Msa0208180:intron | 40.0% |
| ACATACCAAGAGTGATGACT+TGG | + | chr2_1:42757476-42757495 | None:intergenic | 40.0% | |
| TATAACTGGAACTGAATCGC+CGG | - | chr2_1:42757648-42757667 | Msa0208180:intron | 40.0% | |
| ! | TGTTGTTCTTTCTGGAAGCA+TGG | - | chr2_1:42757675-42757694 | Msa0208180:intron | 40.0% |
| ! | ATGCTTACTCTTTGGAAACC+AGG | + | chr2_1:42757703-42757722 | None:intergenic | 40.0% |
| TGGAACTTGACCTTGATTGA+AGG | - | chr2_1:42757758-42757777 | Msa0208180:intron | 40.0% | |
| ATCTCTCAAGCCTTCAATCA+AGG | + | chr2_1:42757771-42757790 | None:intergenic | 40.0% | |
| TTGATTGAAGGCTTGAGAGA+TGG | - | chr2_1:42757770-42757789 | Msa0208180:intron | 40.0% | |
| TGATTGAAGGCTTGAGAGAT+GGG | - | chr2_1:42757771-42757790 | Msa0208180:intron | 40.0% | |
| !! | AGTCACGAGTTAGCCTTTAT+AGG | - | chr2_1:42757907-42757926 | Msa0208180:intron | 40.0% |
| TCATGAAAGCCGTCCAATTA+GGG | + | chr2_1:42757958-42757977 | None:intergenic | 40.0% | |
| ATCATGAAAGCCGTCCAATT+AGG | + | chr2_1:42757959-42757978 | None:intergenic | 40.0% | |
| GCAAGTCCGAAGATACAATT+AGG | + | chr2_1:42758001-42758020 | None:intergenic | 40.0% | |
| ! | ATTGTATCTTCGGACTTGCT+TGG | - | chr2_1:42758002-42758021 | Msa0208180:intron | 40.0% |
| ! | TTGTATCTTCGGACTTGCTT+GGG | - | chr2_1:42758003-42758022 | Msa0208180:intron | 40.0% |
| ! | CTGTTGGTCTCTTGTTGATA+GGG | - | chr2_1:42758084-42758103 | Msa0208180:intron | 40.0% |
| !! | TGTGGTTGATTTGGTCTTAC+AGG | - | chr2_1:42758232-42758251 | Msa0208180:intron | 40.0% |
| !! | GTGGTTGATTTGGTCTTACA+GGG | - | chr2_1:42758233-42758252 | Msa0208180:intron | 40.0% |
| TTTGTTCTTGACCATGAGCA+AGG | - | chr2_1:42758262-42758281 | Msa0208180:intron | 40.0% | |
| ACAATGTCTCCTGAACGAAT+TGG | + | chr2_1:42758290-42758309 | None:intergenic | 40.0% | |
| AATTCGTTCAGGAGACATTG+TGG | - | chr2_1:42758289-42758308 | Msa0208180:intron | 40.0% | |
| ACATCAGTGCTATATCACTG+TGG | + | chr2_1:42758618-42758637 | None:intergenic | 40.0% | |
| !! | AGAATTTTGGTGACATCGCT+AGG | - | chr2_1:42758775-42758794 | Msa0208180:intron | 40.0% |
| ! | TGTTGTTTAGAGCCTTACTG+AGG | - | chr2_1:42758869-42758888 | Msa0208180:intron | 40.0% |
| GACTTACTAAAGATAAGGGG+GGG | + | chr2_1:42759224-42759243 | None:intergenic | 40.0% | |
| AGTACAAGACAGGGAGAAAT+AGG | + | chr2_1:42759276-42759295 | None:intergenic | 40.0% | |
| ! | ACACATTGAATGGCCTTTTC+TGG | + | chr2_1:42759383-42759402 | None:intergenic | 40.0% |
| TGTTTATGAAATGTGCGCGT+TGG | - | chr2_1:42759400-42759419 | Msa0208180:intron | 40.0% | |
| !! | TTGGTAATCATTTTCCCCCA+TGG | - | chr2_1:42759654-42759673 | Msa0208180:intron | 40.0% |
| ! | ACTGATTCAATGAACCATGG+GGG | + | chr2_1:42759671-42759690 | None:intergenic | 40.0% |
| AAGTTCATGTAGTGAGCCTT+CGG | + | chr2_1:42759835-42759854 | None:intergenic | 40.0% | |
| TCGATCATTGGATGTTAAGG+AGG | + | chr2_1:42760219-42760238 | None:intergenic | 40.0% | |
| TACAAAACCCTGTCATCTGT+AGG | + | chr2_1:42760292-42760311 | None:intergenic | 40.0% | |
| CATATTATGGGAAGAGCTGT+CGG | - | chr2_1:42760343-42760362 | Msa0208180:intron | 40.0% | |
| ATATTATGGGAAGAGCTGTC+GGG | - | chr2_1:42760344-42760363 | Msa0208180:intron | 40.0% | |
| AAAGCTAGAGGATCTTGTCT+TGG | - | chr2_1:42760529-42760548 | Msa0208180:intron | 40.0% | |
| TTTCATGTCTCCTGAATACC+TGG | - | chr2_1:42760581-42760600 | Msa0208180:intron | 40.0% | |
| ! | TACACATACCTCCCTTTTTC+TGG | - | chr2_1:42760752-42760771 | Msa0208180:intron | 40.0% |
| TAGTCCTGTTTGTACTCTGT+TGG | - | chr2_1:42760853-42760872 | Msa0208180:intron | 40.0% | |
| AGTCCTGTTTGTACTCTGTT+GGG | - | chr2_1:42760854-42760873 | Msa0208180:intron | 40.0% | |
| AAACCCAACAGAGTACAAAC+AGG | + | chr2_1:42760860-42760879 | None:intergenic | 40.0% | |
| TTCTTCCCATTTAGCTATCC+TGG | - | chr2_1:42760909-42760928 | Msa0208180:intron | 40.0% | |
| TTGCACCAGGATAGCTAAAT+GGG | + | chr2_1:42760917-42760936 | None:intergenic | 40.0% | |
| TTTGCACCAGGATAGCTAAA+TGG | + | chr2_1:42760918-42760937 | None:intergenic | 40.0% | |
| !!! | GGAATAATGGATTTTGCACC+AGG | + | chr2_1:42760930-42760949 | None:intergenic | 40.0% |
| ! | TTCAGGTTCTTACCTTATGC+TGG | - | chr2_1:42761236-42761255 | Msa0208180:intron | 40.0% |
| ! | GTTCTTACCTTATGCTGGTT+GGG | - | chr2_1:42761241-42761260 | Msa0208180:intron | 40.0% |
| TCCTTGCAGTATGTACTAGT+AGG | - | chr2_1:42761666-42761685 | Msa0208180:intron | 40.0% | |
| TCCTACTAGTACATACTGCA+AGG | + | chr2_1:42761670-42761689 | None:intergenic | 40.0% | |
| !! | TATGTACTAGTAGGAGCACT+GGG | - | chr2_1:42761675-42761694 | Msa0208180:intron | 40.0% |
| ! | TTGGCCAAGGATTAGTAATG+AGG | - | chr2_1:42761870-42761889 | Msa0208180:intron | 40.0% |
| CCGCCAAGAAAAATAGGTTT+AGG | + | chr2_1:42762244-42762263 | None:intergenic | 40.0% | |
| TTTCTTGGCGGCAATTACAT+AGG | - | chr2_1:42762253-42762272 | Msa0208180:intron | 40.0% | |
| !! | GGTTAGTTGGAGAGTTTTGA+GGG | + | chr2_1:42762338-42762357 | None:intergenic | 40.0% |
| GATGGAAGGCTGATATGAAT+TGG | + | chr2_1:42762360-42762379 | None:intergenic | 40.0% | |
| GAATATGTGTAGTTGGGAGA+TGG | + | chr2_1:42762378-42762397 | None:intergenic | 40.0% | |
| !! | GGTTGAGCTCGATATTTTTG+TGG | - | chr2_1:42762799-42762818 | Msa0208180:intron | 40.0% |
| ! | GGGAAAGCAGATGTTGATTA+AGG | - | chr2_1:42762820-42762839 | Msa0208180:intron | 40.0% |
| ! | GCAGATGTTGATTAAGGTTG+AGG | - | chr2_1:42762826-42762845 | Msa0208180:intron | 40.0% |
| TTGCACCAAGTCATCACTCT+TGG | - | chr2_1:42757468-42757487 | Msa0208180:intron | 45.0% | |
| CCAGAAAGAACAACAACGAC+CGG | + | chr2_1:42757670-42757689 | None:intergenic | 45.0% | |
| ATCAAGGTCAAGTTCCACTC+TGG | + | chr2_1:42757755-42757774 | None:intergenic | 45.0% | |
| ! | CTGAGAGAGGAGAGGTTTTA+TGG | - | chr2_1:42757860-42757879 | Msa0208180:intron | 45.0% |
| CACGGCCCTAATTGTATCTT+CGG | - | chr2_1:42757992-42758011 | Msa0208180:intron | 45.0% | |
| CCTATCAACAAGAGACCAAC+AGG | + | chr2_1:42758086-42758105 | None:intergenic | 45.0% | |
| ! | CCTGTTGGTCTCTTGTTGAT+AGG | - | chr2_1:42758083-42758102 | Msa0208180:intron | 45.0% |
| ! | GGTCTCTTGTTGATAGGGTT+TGG | - | chr2_1:42758089-42758108 | Msa0208180:intron | 45.0% |
| ACGAATTGGATCCTTGCTCA+TGG | + | chr2_1:42758276-42758295 | None:intergenic | 45.0% | |
| AGCAAGGATCCAATTCGTTC+AGG | - | chr2_1:42758278-42758297 | Msa0208180:intron | 45.0% | |
| ATGCCGGTCTAGGTTGTTTA+TGG | - | chr2_1:42758528-42758547 | Msa0208180:intron | 45.0% | |
| TGCCGGTCTAGGTTGTTTAT+GGG | - | chr2_1:42758529-42758548 | Msa0208180:intron | 45.0% | |
| GACCCATAAACAACCTAGAC+CGG | + | chr2_1:42758534-42758553 | None:intergenic | 45.0% | |
| TTGTACCCAACAGTGTGTCA+CGG | - | chr2_1:42758647-42758666 | Msa0208180:intron | 45.0% | |
| ! | ATATCACGCTAGCCTCAGTA+AGG | + | chr2_1:42758884-42758903 | None:intergenic | 45.0% |
| ! | CCAGGTAGTGGTTGTGTTAT+AGG | + | chr2_1:42758975-42758994 | None:intergenic | 45.0% |
| CCTATAACACAACCACTACC+TGG | - | chr2_1:42758972-42758991 | Msa0208180:intron | 45.0% | |
| !! | GCAAAGGTATTTCCAGGTAG+TGG | + | chr2_1:42758987-42759006 | None:intergenic | 45.0% |
| !!! | TGAAATGTGCGCGTTGGTTT+TGG | - | chr2_1:42759406-42759425 | Msa0208180:intron | 45.0% |
| !! | GCTTTTTCTGCAACCAATCC+TGG | + | chr2_1:42760324-42760343 | None:intergenic | 45.0% |
| GTTGGCTAACCTCATTGGTA+CGG | - | chr2_1:42760658-42760677 | Msa0208180:intron | 45.0% | |
| GCTAATCTCCAGAAAAAGGG+AGG | + | chr2_1:42760763-42760782 | None:intergenic | 45.0% | |
| GGTTCTTACCTTATGCTGGT+TGG | - | chr2_1:42761240-42761259 | Msa0208180:intron | 45.0% | |
| ATTGTAGCCCAACCAGCATA+AGG | + | chr2_1:42761251-42761270 | None:intergenic | 45.0% | |
| ! | GTATGTACTAGTAGGAGCAC+TGG | - | chr2_1:42761674-42761693 | Msa0208180:intron | 45.0% |
| !! | ATGTACTAGTAGGAGCACTG+GGG | - | chr2_1:42761676-42761695 | Msa0208180:intron | 45.0% |
| !!! | GCTGCTGGTTTTGACATCAA+AGG | - | chr2_1:42761698-42761717 | Msa0208180:intron | 45.0% |
| !! | GGAAACTGCTTTTGTTGCCA+TGG | - | chr2_1:42761891-42761910 | Msa0208180:intron | 45.0% |
| ATTGACAATCAGGGGAATGG+AGG | - | chr2_1:42762012-42762031 | Msa0208180:CDS | 45.0% | |
| !!! | GGGTTAGTTGGAGAGTTTTG+AGG | + | chr2_1:42762339-42762358 | None:intergenic | 45.0% |
| ATGTGTAGTTGGGAGATGGA+AGG | + | chr2_1:42762374-42762393 | None:intergenic | 45.0% | |
| ATGGGTAGTAGTTGCTGCAT+GGG | + | chr2_1:42762415-42762434 | None:intergenic | 45.0% | |
| TATGGGTAGTAGTTGCTGCA+TGG | + | chr2_1:42762416-42762435 | None:intergenic | 45.0% | |
| !! | ACACTTGCTGTGAGAGATAC+AGG | + | chr2_1:42762507-42762526 | None:intergenic | 45.0% |
| ! | TGATTTGGAATCAAGGGTGC+TGG | + | chr2_1:42762632-42762651 | None:intergenic | 45.0% |
| ATCGAGCTCAACCGCATAAT+CGG | + | chr2_1:42762792-42762811 | None:intergenic | 45.0% | |
| !!! | TTTAATTTATTTATATGTTT+CGG | + | chr2_1:42758121-42758140 | None:intergenic | 5.0% |
| TGCTGTGGATCCCTGTTTAC+GGG | + | chr2_1:42757224-42757243 | None:intergenic | 50.0% | |
| GTGCTGTGGATCCCTGTTTA+CGG | + | chr2_1:42757225-42757244 | None:intergenic | 50.0% | |
| GTTAAAGGGAGACAGTGCTG+TGG | + | chr2_1:42757239-42757258 | None:intergenic | 50.0% | |
| ! | GTCTGAAACCCAACCCATTG+CGG | + | chr2_1:42757409-42757428 | None:intergenic | 50.0% |
| ! | CCGGTCGTTGTTGTTCTTTC+TGG | - | chr2_1:42757667-42757686 | Msa0208180:intron | 50.0% |
| ! | CTTTCTGGAAGCATGGAACC+TGG | - | chr2_1:42757682-42757701 | Msa0208180:intron | 50.0% |
| ! | TTGATCGTCGGAGTGTTTCG+TGG | + | chr2_1:42757822-42757841 | None:intergenic | 50.0% |
| CGGTTCACAGACTTGATCGT+CGG | + | chr2_1:42757834-42757853 | None:intergenic | 50.0% | |
| ACTTGCTTGGGTGTGCATCT+AGG | - | chr2_1:42758015-42758034 | Msa0208180:intron | 50.0% | |
| CTTGCTTGGGTGTGCATCTA+GGG | - | chr2_1:42758016-42758035 | Msa0208180:intron | 50.0% | |
| GACTAATGGAATGCCGGTCT+AGG | - | chr2_1:42758518-42758537 | Msa0208180:intron | 50.0% | |
| GCTATATCACTGTGGCGTAG+CGG | + | chr2_1:42758610-42758629 | None:intergenic | 50.0% | |
| TGTACCCAACAGTGTGTCAC+GGG | - | chr2_1:42758648-42758667 | Msa0208180:intron | 50.0% | |
| TTGTCCCGTGACACACTGTT+GGG | + | chr2_1:42758655-42758674 | None:intergenic | 50.0% | |
| ATTGTCCCGTGACACACTGT+TGG | + | chr2_1:42758656-42758675 | None:intergenic | 50.0% | |
| TCACGTCCCTGTACAATGAG+TGG | + | chr2_1:42759485-42759504 | None:intergenic | 50.0% | |
| GGTCCACGAAGGTCAAGATA+CGG | - | chr2_1:42759966-42759985 | Msa0208180:CDS | 50.0% | |
| CTTCCGTATCTTGACCTTCG+TGG | + | chr2_1:42759972-42759991 | None:intergenic | 50.0% | |
| ! | GGGATGTTGGCTAACCTCAT+TGG | - | chr2_1:42760653-42760672 | Msa0208180:intron | 50.0% |
| CTCTCGTTACCGTACCAATG+AGG | + | chr2_1:42760670-42760689 | None:intergenic | 50.0% | |
| AGCATTATCTGCCAGTCAGC+AGG | - | chr2_1:42760780-42760799 | Msa0208180:intron | 50.0% | |
| GCATTATCTGCCAGTCAGCA+GGG | - | chr2_1:42760781-42760800 | Msa0208180:intron | 50.0% | |
| TTGGTTGAAACCCTGCTGAC+TGG | + | chr2_1:42760794-42760813 | None:intergenic | 50.0% | |
| !! | TTGTTTGATGGCGTTGGCCA+AGG | - | chr2_1:42761857-42761876 | Msa0208180:intron | 50.0% |
| GCACTTCAAGGCTACCTCAT+TGG | - | chr2_1:42762037-42762056 | Msa0208180:CDS | 50.0% | |
| ATCATCGGCGGCTCTCTTTA+CGG | + | chr2_1:42762891-42762910 | None:intergenic | 50.0% | |
| TATCACCTCAGCATCATCGG+CGG | + | chr2_1:42762903-42762922 | None:intergenic | 50.0% | |
| !! | TATGGGTGTTGACTATCCGC+TGG | - | chr2_1:42763085-42763104 | Msa0208180:five_prime_UTR | 50.0% |
| ! | GAGAGATGGGAGATTAGCCG+AGG | - | chr2_1:42757784-42757803 | Msa0208180:intron | 55.0% |
| ! | GATGGGAGATTAGCCGAGGA+CGG | - | chr2_1:42757788-42757807 | Msa0208180:intron | 55.0% |
| ! | ATCGTCGGAGTGTTTCGTGG+AGG | + | chr2_1:42757819-42757838 | None:intergenic | 55.0% |
| TGAACCGTCGTGACTGAGAG+AGG | - | chr2_1:42757847-42757866 | Msa0208180:intron | 55.0% | |
| CTCTCCTCTCTCAGTCACGA+CGG | + | chr2_1:42757854-42757873 | None:intergenic | 55.0% | |
| TACCTTCGCGGAAGACCTGT+TGG | - | chr2_1:42758068-42758087 | Msa0208180:intron | 55.0% | |
| ! | TCACTGTGGCGTAGCGGAAT+TGG | + | chr2_1:42758604-42758623 | None:intergenic | 55.0% |
| GACAATCAGGGGAATGGAGG+AGG | - | chr2_1:42762015-42762034 | Msa0208180:CDS | 55.0% | |
| !! | GGAATGGAGGAGGCACTTCA+AGG | - | chr2_1:42762025-42762044 | Msa0208180:CDS | 55.0% |
| CGTCGTGACTGAGAGAGGAG+AGG | - | chr2_1:42757852-42757871 | Msa0208180:intron | 60.0% | |
| !! | GTAGTGGGTCGCTACCTTCG+CGG | - | chr2_1:42758056-42758075 | Msa0208180:intron | 60.0% |
| GACCAACAGGTCTTCCGCGA+AGG | + | chr2_1:42758073-42758092 | None:intergenic | 60.0% | |
| AGCGGCAGTAGTGACGCTAG+AGG | + | chr2_1:42758711-42758730 | None:intergenic | 60.0% | |
| !! | AGTAGGAGCACTGGGGCTGC+TGG | - | chr2_1:42761683-42761702 | Msa0208180:intron | 65.0% |
| GAGAGCCGCCGATGATGCTG+AGG | - | chr2_1:42762895-42762914 | Msa0208180:exon | 65.0% | |
| !! | CGTGGAGGCGCTTCCGTCCT+CGG | + | chr2_1:42757804-42757823 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42757215 | 42763109 | 42757215 | ID=Msa0208180;Name=Msa0208180 |
| chr2_1 | mRNA | 42757215 | 42763109 | 42757215 | ID=Msa0208180-mRNA-1;Parent=Msa0208180;Name=Msa0208180-mRNA-1;_AED=0.23;_eAED=0.23;_QI=196|0.87|0.77|0.88|0.75|0.88|9|0|191 |
| chr2_1 | exon | 42757215 | 42757286 | 42757215 | ID=Msa0208180-mRNA-1:exon:12765;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42758641 | 42758649 | 42758641 | ID=Msa0208180-mRNA-1:exon:12764;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42759026 | 42759083 | 42759026 | ID=Msa0208180-mRNA-1:exon:12763;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42759959 | 42760046 | 42759959 | ID=Msa0208180-mRNA-1:exon:12762;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42760312 | 42760357 | 42760312 | ID=Msa0208180-mRNA-1:exon:12761;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42760792 | 42760827 | 42760792 | ID=Msa0208180-mRNA-1:exon:12760;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42761999 | 42762070 | 42761999 | ID=Msa0208180-mRNA-1:exon:12759;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42762610 | 42762722 | 42762610 | ID=Msa0208180-mRNA-1:exon:12758;Parent=Msa0208180-mRNA-1 |
| chr2_1 | exon | 42762835 | 42763109 | 42762835 | ID=Msa0208180-mRNA-1:exon:12757;Parent=Msa0208180-mRNA-1 |
| chr2_1 | five_prime_UTR | 42762914 | 42763109 | 42762914 | ID=Msa0208180-mRNA-1:five_prime_utr;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42762835 | 42762913 | 42762835 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42762610 | 42762722 | 42762610 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42761999 | 42762070 | 42761999 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42760792 | 42760827 | 42760792 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42760312 | 42760357 | 42760312 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42759959 | 42760046 | 42759959 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42759026 | 42759083 | 42759026 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42758641 | 42758649 | 42758641 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| chr2_1 | CDS | 42757215 | 42757286 | 42757215 | ID=Msa0208180-mRNA-1:cds;Parent=Msa0208180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
