Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208300 | XP_039686516.1 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.13e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208300 | sp|Q5RC30|SC11C_PONAB | 58.523 | 176 | 71 | 2 | 6 | 180 | 17 | 191 | 1.77e-69 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208300 | I3SCN5 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 5.39e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032580 | Msa0208300 | 0.805428 | 1.341247e-49 | -8.615850e-47 |
| Msa0037540 | Msa0208300 | -0.828879 | 7.031851e-55 | -8.615850e-47 |
| Msa0037590 | Msa0208300 | -0.826893 | 2.112687e-54 | -8.615850e-47 |
| Msa0129190 | Msa0208300 | -0.807620 | 4.624837e-50 | -8.615850e-47 |
| Msa0137800 | Msa0208300 | 0.806787 | 6.944075e-50 | -8.615850e-47 |
| Msa0159340 | Msa0208300 | 0.805233 | 1.473728e-49 | -8.615850e-47 |
| Msa0172970 | Msa0208300 | 0.817674 | 2.916791e-52 | -8.615850e-47 |
| Msa0208180 | Msa0208300 | 0.816293 | 5.957939e-52 | -8.615850e-47 |
| Msa0208300 | Msa0208310 | 0.884602 | 1.666202e-71 | -8.615850e-47 |
| Msa0208300 | Msa0215590 | 0.806878 | 6.641858e-50 | -8.615850e-47 |
| Msa0208300 | Msa0229360 | 0.806545 | 7.807737e-50 | -8.615850e-47 |
| Msa0208300 | Msa0270170 | -0.821149 | 4.706817e-53 | -8.615850e-47 |
| Msa0208300 | Msa0296820 | 0.810026 | 1.414523e-50 | -8.615850e-47 |
| Msa0208300 | Msa0333650 | 0.810664 | 1.029932e-50 | -8.615850e-47 |
| Msa0208300 | Msa0372340 | 0.801763 | 7.723106e-49 | -8.615850e-47 |
| Msa0208300 | Msa0382400 | 0.816620 | 5.035376e-52 | -8.615850e-47 |
| Msa0208300 | Msa0387370 | 0.803622 | 3.192814e-49 | -8.615850e-47 |
| Msa0208300 | Msa0587030 | 0.811590 | 6.487918e-51 | -8.615850e-47 |
| Msa0208300 | Msa0616240 | 0.822824 | 1.925896e-53 | -8.615850e-47 |
| Msa0208300 | Msa0626850 | 0.813124 | 2.999556e-51 | -8.615850e-47 |
| Msa0208300 | Msa0664970 | 0.817098 | 3.932005e-52 | -8.615850e-47 |
| Msa0208300 | Msa0699570 | 0.824826 | 6.539763e-54 | -8.615850e-47 |
| Msa0208300 | Msa0790440 | -0.800754 | 1.242643e-48 | -8.615850e-47 |
| Msa0208300 | Msa0825870 | 0.811176 | 7.978571e-51 | -8.615850e-47 |
| Msa0208300 | Msa0826760 | 0.806019 | 1.007983e-49 | -8.615850e-47 |
| Msa0208300 | Msa0865330 | 0.824670 | 7.116944e-54 | -8.615850e-47 |
| Msa0208300 | Msa0880810 | 0.814924 | 1.202421e-51 | -8.615850e-47 |
| Msa0208300 | Msa0943190 | 0.809369 | 1.957756e-50 | -8.615850e-47 |
| Msa0208300 | Msa0944610 | 0.809977 | 1.449141e-50 | -8.615850e-47 |
| Msa0208300 | Msa1064250 | 0.804927 | 1.707870e-49 | -8.615850e-47 |
| Msa0208300 | Msa1073490 | 0.801936 | 7.114764e-49 | -8.615850e-47 |
| Msa0208300 | Msa1109090 | 0.802973 | 4.350386e-49 | -8.615850e-47 |
| Msa0208300 | Msa1127190 | 0.809284 | 2.041951e-50 | -8.615850e-47 |
| Msa0208300 | Msa1152920 | 0.801517 | 8.675236e-49 | -8.615850e-47 |
| Msa0208300 | Msa1169080 | 0.800856 | 1.184455e-48 | -8.615850e-47 |
| Msa0208300 | Msa1206850 | 0.816634 | 4.999503e-52 | -8.615850e-47 |
| Msa0208300 | Msa1218580 | 0.814954 | 1.183999e-51 | -8.615850e-47 |
| Msa0208300 | Msa1225100 | 0.839356 | 1.663858e-57 | -8.615850e-47 |
| Msa0208300 | Msa1262020 | 0.812031 | 5.200257e-51 | -8.615850e-47 |
| Msa0208300 | Msa1329870 | 0.839232 | 1.791843e-57 | -8.615850e-47 |
| Msa0208300 | Msa1355890 | 0.827752 | 1.315288e-54 | -8.615850e-47 |
| Msa0208300 | Msa1391550 | 0.800949 | 1.133650e-48 | -8.615850e-47 |
| Msa0208300 | Msa1403530 | -0.800346 | 1.504999e-48 | -8.615850e-47 |
| Msa0208300 | Msa1405220 | 0.846876 | 1.648386e-59 | -8.615850e-47 |
| Msa0208300 | Msa1418280 | 0.806421 | 8.295228e-50 | -8.615850e-47 |
| Msa0208300 | Msa1436600 | 0.819477 | 1.137645e-52 | -8.615850e-47 |
| Msa0208300 | Msa1454450 | 0.813130 | 2.991476e-51 | -8.615850e-47 |
| Msa0208300 | Msa1457160 | 0.805304 | 1.424252e-49 | -8.615850e-47 |
| Msa0208300 | Msa1461550 | 0.805549 | 1.265363e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208300 | MtrunA17_Chr2g0307071 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.04e-130 | 363 |
| Msa0208300 | MtrunA17_Chr2g0332921 | 76.667 | 180 | 42 | 0 | 1 | 180 | 1 | 180 | 1.91e-100 | 287 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208300 | AT1G52600.1 | 74.444 | 180 | 46 | 0 | 1 | 180 | 1 | 180 | 1.60e-98 | 282 |
| Msa0208300 | AT3G15710.1 | 72.222 | 180 | 50 | 0 | 1 | 180 | 1 | 180 | 4.42e-93 | 269 |
Find 69 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGTTGTTGTTGTTCTTTC+TGG | 0.008292 | 2_1:+42865190 | Msa0208300:CDS |
| TTTCATCATTGCCTCCTTAT+TGG | 0.151360 | 2_1:+42869374 | Msa0208300:three_prime_UTR |
| TTTATAGGTGAGTTAGTTAA+AGG | 0.201163 | 2_1:-42864771 | None:intergenic |
| TAAATTTGCAATATATTTAT+AGG | 0.208345 | 2_1:-42864786 | None:intergenic |
| AATTGTTCACCGTGTGATTA+AGG | 0.255432 | 2_1:+42867076 | Msa0208300:CDS |
| TAACATCGGCATTAATAATA+TGG | 0.256413 | 2_1:+42865134 | Msa0208300:CDS |
| AAAGAACAAACCTTGATAAT+AGG | 0.272967 | 2_1:-42868856 | None:intergenic |
| TGTTGTTCTTTCTGGAAGTA+TGG | 0.319827 | 2_1:+42865198 | Msa0208300:CDS |
| TGCTGTGGATCCCTGTTTAC+GGG | 0.324021 | 2_1:-42864741 | None:intergenic |
| TAATGCAATGTGTGATATAT+AGG | 0.327695 | 2_1:-42864819 | None:intergenic |
| ATATAAGAATTATTGTTTGA+TGG | 0.327797 | 2_1:+42869414 | Msa0208300:three_prime_UTR |
| ATAATTCTTATATATTGAAT+TGG | 0.342890 | 2_1:-42869404 | None:intergenic |
| GAATTGGCTTTATTCCAATA+AGG | 0.346559 | 2_1:-42869388 | None:intergenic |
| GTGCTGTGGATCCCTGTTTA+CGG | 0.350583 | 2_1:-42864742 | None:intergenic |
| GTTCTTACCTTATGCTGGTT+GGG | 0.356889 | 2_1:+42868810 | Msa0208300:CDS |
| CGAGACTAAAACCCGTAAAC+AGG | 0.377090 | 2_1:+42864730 | None:intergenic |
| TTCAGGTTCTTACCTTATGC+TGG | 0.385331 | 2_1:+42868805 | Msa0208300:intron |
| GGTTCTTACCTTATGCTGGT+TGG | 0.392005 | 2_1:+42868809 | Msa0208300:intron |
| TTTGATTTCAATTCCGCAAT+GGG | 0.395604 | 2_1:+42864913 | Msa0208300:exon |
| TTTCAATTCCGCAATGGGTT+GGG | 0.402780 | 2_1:+42864918 | Msa0208300:exon |
| TTAATCACACGGTGAACAAT+TGG | 0.403082 | 2_1:-42867074 | None:intergenic |
| AAAGGGTTAAGGTGTATAAC+TGG | 0.406805 | 2_1:+42865157 | Msa0208300:CDS |
| TAATAATATGGAAAGGGTTA+AGG | 0.417980 | 2_1:+42865146 | Msa0208300:CDS |
| TCTGAGTTTAATTGACTTGA+CGG | 0.418784 | 2_1:-42864959 | None:intergenic |
| AGCAAGGATCCAATTCGTTC+AGG | 0.422641 | 2_1:+42865831 | Msa0208300:CDS |
| GAATTATTGTTTGATGGCGT+TGG | 0.428671 | 2_1:+42869420 | Msa0208300:three_prime_UTR |
| TTATAGGTGAGTTAGTTAAA+GGG | 0.436540 | 2_1:-42864770 | None:intergenic |
| CATTGGTTATACCTTTAGTA+AGG | 0.437172 | 2_1:-42867572 | None:intergenic |
| CTTCCGTATCTTGACCTTCG+TGG | 0.438482 | 2_1:-42867539 | None:intergenic |
| GTTTCCTCATTACTAATCCT+TGG | 0.453765 | 2_1:-42869443 | None:intergenic |
| TCCTTGCAGTATGTACTAGT+AGG | 0.458013 | 2_1:+42869235 | Msa0208300:intron |
| ATTTCAATTCCGCAATGGGT+TGG | 0.460175 | 2_1:+42864917 | Msa0208300:exon |
| CCAGAAAGAACAACAACAAC+CGG | 0.460818 | 2_1:-42865190 | None:intergenic |
| TGTACAATTATAACCAGGAT+TGG | 0.463802 | 2_1:+42867878 | Msa0208300:CDS |
| ACAATGTCTCCTGAACGAAT+TGG | 0.474196 | 2_1:-42865840 | None:intergenic |
| CTTTCTGGAAGTATGGAACC+TGG | 0.477839 | 2_1:+42865205 | Msa0208300:CDS |
| TTTAAATTCAAAATGACAGT+TGG | 0.479210 | 2_1:-42869518 | None:intergenic |
| AGTAGGAGCACTGGGGCTGC+TGG | 0.486190 | 2_1:+42869252 | Msa0208300:CDS |
| CTCAATTCTATAAAATACCT+TGG | 0.488915 | 2_1:+42864856 | Msa0208300:five_prime_UTR |
| GATACTTATTACCTTACTAA+AGG | 0.497706 | 2_1:+42867561 | Msa0208300:CDS |
| TTGCACCAAGTCATCACTCT+TGG | 0.504906 | 2_1:+42864988 | Msa0208300:CDS |
| CGGCATTAATAATATGGAAA+GGG | 0.506307 | 2_1:+42865140 | Msa0208300:CDS |
| GTATGTACTAGTAGGAGCAC+TGG | 0.508210 | 2_1:+42869243 | Msa0208300:intron |
| CATATTATGGGAAGAGCTGT+CGG | 0.509673 | 2_1:+42867913 | Msa0208300:CDS |
| GTTTGATTTCAATTCCGCAA+TGG | 0.510275 | 2_1:+42864912 | Msa0208300:exon |
| ATTGTAGCCCAACCAGCATA+AGG | 0.512184 | 2_1:-42868817 | None:intergenic |
| ATGCTTACTCTTTGGAAACC+AGG | 0.531614 | 2_1:-42865223 | None:intergenic |
| ACAATAATCCTACAGATGAC+AGG | 0.535864 | 2_1:+42867851 | Msa0208300:CDS |
| TCGGCATTAATAATATGGAA+AGG | 0.538470 | 2_1:+42865139 | Msa0208300:CDS |
| TTGTTTGATGGCGTTGGCCA+AGG | 0.539257 | 2_1:+42869426 | Msa0208300:three_prime_UTR |
| TTCAGGGATGATTGTAACAT+CGG | 0.546152 | 2_1:+42865120 | Msa0208300:intron |
| TATGTACTAGTAGGAGCACT+GGG | 0.548190 | 2_1:+42869244 | Msa0208300:CDS |
| TTTGTTCTTGACCATGAGCA+AGG | 0.565217 | 2_1:+42865815 | Msa0208300:CDS |
| ATATTATGGGAAGAGCTGTC+GGG | 0.568340 | 2_1:+42867914 | Msa0208300:CDS |
| TTGGCCAAGGATTAGTAATG+AGG | 0.589564 | 2_1:+42869439 | Msa0208300:three_prime_UTR |
| TTGGCTTTATTCCAATAAGG+AGG | 0.589582 | 2_1:-42869385 | None:intergenic |
| ACATACCAAGAGTGATGACT+TGG | 0.596302 | 2_1:-42864993 | None:intergenic |
| CAATAATCCTACAGATGACA+GGG | 0.602238 | 2_1:+42867852 | Msa0208300:CDS |
| ACGAATTGGATCCTTGCTCA+TGG | 0.603335 | 2_1:-42865826 | None:intergenic |
| GGTCCACGAAGGTCAAGATA+CGG | 0.607507 | 2_1:+42867536 | Msa0208300:intron |
| TATAACTGGAACTGAATCGC+CGG | 0.611145 | 2_1:+42865171 | Msa0208300:CDS |
| AATTCGTTCAGGAGACATTG+TGG | 0.628702 | 2_1:+42865842 | Msa0208300:CDS |
| GAGACTAAAACCCGTAAACA+GGG | 0.638692 | 2_1:+42864731 | None:intergenic |
| GTCTGAAACCCAACCCATTG+CGG | 0.641477 | 2_1:-42864926 | None:intergenic |
| TACAAAACCCTGTCATCTGT+AGG | 0.643827 | 2_1:-42867859 | None:intergenic |
| TCATACATACCTTAATCACA+CGG | 0.700890 | 2_1:-42867085 | None:intergenic |
| GTTAAAGGGAGACAGTGCTG+TGG | 0.707765 | 2_1:-42864756 | None:intergenic |
| TGCGGAATTGAAATCAAACG+AGG | 0.737955 | 2_1:-42864908 | None:intergenic |
| ATGTACTAGTAGGAGCACTG+GGG | 0.787046 | 2_1:+42869245 | Msa0208300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATATTATTATAT+TGG | + | chr2_1:42865248-42865267 | Msa0208300:intron | 0.0% |
| !! | TAAATTTGCAATATATTTAT+AGG | - | chr2_1:42864789-42864808 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAATTTGTTTC+AGG | + | chr2_1:42865103-42865122 | Msa0208300:intron | 10.0% |
| !!! | TTTTTATTTAATTTGTTTCA+GGG | + | chr2_1:42865104-42865123 | Msa0208300:intron | 10.0% |
| !!! | AGAAATATTTTATGATTATT+TGG | + | chr2_1:42865946-42865965 | Msa0208300:intron | 10.0% |
| !!! | GAAATATTTTATGATTATTT+GGG | + | chr2_1:42865947-42865966 | Msa0208300:intron | 10.0% |
| !!! | AAATATTTTATGATTATTTG+GGG | + | chr2_1:42865948-42865967 | Msa0208300:intron | 10.0% |
| !!! | TTAATTAATTCAATTTTCTA+GGG | + | chr2_1:42868615-42868634 | Msa0208300:intron | 10.0% |
| !! | ATAATTCTTATATATTGAAT+TGG | - | chr2_1:42869407-42869426 | None:intergenic | 10.0% |
| !!! | TTATTTATATGTTTTGGATT+GGG | - | chr2_1:42865673-42865692 | None:intergenic | 15.0% |
| !!! | TTTATTTATATGTTTTGGAT+TGG | - | chr2_1:42865674-42865693 | None:intergenic | 15.0% |
| !! | TAATGTTTAATAAAAACTTG+TGG | + | chr2_1:42865767-42865786 | Msa0208300:intron | 15.0% |
| !!! | TTTTTAAACATTTTCTTTAC+TGG | - | chr2_1:42866480-42866499 | None:intergenic | 15.0% |
| !!! | TATAATAATGTATTGTTGTT+TGG | + | chr2_1:42866879-42866898 | Msa0208300:intron | 15.0% |
| !!! | TTATTTTTATAAACCAGAAA+AGG | + | chr2_1:42866932-42866951 | Msa0208300:intron | 15.0% |
| !!! | CTTAATTAATTCAATTTTCT+AGG | + | chr2_1:42868614-42868633 | Msa0208300:intron | 15.0% |
| !!! | TTAAATGTTAGTTTTGATAT+AGG | - | chr2_1:42869195-42869214 | None:intergenic | 15.0% |
| !! | ATATAAGAATTATTGTTTGA+TGG | + | chr2_1:42869414-42869433 | Msa0208300:three_prime_UTR | 15.0% |
| !!! | AAATTGATTTTTAAAAACCA+TGG | - | chr2_1:42869480-42869499 | None:intergenic | 15.0% |
| !! | TTCTTCAATTCATTATACAT+CGG | + | chr2_1:42865017-42865036 | Msa0208300:intron | 20.0% |
| !! | ATTAATTAAGTATTTGTGTG+TGG | + | chr2_1:42865065-42865084 | Msa0208300:intron | 20.0% |
| !! | AAAAAATAATGCTTACTCTT+TGG | - | chr2_1:42865234-42865253 | None:intergenic | 20.0% |
| !!! | TTTTGAGATTTAAGTTATGT+AGG | + | chr2_1:42865728-42865747 | Msa0208300:intron | 20.0% |
| !!! | TTTAAGTTATGTAGGTTTTA+TGG | + | chr2_1:42865736-42865755 | Msa0208300:intron | 20.0% |
| !!! | TCAATACATTTCAAGAATTT+TGG | + | chr2_1:42866327-42866346 | Msa0208300:intron | 20.0% |
| !! | GTCAACATGTTAAAATAATT+TGG | - | chr2_1:42867126-42867145 | None:intergenic | 20.0% |
| !!! | TCTAAAGATTCTCAATATTT+TGG | + | chr2_1:42867200-42867219 | Msa0208300:intron | 20.0% |
| !! | TTATGAGTTCCATTTATTAA+AGG | - | chr2_1:42867269-42867288 | None:intergenic | 20.0% |
| !! | TAAAATAACATCCACAAATT+AGG | - | chr2_1:42867511-42867530 | None:intergenic | 20.0% |
| !!! | TGTGGATGTTATTTTATTTT+AGG | + | chr2_1:42867515-42867534 | Msa0208300:intron | 20.0% |
| !! | ATTATAATTTGAGCAAACAT+TGG | - | chr2_1:42867592-42867611 | None:intergenic | 20.0% |
| !! | TATTGAAAATGAAATTAGAG+AGG | + | chr2_1:42868123-42868142 | Msa0208300:intron | 20.0% |
| !! | ATTGAAAATGAAATTAGAGA+GGG | + | chr2_1:42868124-42868143 | Msa0208300:intron | 20.0% |
| !! | AACTACATTGATATTTATTC+AGG | + | chr2_1:42868788-42868807 | Msa0208300:intron | 20.0% |
| !!! | TGTTGTTTTCTATACAAAAA+AGG | + | chr2_1:42868920-42868939 | Msa0208300:intron | 20.0% |
| !! | TTACACATAATAGAATTAGA+AGG | - | chr2_1:42869037-42869056 | None:intergenic | 20.0% |
| !! | TCTATTATGTGTAAAACTAT+AGG | + | chr2_1:42869043-42869062 | Msa0208300:intron | 20.0% |
| !! | CTATTATGTGTAAAACTATA+GGG | + | chr2_1:42869044-42869063 | Msa0208300:intron | 20.0% |
| !! | TATTATGTGTAAAACTATAG+GGG | + | chr2_1:42869045-42869064 | Msa0208300:intron | 20.0% |
| !! | TTTAAATTCAAAATGACAGT+TGG | - | chr2_1:42869521-42869540 | None:intergenic | 20.0% |
| ! | TTATAGGTGAGTTAGTTAAA+GGG | - | chr2_1:42864773-42864792 | None:intergenic | 25.0% |
| ! | TTTATAGGTGAGTTAGTTAA+AGG | - | chr2_1:42864774-42864793 | None:intergenic | 25.0% |
| ! | TAATGCAATGTGTGATATAT+AGG | - | chr2_1:42864822-42864841 | None:intergenic | 25.0% |
| ! | CTCAATTCTATAAAATACCT+TGG | + | chr2_1:42864856-42864875 | Msa0208300:five_prime_UTR | 25.0% |
| ! | AATAAATCAAAAATCGACCA+AGG | - | chr2_1:42864876-42864895 | None:intergenic | 25.0% |
| ! | TAACATCGGCATTAATAATA+TGG | + | chr2_1:42865134-42865153 | Msa0208300:CDS | 25.0% |
| ! | TAATAATATGGAAAGGGTTA+AGG | + | chr2_1:42865146-42865165 | Msa0208300:CDS | 25.0% |
| ! | ATAAAAACTTGTGGTTGATT+TGG | + | chr2_1:42865776-42865795 | Msa0208300:intron | 25.0% |
| ! | ACAGAAGATTCATCAATTAA+TGG | - | chr2_1:42865894-42865913 | None:intergenic | 25.0% |
| !! | TCTCATGTTATATTGACTAA+TGG | + | chr2_1:42866058-42866077 | Msa0208300:intron | 25.0% |
| !! | CTATGAAATTGGAAGTATAA+GGG | - | chr2_1:42866366-42866385 | None:intergenic | 25.0% |
| !! | ACTATGAAATTGGAAGTATA+AGG | - | chr2_1:42866367-42866386 | None:intergenic | 25.0% |
| ! | AAATACCTTTGCTTTCAATT+TGG | + | chr2_1:42866560-42866579 | Msa0208300:intron | 25.0% |
| ! | ACTTATATCTCTCGATAAAA+TGG | - | chr2_1:42866651-42866670 | None:intergenic | 25.0% |
| ! | TCAGACTTACTAAAGATAAA+GGG | - | chr2_1:42866792-42866811 | None:intergenic | 25.0% |
| ! | CATTTCATAAACACATTGAA+TGG | - | chr2_1:42866958-42866977 | None:intergenic | 25.0% |
| ! | GATACTTATTACCTTACTAA+AGG | + | chr2_1:42867561-42867580 | Msa0208300:CDS | 25.0% |
| ! | TAAGAGAAGAAAAAGCAAAA+TGG | - | chr2_1:42867677-42867696 | None:intergenic | 25.0% |
| !! | TTGCAGAAAAAGCATATTAT+GGG | + | chr2_1:42867901-42867920 | Msa0208300:CDS | 25.0% |
| !! | GTAAATGTTTTTCTTTGTTG+TGG | + | chr2_1:42867936-42867955 | Msa0208300:intron | 25.0% |
| ! | TTGACCTATCACTTATTTAT+TGG | + | chr2_1:42868004-42868023 | Msa0208300:intron | 25.0% |
| ! | TGACCTATCACTTATTTATT+GGG | + | chr2_1:42868005-42868024 | Msa0208300:intron | 25.0% |
| ! | ATAAACGATTCAACTAATGA+GGG | - | chr2_1:42868061-42868080 | None:intergenic | 25.0% |
| ! | AATAAACGATTCAACTAATG+AGG | - | chr2_1:42868062-42868081 | None:intergenic | 25.0% |
| ! | TGTATTCTCTTCTTAATCAA+TGG | + | chr2_1:42868198-42868217 | Msa0208300:intron | 25.0% |
| ! | AAAAGATTACACTGATCAAT+TGG | - | chr2_1:42868382-42868401 | None:intergenic | 25.0% |
| ! | TGTAAATGGTTGTTTACTTA+TGG | + | chr2_1:42868523-42868542 | Msa0208300:intron | 25.0% |
| ! | TTACTTATGGAGATAAATCA+AGG | + | chr2_1:42868536-42868555 | Msa0208300:intron | 25.0% |
| !!! | TAATTCAATTTTCTAGGGAT+AGG | + | chr2_1:42868620-42868639 | Msa0208300:intron | 25.0% |
| ! | ATATCAGAAGCAAAAAGAAA+TGG | - | chr2_1:42868714-42868733 | None:intergenic | 25.0% |
| !! | AAAGAACAAACCTTGATAAT+AGG | - | chr2_1:42868859-42868878 | None:intergenic | 25.0% |
| ! | CATTTAAACAGAGAATTAAG+AGG | + | chr2_1:42869078-42869097 | Msa0208300:intron | 25.0% |
| ! | AAAATAGTCGAAAAAGAAGA+AGG | - | chr2_1:42869139-42869158 | None:intergenic | 25.0% |
| ! | TTTGATTTCAATTCCGCAAT+GGG | + | chr2_1:42864913-42864932 | Msa0208300:exon | 30.0% |
| !! | TCTGAGTTTAATTGACTTGA+CGG | - | chr2_1:42864962-42864981 | None:intergenic | 30.0% |
| TCGGCATTAATAATATGGAA+AGG | + | chr2_1:42865139-42865158 | Msa0208300:CDS | 30.0% | |
| CGGCATTAATAATATGGAAA+GGG | + | chr2_1:42865140-42865159 | Msa0208300:CDS | 30.0% | |
| ATTATTATATTGGTCCAGAG+TGG | + | chr2_1:42865258-42865277 | Msa0208300:intron | 30.0% | |
| TTATTATATTGGTCCAGAGT+GGG | + | chr2_1:42865259-42865278 | Msa0208300:intron | 30.0% | |
| ! | TTAGCCTTTATAGGAGAATT+AGG | + | chr2_1:42865437-42865456 | Msa0208300:intron | 30.0% |
| TAGCCTTTATAGGAGAATTA+GGG | + | chr2_1:42865438-42865457 | Msa0208300:intron | 30.0% | |
| AAACCCTAATTCTCCTATAA+AGG | - | chr2_1:42865444-42865463 | None:intergenic | 30.0% | |
| !!! | TTTTCAGAGTTAGCCTTTAT+AGG | + | chr2_1:42865462-42865481 | Msa0208300:intron | 30.0% |
| ! | TTAGCCTTTATAGGAGAATT+AGG | + | chr2_1:42865437-42865456 | Msa0208300:intron | 30.0% |
| TAGCCTTTATAGGAGAATTA+GGG | + | chr2_1:42865438-42865457 | Msa0208300:intron | 30.0% | |
| AAACCCTAATTCTCCTATAA+AGG | - | chr2_1:42865444-42865463 | None:intergenic | 30.0% | |
| ! | TTTCAAGTAGAAACCCTAAT+TGG | + | chr2_1:42865497-42865516 | Msa0208300:intron | 30.0% |
| CAAGTTCGAAGATACAATTA+GGG | - | chr2_1:42865555-42865574 | None:intergenic | 30.0% | |
| GTTGTCAAAATGTATGTTGT+TGG | - | chr2_1:42866019-42866038 | None:intergenic | 30.0% | |
| ! | TATATTGACTAATGGAATGC+CGG | + | chr2_1:42866066-42866085 | Msa0208300:intron | 30.0% |
| !! | CTAAACTTGTTGTCAAATAG+CGG | - | chr2_1:42866294-42866313 | None:intergenic | 30.0% |
| GAGCTACATTACTATGAAAT+TGG | - | chr2_1:42866377-42866396 | None:intergenic | 30.0% | |
| CTTTCAATTTGGTTGACTAA+TGG | + | chr2_1:42866571-42866590 | Msa0208300:intron | 30.0% | |
| ACCTATGCTGCTAAATATAA+GGG | - | chr2_1:42866759-42866778 | None:intergenic | 30.0% | |
| AGACTTACTAAAGATAAAGG+GGG | - | chr2_1:42866790-42866809 | None:intergenic | 30.0% | |
| CAGACTTACTAAAGATAAAG+GGG | - | chr2_1:42866791-42866810 | None:intergenic | 30.0% | |
| CTCAGACTTACTAAAGATAA+AGG | - | chr2_1:42866793-42866812 | None:intergenic | 30.0% | |
| CTTTATCTTTAGTAAGTCTG+AGG | + | chr2_1:42866791-42866810 | Msa0208300:intron | 30.0% | |
| GATCGTAATTCAATACATGA+TGG | - | chr2_1:42866819-42866838 | None:intergenic | 30.0% | |
| !! | ATTCTTTGAAGTACAAGACA+GGG | - | chr2_1:42866850-42866869 | None:intergenic | 30.0% |
| !! | AATTCTTTGAAGTACAAGAC+AGG | - | chr2_1:42866851-42866870 | None:intergenic | 30.0% |
| TCTTGTACTTCAAAGAATTG+AGG | + | chr2_1:42866852-42866871 | Msa0208300:intron | 30.0% | |
| CTTGTACTTCAAAGAATTGA+GGG | + | chr2_1:42866853-42866872 | Msa0208300:intron | 30.0% | |
| TAAATATCCACTCATTGTAC+AGG | + | chr2_1:42867040-42867059 | Msa0208300:intron | 30.0% | |
| AAATATCCACTCATTGTACA+GGG | + | chr2_1:42867041-42867060 | Msa0208300:intron | 30.0% | |
| TCATACATACCTTAATCACA+CGG | - | chr2_1:42867088-42867107 | None:intergenic | 30.0% | |
| TAAGTCATATATCTTCGAAG+AGG | + | chr2_1:42867155-42867174 | Msa0208300:intron | 30.0% | |
| !! | TTACTGATTCAATGAACCAT+GGG | - | chr2_1:42867238-42867257 | None:intergenic | 30.0% |
| !! | TTTACTGATTCAATGAACCA+TGG | - | chr2_1:42867239-42867258 | None:intergenic | 30.0% |
| AAGCTGAAGCCTTTAATAAA+TGG | + | chr2_1:42867257-42867276 | Msa0208300:intron | 30.0% | |
| CTTCAGAACATAGAGAATAA+TGG | + | chr2_1:42867290-42867309 | Msa0208300:intron | 30.0% | |
| TAGTATACATATTGATCTGC+TGG | + | chr2_1:42867434-42867453 | Msa0208300:intron | 30.0% | |
| TTCGTATATCACCTAATTTG+TGG | + | chr2_1:42867497-42867516 | Msa0208300:intron | 30.0% | |
| !!! | ATTTTATTTTAGGTCCACGA+AGG | + | chr2_1:42867525-42867544 | Msa0208300:intron | 30.0% |
| ! | CATTGGTTATACCTTTAGTA+AGG | - | chr2_1:42867575-42867594 | None:intergenic | 30.0% |
| ATATTTCAATTGTCAGCTGA+TGG | + | chr2_1:42867621-42867640 | Msa0208300:intron | 30.0% | |
| ACCATTACATTCAGTACTAT+TGG | + | chr2_1:42867709-42867728 | Msa0208300:intron | 30.0% | |
| ! | ACCAATAGTACTGAATGTAA+TGG | - | chr2_1:42867713-42867732 | None:intergenic | 30.0% |
| !! | ATTGGTTTCTGGTTTGTAAT+TGG | + | chr2_1:42867727-42867746 | Msa0208300:intron | 30.0% |
| AATACATAACCGTGCATATA+AGG | - | chr2_1:42867824-42867843 | None:intergenic | 30.0% | |
| !! | GGTTTTGTACAATTATAACC+AGG | + | chr2_1:42867873-42867892 | Msa0208300:CDS | 30.0% |
| TGTACAATTATAACCAGGAT+TGG | + | chr2_1:42867878-42867897 | Msa0208300:CDS | 30.0% | |
| ! | GTTGCAGAAAAAGCATATTA+TGG | + | chr2_1:42867900-42867919 | Msa0208300:CDS | 30.0% |
| GTACCCAATAAATAAGTGAT+AGG | - | chr2_1:42868011-42868030 | None:intergenic | 30.0% | |
| ACTTATTTATTGGGTACACA+AGG | + | chr2_1:42868014-42868033 | Msa0208300:intron | 30.0% | |
| AAGAAGATTAATCAATCTCC+AGG | - | chr2_1:42868172-42868191 | None:intergenic | 30.0% | |
| TTCTCTTCTTAATCAATGGT+TGG | + | chr2_1:42868202-42868221 | Msa0208300:intron | 30.0% | |
| TCTCTTCTTAATCAATGGTT+GGG | + | chr2_1:42868203-42868222 | Msa0208300:intron | 30.0% | |
| ! | AACATTTTATTGAGCAGATG+AGG | + | chr2_1:42868271-42868290 | Msa0208300:intron | 30.0% |
| AATGCTAATCTCCAGAAAAA+GGG | - | chr2_1:42868335-42868354 | None:intergenic | 30.0% | |
| TAATGCTAATCTCCAGAAAA+AGG | - | chr2_1:42868336-42868355 | None:intergenic | 30.0% | |
| ATAGCTAAATGGGAAGAATA+CGG | - | chr2_1:42868476-42868495 | None:intergenic | 30.0% | |
| CCATTTACATTGTGGAATAA+TGG | - | chr2_1:42868512-42868531 | None:intergenic | 30.0% | |
| CCATTATTCCACAATGTAAA+TGG | + | chr2_1:42868509-42868528 | Msa0208300:intron | 30.0% | |
| GTAAACAACCATTTACATTG+TGG | - | chr2_1:42868520-42868539 | None:intergenic | 30.0% | |
| GTCTGAAAAACCTATTATCA+AGG | + | chr2_1:42868846-42868865 | Msa0208300:CDS | 30.0% | |
| CTATTTGAAGAAATCATTGC+TGG | + | chr2_1:42868887-42868906 | Msa0208300:intron | 30.0% | |
| CTTCAACAAGATACTAAAGA+GGG | - | chr2_1:42868983-42869002 | None:intergenic | 30.0% | |
| ACTTCAACAAGATACTAAAG+AGG | - | chr2_1:42868984-42869003 | None:intergenic | 30.0% | |
| ATGTATGTGTAATTGAGAGA+AGG | - | chr2_1:42869013-42869032 | None:intergenic | 30.0% | |
| TTAAACAGAGAATTAAGAGG+AGG | + | chr2_1:42869081-42869100 | Msa0208300:intron | 30.0% | |
| ! | TTTCGACTATTTTCTCTCTT+TGG | + | chr2_1:42869146-42869165 | Msa0208300:intron | 30.0% |
| !! | GAATTGGCTTTATTCCAATA+AGG | - | chr2_1:42869391-42869410 | None:intergenic | 30.0% |
| ! | GTTTGATTTCAATTCCGCAA+TGG | + | chr2_1:42864912-42864931 | Msa0208300:exon | 35.0% |
| TTCAGGGATGATTGTAACAT+CGG | + | chr2_1:42865120-42865139 | Msa0208300:intron | 35.0% | |
| AAAGGGTTAAGGTGTATAAC+TGG | + | chr2_1:42865157-42865176 | Msa0208300:CDS | 35.0% | |
| ! | TGTTGTTCTTTCTGGAAGTA+TGG | + | chr2_1:42865198-42865217 | Msa0208300:CDS | 35.0% |
| AAGTAGAAACCCTAATTGGA+CGG | + | chr2_1:42865501-42865520 | Msa0208300:intron | 35.0% | |
| ATGATGTGATCATGATCACA+CGG | + | chr2_1:42865529-42865548 | Msa0208300:intron | 35.0% | |
| GCAAGTTCGAAGATACAATT+AGG | - | chr2_1:42865556-42865575 | None:intergenic | 35.0% | |
| ! | ATTGTATCTTCGAACTTGCT+TGG | + | chr2_1:42865557-42865576 | Msa0208300:intron | 35.0% |
| ! | TTGTATCTTCGAACTTGCTT+GGG | + | chr2_1:42865558-42865577 | Msa0208300:intron | 35.0% |
| CGCTATTTGACAACAAGTTT+AGG | + | chr2_1:42866292-42866311 | Msa0208300:intron | 35.0% | |
| GTCAACCAAATTGAAAGCAA+AGG | - | chr2_1:42866568-42866587 | None:intergenic | 35.0% | |
| GAGATATAAGTACAAGCTAC+TGG | + | chr2_1:42866660-42866679 | Msa0208300:intron | 35.0% | |
| GCTGCTAAATATAAGGGAAA+AGG | - | chr2_1:42866753-42866772 | None:intergenic | 35.0% | |
| TCCCTTATATTTAGCAGCAT+AGG | + | chr2_1:42866755-42866774 | Msa0208300:intron | 35.0% | |
| CACCTATGCTGCTAAATATA+AGG | - | chr2_1:42866760-42866779 | None:intergenic | 35.0% | |
| GACTTACTAAAGATAAAGGG+GGG | - | chr2_1:42866789-42866808 | None:intergenic | 35.0% | |
| TTAATCACACGGTGAACAAT+TGG | - | chr2_1:42867077-42867096 | None:intergenic | 35.0% | |
| AATTGTTCACCGTGTGATTA+AGG | + | chr2_1:42867076-42867095 | Msa0208300:CDS | 35.0% | |
| !! | AGAGGTGTTATGCACATAAA+TGG | + | chr2_1:42867173-42867192 | Msa0208300:intron | 35.0% |
| !! | TACTGATTCAATGAACCATG+GGG | - | chr2_1:42867237-42867256 | None:intergenic | 35.0% |
| ACAAGTTTGCATGTTCTACT+TGG | + | chr2_1:42867330-42867349 | Msa0208300:intron | 35.0% | |
| ! | ATTGATAATTGCAGAACCGA+AGG | + | chr2_1:42867381-42867400 | Msa0208300:intron | 35.0% |
| !! | CATTCAGTACTATTGGTTTC+TGG | + | chr2_1:42867716-42867735 | Msa0208300:intron | 35.0% |
| TGTTCGATCATTGGATGTTA+AGG | - | chr2_1:42867792-42867811 | None:intergenic | 35.0% | |
| AAACGAGTATGTTCGATCAT+TGG | - | chr2_1:42867801-42867820 | None:intergenic | 35.0% | |
| TACTCGTTTCCTTATATGCA+CGG | + | chr2_1:42867812-42867831 | Msa0208300:intron | 35.0% | |
| TATGCACGGTTATGTATTTC+AGG | + | chr2_1:42867826-42867845 | Msa0208300:intron | 35.0% | |
| ACAATAATCCTACAGATGAC+AGG | + | chr2_1:42867851-42867870 | Msa0208300:CDS | 35.0% | |
| CAATAATCCTACAGATGACA+GGG | + | chr2_1:42867852-42867871 | Msa0208300:CDS | 35.0% | |
| GAGAATCCATTAAAAGCTAG+AGG | + | chr2_1:42868087-42868106 | Msa0208300:intron | 35.0% | |
| !!! | CAAGATCCTCTAGCTTTTAA+TGG | - | chr2_1:42868096-42868115 | None:intergenic | 35.0% |
| TAATCAATCTCCAGGTATTC+AGG | - | chr2_1:42868164-42868183 | None:intergenic | 35.0% | |
| TTAATCAATGGTTGGGATGT+TGG | + | chr2_1:42868210-42868229 | Msa0208300:intron | 35.0% | |
| !! | ATTTTCTAGGGATAGGAATG+AGG | + | chr2_1:42868627-42868646 | Msa0208300:intron | 35.0% |
| ATGAGGAGCTAGTTAATATC+TGG | + | chr2_1:42868644-42868663 | Msa0208300:intron | 35.0% | |
| AAGGAGAATGCGATTGAAAA+AGG | - | chr2_1:42869120-42869139 | None:intergenic | 35.0% | |
| !! | GGTTTTGACATCAAAGGAAT+AGG | + | chr2_1:42869273-42869292 | Msa0208300:CDS | 35.0% |
| TTTCATCATTGCCTCCTTAT+TGG | + | chr2_1:42869374-42869393 | Msa0208300:three_prime_UTR | 35.0% | |
| !! | TTGGCTTTATTCCAATAAGG+AGG | - | chr2_1:42869388-42869407 | None:intergenic | 35.0% |
| !! | GAATTATTGTTTGATGGCGT+TGG | + | chr2_1:42869420-42869439 | Msa0208300:three_prime_UTR | 35.0% |
| GTTTCCTCATTACTAATCCT+TGG | - | chr2_1:42869446-42869465 | None:intergenic | 35.0% | |
| TGCGGAATTGAAATCAAACG+AGG | - | chr2_1:42864911-42864930 | None:intergenic | 40.0% | |
| ATTTCAATTCCGCAATGGGT+TGG | + | chr2_1:42864917-42864936 | Msa0208300:exon | 40.0% | |
| ! | TTTCAATTCCGCAATGGGTT+GGG | + | chr2_1:42864918-42864937 | Msa0208300:exon | 40.0% |
| ACATACCAAGAGTGATGACT+TGG | - | chr2_1:42864996-42865015 | None:intergenic | 40.0% | |
| TATAACTGGAACTGAATCGC+CGG | + | chr2_1:42865171-42865190 | Msa0208300:CDS | 40.0% | |
| CCAGAAAGAACAACAACAAC+CGG | - | chr2_1:42865193-42865212 | None:intergenic | 40.0% | |
| ! | ATGCTTACTCTTTGGAAACC+AGG | - | chr2_1:42865226-42865245 | None:intergenic | 40.0% |
| TTGATTGAAGGCCTTAGAGA+TGG | + | chr2_1:42865290-42865309 | Msa0208300:intron | 40.0% | |
| !! | AGTCACGAGTTAGCCTTTAT+AGG | + | chr2_1:42865428-42865447 | Msa0208300:intron | 40.0% |
| TCATGAAAGCCGTCCAATTA+GGG | - | chr2_1:42865513-42865532 | None:intergenic | 40.0% | |
| ATCATGAAAGCCGTCCAATT+AGG | - | chr2_1:42865514-42865533 | None:intergenic | 40.0% | |
| ! | CAGTTGGTCTCTTGTTGATT+GGG | + | chr2_1:42865642-42865661 | Msa0208300:intron | 40.0% |
| !! | TGTGGTTGATTTGGTCTTAC+AGG | + | chr2_1:42865785-42865804 | Msa0208300:intron | 40.0% |
| !! | GTGGTTGATTTGGTCTTACA+GGG | + | chr2_1:42865786-42865805 | Msa0208300:intron | 40.0% |
| TTTGTTCTTGACCATGAGCA+AGG | + | chr2_1:42865815-42865834 | Msa0208300:CDS | 40.0% | |
| ACAATGTCTCCTGAACGAAT+TGG | - | chr2_1:42865843-42865862 | None:intergenic | 40.0% | |
| AATTCGTTCAGGAGACATTG+TGG | + | chr2_1:42865842-42865861 | Msa0208300:CDS | 40.0% | |
| ACATCAGTGCTATATCACTG+TGG | - | chr2_1:42866172-42866191 | None:intergenic | 40.0% | |
| !! | AGAATTTTGGTGACATCGCT+AGG | + | chr2_1:42866340-42866359 | Msa0208300:intron | 40.0% |
| ! | TGTTGTTTAGAGCCTTACTG+AGG | + | chr2_1:42866434-42866453 | Msa0208300:intron | 40.0% |
| ! | CCAGATAGTGGTTGTGTTAT+AGG | - | chr2_1:42866540-42866559 | None:intergenic | 40.0% |
| CCTATAACACAACCACTATC+TGG | + | chr2_1:42866537-42866556 | Msa0208300:intron | 40.0% | |
| !! | GCAAAGGTATTTCCAGATAG+TGG | - | chr2_1:42866552-42866571 | None:intergenic | 40.0% |
| AGTACAAGACAGGGAGAAAT+AGG | - | chr2_1:42866841-42866860 | None:intergenic | 40.0% | |
| ! | ACACATTGAATGGCCTTTTC+TGG | - | chr2_1:42866948-42866967 | None:intergenic | 40.0% |
| TGTTTATGAAATGTGCGCGT+TGG | + | chr2_1:42866965-42866984 | Msa0208300:intron | 40.0% | |
| !! | TTGGTAATCATTTTCCCCCA+TGG | + | chr2_1:42867219-42867238 | Msa0208300:intron | 40.0% |
| ! | ACTGATTCAATGAACCATGG+GGG | - | chr2_1:42867236-42867255 | None:intergenic | 40.0% |
| AAGTTCATGTAGTGAGCCTT+CGG | - | chr2_1:42867400-42867419 | None:intergenic | 40.0% | |
| CTGATGGTTATCGCAATATG+CGG | + | chr2_1:42867637-42867656 | Msa0208300:intron | 40.0% | |
| TCGATCATTGGATGTTAAGG+AGG | - | chr2_1:42867789-42867808 | None:intergenic | 40.0% | |
| TACAAAACCCTGTCATCTGT+AGG | - | chr2_1:42867862-42867881 | None:intergenic | 40.0% | |
| CATATTATGGGAAGAGCTGT+CGG | + | chr2_1:42867913-42867932 | Msa0208300:CDS | 40.0% | |
| ATATTATGGGAAGAGCTGTC+GGG | + | chr2_1:42867914-42867933 | Msa0208300:CDS | 40.0% | |
| AAAGCTAGAGGATCTTGTCT+TGG | + | chr2_1:42868099-42868118 | Msa0208300:intron | 40.0% | |
| TTTCATGTCTCCTGAATACC+TGG | + | chr2_1:42868151-42868170 | Msa0208300:intron | 40.0% | |
| ! | TACACATACCTCCCTTTTTC+TGG | + | chr2_1:42868321-42868340 | Msa0208300:intron | 40.0% |
| TAGTCCTGTTTGTACTCTGT+TGG | + | chr2_1:42868422-42868441 | Msa0208300:intron | 40.0% | |
| AGTCCTGTTTGTACTCTGTT+GGG | + | chr2_1:42868423-42868442 | Msa0208300:intron | 40.0% | |
| AAACCCAACAGAGTACAAAC+AGG | - | chr2_1:42868429-42868448 | None:intergenic | 40.0% | |
| TTCTTCCCATTTAGCTATCC+TGG | + | chr2_1:42868478-42868497 | Msa0208300:intron | 40.0% | |
| TTGCACCAGGATAGCTAAAT+GGG | - | chr2_1:42868486-42868505 | None:intergenic | 40.0% | |
| TTTGCACCAGGATAGCTAAA+TGG | - | chr2_1:42868487-42868506 | None:intergenic | 40.0% | |
| !!! | GGAATAATGGATTTTGCACC+AGG | - | chr2_1:42868499-42868518 | None:intergenic | 40.0% |
| ! | TTCAGGTTCTTACCTTATGC+TGG | + | chr2_1:42868805-42868824 | Msa0208300:intron | 40.0% |
| ! | GTTCTTACCTTATGCTGGTT+GGG | + | chr2_1:42868810-42868829 | Msa0208300:CDS | 40.0% |
| TCCTTGCAGTATGTACTAGT+AGG | + | chr2_1:42869235-42869254 | Msa0208300:intron | 40.0% | |
| TCCTACTAGTACATACTGCA+AGG | - | chr2_1:42869239-42869258 | None:intergenic | 40.0% | |
| !! | TATGTACTAGTAGGAGCACT+GGG | + | chr2_1:42869244-42869263 | Msa0208300:CDS | 40.0% |
| ! | TTGGCCAAGGATTAGTAATG+AGG | + | chr2_1:42869439-42869458 | Msa0208300:three_prime_UTR | 40.0% |
| TTGCACCAAGTCATCACTCT+TGG | + | chr2_1:42864988-42865007 | Msa0208300:CDS | 45.0% | |
| ! | CCGGTTGTTGTTGTTCTTTC+TGG | + | chr2_1:42865190-42865209 | Msa0208300:CDS | 45.0% |
| ! | CTTTCTGGAAGTATGGAACC+TGG | + | chr2_1:42865205-42865224 | Msa0208300:CDS | 45.0% |
| ! | TGGGACTTGACGTTGATTGA+AGG | + | chr2_1:42865278-42865297 | Msa0208300:intron | 45.0% |
| CAGCGAATCTACCATCTCTA+AGG | - | chr2_1:42865304-42865323 | None:intergenic | 45.0% | |
| TAGAGATGGTAGATTCGCTG+AGG | + | chr2_1:42865304-42865323 | Msa0208300:intron | 45.0% | |
| TACAAACACCACTTCGTGGA+GGG | - | chr2_1:42865338-42865357 | None:intergenic | 45.0% | |
| ACACTCCGACGATCACTAAA+CGG | + | chr2_1:42865365-42865384 | Msa0208300:intron | 45.0% | |
| CCAATCAACAAGAGACCAAC+TGG | - | chr2_1:42865644-42865663 | None:intergenic | 45.0% | |
| ! | CCAGTTGGTCTCTTGTTGAT+TGG | + | chr2_1:42865641-42865660 | Msa0208300:intron | 45.0% |
| ACGAATTGGATCCTTGCTCA+TGG | - | chr2_1:42865829-42865848 | None:intergenic | 45.0% | |
| AGCAAGGATCCAATTCGTTC+AGG | + | chr2_1:42865831-42865850 | Msa0208300:CDS | 45.0% | |
| ATGCCGGTCTAGGTTGTTTA+TGG | + | chr2_1:42866082-42866101 | Msa0208300:intron | 45.0% | |
| TGCCGGTCTAGGTTGTTTAT+GGG | + | chr2_1:42866083-42866102 | Msa0208300:intron | 45.0% | |
| GACCCATAAACAACCTAGAC+CGG | - | chr2_1:42866088-42866107 | None:intergenic | 45.0% | |
| TTGTACCCAACAGTGTGTCA+CGG | + | chr2_1:42866212-42866231 | Msa0208300:intron | 45.0% | |
| TTGTTCCGTGACACACTGTT+GGG | - | chr2_1:42866220-42866239 | None:intergenic | 45.0% | |
| ATTGTTCCGTGACACACTGT+TGG | - | chr2_1:42866221-42866240 | None:intergenic | 45.0% | |
| ! | ATATCACGCTAGCCTCAGTA+AGG | - | chr2_1:42866449-42866468 | None:intergenic | 45.0% |
| !!! | TGAAATGTGCGCGTTGGTTT+TGG | + | chr2_1:42866971-42866990 | Msa0208300:intron | 45.0% |
| !! | GCTTTTTCTGCAACCAATCC+TGG | - | chr2_1:42867894-42867913 | None:intergenic | 45.0% |
| GTTGGCTAACCTCATTGGTA+CGG | + | chr2_1:42868228-42868247 | Msa0208300:intron | 45.0% | |
| GCTAATCTCCAGAAAAAGGG+AGG | - | chr2_1:42868332-42868351 | None:intergenic | 45.0% | |
| AGCATTATCTGCCAGTCAGT+AGG | + | chr2_1:42868349-42868368 | Msa0208300:intron | 45.0% | |
| GCATTATCTGCCAGTCAGTA+GGG | + | chr2_1:42868350-42868369 | Msa0208300:intron | 45.0% | |
| TTGGTTGAAACCCTACTGAC+TGG | - | chr2_1:42868363-42868382 | None:intergenic | 45.0% | |
| GGTTCTTACCTTATGCTGGT+TGG | + | chr2_1:42868809-42868828 | Msa0208300:intron | 45.0% | |
| ATTGTAGCCCAACCAGCATA+AGG | - | chr2_1:42868820-42868839 | None:intergenic | 45.0% | |
| ! | GTATGTACTAGTAGGAGCAC+TGG | + | chr2_1:42869243-42869262 | Msa0208300:intron | 45.0% |
| !! | ATGTACTAGTAGGAGCACTG+GGG | + | chr2_1:42869245-42869264 | Msa0208300:CDS | 45.0% |
| !!! | GCTGCTGGTTTTGACATCAA+AGG | + | chr2_1:42869267-42869286 | Msa0208300:CDS | 45.0% |
| !! | GGAAACTGCTTTTGTTGCCA+TGG | + | chr2_1:42869460-42869479 | Msa0208300:three_prime_UTR | 45.0% |
| !!! | TTTAATTTATTTATATGTTT+TGG | - | chr2_1:42865679-42865698 | None:intergenic | 5.0% |
| TGCTGTGGATCCCTGTTTAC+GGG | - | chr2_1:42864744-42864763 | None:intergenic | 50.0% | |
| GTGCTGTGGATCCCTGTTTA+CGG | - | chr2_1:42864745-42864764 | None:intergenic | 50.0% | |
| GTTAAAGGGAGACAGTGCTG+TGG | - | chr2_1:42864759-42864778 | None:intergenic | 50.0% | |
| ! | GTCTGAAACCCAACCCATTG+CGG | - | chr2_1:42864929-42864948 | None:intergenic | 50.0% |
| ATCAACGTCAAGTCCCACTC+TGG | - | chr2_1:42865275-42865294 | None:intergenic | 50.0% | |
| GATGGTAGATTCGCTGAGGA+CGG | + | chr2_1:42865308-42865327 | Msa0208300:intron | 50.0% | |
| ACAAACACCACTTCGTGGAG+GGG | - | chr2_1:42865337-42865356 | None:intergenic | 50.0% | |
| GTACAAACACCACTTCGTGG+AGG | - | chr2_1:42865339-42865358 | None:intergenic | 50.0% | |
| CAGGTACAAACACCACTTCG+TGG | - | chr2_1:42865342-42865361 | None:intergenic | 50.0% | |
| ! | GTCGCGAGTGAGAGGTTTTA+TGG | + | chr2_1:42865387-42865406 | Msa0208300:intron | 50.0% |
| !! | CCTCTAGGGTATGTCCATAG+CGG | + | chr2_1:42865585-42865604 | Msa0208300:intron | 50.0% |
| ! | TCCATAGCGGAAGTCTCTAG+TGG | + | chr2_1:42865598-42865617 | Msa0208300:intron | 50.0% |
| ! | CCATAGCGGAAGTCTCTAGT+GGG | + | chr2_1:42865599-42865618 | Msa0208300:intron | 50.0% |
| GACTAATGGAATGCCGGTCT+AGG | + | chr2_1:42866072-42866091 | Msa0208300:intron | 50.0% | |
| GCTATATCACTGTGGCGTAG+CGG | - | chr2_1:42866164-42866183 | None:intergenic | 50.0% | |
| TCACGTCCCTGTACAATGAG+TGG | - | chr2_1:42867050-42867069 | None:intergenic | 50.0% | |
| GGTCCACGAAGGTCAAGATA+CGG | + | chr2_1:42867536-42867555 | Msa0208300:intron | 50.0% | |
| CTTCCGTATCTTGACCTTCG+TGG | - | chr2_1:42867542-42867561 | None:intergenic | 50.0% | |
| ! | GGGATGTTGGCTAACCTCAT+TGG | + | chr2_1:42868223-42868242 | Msa0208300:intron | 50.0% |
| CTCTCGTTACCGTACCAATG+AGG | - | chr2_1:42868240-42868259 | None:intergenic | 50.0% | |
| !! | TTGTTTGATGGCGTTGGCCA+AGG | + | chr2_1:42869426-42869445 | Msa0208300:three_prime_UTR | 50.0% |
| ! | GTGATCGTCGGAGTGTTTGC+AGG | - | chr2_1:42865361-42865380 | None:intergenic | 55.0% |
| CGCGACCGTTTAGTGATCGT+CGG | - | chr2_1:42865373-42865392 | None:intergenic | 55.0% | |
| ACTAAACGGTCGCGAGTGAG+AGG | + | chr2_1:42865379-42865398 | Msa0208300:intron | 55.0% | |
| CCGCTATGGACATACCCTAG+AGG | - | chr2_1:42865588-42865607 | None:intergenic | 55.0% | |
| CCCACTAGAGACTTCCGCTA+TGG | - | chr2_1:42865602-42865621 | None:intergenic | 55.0% | |
| ! | CTAGTGGGTCACTACCTTCG+CGG | + | chr2_1:42865614-42865633 | Msa0208300:intron | 55.0% |
| TACCTTCGCGGAAGACCAGT+TGG | + | chr2_1:42865626-42865645 | Msa0208300:intron | 55.0% | |
| ! | TCACTGTGGCGTAGCGGAAT+TGG | - | chr2_1:42866158-42866177 | None:intergenic | 55.0% |
| ACTTGCTTGGGCGTGCCTCT+AGG | + | chr2_1:42865570-42865589 | Msa0208300:intron | 60.0% | |
| CTTGCTTGGGCGTGCCTCTA+GGG | + | chr2_1:42865571-42865590 | Msa0208300:intron | 60.0% | |
| !! | GACCAACTGGTCTTCCGCGA+AGG | - | chr2_1:42865631-42865650 | None:intergenic | 60.0% |
| AGCGGCAGTAGTGACGCTAG+AGG | - | chr2_1:42866276-42866295 | None:intergenic | 60.0% | |
| !! | AGTAGGAGCACTGGGGCTGC+TGG | + | chr2_1:42869252-42869271 | Msa0208300:CDS | 65.0% |
| ACGGCAGCCCCTCCACGAAG+TGG | + | chr2_1:42865327-42865346 | Msa0208300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42864735 | 42869567 | 42864735 | ID=Msa0208300;Name=Msa0208300 |
| chr2_1 | mRNA | 42864735 | 42869567 | 42864735 | ID=Msa0208300-mRNA-1;Parent=Msa0208300;Name=Msa0208300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=196|1|1|1|1|1|8|273|180 |
| chr2_1 | exon | 42864735 | 42865009 | 42864735 | ID=Msa0208300-mRNA-1:exon:12766;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42865125 | 42865237 | 42865125 | ID=Msa0208300-mRNA-1:exon:12767;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42865807 | 42865878 | 42865807 | ID=Msa0208300-mRNA-1:exon:12768;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42867062 | 42867097 | 42867062 | ID=Msa0208300-mRNA-1:exon:12769;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42867537 | 42867582 | 42867537 | ID=Msa0208300-mRNA-1:exon:12770;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42867848 | 42867935 | 42867848 | ID=Msa0208300-mRNA-1:exon:12771;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42868810 | 42868867 | 42868810 | ID=Msa0208300-mRNA-1:exon:12772;Parent=Msa0208300-mRNA-1 |
| chr2_1 | exon | 42869244 | 42869567 | 42869244 | ID=Msa0208300-mRNA-1:exon:12773;Parent=Msa0208300-mRNA-1 |
| chr2_1 | five_prime_UTR | 42864735 | 42864930 | 42864735 | ID=Msa0208300-mRNA-1:five_prime_utr;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42864931 | 42865009 | 42864931 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42865125 | 42865237 | 42865125 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42865807 | 42865878 | 42865807 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42867062 | 42867097 | 42867062 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42867537 | 42867582 | 42867537 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42867848 | 42867935 | 42867848 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42868810 | 42868867 | 42868810 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | CDS | 42869244 | 42869294 | 42869244 | ID=Msa0208300-mRNA-1:cds;Parent=Msa0208300-mRNA-1 |
| chr2_1 | three_prime_UTR | 42869295 | 42869567 | 42869295 | ID=Msa0208300-mRNA-1:three_prime_utr;Parent=Msa0208300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
