Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208310 | XP_039686516.1 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 1.36e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208310 | sp|Q5RC30|SC11C_PONAB | 58.523 | 176 | 71 | 2 | 6 | 180 | 17 | 191 | 2.98e-70 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208310 | I3SCN5 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 6.48e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003930 | Msa0208310 | 0.808509 | 2.990904e-50 | -8.615850e-47 |
| Msa0100800 | Msa0208310 | 0.834033 | 3.786288e-56 | -8.615850e-47 |
| Msa0167480 | Msa0208310 | 0.820687 | 6.014487e-53 | -8.615850e-47 |
| Msa0208180 | Msa0208310 | 0.887112 | 1.899165e-72 | -8.615850e-47 |
| Msa0208300 | Msa0208310 | 0.884602 | 1.666202e-71 | -8.615850e-47 |
| Msa0208310 | Msa0226460 | 0.800775 | 1.230186e-48 | -8.615850e-47 |
| Msa0208310 | Msa0229360 | 0.808804 | 2.586410e-50 | -8.615850e-47 |
| Msa0208310 | Msa0262480 | 0.815339 | 9.726642e-52 | -8.615850e-47 |
| Msa0208310 | Msa0300350 | 0.803416 | 3.523370e-49 | -8.615850e-47 |
| Msa0208310 | Msa0382400 | 0.862459 | 4.992039e-64 | -8.615850e-47 |
| Msa0208310 | Msa0526540 | 0.813332 | 2.701269e-51 | -8.615850e-47 |
| Msa0208310 | Msa0561430 | 0.811878 | 5.617548e-51 | -8.615850e-47 |
| Msa0208310 | Msa0576940 | 0.824303 | 8.683922e-54 | -8.615850e-47 |
| Msa0208310 | Msa0597000 | 0.809657 | 1.697883e-50 | -8.615850e-47 |
| Msa0208310 | Msa0654870 | 0.803419 | 3.516988e-49 | -8.615850e-47 |
| Msa0208310 | Msa0739080 | 0.814909 | 1.211951e-51 | -8.615850e-47 |
| Msa0208310 | Msa0750920 | 0.800132 | 1.663135e-48 | -8.615850e-47 |
| Msa0208310 | Msa0819540 | 0.851646 | 7.750308e-61 | -8.615850e-47 |
| Msa0208310 | Msa1030930 | 0.808930 | 2.431627e-50 | -8.615850e-47 |
| Msa0208310 | Msa1041140 | 0.810984 | 8.784650e-51 | -8.615850e-47 |
| Msa0208310 | Msa1070390 | 0.821816 | 3.301027e-53 | -8.615850e-47 |
| Msa0208310 | Msa1079190 | 0.840744 | 7.231675e-58 | -8.615850e-47 |
| Msa0208310 | Msa1082290 | 0.804660 | 1.941552e-49 | -8.615850e-47 |
| Msa0208310 | Msa1124070 | 0.815339 | 9.727402e-52 | -8.615850e-47 |
| Msa0208310 | Msa1127190 | 0.845205 | 4.694597e-59 | -8.615850e-47 |
| Msa0208310 | Msa1131170 | 0.837878 | 4.007818e-57 | -8.615850e-47 |
| Msa0208310 | Msa1138870 | 0.801243 | 9.871957e-49 | -8.615850e-47 |
| Msa0208310 | Msa1166870 | 0.824371 | 8.370959e-54 | -8.615850e-47 |
| Msa0208310 | Msa1169080 | 0.845784 | 3.273019e-59 | -8.615850e-47 |
| Msa0208310 | Msa1362020 | 0.841773 | 3.876177e-58 | -8.615850e-47 |
| Msa0208310 | Msa1363330 | 0.809511 | 1.825083e-50 | -8.615850e-47 |
| Msa0208310 | Msa1386600 | 0.808745 | 2.663721e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208310 | MtrunA17_Chr2g0307071 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 1.25e-131 | 366 |
| Msa0208310 | MtrunA17_Chr2g0332921 | 77.222 | 180 | 41 | 0 | 1 | 180 | 1 | 180 | 1.56e-101 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208310 | AT1G52600.1 | 75.000 | 180 | 45 | 0 | 1 | 180 | 1 | 180 | 1.36e-99 | 285 |
| Msa0208310 | AT3G15710.1 | 72.222 | 180 | 50 | 0 | 1 | 180 | 1 | 180 | 1.09e-93 | 270 |
Find 68 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGTCGTTGTTGTTCTTTC+TGG | 0.084795 | 2_1:-43008696 | Msa0208310:CDS |
| TTTCATCATTGCCTCCTTAT+TGG | 0.151360 | 2_1:-43004554 | Msa0208310:three_prime_UTR |
| TTTATAGGTGAGTTAGTTAA+AGG | 0.201163 | 2_1:+43009116 | None:intergenic |
| TAAATTTGCAATATATTTAT+AGG | 0.208345 | 2_1:+43009101 | None:intergenic |
| AATTGTTCACCGTGTGATTA+AGG | 0.255432 | 2_1:-43006848 | Msa0208310:intron |
| TAACATCGGCATTAATAATA+TGG | 0.256413 | 2_1:-43008752 | Msa0208310:CDS |
| AAAGAACAAACCTTGATAAT+AGG | 0.272967 | 2_1:+43005072 | None:intergenic |
| TGCTGTGGATCCCTGTTTAC+GGG | 0.324021 | 2_1:+43009146 | None:intergenic |
| TAATGCAATGTGTGATATAT+AGG | 0.327695 | 2_1:+43009068 | None:intergenic |
| ATATAAGAATTATTGTTTGA+TGG | 0.327797 | 2_1:-43004514 | Msa0208310:three_prime_UTR |
| ATAATTCTTATATATTGAAT+TGG | 0.342890 | 2_1:+43004524 | None:intergenic |
| GAATTGGCTTTATTCCAATA+AGG | 0.346559 | 2_1:+43004540 | None:intergenic |
| GTGCTGTGGATCCCTGTTTA+CGG | 0.350583 | 2_1:+43009145 | None:intergenic |
| GTTCTTACCTTATGCTGGTT+GGG | 0.356889 | 2_1:-43005118 | Msa0208310:CDS |
| AAAGGGTTAATGTGTATAAC+TGG | 0.369021 | 2_1:-43008729 | Msa0208310:CDS |
| CGAGACTAAAACCCGTAAAC+AGG | 0.377090 | 2_1:-43009157 | None:intergenic |
| TTCAGGTTCTTACCTTATGC+TGG | 0.385331 | 2_1:-43005123 | Msa0208310:intron |
| GGTTCTTACCTTATGCTGGT+TGG | 0.392005 | 2_1:-43005119 | Msa0208310:CDS |
| TTTGATTTCAATTCCGCAAT+GGG | 0.395604 | 2_1:-43008974 | Msa0208310:exon |
| TTTCAATTCCGCAATGGGTT+GGG | 0.402780 | 2_1:-43008969 | Msa0208310:exon |
| TTAATCACACGGTGAACAAT+TGG | 0.403082 | 2_1:+43006850 | None:intergenic |
| TCTGAGTTTAATTGACTTGA+CGG | 0.418784 | 2_1:+43008928 | None:intergenic |
| AGCAAGGATCCAATTCGTTC+AGG | 0.422641 | 2_1:-43008090 | Msa0208310:CDS |
| GAATTATTGTTTGATGGCGT+TGG | 0.428671 | 2_1:-43004508 | Msa0208310:three_prime_UTR |
| TTATAGGTGAGTTAGTTAAA+GGG | 0.436540 | 2_1:+43009117 | None:intergenic |
| CATTGGTTATACCTTTAGTA+AGG | 0.437172 | 2_1:+43006357 | None:intergenic |
| CTTTCTGGAAGCATGGAACC+TGG | 0.438017 | 2_1:-43008681 | Msa0208310:CDS |
| CTTCCGTATCTTGACCTTCG+TGG | 0.438482 | 2_1:+43006390 | None:intergenic |
| GTTTCCTCATTACTAATCCT+TGG | 0.453765 | 2_1:+43004485 | None:intergenic |
| TCCTTGCAGTATGTACTAGT+AGG | 0.458013 | 2_1:-43004693 | Msa0208310:intron |
| ATTTCAATTCCGCAATGGGT+TGG | 0.460175 | 2_1:-43008970 | Msa0208310:exon |
| TGTACAATTATAACCAGGAT+TGG | 0.463802 | 2_1:-43006051 | Msa0208310:CDS |
| ACAATGTCTCCTGAACGAAT+TGG | 0.474196 | 2_1:+43008081 | None:intergenic |
| TTTAAATTCAAAATGACAGT+TGG | 0.479210 | 2_1:+43004410 | None:intergenic |
| AGTAGGAGCACTGGGGCTGC+TGG | 0.486190 | 2_1:-43004676 | Msa0208310:CDS |
| CTCAATTCTATAAAATACCT+TGG | 0.488915 | 2_1:-43009031 | Msa0208310:five_prime_UTR |
| GATACTTATTACCTTACTAA+AGG | 0.497706 | 2_1:-43006368 | Msa0208310:intron |
| TTGCACCAAGTCATCACTCT+TGG | 0.504906 | 2_1:-43008899 | Msa0208310:intron |
| TGTTGTTCTTTCTGGAAGCA+TGG | 0.506152 | 2_1:-43008688 | Msa0208310:CDS |
| CGGCATTAATAATATGGAAA+GGG | 0.506307 | 2_1:-43008746 | Msa0208310:CDS |
| GTATGTACTAGTAGGAGCAC+TGG | 0.508210 | 2_1:-43004685 | Msa0208310:CDS |
| CATATTATGGGAAGAGCTGT+CGG | 0.509673 | 2_1:-43006016 | Msa0208310:CDS |
| GTTTGATTTCAATTCCGCAA+TGG | 0.510275 | 2_1:-43008975 | Msa0208310:exon |
| ATTGTAGCCCAACCAGCATA+AGG | 0.512184 | 2_1:+43005111 | None:intergenic |
| ATGCTTACTCTTTGGAAACC+AGG | 0.531614 | 2_1:+43008663 | None:intergenic |
| ACAATAATCCTACAGATGAC+AGG | 0.535864 | 2_1:-43006078 | Msa0208310:CDS |
| TCGGCATTAATAATATGGAA+AGG | 0.538470 | 2_1:-43008747 | Msa0208310:CDS |
| TTGTTTGATGGCGTTGGCCA+AGG | 0.539257 | 2_1:-43004502 | Msa0208310:three_prime_UTR |
| TTCAGGGATGATTGTAACAT+CGG | 0.546152 | 2_1:-43008766 | Msa0208310:intron |
| TATGTACTAGTAGGAGCACT+GGG | 0.548190 | 2_1:-43004684 | Msa0208310:CDS |
| TTTGTTCTTGACCATGAGCA+AGG | 0.565217 | 2_1:-43008106 | Msa0208310:CDS |
| ATATTATGGGAAGAGCTGTC+GGG | 0.568340 | 2_1:-43006015 | Msa0208310:intron |
| CCAGAAAGAACAACAACGAC+CGG | 0.569922 | 2_1:+43008696 | None:intergenic |
| TTGGCCAAGGATTAGTAATG+AGG | 0.589564 | 2_1:-43004489 | Msa0208310:three_prime_UTR |
| TTGGCTTTATTCCAATAAGG+AGG | 0.589582 | 2_1:+43004543 | None:intergenic |
| ACATACCAAGAGTGATGACT+TGG | 0.596302 | 2_1:+43008894 | None:intergenic |
| CAATAATCCTACAGATGACA+GGG | 0.602238 | 2_1:-43006077 | Msa0208310:CDS |
| ACGAATTGGATCCTTGCTCA+TGG | 0.603335 | 2_1:+43008095 | None:intergenic |
| GGTCCACGAAGGTCAAGATA+CGG | 0.607507 | 2_1:-43006393 | Msa0208310:CDS |
| TATAACTGGAACTGAATCGC+CGG | 0.628126 | 2_1:-43008715 | Msa0208310:CDS |
| AATTCGTTCAGGAGACATTG+TGG | 0.628702 | 2_1:-43008079 | Msa0208310:CDS |
| GAGACTAAAACCCGTAAACA+GGG | 0.638692 | 2_1:-43009156 | None:intergenic |
| GTCTGAAACCCAACCCATTG+CGG | 0.641477 | 2_1:+43008961 | None:intergenic |
| TACAAAACCCTGTCATCTGT+AGG | 0.643827 | 2_1:+43006070 | None:intergenic |
| TCATACATACCTTAATCACA+CGG | 0.700890 | 2_1:+43006839 | None:intergenic |
| GTTAAAGGGAGACAGTGCTG+TGG | 0.707765 | 2_1:+43009131 | None:intergenic |
| TGCGGAATTGAAATCAAACG+AGG | 0.737955 | 2_1:+43008979 | None:intergenic |
| ATGTACTAGTAGGAGCACTG+GGG | 0.787046 | 2_1:-43004683 | Msa0208310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTGCAATATATTTAT+AGG | + | chr2_1:43004437-43004456 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAATTTGTTTC+AGG | - | chr2_1:43004752-43004771 | Msa0208310:intron | 10.0% |
| !!! | TTTTTATTTAATTTGTTTCA+GGG | - | chr2_1:43004753-43004772 | Msa0208310:intron | 10.0% |
| !!! | ATATTTTTTATGATTAATTG+GGG | - | chr2_1:43005562-43005581 | Msa0208310:intron | 10.0% |
| !!! | TTAATTAATTCAATTTTCTA+GGG | - | chr2_1:43008222-43008241 | Msa0208310:intron | 10.0% |
| !! | ATAATTCTTATATATTGAAT+TGG | + | chr2_1:43009014-43009033 | None:intergenic | 10.0% |
| !!! | TTTTTAAACATTTTCTTTAC+TGG | + | chr2_1:43006091-43006110 | None:intergenic | 15.0% |
| !!! | TATAATAATGTATTGTTGTT+TGG | - | chr2_1:43006490-43006509 | Msa0208310:intron | 15.0% |
| !!! | TTATTTTTATAAACCAGAAA+AGG | - | chr2_1:43006543-43006562 | Msa0208310:intron | 15.0% |
| !!! | CTTAATTAATTCAATTTTCT+AGG | - | chr2_1:43008221-43008240 | Msa0208310:intron | 15.0% |
| !!! | TTAAATGTTAGTTTTGATAT+AGG | + | chr2_1:43008802-43008821 | None:intergenic | 15.0% |
| !! | ATATAAGAATTATTGTTTGA+TGG | - | chr2_1:43009021-43009040 | Msa0208310:five_prime_UTR | 15.0% |
| !!! | AAATTGATTTTTAAAAACCA+TGG | + | chr2_1:43009087-43009106 | None:intergenic | 15.0% |
| !! | TTCTTCAATTCATTATACAT+CGG | - | chr2_1:43004665-43004684 | Msa0208310:CDS | 20.0% |
| !! | ATTAATTAAGTATTTGTGTG+TGG | - | chr2_1:43004717-43004736 | Msa0208310:intron | 20.0% |
| !! | ATAAAATAATGCTTACTCTT+TGG | + | chr2_1:43004883-43004902 | None:intergenic | 20.0% |
| !! | TTATTTATATGTTTCGGATT+GGG | + | chr2_1:43005298-43005317 | None:intergenic | 20.0% |
| !! | TTTATTTATATGTTTCGGAT+TGG | + | chr2_1:43005299-43005318 | None:intergenic | 20.0% |
| !!! | ATGGTTTTAATAAAAACTTG+TGG | - | chr2_1:43005381-43005400 | Msa0208310:intron | 20.0% |
| !! | AACAAAGATTCATCAATTAA+TGG | + | chr2_1:43005508-43005527 | None:intergenic | 20.0% |
| !!! | TCAATACATTTCAAGAATTT+TGG | - | chr2_1:43005938-43005957 | Msa0208310:intron | 20.0% |
| !! | GTCAACATGTTAAAATAATT+TGG | + | chr2_1:43006737-43006756 | None:intergenic | 20.0% |
| !!! | TCTAAAGATTCTCAATATTT+TGG | - | chr2_1:43006811-43006830 | Msa0208310:intron | 20.0% |
| !! | TTATGAGTTCCATTTATTAA+AGG | + | chr2_1:43006880-43006899 | None:intergenic | 20.0% |
| !! | TAAAATAACATCCACAAATT+AGG | + | chr2_1:43007117-43007136 | None:intergenic | 20.0% |
| !!! | TGTGGATGTTATTTTATTTT+AGG | - | chr2_1:43007121-43007140 | Msa0208310:intron | 20.0% |
| !! | TAAGAAAAGAAAAAGCAAAA+TGG | + | chr2_1:43007283-43007302 | None:intergenic | 20.0% |
| !! | TATTGAAAATGAAATTAGAG+AGG | - | chr2_1:43007729-43007748 | Msa0208310:intron | 20.0% |
| !! | ATTGAAAATGAAATTAGAGA+GGG | - | chr2_1:43007730-43007749 | Msa0208310:intron | 20.0% |
| !! | AACTACATTGATATTTATTC+AGG | - | chr2_1:43008395-43008414 | Msa0208310:intron | 20.0% |
| !!! | TGTTGTTTTCTATACAAAAA+AGG | - | chr2_1:43008527-43008546 | Msa0208310:intron | 20.0% |
| !! | TTACACATAATAGAATTAGA+AGG | + | chr2_1:43008644-43008663 | None:intergenic | 20.0% |
| !! | TCTATTATGTGTAAAACTAT+AGG | - | chr2_1:43008650-43008669 | Msa0208310:intron | 20.0% |
| !! | CTATTATGTGTAAAACTATA+GGG | - | chr2_1:43008651-43008670 | Msa0208310:intron | 20.0% |
| !! | TATTATGTGTAAAACTATAG+GGG | - | chr2_1:43008652-43008671 | Msa0208310:intron | 20.0% |
| !! | TTTAAATTCAAAATGACAGT+TGG | + | chr2_1:43009128-43009147 | None:intergenic | 20.0% |
| ! | TTATAGGTGAGTTAGTTAAA+GGG | + | chr2_1:43004421-43004440 | None:intergenic | 25.0% |
| ! | TTTATAGGTGAGTTAGTTAA+AGG | + | chr2_1:43004422-43004441 | None:intergenic | 25.0% |
| ! | TAATGCAATGTGTGATATAT+AGG | + | chr2_1:43004470-43004489 | None:intergenic | 25.0% |
| ! | CTCAATTCTATAAAATACCT+TGG | - | chr2_1:43004504-43004523 | Msa0208310:three_prime_UTR | 25.0% |
| ! | AATAAATCAAAAATCGACCA+AGG | + | chr2_1:43004524-43004543 | None:intergenic | 25.0% |
| ! | TAACATCGGCATTAATAATA+TGG | - | chr2_1:43004783-43004802 | Msa0208310:intron | 25.0% |
| ! | ATTATTATATTGATCCAGAG+TGG | - | chr2_1:43004907-43004926 | Msa0208310:intron | 25.0% |
| ! | TTTCAAATAGAAACCCTAAT+TGG | - | chr2_1:43005123-43005142 | Msa0208310:intron | 25.0% |
| !!! | TGAGTTTTGAGATTTTATGT+TGG | - | chr2_1:43005354-43005373 | Msa0208310:intron | 25.0% |
| !!! | GAGATTTTATGTTGGTTTTA+TGG | - | chr2_1:43005362-43005381 | Msa0208310:intron | 25.0% |
| ! | ATAAAAACTTGTGGTTGATT+TGG | - | chr2_1:43005390-43005409 | Msa0208310:intron | 25.0% |
| !! | TCTCATGTTATATTGACTAA+TGG | - | chr2_1:43005671-43005690 | Msa0208310:intron | 25.0% |
| !! | CTATGAAATTGGAAGTATAA+GGG | + | chr2_1:43005977-43005996 | None:intergenic | 25.0% |
| !! | ACTATGAAATTGGAAGTATA+AGG | + | chr2_1:43005978-43005997 | None:intergenic | 25.0% |
| ! | AAATACCTTTGCTTTCAATT+TGG | - | chr2_1:43006171-43006190 | Msa0208310:intron | 25.0% |
| ! | ACTTATATCTCTCGATAAAA+TGG | + | chr2_1:43006262-43006281 | None:intergenic | 25.0% |
| ! | GATCATAATTCAATACATGA+TGG | + | chr2_1:43006430-43006449 | None:intergenic | 25.0% |
| ! | CATTTCATAAACACATTGAA+TGG | + | chr2_1:43006569-43006588 | None:intergenic | 25.0% |
| ! | GATACTTATTACCTTACTAA+AGG | - | chr2_1:43007167-43007186 | Msa0208310:intron | 25.0% |
| !! | ATTATAATTTGCGCAAACAT+TGG | + | chr2_1:43007198-43007217 | None:intergenic | 25.0% |
| !! | TTGCAGAAAAAGCATATTAT+GGG | - | chr2_1:43007507-43007526 | Msa0208310:intron | 25.0% |
| !! | GTAAATGTTTTTCTTTGTTG+TGG | - | chr2_1:43007542-43007561 | Msa0208310:intron | 25.0% |
| ! | GTACACAATAAATAAGTGAT+AGG | + | chr2_1:43007617-43007636 | None:intergenic | 25.0% |
| ! | ACTTATTTATTGTGTACACA+AGG | - | chr2_1:43007620-43007639 | Msa0208310:intron | 25.0% |
| ! | ATAAACGATTCAACTAATGA+GGG | + | chr2_1:43007667-43007686 | None:intergenic | 25.0% |
| ! | AATAAACGATTCAACTAATG+AGG | + | chr2_1:43007668-43007687 | None:intergenic | 25.0% |
| ! | TGTATTCTCTTCTTAATCAA+TGG | - | chr2_1:43007804-43007823 | Msa0208310:intron | 25.0% |
| ! | AAAAGATTACACTGATCAAT+TGG | + | chr2_1:43007989-43008008 | None:intergenic | 25.0% |
| !!! | TAATTCAATTTTCTAGGGAT+AGG | - | chr2_1:43008227-43008246 | Msa0208310:intron | 25.0% |
| !! | AAAGAACAAACCTTGATAAT+AGG | + | chr2_1:43008466-43008485 | None:intergenic | 25.0% |
| ! | CATTTAAACAGAGAATTAAG+AGG | - | chr2_1:43008685-43008704 | Msa0208310:CDS | 25.0% |
| ! | AAAATAGTCGAAAAAGAAGA+AGG | + | chr2_1:43008746-43008765 | None:intergenic | 25.0% |
| ! | TTTGATTTCAATTCCGCAAT+GGG | - | chr2_1:43004561-43004580 | Msa0208310:three_prime_UTR | 30.0% |
| !! | TCTGAGTTTAATTGACTTGA+CGG | + | chr2_1:43004610-43004629 | None:intergenic | 30.0% |
| TCGGCATTAATAATATGGAA+AGG | - | chr2_1:43004788-43004807 | Msa0208310:intron | 30.0% | |
| CGGCATTAATAATATGGAAA+GGG | - | chr2_1:43004789-43004808 | Msa0208310:intron | 30.0% | |
| AAAGGGTTAATGTGTATAAC+TGG | - | chr2_1:43004806-43004825 | Msa0208310:intron | 30.0% | |
| ! | TTAGCCTTTATAGGAGAATT+AGG | - | chr2_1:43005097-43005116 | Msa0208310:CDS | 30.0% |
| TAGCCTTTATAGGAGAATTA+GGG | - | chr2_1:43005098-43005117 | Msa0208310:CDS | 30.0% | |
| AAACCCTAATTCTCCTATAA+AGG | + | chr2_1:43005104-43005123 | None:intergenic | 30.0% | |
| AAATAGAAACCCTAATTGGA+CGG | - | chr2_1:43005127-43005146 | Msa0208310:intron | 30.0% | |
| TGTTGTCAAAATGTATGTGT+TGG | + | chr2_1:43005633-43005652 | None:intergenic | 30.0% | |
| ! | TATATTGACTAATGGAATGC+CGG | - | chr2_1:43005679-43005698 | Msa0208310:intron | 30.0% |
| !! | CTAAACTTGTTGTCAAATAG+CGG | + | chr2_1:43005905-43005924 | None:intergenic | 30.0% |
| CTTTCAATTTGGTTGACTAA+TGG | - | chr2_1:43006182-43006201 | Msa0208310:intron | 30.0% | |
| ACCTATGCTGCTAAATATAA+GGG | + | chr2_1:43006370-43006389 | None:intergenic | 30.0% | |
| TCAGACTTACTAAAGATAAG+GGG | + | chr2_1:43006403-43006422 | None:intergenic | 30.0% | |
| CTCAGACTTACTAAAGATAA+GGG | + | chr2_1:43006404-43006423 | None:intergenic | 30.0% | |
| !! | ATTCTTTGAAGTACAAGACA+GGG | + | chr2_1:43006461-43006480 | None:intergenic | 30.0% |
| !! | AATTCTTTGAAGTACAAGAC+AGG | + | chr2_1:43006462-43006481 | None:intergenic | 30.0% |
| TCTTGTACTTCAAAGAATTG+AGG | - | chr2_1:43006463-43006482 | Msa0208310:intron | 30.0% | |
| CTTGTACTTCAAAGAATTGA+GGG | - | chr2_1:43006464-43006483 | Msa0208310:intron | 30.0% | |
| TAAATATCCACTCATTGTAC+AGG | - | chr2_1:43006651-43006670 | Msa0208310:intron | 30.0% | |
| AAATATCCACTCATTGTACA+GGG | - | chr2_1:43006652-43006671 | Msa0208310:intron | 30.0% | |
| TCATACATACCTTAATCACA+CGG | + | chr2_1:43006699-43006718 | None:intergenic | 30.0% | |
| TAAGTCATATATCTTCGAAG+AGG | - | chr2_1:43006766-43006785 | Msa0208310:intron | 30.0% | |
| !! | TTACTGATTCAATGAACCAT+GGG | + | chr2_1:43006849-43006868 | None:intergenic | 30.0% |
| !! | TTTACTGATTCAATGAACCA+TGG | + | chr2_1:43006850-43006869 | None:intergenic | 30.0% |
| AAGCTGAAGCCTTTAATAAA+TGG | - | chr2_1:43006868-43006887 | Msa0208310:intron | 30.0% | |
| CTTCAGAACATAGAGAATAA+TGG | - | chr2_1:43006901-43006920 | Msa0208310:intron | 30.0% | |
| TAGTATACATATTGATCTGC+TGG | - | chr2_1:43007045-43007064 | Msa0208310:intron | 30.0% | |
| TTCGTATATCACCTAATTTG+TGG | - | chr2_1:43007103-43007122 | Msa0208310:intron | 30.0% | |
| !!! | ATTTTATTTTAGGTCCACGA+AGG | - | chr2_1:43007131-43007150 | Msa0208310:intron | 30.0% |
| ! | CATTGGTTATACCTTTAGTA+AGG | + | chr2_1:43007181-43007200 | None:intergenic | 30.0% |
| ATATTTCAATTGTCAGCTGA+TGG | - | chr2_1:43007227-43007246 | Msa0208310:intron | 30.0% | |
| ACCATTACATTCAGTACTAT+TGG | - | chr2_1:43007315-43007334 | Msa0208310:intron | 30.0% | |
| ! | ACCAATAGTACTGAATGTAA+TGG | + | chr2_1:43007319-43007338 | None:intergenic | 30.0% |
| !! | ATTGGTTTCTGGTTTGTAAT+TGG | - | chr2_1:43007333-43007352 | Msa0208310:intron | 30.0% |
| AATACATAACCGTGCATATA+AGG | + | chr2_1:43007430-43007449 | None:intergenic | 30.0% | |
| !! | GGTTTTGTACAATTATAACC+AGG | - | chr2_1:43007479-43007498 | Msa0208310:intron | 30.0% |
| TGTACAATTATAACCAGGAT+TGG | - | chr2_1:43007484-43007503 | Msa0208310:intron | 30.0% | |
| ! | GTTGCAGAAAAAGCATATTA+TGG | - | chr2_1:43007506-43007525 | Msa0208310:intron | 30.0% |
| AAGAAGATTAATCAATCTCC+AGG | + | chr2_1:43007778-43007797 | None:intergenic | 30.0% | |
| TTCTCTTCTTAATCAATGGT+TGG | - | chr2_1:43007808-43007827 | Msa0208310:intron | 30.0% | |
| TCTCTTCTTAATCAATGGTT+GGG | - | chr2_1:43007809-43007828 | Msa0208310:intron | 30.0% | |
| ! | ACATTTTATTGAGCAGATGA+AGG | - | chr2_1:43007878-43007897 | Msa0208310:intron | 30.0% |
| AATGCTAATCTCCAGAAAAA+GGG | + | chr2_1:43007942-43007961 | None:intergenic | 30.0% | |
| TAATGCTAATCTCCAGAAAA+AGG | + | chr2_1:43007943-43007962 | None:intergenic | 30.0% | |
| CCATTTACATTGTGGAATAA+TGG | + | chr2_1:43008119-43008138 | None:intergenic | 30.0% | |
| CCATTATTCCACAATGTAAA+TGG | - | chr2_1:43008116-43008135 | Msa0208310:CDS | 30.0% | |
| TGTAAATGGTTGTTTGCTTA+TGG | - | chr2_1:43008130-43008149 | Msa0208310:intron | 30.0% | |
| TTGCTTATGGAGATAAATCA+AGG | - | chr2_1:43008143-43008162 | Msa0208310:intron | 30.0% | |
| ACATCAGAAGCAAAAAGAAA+TGG | + | chr2_1:43008321-43008340 | None:intergenic | 30.0% | |
| GTCTGAAAAACCTATTATCA+AGG | - | chr2_1:43008453-43008472 | Msa0208310:intron | 30.0% | |
| CTATTTGAAGAAATCATTGC+TGG | - | chr2_1:43008494-43008513 | Msa0208310:intron | 30.0% | |
| CTTCAACAAGATACTAAAGA+GGG | + | chr2_1:43008590-43008609 | None:intergenic | 30.0% | |
| ACTTCAACAAGATACTAAAG+AGG | + | chr2_1:43008591-43008610 | None:intergenic | 30.0% | |
| ATGTATGTGTAATTGAGAGA+AGG | + | chr2_1:43008620-43008639 | None:intergenic | 30.0% | |
| TTAAACAGAGAATTAAGAGG+AGG | - | chr2_1:43008688-43008707 | Msa0208310:CDS | 30.0% | |
| ! | TTTCGACTATTTTCTCTCTT+TGG | - | chr2_1:43008753-43008772 | Msa0208310:CDS | 30.0% |
| !! | GAATTGGCTTTATTCCAATA+AGG | + | chr2_1:43008998-43009017 | None:intergenic | 30.0% |
| ! | GTTTGATTTCAATTCCGCAA+TGG | - | chr2_1:43004560-43004579 | Msa0208310:three_prime_UTR | 35.0% |
| TTCAGGGATGATTGTAACAT+CGG | - | chr2_1:43004769-43004788 | Msa0208310:intron | 35.0% | |
| !! | GTTACAGAGTTAGCCTTTAT+AGG | - | chr2_1:43005088-43005107 | Msa0208310:CDS | 35.0% |
| ATGATGTGATCATGATCACA+CGG | - | chr2_1:43005155-43005174 | Msa0208310:intron | 35.0% | |
| CAAGTCCGAAGATACAATTA+GGG | + | chr2_1:43005181-43005200 | None:intergenic | 35.0% | |
| GAGCTACGTTACTATGAAAT+TGG | + | chr2_1:43005988-43006007 | None:intergenic | 35.0% | |
| !! | TTGAAAGCAAAGGTATTTCC+AGG | + | chr2_1:43006169-43006188 | None:intergenic | 35.0% |
| GTCAACCAAATTGAAAGCAA+AGG | + | chr2_1:43006179-43006198 | None:intergenic | 35.0% | |
| GAGATATAAGTACAAGCTAC+TGG | - | chr2_1:43006271-43006290 | Msa0208310:intron | 35.0% | |
| GCTGCTAAATATAAGGGAAA+AGG | + | chr2_1:43006364-43006383 | None:intergenic | 35.0% | |
| TCCCTTATATTTAGCAGCAT+AGG | - | chr2_1:43006366-43006385 | Msa0208310:intron | 35.0% | |
| CACCTATGCTGCTAAATATA+AGG | + | chr2_1:43006371-43006390 | None:intergenic | 35.0% | |
| AGACTTACTAAAGATAAGGG+GGG | + | chr2_1:43006401-43006420 | None:intergenic | 35.0% | |
| CAGACTTACTAAAGATAAGG+GGG | + | chr2_1:43006402-43006421 | None:intergenic | 35.0% | |
| CCTCAGACTTACTAAAGATA+AGG | + | chr2_1:43006405-43006424 | None:intergenic | 35.0% | |
| CCTTATCTTTAGTAAGTCTG+AGG | - | chr2_1:43006402-43006421 | Msa0208310:intron | 35.0% | |
| TTAATCACACGGTGAACAAT+TGG | + | chr2_1:43006688-43006707 | None:intergenic | 35.0% | |
| AATTGTTCACCGTGTGATTA+AGG | - | chr2_1:43006687-43006706 | Msa0208310:intron | 35.0% | |
| !! | AGAGGTGTTATGCACATAAA+TGG | - | chr2_1:43006784-43006803 | Msa0208310:intron | 35.0% |
| !! | TACTGATTCAATGAACCATG+GGG | + | chr2_1:43006848-43006867 | None:intergenic | 35.0% |
| ACAAGTTTGCATGTTGTACT+TGG | - | chr2_1:43006941-43006960 | Msa0208310:intron | 35.0% | |
| ! | ATTGATAATTGCAGAACCGA+AGG | - | chr2_1:43006992-43007011 | Msa0208310:intron | 35.0% |
| CTGATGGTTATCGCAATATA+CGG | - | chr2_1:43007243-43007262 | Msa0208310:intron | 35.0% | |
| !! | CATTCAGTACTATTGGTTTC+TGG | - | chr2_1:43007322-43007341 | Msa0208310:intron | 35.0% |
| TGTTCGATCATTGGATGTTA+AGG | + | chr2_1:43007398-43007417 | None:intergenic | 35.0% | |
| AAACGAGTATGTTCGATCAT+TGG | + | chr2_1:43007407-43007426 | None:intergenic | 35.0% | |
| TACTCGTTTCCTTATATGCA+CGG | - | chr2_1:43007418-43007437 | Msa0208310:intron | 35.0% | |
| TATGCACGGTTATGTATTTC+AGG | - | chr2_1:43007432-43007451 | Msa0208310:intron | 35.0% | |
| ACAATAATCCTACAGATGAC+AGG | - | chr2_1:43007457-43007476 | Msa0208310:intron | 35.0% | |
| CAATAATCCTACAGATGACA+GGG | - | chr2_1:43007458-43007477 | Msa0208310:intron | 35.0% | |
| GAGAATCCATTAAAAGCTAG+AGG | - | chr2_1:43007693-43007712 | Msa0208310:intron | 35.0% | |
| !!! | CAAGATCCTCTAGCTTTTAA+TGG | + | chr2_1:43007702-43007721 | None:intergenic | 35.0% |
| TAATCAATCTCCAGGTATTC+AGG | + | chr2_1:43007770-43007789 | None:intergenic | 35.0% | |
| TTAATCAATGGTTGGGATGT+TGG | - | chr2_1:43007816-43007835 | Msa0208310:intron | 35.0% | |
| GCAAACAACCATTTACATTG+TGG | + | chr2_1:43008127-43008146 | None:intergenic | 35.0% | |
| !! | ATTTTCTAGGGATAGGAATG+AGG | - | chr2_1:43008234-43008253 | Msa0208310:intron | 35.0% |
| ATGAGGAGCTAGTTAATATC+TGG | - | chr2_1:43008251-43008270 | Msa0208310:intron | 35.0% | |
| AAGGAGAATGCGATTGAAAA+AGG | + | chr2_1:43008727-43008746 | None:intergenic | 35.0% | |
| !! | GGTTTTGACATCAAAGGAAT+AGG | - | chr2_1:43008880-43008899 | Msa0208310:intron | 35.0% |
| TTTCATCATTGCCTCCTTAT+TGG | - | chr2_1:43008981-43009000 | Msa0208310:five_prime_UTR | 35.0% | |
| !! | TTGGCTTTATTCCAATAAGG+AGG | + | chr2_1:43008995-43009014 | None:intergenic | 35.0% |
| !! | GAATTATTGTTTGATGGCGT+TGG | - | chr2_1:43009027-43009046 | Msa0208310:five_prime_UTR | 35.0% |
| GTTTCCTCATTACTAATCCT+TGG | + | chr2_1:43009053-43009072 | None:intergenic | 35.0% | |
| TGCGGAATTGAAATCAAACG+AGG | + | chr2_1:43004559-43004578 | None:intergenic | 40.0% | |
| ATTTCAATTCCGCAATGGGT+TGG | - | chr2_1:43004565-43004584 | Msa0208310:three_prime_UTR | 40.0% | |
| ! | TTTCAATTCCGCAATGGGTT+GGG | - | chr2_1:43004566-43004585 | Msa0208310:three_prime_UTR | 40.0% |
| ACATACCAAGAGTGATGACT+TGG | + | chr2_1:43004644-43004663 | None:intergenic | 40.0% | |
| TATAACTGGAACTGAATCGC+CGG | - | chr2_1:43004820-43004839 | Msa0208310:intron | 40.0% | |
| ! | TGTTGTTCTTTCTGGAAGCA+TGG | - | chr2_1:43004847-43004866 | Msa0208310:intron | 40.0% |
| ! | ATGCTTACTCTTTGGAAACC+AGG | + | chr2_1:43004875-43004894 | None:intergenic | 40.0% |
| TGGAACTTGACCTTGATTGA+AGG | - | chr2_1:43004927-43004946 | Msa0208310:intron | 40.0% | |
| ATCTCTCAAGCCTTCAATCA+AGG | + | chr2_1:43004940-43004959 | None:intergenic | 40.0% | |
| TTGATTGAAGGCTTGAGAGA+TGG | - | chr2_1:43004939-43004958 | Msa0208310:intron | 40.0% | |
| TGATTGAAGGCTTGAGAGAT+GGG | - | chr2_1:43004940-43004959 | Msa0208310:intron | 40.0% | |
| TCATGAAAGCCGTCCAATTA+GGG | + | chr2_1:43005139-43005158 | None:intergenic | 40.0% | |
| ATCATGAAAGCCGTCCAATT+AGG | + | chr2_1:43005140-43005159 | None:intergenic | 40.0% | |
| GCAAGTCCGAAGATACAATT+AGG | + | chr2_1:43005182-43005201 | None:intergenic | 40.0% | |
| ! | TTGTATCTTCGGACTTGCTT+AGG | - | chr2_1:43005184-43005203 | Msa0208310:intron | 40.0% |
| TCCATAGCATAGTCTGTAGT+GGG | - | chr2_1:43005224-43005243 | Msa0208310:intron | 40.0% | |
| ! | CTGTTGGTCTCTTGTTGATA+GGG | - | chr2_1:43005267-43005286 | Msa0208310:intron | 40.0% |
| !! | TGTGGTTGATTTGGTCTTAC+AGG | - | chr2_1:43005399-43005418 | Msa0208310:intron | 40.0% |
| !! | GTGGTTGATTTGGTCTTACA+GGG | - | chr2_1:43005400-43005419 | Msa0208310:intron | 40.0% |
| TTTGTTCTTGACCATGAGCA+AGG | - | chr2_1:43005429-43005448 | Msa0208310:intron | 40.0% | |
| ACAATGTCTCCTGAACGAAT+TGG | + | chr2_1:43005457-43005476 | None:intergenic | 40.0% | |
| AATTCGTTCAGGAGACATTG+TGG | - | chr2_1:43005456-43005475 | Msa0208310:intron | 40.0% | |
| ACATCAGTGCTATATCACTG+TGG | + | chr2_1:43005785-43005804 | None:intergenic | 40.0% | |
| !! | AGAATTTTGGTGACATCGCT+AGG | - | chr2_1:43005951-43005970 | Msa0208310:intron | 40.0% |
| ! | TGTTGTTTAGAGCCTTACTG+AGG | - | chr2_1:43006045-43006064 | Msa0208310:CDS | 40.0% |
| GACTTACTAAAGATAAGGGG+GGG | + | chr2_1:43006400-43006419 | None:intergenic | 40.0% | |
| AGTACAAGACAGGGAGAAAT+AGG | + | chr2_1:43006452-43006471 | None:intergenic | 40.0% | |
| ! | ACACATTGAATGGCCTTTTC+TGG | + | chr2_1:43006559-43006578 | None:intergenic | 40.0% |
| TGTTTATGAAATGTGCGCGT+TGG | - | chr2_1:43006576-43006595 | Msa0208310:intron | 40.0% | |
| !! | TTGGTAATCATTTTCCCCCA+TGG | - | chr2_1:43006830-43006849 | Msa0208310:intron | 40.0% |
| ! | ACTGATTCAATGAACCATGG+GGG | + | chr2_1:43006847-43006866 | None:intergenic | 40.0% |
| AAGTTCATGTAGTGAGCCTT+CGG | + | chr2_1:43007011-43007030 | None:intergenic | 40.0% | |
| TCGATCATTGGATGTTAAGG+AGG | + | chr2_1:43007395-43007414 | None:intergenic | 40.0% | |
| TACAAAACCCTGTCATCTGT+AGG | + | chr2_1:43007468-43007487 | None:intergenic | 40.0% | |
| CATATTATGGGAAGAGCTGT+CGG | - | chr2_1:43007519-43007538 | Msa0208310:intron | 40.0% | |
| ATATTATGGGAAGAGCTGTC+GGG | - | chr2_1:43007520-43007539 | Msa0208310:intron | 40.0% | |
| AAAGCTAGAGGATCTTGTCT+TGG | - | chr2_1:43007705-43007724 | Msa0208310:intron | 40.0% | |
| TTTCATGTCTCCTGAATACC+TGG | - | chr2_1:43007757-43007776 | Msa0208310:intron | 40.0% | |
| ! | TACACATACCTCCCTTTTTC+TGG | - | chr2_1:43007928-43007947 | Msa0208310:intron | 40.0% |
| TAGTCCTGTTTGTACTCTGT+TGG | - | chr2_1:43008029-43008048 | Msa0208310:intron | 40.0% | |
| AGTCCTGTTTGTACTCTGTT+GGG | - | chr2_1:43008030-43008049 | Msa0208310:intron | 40.0% | |
| AAACCCAACAGAGTACAAAC+AGG | + | chr2_1:43008036-43008055 | None:intergenic | 40.0% | |
| TTCTTCCCATTTAGCTATCC+TGG | - | chr2_1:43008085-43008104 | Msa0208310:CDS | 40.0% | |
| TTGCACCAGGATAGCTAAAT+GGG | + | chr2_1:43008093-43008112 | None:intergenic | 40.0% | |
| TTTGCACCAGGATAGCTAAA+TGG | + | chr2_1:43008094-43008113 | None:intergenic | 40.0% | |
| !!! | GGAATAATGGATTTTGCACC+AGG | + | chr2_1:43008106-43008125 | None:intergenic | 40.0% |
| ! | TTCAGGTTCTTACCTTATGC+TGG | - | chr2_1:43008412-43008431 | Msa0208310:intron | 40.0% |
| ! | GTTCTTACCTTATGCTGGTT+GGG | - | chr2_1:43008417-43008436 | Msa0208310:intron | 40.0% |
| TCCTTGCAGTATGTACTAGT+AGG | - | chr2_1:43008842-43008861 | Msa0208310:intron | 40.0% | |
| TCCTACTAGTACATACTGCA+AGG | + | chr2_1:43008846-43008865 | None:intergenic | 40.0% | |
| !! | TATGTACTAGTAGGAGCACT+GGG | - | chr2_1:43008851-43008870 | Msa0208310:intron | 40.0% |
| ! | TTGGCCAAGGATTAGTAATG+AGG | - | chr2_1:43009046-43009065 | Msa0208310:five_prime_UTR | 40.0% |
| TTGCACCAAGTCATCACTCT+TGG | - | chr2_1:43004636-43004655 | Msa0208310:three_prime_UTR | 45.0% | |
| CCAGAAAGAACAACAACGAC+CGG | + | chr2_1:43004842-43004861 | None:intergenic | 45.0% | |
| ATCAAGGTCAAGTTCCACTC+TGG | + | chr2_1:43004924-43004943 | None:intergenic | 45.0% | |
| ACACTCCGACGATCACTAAA+CGG | - | chr2_1:43005011-43005030 | Msa0208310:intron | 45.0% | |
| TCTCTCCGTTTAGTGATCGT+CGG | + | chr2_1:43005019-43005038 | None:intergenic | 45.0% | |
| CACGGCCCTAATTGTATCTT+CGG | - | chr2_1:43005173-43005192 | Msa0208310:intron | 45.0% | |
| ATGCTATGGACATACCCTAG+AGG | + | chr2_1:43005214-43005233 | None:intergenic | 45.0% | |
| GTCCATAGCATAGTCTGTAG+TGG | - | chr2_1:43005223-43005242 | Msa0208310:intron | 45.0% | |
| ACCCACTACAGACTATGCTA+TGG | + | chr2_1:43005228-43005247 | None:intergenic | 45.0% | |
| CCTATCAACAAGAGACCAAC+AGG | + | chr2_1:43005269-43005288 | None:intergenic | 45.0% | |
| ! | CCTGTTGGTCTCTTGTTGAT+AGG | - | chr2_1:43005266-43005285 | Msa0208310:intron | 45.0% |
| ! | GGTCTCTTGTTGATAGGGTT+TGG | - | chr2_1:43005272-43005291 | Msa0208310:intron | 45.0% |
| ACGAATTGGATCCTTGCTCA+TGG | + | chr2_1:43005443-43005462 | None:intergenic | 45.0% | |
| AGCAAGGATCCAATTCGTTC+AGG | - | chr2_1:43005445-43005464 | Msa0208310:intron | 45.0% | |
| ATGCCGGTCTAGGTTGTTTA+TGG | - | chr2_1:43005695-43005714 | Msa0208310:intron | 45.0% | |
| TGCCGGTCTAGGTTGTTTAT+GGG | - | chr2_1:43005696-43005715 | Msa0208310:intron | 45.0% | |
| GACCCATAAACAACCTAGAC+CGG | + | chr2_1:43005701-43005720 | None:intergenic | 45.0% | |
| TTGTACCCAACAGTGTGTCA+CGG | - | chr2_1:43005823-43005842 | Msa0208310:intron | 45.0% | |
| TTGTTCCGTGACACACTGTT+GGG | + | chr2_1:43005831-43005850 | None:intergenic | 45.0% | |
| ATTGTTCCGTGACACACTGT+TGG | + | chr2_1:43005832-43005851 | None:intergenic | 45.0% | |
| ! | ATATCACGCTAGCCTCAGTA+AGG | + | chr2_1:43006060-43006079 | None:intergenic | 45.0% |
| ! | CCAGGTAGTGGTTGTGTTAT+AGG | + | chr2_1:43006151-43006170 | None:intergenic | 45.0% |
| CCTATAACACAACCACTACC+TGG | - | chr2_1:43006148-43006167 | Msa0208310:intron | 45.0% | |
| !! | GCAAAGGTATTTCCAGGTAG+TGG | + | chr2_1:43006163-43006182 | None:intergenic | 45.0% |
| !!! | TGAAATGTGCGCGTTGGTTT+TGG | - | chr2_1:43006582-43006601 | Msa0208310:intron | 45.0% |
| !! | GCTTTTTCTGCAACCAATCC+TGG | + | chr2_1:43007500-43007519 | None:intergenic | 45.0% |
| GTTGGCTAACCTCATTGGTA+CGG | - | chr2_1:43007834-43007853 | Msa0208310:intron | 45.0% | |
| GCTAATCTCCAGAAAAAGGG+AGG | + | chr2_1:43007939-43007958 | None:intergenic | 45.0% | |
| GGTTCTTACCTTATGCTGGT+TGG | - | chr2_1:43008416-43008435 | Msa0208310:intron | 45.0% | |
| ATTGTAGCCCAACCAGCATA+AGG | + | chr2_1:43008427-43008446 | None:intergenic | 45.0% | |
| ! | GTATGTACTAGTAGGAGCAC+TGG | - | chr2_1:43008850-43008869 | Msa0208310:intron | 45.0% |
| !! | ATGTACTAGTAGGAGCACTG+GGG | - | chr2_1:43008852-43008871 | Msa0208310:intron | 45.0% |
| !!! | GCTGCTGGTTTTGACATCAA+AGG | - | chr2_1:43008874-43008893 | Msa0208310:intron | 45.0% |
| !! | GGAAACTGCTTTTGTTGCCA+TGG | - | chr2_1:43009067-43009086 | Msa0208310:five_prime_UTR | 45.0% |
| !!! | TTTAATTTATTTATATGTTT+CGG | + | chr2_1:43005304-43005323 | None:intergenic | 5.0% |
| !!! | AAATATTTTTTATGATTAAT+TGG | - | chr2_1:43005560-43005579 | Msa0208310:intron | 5.0% |
| !!! | AATATTTTTTATGATTAATT+GGG | - | chr2_1:43005561-43005580 | Msa0208310:intron | 5.0% |
| TGCTGTGGATCCCTGTTTAC+GGG | + | chr2_1:43004392-43004411 | None:intergenic | 50.0% | |
| GTGCTGTGGATCCCTGTTTA+CGG | + | chr2_1:43004393-43004412 | None:intergenic | 50.0% | |
| GTTAAAGGGAGACAGTGCTG+TGG | + | chr2_1:43004407-43004426 | None:intergenic | 50.0% | |
| ! | GTCTGAAACCCAACCCATTG+CGG | + | chr2_1:43004577-43004596 | None:intergenic | 50.0% |
| ! | CCGGTCGTTGTTGTTCTTTC+TGG | - | chr2_1:43004839-43004858 | Msa0208310:intron | 50.0% |
| ! | CTTTCTGGAAGCATGGAACC+TGG | - | chr2_1:43004854-43004873 | Msa0208310:intron | 50.0% |
| GACGATCACTAAACGGAGAG+AGG | - | chr2_1:43005018-43005037 | Msa0208310:intron | 50.0% | |
| TCACTAAACGGAGAGAGGAG+AGG | - | chr2_1:43005023-43005042 | Msa0208310:intron | 50.0% | |
| ! | CGGAGAGAGGAGAGGTTTTA+TGG | - | chr2_1:43005031-43005050 | Msa0208310:intron | 50.0% |
| ACTTGCTTAGGTGTGCCTCT+AGG | - | chr2_1:43005196-43005215 | Msa0208310:intron | 50.0% | |
| CTTGCTTAGGTGTGCCTCTA+GGG | - | chr2_1:43005197-43005216 | Msa0208310:intron | 50.0% | |
| GACTAATGGAATGCCGGTCT+AGG | - | chr2_1:43005685-43005704 | Msa0208310:intron | 50.0% | |
| GCTATATCACTGTGGCGTAG+CGG | + | chr2_1:43005777-43005796 | None:intergenic | 50.0% | |
| TCACGTCCCTGTACAATGAG+TGG | + | chr2_1:43006661-43006680 | None:intergenic | 50.0% | |
| GGTCCACGAAGGTCAAGATA+CGG | - | chr2_1:43007142-43007161 | Msa0208310:intron | 50.0% | |
| CTTCCGTATCTTGACCTTCG+TGG | + | chr2_1:43007148-43007167 | None:intergenic | 50.0% | |
| ! | GGGATGTTGGCTAACCTCAT+TGG | - | chr2_1:43007829-43007848 | Msa0208310:intron | 50.0% |
| CTCTCGTTACCGTACCAATG+AGG | + | chr2_1:43007846-43007865 | None:intergenic | 50.0% | |
| AGCATTATCTGCCAGTCAGC+AGG | - | chr2_1:43007956-43007975 | Msa0208310:intron | 50.0% | |
| GCATTATCTGCCAGTCAGCA+GGG | - | chr2_1:43007957-43007976 | Msa0208310:intron | 50.0% | |
| TTGGTTGAAACCCTGCTGAC+TGG | + | chr2_1:43007970-43007989 | None:intergenic | 50.0% | |
| !! | TTGTTTGATGGCGTTGGCCA+AGG | - | chr2_1:43009033-43009052 | Msa0208310:five_prime_UTR | 50.0% |
| ! | GAGAGATGGGAGATTAGCCG+AGG | - | chr2_1:43004953-43004972 | Msa0208310:intron | 55.0% |
| ! | GATGGGAGATTAGCCGAGGA+CGG | - | chr2_1:43004957-43004976 | Msa0208310:intron | 55.0% |
| ! | TTGCAGGTCGGAGTGTTTCG+TGG | + | chr2_1:43004991-43005010 | None:intergenic | 55.0% |
| ! | TCGTCGGAGTGTTTGCAGGT+CGG | + | chr2_1:43005003-43005022 | None:intergenic | 55.0% |
| ! | GTGATCGTCGGAGTGTTTGC+AGG | + | chr2_1:43005007-43005026 | None:intergenic | 55.0% |
| TACCTTCGCGGAAGACCTGT+TGG | - | chr2_1:43005251-43005270 | Msa0208310:intron | 55.0% | |
| ! | TCACTGTGGCGTAGCGGAAT+TGG | + | chr2_1:43005771-43005790 | None:intergenic | 55.0% |
| ! | CAGGTCGGAGTGTTTCGTGG+AGG | + | chr2_1:43004988-43005007 | None:intergenic | 60.0% |
| !! | GTAGTGGGTCGCTACCTTCG+CGG | - | chr2_1:43005239-43005258 | Msa0208310:intron | 60.0% |
| GACCAACAGGTCTTCCGCGA+AGG | + | chr2_1:43005256-43005275 | None:intergenic | 60.0% | |
| AGCGGCAGTAGTGACGCTAG+AGG | + | chr2_1:43005887-43005906 | None:intergenic | 60.0% | |
| !! | AGTAGGAGCACTGGGGCTGC+TGG | - | chr2_1:43008859-43008878 | Msa0208310:intron | 65.0% |
| !! | CGTGGAGGCGCTTCCGTCCT+CGG | + | chr2_1:43004973-43004992 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 43004383 | 43009174 | 43004383 | ID=Msa0208310;Name=Msa0208310 |
| chr2_1 | mRNA | 43004383 | 43009174 | 43004383 | ID=Msa0208310-mRNA-1;Parent=Msa0208310;Name=Msa0208310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=196|1|1|1|1|1|8|273|180 |
| chr2_1 | exon | 43004383 | 43004706 | 43004383 | ID=Msa0208310-mRNA-1:exon:12823;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43005083 | 43005140 | 43005083 | ID=Msa0208310-mRNA-1:exon:12822;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43006016 | 43006103 | 43006016 | ID=Msa0208310-mRNA-1:exon:12821;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43006369 | 43006414 | 43006369 | ID=Msa0208310-mRNA-1:exon:12820;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43006849 | 43006884 | 43006849 | ID=Msa0208310-mRNA-1:exon:12819;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43008065 | 43008136 | 43008065 | ID=Msa0208310-mRNA-1:exon:12818;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43008671 | 43008783 | 43008671 | ID=Msa0208310-mRNA-1:exon:12817;Parent=Msa0208310-mRNA-1 |
| chr2_1 | exon | 43008900 | 43009174 | 43008900 | ID=Msa0208310-mRNA-1:exon:12816;Parent=Msa0208310-mRNA-1 |
| chr2_1 | five_prime_UTR | 43008979 | 43009174 | 43008979 | ID=Msa0208310-mRNA-1:five_prime_utr;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43008900 | 43008978 | 43008900 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43008671 | 43008783 | 43008671 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43008065 | 43008136 | 43008065 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43006849 | 43006884 | 43006849 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43006369 | 43006414 | 43006369 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43006016 | 43006103 | 43006016 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43005083 | 43005140 | 43005083 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | CDS | 43004656 | 43004706 | 43004656 | ID=Msa0208310-mRNA-1:cds;Parent=Msa0208310-mRNA-1 |
| chr2_1 | three_prime_UTR | 43004383 | 43004655 | 43004383 | ID=Msa0208310-mRNA-1:three_prime_utr;Parent=Msa0208310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
