Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213200 | XP_013464364.1 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213200 | sp|Q9XGP7|OMT15_ORYSJ | 44.915 | 236 | 116 | 5 | 73 | 295 | 16 | 250 | 1.73e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213200 | A0A072V8S2 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213200 | Msa0269600 | 0.983853 | 6.830703e-159 | -8.615850e-47 |
| Msa0213200 | Msa0317830 | 0.839879 | 1.216776e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213200 | MtrunA17_Chr2g0312921 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Msa0213200 | MtrunA17_Chr8g0344401 | 39.171 | 217 | 122 | 4 | 89 | 295 | 17 | 233 | 4.45e-47 | 157 |
| Msa0213200 | MtrunA17_Chr4g0044581 | 39.171 | 217 | 122 | 4 | 89 | 295 | 29 | 245 | 4.07e-46 | 155 |
| Msa0213200 | MtrunA17_Chr4g0051041 | 38.914 | 221 | 122 | 5 | 86 | 294 | 8 | 227 | 4.54e-45 | 152 |
| Msa0213200 | MtrunA17_Chr4g0053031 | 37.500 | 224 | 116 | 6 | 89 | 295 | 30 | 246 | 3.37e-43 | 148 |
| Msa0213200 | MtrunA17_Chr4g0053241 | 38.496 | 226 | 111 | 7 | 89 | 295 | 30 | 246 | 3.12e-41 | 143 |
| Msa0213200 | MtrunA17_Chr4g0053331 | 37.445 | 227 | 112 | 9 | 89 | 295 | 25 | 241 | 3.75e-41 | 142 |
| Msa0213200 | MtrunA17_Chr8g0389361 | 40.741 | 216 | 119 | 4 | 89 | 295 | 23 | 238 | 6.43e-41 | 142 |
| Msa0213200 | MtrunA17_Chr6g0487981 | 36.111 | 216 | 129 | 3 | 89 | 295 | 21 | 236 | 2.01e-40 | 140 |
| Msa0213200 | MtrunA17_Chr4g0053021 | 36.000 | 225 | 118 | 7 | 89 | 295 | 28 | 244 | 2.03e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213200 | AT3G62000.1 | 75.099 | 253 | 60 | 1 | 47 | 296 | 26 | 278 | 1.61e-141 | 400 |
| Msa0213200 | AT3G62000.2 | 73.859 | 241 | 60 | 1 | 47 | 284 | 26 | 266 | 2.22e-129 | 372 |
| Msa0213200 | AT3G61990.1 | 75.877 | 228 | 52 | 1 | 69 | 296 | 66 | 290 | 4.28e-124 | 356 |
| Msa0213200 | AT4G26220.1 | 42.009 | 219 | 112 | 4 | 89 | 295 | 15 | 230 | 3.82e-52 | 171 |
| Msa0213200 | AT4G34050.1 | 39.631 | 217 | 121 | 4 | 89 | 295 | 41 | 257 | 1.52e-47 | 160 |
| Msa0213200 | AT4G34050.3 | 39.631 | 217 | 121 | 4 | 89 | 295 | 68 | 284 | 3.15e-47 | 160 |
| Msa0213200 | AT1G67990.1 | 39.171 | 217 | 121 | 4 | 89 | 295 | 16 | 231 | 2.51e-45 | 153 |
| Msa0213200 | AT1G67980.1 | 38.710 | 217 | 121 | 4 | 89 | 295 | 16 | 230 | 3.91e-45 | 153 |
| Msa0213200 | AT1G24735.1 | 35.484 | 217 | 130 | 3 | 89 | 295 | 22 | 238 | 3.19e-41 | 143 |
| Msa0213200 | AT1G24735.3 | 35.789 | 190 | 117 | 1 | 111 | 295 | 4 | 193 | 8.02e-39 | 135 |
| Msa0213200 | AT1G24735.2 | 35.789 | 190 | 117 | 1 | 111 | 295 | 100 | 289 | 4.27e-38 | 136 |
| Msa0213200 | AT1G67980.2 | 32.051 | 156 | 99 | 2 | 145 | 295 | 9 | 162 | 6.97e-21 | 87.8 |
| Msa0213200 | AT4G34050.2 | 39.316 | 117 | 64 | 3 | 186 | 295 | 30 | 146 | 1.13e-20 | 86.7 |
Find 99 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTGCAATTGAACCATTC+AGG | 0.256625 | 2_1:-55831787 | Msa0213200:three_prime_UTR |
| GCAATGCTTGTGCAGATTCT+TGG | 0.287926 | 2_1:-55833730 | Msa0213200:CDS |
| GCAACTAAACGACCTGATTC+TGG | 0.314053 | 2_1:+55833066 | None:intergenic |
| TTGAGATTTACCGGTCTCTT+TGG | 0.314458 | 2_1:-55831700 | Msa0213200:three_prime_UTR |
| CATTCATAATTAGAAATTCT+AGG | 0.329217 | 2_1:+55832809 | None:intergenic |
| TGGTTGTATTTCAGATTCTA+AGG | 0.329998 | 2_1:-55835205 | Msa0213200:intron |
| AAATTGCCTTGCAGAGAAAT+TGG | 0.331385 | 2_1:-55835739 | Msa0213200:five_prime_UTR |
| TCTTAGAACTTGAGATTTAC+CGG | 0.357191 | 2_1:-55831709 | Msa0213200:three_prime_UTR |
| TATTGTATAATGGTAATTAT+AGG | 0.372911 | 2_1:-55835659 | Msa0213200:exon |
| AATAGATTCAGATGTGTAGA+TGG | 0.376969 | 2_1:-55831466 | Msa0213200:three_prime_UTR |
| TTTGATTCTCACAACATTTG+TGG | 0.377153 | 2_1:+55831624 | None:intergenic |
| ATTATGTTCTCGAAAATGTT+CGG | 0.386238 | 2_1:-55835379 | Msa0213200:CDS |
| CGAGAACATAATCATACAAC+CGG | 0.392943 | 2_1:+55835390 | None:intergenic |
| GCATTAGTCCTTCCAGAATC+AGG | 0.399144 | 2_1:-55833078 | Msa0213200:CDS |
| TTCTTCATTATGCAGTTCTC+AGG | 0.409880 | 2_1:+55831660 | None:intergenic |
| TTGGTGGCTTAGGTACCTAT+TGG | 0.412007 | 2_1:-55831871 | Msa0213200:intron |
| TCTTTGAGCTTTACTAGTAC+TGG | 0.412893 | 2_1:+55835514 | None:intergenic |
| TTATGTTCTCGAAAATGTTC+GGG | 0.415226 | 2_1:-55835378 | Msa0213200:CDS |
| ATAATAGGTGTCTCCTGATC+AGG | 0.424494 | 2_1:-55833764 | Msa0213200:intron |
| CTAGAATTTCTAATTATGAA+TGG | 0.426859 | 2_1:-55832808 | Msa0213200:CDS |
| GCTTGCTGGTGTTTCACATA+AGG | 0.430882 | 2_1:-55832995 | Msa0213200:intron |
| AAGAAGTATTATCAGCTTGC+TGG | 0.435455 | 2_1:-55833009 | Msa0213200:CDS |
| GCCAGTAGTTGTGCCTGATC+AGG | 0.436714 | 2_1:+55833751 | None:intergenic |
| TCTATGTATAAAGCTACAAA+AGG | 0.436800 | 2_1:+55835854 | None:intergenic |
| ATTGCTAGTGATGAAAAGTA+TGG | 0.438769 | 2_1:-55835440 | Msa0213200:CDS |
| TCCTGATCAGGCACAACTAC+TGG | 0.443207 | 2_1:-55833752 | Msa0213200:CDS |
| ATTAACTTGGTGTTTCATCA+TGG | 0.444634 | 2_1:-55835620 | Msa0213200:CDS |
| TAATTTGAATTATGCAACTT+GGG | 0.452966 | 2_1:-55835543 | Msa0213200:CDS |
| TTGTAATTGATAATGTCCTT+TGG | 0.454375 | 2_1:-55832160 | Msa0213200:CDS |
| CTCTAAAATTGAAATGATGA+TGG | 0.456173 | 2_1:-55835924 | Msa0213200:five_prime_UTR |
| CTTGCAGAGAAATTGGCAAA+AGG | 0.457524 | 2_1:-55835732 | Msa0213200:five_prime_UTR |
| CCATTGGATGGATAACATAC+AGG | 0.460954 | 2_1:-55831542 | Msa0213200:three_prime_UTR |
| AAGAGAGTTACGTGGAAGAT+AGG | 0.465396 | 2_1:-55835688 | Msa0213200:five_prime_UTR |
| ATGAGAATGTTTCCATTGGA+TGG | 0.468886 | 2_1:-55831554 | Msa0213200:three_prime_UTR |
| TAAGCGTGTAAGCATCAGTA+TGG | 0.471614 | 2_1:-55831985 | Msa0213200:intron |
| ATTGTCATCCCATCTCCAAT+AGG | 0.475142 | 2_1:+55831856 | None:intergenic |
| CTTAGCAACATCAAGAGATC+TGG | 0.475859 | 2_1:+55833029 | None:intergenic |
| TTGCAGAGAAATTGGCAAAA+GGG | 0.478046 | 2_1:-55835731 | Msa0213200:five_prime_UTR |
| CATTGCAATTGAACCATTCA+GGG | 0.480710 | 2_1:-55831786 | Msa0213200:three_prime_UTR |
| CTAATTATGAATGGTGAAGC+TGG | 0.488384 | 2_1:-55832799 | Msa0213200:CDS |
| AGTAAAGCTCAAAGATTGAA+AGG | 0.493916 | 2_1:-55835506 | Msa0213200:CDS |
| TGATGGGAGATACCTGCATC+TGG | 0.495028 | 2_1:+55835147 | None:intergenic |
| CTGTTGCAGGTGAGGATTGG+AGG | 0.496022 | 2_1:-55832188 | Msa0213200:intron |
| GCTTGAACTGAATCTTATAG+AGG | 0.497638 | 2_1:+55835882 | None:intergenic |
| TAGGTCGGTGTATTGTATAA+TGG | 0.502343 | 2_1:-55835669 | Msa0213200:exon |
| ATTCATAATTAGAAATTCTA+GGG | 0.503168 | 2_1:+55832810 | None:intergenic |
| GCTTAGGTACCTATTGGAGA+TGG | 0.503427 | 2_1:-55831865 | Msa0213200:intron |
| TACTAGGTGGATGTAAAACT+TGG | 0.505836 | 2_1:-55832847 | Msa0213200:intron |
| TTAACTTGGTGTTTCATCAT+GGG | 0.511784 | 2_1:-55835619 | Msa0213200:CDS |
| GACAAATAGTAGCATTAACT+TGG | 0.515595 | 2_1:-55835633 | Msa0213200:CDS |
| GATGGATAACATACAGGTGC+AGG | 0.516029 | 2_1:-55831536 | Msa0213200:three_prime_UTR |
| TTAATTTGAATTATGCAACT+TGG | 0.516265 | 2_1:-55835544 | Msa0213200:CDS |
| TATAAAGCTACAAAAGGGTA+AGG | 0.520044 | 2_1:+55835860 | None:intergenic |
| ATAAGTATAACTACCCTGAA+TGG | 0.522769 | 2_1:+55831773 | None:intergenic |
| CAAATGTTGTGAGAATCAAA+TGG | 0.526988 | 2_1:-55831621 | Msa0213200:three_prime_UTR |
| GCAGAACGGTGTATTGAAGT+TGG | 0.528745 | 2_1:-55833706 | Msa0213200:CDS |
| CACATCTGAATCTATTTCCC+AGG | 0.533699 | 2_1:+55831473 | None:intergenic |
| TATAATGAGAATGTTTCCAT+TGG | 0.535762 | 2_1:-55831558 | Msa0213200:three_prime_UTR |
| CTTGAACTGAATCTTATAGA+GGG | 0.541705 | 2_1:+55835883 | None:intergenic |
| TCTTTGGCTGACCTTGCGGA+AGG | 0.543119 | 2_1:-55831684 | Msa0213200:three_prime_UTR |
| GTAAAGCTCAAAGATTGAAA+GGG | 0.544679 | 2_1:-55835505 | Msa0213200:CDS |
| GCAATTTCACAAACACTTGG+TGG | 0.544952 | 2_1:+55835755 | None:intergenic |
| GTGCTGTTGCAGGTGAGGAT+TGG | 0.549400 | 2_1:-55832191 | Msa0213200:intron |
| TATGCATGGAAGCCAGATGC+AGG | 0.552563 | 2_1:-55835159 | Msa0213200:intron |
| AGATCTGGCATCTCTTTCAC+AGG | 0.558087 | 2_1:+55833044 | None:intergenic |
| ATTGATAATGTCCTTTGGCA+TGG | 0.562307 | 2_1:-55832155 | Msa0213200:CDS |
| TGGAAAAGTTGCTGATCCAT+TGG | 0.563254 | 2_1:-55832135 | Msa0213200:intron |
| CTTAGGTACCTATTGGAGAT+GGG | 0.563487 | 2_1:-55831864 | Msa0213200:intron |
| CCTGTATGTTATCCATCCAA+TGG | 0.567400 | 2_1:+55831542 | None:intergenic |
| TGAAAAGTATGGCAATAAGC+AGG | 0.568686 | 2_1:-55835429 | Msa0213200:CDS |
| GCAAGGTCAGCCAAAGAGAC+CGG | 0.570499 | 2_1:+55831690 | None:intergenic |
| AGCAATAACGACCTCACCGA+TGG | 0.573827 | 2_1:+55835457 | None:intergenic |
| AATTTGAATTATGCAACTTG+GGG | 0.573910 | 2_1:-55835542 | Msa0213200:CDS |
| CAATTTCACAAACACTTGGT+GGG | 0.576133 | 2_1:+55835756 | None:intergenic |
| GGTCTCTTTGGCTGACCTTG+CGG | 0.576531 | 2_1:-55831688 | Msa0213200:three_prime_UTR |
| TCTAAAATTGAAATGATGAT+GGG | 0.579002 | 2_1:-55835923 | Msa0213200:five_prime_UTR |
| TGCAGATTCTTGGAGCAGAA+CGG | 0.585514 | 2_1:-55833720 | Msa0213200:CDS |
| TTATGAATGGTGAAGCTGGA+AGG | 0.590746 | 2_1:-55832795 | Msa0213200:intron |
| AAAATTGAAATGATGATGGG+TGG | 0.595679 | 2_1:-55835920 | Msa0213200:five_prime_UTR |
| ATAGATTCAGATGTGTAGAT+GGG | 0.598351 | 2_1:-55831465 | Msa0213200:three_prime_UTR |
| CTATGTATAAAGCTACAAAA+GGG | 0.600901 | 2_1:+55835855 | None:intergenic |
| CTTGTAAGAAACAGTTCCAT+CGG | 0.605174 | 2_1:-55835473 | Msa0213200:CDS |
| AAGGCAATTTCACAAACACT+TGG | 0.606245 | 2_1:+55835752 | None:intergenic |
| CTGAATCTATTTCCCAGGCT+AGG | 0.613420 | 2_1:+55831478 | None:intergenic |
| GAGTTACGTGGAAGATAGGT+CGG | 0.615102 | 2_1:-55835684 | Msa0213200:five_prime_UTR |
| GCGGAGACTGCATCTATGCA+TGG | 0.626495 | 2_1:-55835173 | Msa0213200:CDS |
| CGAAAATGTTCGGGAACCAG+AGG | 0.628168 | 2_1:-55835369 | Msa0213200:intron |
| TTCAAATTAAATCTTGCACA+AGG | 0.634077 | 2_1:+55835557 | None:intergenic |
| GATTCTAAGGCAGTTACGAG+CGG | 0.637191 | 2_1:-55835192 | Msa0213200:CDS |
| AGTTCTCAGGTCCTTCCGCA+AGG | 0.637239 | 2_1:+55831673 | None:intergenic |
| AGTGAAGATACATGTTCATG+AGG | 0.637993 | 2_1:+55835587 | None:intergenic |
| GAGATGGGATGACAATCTGT+CGG | 0.642936 | 2_1:-55831849 | Msa0213200:CDS |
| AGGTTGTTAGTCTTACGCCC+CGG | 0.659105 | 2_1:-55835409 | Msa0213200:CDS |
| CTAAACGACCTGATTCTGGA+AGG | 0.659892 | 2_1:+55833070 | None:intergenic |
| TTGAACTGAATCTTATAGAG+GGG | 0.685534 | 2_1:+55835884 | None:intergenic |
| AGGAAAATAAGAGAGTTACG+TGG | 0.697686 | 2_1:-55835696 | Msa0213200:five_prime_UTR |
| AAGAAACAGTTCCATCGGTG+AGG | 0.701250 | 2_1:-55835468 | Msa0213200:CDS |
| GAGAACATAATCATACAACC+GGG | 0.710659 | 2_1:+55835391 | None:intergenic |
| AGAACATAATCATACAACCG+GGG | 0.758190 | 2_1:+55835392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTATTATTATTTTT+TGG | + | chr2_1:55833271-55833290 | None:intergenic | 0.0% |
| !! | AACAAAAATAAAGATAAAAA+AGG | + | chr2_1:55831588-55831607 | None:intergenic | 10.0% |
| !!! | TATATAGACTATTTTTATAT+TGG | - | chr2_1:55834487-55834506 | Msa0213200:intron | 10.0% |
| !! | TATTGTATAATGGTAATTAT+AGG | - | chr2_1:55831737-55831756 | Msa0213200:three_prime_UTR | 15.0% |
| !! | AAATACAATAAATCAGTAAT+GGG | + | chr2_1:55832071-55832090 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAATTGTGAAATT+TGG | - | chr2_1:55833473-55833492 | Msa0213200:intron | 15.0% |
| !! | TAAATTGTCTTAATCTTAAT+AGG | - | chr2_1:55833837-55833856 | Msa0213200:intron | 15.0% |
| !! | AAATTGTCTTAATCTTAATA+GGG | - | chr2_1:55833838-55833857 | Msa0213200:intron | 15.0% |
| !! | AAATCTTTCTATATTATCAT+AGG | + | chr2_1:55834063-55834082 | None:intergenic | 15.0% |
| !! | ATTCATAATTAGAAATTCTA+GGG | + | chr2_1:55834589-55834608 | None:intergenic | 15.0% |
| !! | GTATTAGTAATTAGAAAAAA+TGG | + | chr2_1:55835447-55835466 | None:intergenic | 15.0% |
| !!! | TCTAAAATTGAAATGATGAT+GGG | - | chr2_1:55831473-55831492 | Msa0213200:three_prime_UTR | 20.0% |
| !!! | TTAATTTGAATTATGCAACT+TGG | - | chr2_1:55831852-55831871 | Msa0213200:CDS | 20.0% |
| !! | TAATTTGAATTATGCAACTT+GGG | - | chr2_1:55831853-55831872 | Msa0213200:CDS | 20.0% |
| !! | CAAATACAATAAATCAGTAA+TGG | + | chr2_1:55832072-55832091 | None:intergenic | 20.0% |
| !! | AATTTGCATAACAAAATGAT+GGG | + | chr2_1:55832268-55832287 | None:intergenic | 20.0% |
| !! | AAATTTGCATAACAAAATGA+TGG | + | chr2_1:55832269-55832288 | None:intergenic | 20.0% |
| !!! | GAAAATTTAACTTTTTGAGT+AGG | + | chr2_1:55832851-55832870 | None:intergenic | 20.0% |
| !!! | TTTGATTTTAGGATTTAAGT+CGG | - | chr2_1:55833428-55833447 | Msa0213200:intron | 20.0% |
| !!! | TTTTAAATTGTGAAATTTGG+CGG | - | chr2_1:55833476-55833495 | Msa0213200:intron | 20.0% |
| !! | TGATACATTGTCTTTATAAT+AGG | - | chr2_1:55833617-55833636 | Msa0213200:intron | 20.0% |
| !!! | TCCTTTATTTTTAACAGTAT+AGG | - | chr2_1:55833728-55833747 | Msa0213200:CDS | 20.0% |
| !!! | ATTATATTGTTAATTTGACC+AGG | - | chr2_1:55834275-55834294 | Msa0213200:intron | 20.0% |
| !!! | TTATATTGTTAATTTGACCA+GGG | - | chr2_1:55834276-55834295 | Msa0213200:intron | 20.0% |
| !!! | AGTTTTAATGTAATGATACT+AGG | - | chr2_1:55834533-55834552 | Msa0213200:intron | 20.0% |
| !! | CATTCATAATTAGAAATTCT+AGG | + | chr2_1:55834590-55834609 | None:intergenic | 20.0% |
| !! | CTAGAATTTCTAATTATGAA+TGG | - | chr2_1:55834588-55834607 | Msa0213200:intron | 20.0% |
| !! | TTTGGATAAACTACTTAATT+AGG | + | chr2_1:55834845-55834864 | None:intergenic | 20.0% |
| !!! | ATTTGATGTTTCTCTTTTTT+AGG | - | chr2_1:55834911-55834930 | Msa0213200:intron | 20.0% |
| !!! | TTTGATGTTTCTCTTTTTTA+GGG | - | chr2_1:55834912-55834931 | Msa0213200:intron | 20.0% |
| !!! | GCATTAGAAATTTTAATCAA+CGG | - | chr2_1:55835377-55835396 | Msa0213200:CDS | 20.0% |
| !!! | AAATTTTAATCAACGGTTAA+TGG | - | chr2_1:55835384-55835403 | Msa0213200:CDS | 20.0% |
| !!! | CTCTAAAATTGAAATGATGA+TGG | - | chr2_1:55831472-55831491 | Msa0213200:three_prime_UTR | 25.0% |
| ! | CTATGTATAAAGCTACAAAA+GGG | + | chr2_1:55831544-55831563 | None:intergenic | 25.0% |
| ! | TCTATGTATAAAGCTACAAA+AGG | + | chr2_1:55831545-55831564 | None:intergenic | 25.0% |
| ! | TTCAAATTAAATCTTGCACA+AGG | + | chr2_1:55831842-55831861 | None:intergenic | 25.0% |
| ! | AATTTGAATTATGCAACTTG+GGG | - | chr2_1:55831854-55831873 | Msa0213200:CDS | 25.0% |
| ! | ATTATGTTCTCGAAAATGTT+CGG | - | chr2_1:55832017-55832036 | Msa0213200:CDS | 25.0% |
| ! | CATAAGTATGTGATATCAAT+TGG | - | chr2_1:55832171-55832190 | Msa0213200:CDS | 25.0% |
| ! | TTTGATTCATCTCAAACATA+AGG | + | chr2_1:55832703-55832722 | None:intergenic | 25.0% |
| !! | AGGTTTGTTCTAATGTTTAT+GGG | + | chr2_1:55832903-55832922 | None:intergenic | 25.0% |
| !! | TAGGTTTGTTCTAATGTTTA+TGG | + | chr2_1:55832904-55832923 | None:intergenic | 25.0% |
| ! | TTCTTTAAACTACCAAATGT+AGG | + | chr2_1:55832923-55832942 | None:intergenic | 25.0% |
| !! | ATTTGGTAGTTTAAAGAACA+AGG | - | chr2_1:55832925-55832944 | Msa0213200:intron | 25.0% |
| !! | TTTGGTAGTTTAAAGAACAA+GGG | - | chr2_1:55832926-55832945 | Msa0213200:intron | 25.0% |
| !!! | GCTAATTACCTTATTAGTTT+TGG | - | chr2_1:55833063-55833082 | Msa0213200:CDS | 25.0% |
| !!! | TTGATTTTAGGATTTAAGTC+GGG | - | chr2_1:55833429-55833448 | Msa0213200:intron | 25.0% |
| !! | TCAACATTTTACTTCATAGA+AGG | + | chr2_1:55833597-55833616 | None:intergenic | 25.0% |
| ! | GCCTATACTGTTAAAAATAA+AGG | + | chr2_1:55833732-55833751 | None:intergenic | 25.0% |
| ! | TATGTAGAACAAGATCTAAT+TGG | + | chr2_1:55833786-55833805 | None:intergenic | 25.0% |
| ! | ATTAGATCTTGTTCTACATA+TGG | - | chr2_1:55833786-55833805 | Msa0213200:intron | 25.0% |
| !! | GTCTCTATAACCTTAATTTT+TGG | - | chr2_1:55833950-55833969 | Msa0213200:intron | 25.0% |
| ! | TGAGTTTCATCCAAAAATTA+AGG | + | chr2_1:55833963-55833982 | None:intergenic | 25.0% |
| ! | GTTTACTCTTTAGATTCAAA+TGG | + | chr2_1:55834039-55834058 | None:intergenic | 25.0% |
| ! | AACAATGATGTGCATATTAT+AGG | - | chr2_1:55834189-55834208 | Msa0213200:intron | 25.0% |
| ! | GATGTCAAGTTTAAAAATCT+TGG | + | chr2_1:55834233-55834252 | None:intergenic | 25.0% |
| ! | TATATTTCAAAGTGAAAGTG+TGG | + | chr2_1:55834471-55834490 | None:intergenic | 25.0% |
| ! | ATTAAAACTTCAGAGAATTC+AGG | + | chr2_1:55834522-55834541 | None:intergenic | 25.0% |
| ! | TTTAATGTAATGATACTAGG+TGG | - | chr2_1:55834536-55834555 | Msa0213200:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr2_1:55834720-55834739 | None:intergenic | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | - | chr2_1:55834846-55834865 | Msa0213200:intron | 25.0% |
| ! | TTAAGTAGTTTATCCAAACA+GGG | - | chr2_1:55834847-55834866 | Msa0213200:intron | 25.0% |
| ! | CATTTATTGATGCTGAAAAA+AGG | - | chr2_1:55835042-55835061 | Msa0213200:intron | 25.0% |
| ! | TATTACAGATTGAACAATGT+TGG | + | chr2_1:55835124-55835143 | None:intergenic | 25.0% |
| !!! | TTGTAATTGATAATGTCCTT+TGG | - | chr2_1:55835236-55835255 | Msa0213200:intron | 25.0% |
| !! | ATATGATATATCGTCTCTTT+TGG | - | chr2_1:55835506-55835525 | Msa0213200:CDS | 25.0% |
| ! | TATAATGAGAATGTTTCCAT+TGG | - | chr2_1:55835838-55835857 | Msa0213200:intron | 25.0% |
| !! | AAAATTGAAATGATGATGGG+TGG | - | chr2_1:55831476-55831495 | Msa0213200:three_prime_UTR | 30.0% |
| TTGAACTGAATCTTATAGAG+GGG | + | chr2_1:55831515-55831534 | None:intergenic | 30.0% | |
| CTTGAACTGAATCTTATAGA+GGG | + | chr2_1:55831516-55831535 | None:intergenic | 30.0% | |
| TATAAAGCTACAAAAGGGTA+AGG | + | chr2_1:55831539-55831558 | None:intergenic | 30.0% | |
| TGTTGTATGTATATATCAGC+TGG | - | chr2_1:55831604-55831623 | Msa0213200:three_prime_UTR | 30.0% | |
| GACAAATAGTAGCATTAACT+TGG | - | chr2_1:55831763-55831782 | Msa0213200:three_prime_UTR | 30.0% | |
| !! | ATTAACTTGGTGTTTCATCA+TGG | - | chr2_1:55831776-55831795 | Msa0213200:three_prime_UTR | 30.0% |
| !! | TTAACTTGGTGTTTCATCAT+GGG | - | chr2_1:55831777-55831796 | Msa0213200:three_prime_UTR | 30.0% |
| AGTAAAGCTCAAAGATTGAA+AGG | - | chr2_1:55831890-55831909 | Msa0213200:intron | 30.0% | |
| GTAAAGCTCAAAGATTGAAA+GGG | - | chr2_1:55831891-55831910 | Msa0213200:intron | 30.0% | |
| ATTGCTAGTGATGAAAAGTA+TGG | - | chr2_1:55831956-55831975 | Msa0213200:intron | 30.0% | |
| TTATGTTCTCGAAAATGTTC+GGG | - | chr2_1:55832018-55832037 | Msa0213200:CDS | 30.0% | |
| TGGTTGTATTTCAGATTCTA+AGG | - | chr2_1:55832191-55832210 | Msa0213200:intron | 30.0% | |
| TGTACAAACGTCAAACAATT+TGG | + | chr2_1:55832314-55832333 | None:intergenic | 30.0% | |
| ! | ATTCAAAACTACTAGTTTCC+TGG | + | chr2_1:55832496-55832515 | None:intergenic | 30.0% |
| !!! | AACTAGTAGTTTTGAATCAG+TGG | - | chr2_1:55832499-55832518 | Msa0213200:intron | 30.0% |
| TCTGCATATTCATAGTTACA+AGG | + | chr2_1:55832549-55832568 | None:intergenic | 30.0% | |
| TTATGAGATAGAAGCTTTCA+AGG | + | chr2_1:55832579-55832598 | None:intergenic | 30.0% | |
| CTGTTGCTCAATTATAAGAT+AGG | + | chr2_1:55832668-55832687 | None:intergenic | 30.0% | |
| TCATCTCAAACATAAGGATA+GGG | + | chr2_1:55832697-55832716 | None:intergenic | 30.0% | |
| TTCATCTCAAACATAAGGAT+AGG | + | chr2_1:55832698-55832717 | None:intergenic | 30.0% | |
| ! | GGTTTGTTCTAATGTTTATG+GGG | + | chr2_1:55832902-55832921 | None:intergenic | 30.0% |
| CATTAGAACAAACCTACATT+TGG | - | chr2_1:55832908-55832927 | Msa0213200:intron | 30.0% | |
| GTAATTAGCAATCAAATACC+AGG | + | chr2_1:55832969-55832988 | None:intergenic | 30.0% | |
| GTACTGCAAAAAATGTATCT+TGG | + | chr2_1:55833025-55833044 | None:intergenic | 30.0% | |
| TAATTAGCAATCAAATACGC+GGG | + | chr2_1:55833051-55833070 | None:intergenic | 30.0% | |
| GTAATTAGCAATCAAATACG+CGG | + | chr2_1:55833052-55833071 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr2_1:55833174-55833193 | Msa0213200:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+TGG | - | chr2_1:55833187-55833206 | Msa0213200:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | chr2_1:55833209-55833228 | Msa0213200:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | - | chr2_1:55833174-55833193 | Msa0213200:intron | 30.0% | |
| !! | GTCGCAAAATCTTTGATTTT+AGG | - | chr2_1:55833417-55833436 | Msa0213200:intron | 30.0% |
| AATATGTATGTGATACCCTT+TGG | - | chr2_1:55833991-55834010 | Msa0213200:intron | 30.0% | |
| ATAACAAATGTGACTCCAAA+GGG | + | chr2_1:55834009-55834028 | None:intergenic | 30.0% | |
| TATAACAAATGTGACTCCAA+AGG | + | chr2_1:55834010-55834029 | None:intergenic | 30.0% | |
| TCTTTGCAGATTATGATGAA+CGG | - | chr2_1:55834110-55834129 | Msa0213200:intron | 30.0% | |
| TCTTTCTTTAGTAACTGATG+AGG | - | chr2_1:55834251-55834270 | Msa0213200:intron | 30.0% | |
| ! | GTTATGCTTTTGATCTCATA+AGG | - | chr2_1:55834428-55834447 | Msa0213200:intron | 30.0% |
| AAGTGTGGAACTACAAATAT+TGG | + | chr2_1:55834456-55834475 | None:intergenic | 30.0% | |
| TCAAATAAGCTAGTTGAAAC+AGG | + | chr2_1:55834654-55834673 | None:intergenic | 30.0% | |
| !! | CTTATTTTCGTAAGCTATCT+AGG | - | chr2_1:55834734-55834753 | Msa0213200:intron | 30.0% |
| AAAGTCATAGCTGCATAAAA+AGG | + | chr2_1:55835021-55835040 | None:intergenic | 30.0% | |
| !! | TTTTGGGAAACATAGTTAGA+AGG | + | chr2_1:55835159-55835178 | None:intergenic | 30.0% |
| ! | GAACTGGTATAACAACTTTT+GGG | + | chr2_1:55835175-55835194 | None:intergenic | 30.0% |
| ! | TGAACTGGTATAACAACTTT+TGG | + | chr2_1:55835176-55835195 | None:intergenic | 30.0% |
| ! | TCGTATTTGTTCGTTATTTC+CGG | - | chr2_1:55835297-55835316 | Msa0213200:intron | 30.0% |
| AATACACTTCCAATACACTT+AGG | - | chr2_1:55835462-55835481 | Msa0213200:CDS | 30.0% | |
| ATACACTTCCAATACACTTA+GGG | - | chr2_1:55835463-55835482 | Msa0213200:CDS | 30.0% | |
| ATAAGTATAACTACCCTGAA+TGG | + | chr2_1:55835626-55835645 | None:intergenic | 30.0% | |
| TCTTAGAACTTGAGATTTAC+CGG | - | chr2_1:55835687-55835706 | Msa0213200:five_prime_UTR | 30.0% | |
| TTTGATTCTCACAACATTTG+TGG | + | chr2_1:55835775-55835794 | None:intergenic | 30.0% | |
| CAAATGTTGTGAGAATCAAA+TGG | - | chr2_1:55835775-55835794 | Msa0213200:intron | 30.0% | |
| AATAGATTCAGATGTGTAGA+TGG | - | chr2_1:55835930-55835949 | Msa0213200:five_prime_UTR | 30.0% | |
| GCTTGAACTGAATCTTATAG+AGG | + | chr2_1:55831517-55831536 | None:intergenic | 35.0% | |
| CAATTTCACAAACACTTGGT+GGG | + | chr2_1:55831643-55831662 | None:intergenic | 35.0% | |
| AAGGCAATTTCACAAACACT+TGG | + | chr2_1:55831647-55831666 | None:intergenic | 35.0% | |
| AAATTGCCTTGCAGAGAAAT+TGG | - | chr2_1:55831657-55831676 | Msa0213200:three_prime_UTR | 35.0% | |
| TTGCAGAGAAATTGGCAAAA+GGG | - | chr2_1:55831665-55831684 | Msa0213200:three_prime_UTR | 35.0% | |
| !! | CAAAAGGGCTTTTGAGAATA+AGG | - | chr2_1:55831680-55831699 | Msa0213200:three_prime_UTR | 35.0% |
| AGGAAAATAAGAGAGTTACG+TGG | - | chr2_1:55831700-55831719 | Msa0213200:three_prime_UTR | 35.0% | |
| TAGGTCGGTGTATTGTATAA+TGG | - | chr2_1:55831727-55831746 | Msa0213200:three_prime_UTR | 35.0% | |
| AGTGAAGATACATGTTCATG+AGG | + | chr2_1:55831812-55831831 | None:intergenic | 35.0% | |
| TCTTTGAGCTTTACTAGTAC+TGG | + | chr2_1:55831885-55831904 | None:intergenic | 35.0% | |
| CTTGTAAGAAACAGTTCCAT+CGG | - | chr2_1:55831923-55831942 | Msa0213200:intron | 35.0% | |
| ! | TGAAAAGTATGGCAATAAGC+AGG | - | chr2_1:55831967-55831986 | Msa0213200:intron | 35.0% |
| AGAACATAATCATACAACCG+GGG | + | chr2_1:55832007-55832026 | None:intergenic | 35.0% | |
| GAGAACATAATCATACAACC+GGG | + | chr2_1:55832008-55832027 | None:intergenic | 35.0% | |
| CGAGAACATAATCATACAAC+CGG | + | chr2_1:55832009-55832028 | None:intergenic | 35.0% | |
| TTTGCAAGATTCTGATTCCA+TGG | - | chr2_1:55832115-55832134 | Msa0213200:intron | 35.0% | |
| CTTATGCTCGAAAAACACAA+GGG | + | chr2_1:55832157-55832176 | None:intergenic | 35.0% | |
| ACTTATGCTCGAAAAACACA+AGG | + | chr2_1:55832158-55832177 | None:intergenic | 35.0% | |
| TATTCACACAGTTCACTCAT+TGG | - | chr2_1:55832288-55832307 | Msa0213200:intron | 35.0% | |
| CATGAAAATCTATACTGACC+AGG | - | chr2_1:55832475-55832494 | Msa0213200:intron | 35.0% | |
| !!! | TAGTTTTGAATCAGTGGAGT+TGG | - | chr2_1:55832505-55832524 | Msa0213200:intron | 35.0% |
| !!! | GGAGTTGGTTTTGAACATAT+TGG | - | chr2_1:55832520-55832539 | Msa0213200:intron | 35.0% |
| GGATATGATTGGATAAGAGT+AGG | - | chr2_1:55832614-55832633 | Msa0213200:intron | 35.0% | |
| TGATTGGATAAGAGTAGGAT+AGG | - | chr2_1:55832619-55832638 | Msa0213200:intron | 35.0% | |
| GATTGGATAAGAGTAGGATA+GGG | - | chr2_1:55832620-55832639 | Msa0213200:intron | 35.0% | |
| GACAGACACCAAAACTAATA+AGG | + | chr2_1:55833074-55833093 | None:intergenic | 35.0% | |
| TCAATATCTTGTCCATGCTA+TGG | - | chr2_1:55833094-55833113 | Msa0213200:CDS | 35.0% | |
| CATGCTATGGTTGTCAAAAT+CGG | - | chr2_1:55833107-55833126 | Msa0213200:intron | 35.0% | |
| ATGCTATGGTTGTCAAAATC+GGG | - | chr2_1:55833108-55833127 | Msa0213200:intron | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | - | chr2_1:55833144-55833163 | Msa0213200:intron | 35.0% | |
| CTGTAAACTCGCAATCAAAA+TGG | - | chr2_1:55833235-55833254 | Msa0213200:intron | 35.0% | |
| AAACTCGCAATCAAAATGGA+TGG | - | chr2_1:55833239-55833258 | Msa0213200:intron | 35.0% | |
| !! | TCGATGGATTTTGCTTAGTT+TGG | - | chr2_1:55833356-55833375 | Msa0213200:intron | 35.0% |
| !! | CGATGGATTTTGCTTAGTTT+GGG | - | chr2_1:55833357-55833376 | Msa0213200:intron | 35.0% |
| ! | CTTAGTTTGGGATTCTACTA+TGG | - | chr2_1:55833369-55833388 | Msa0213200:intron | 35.0% |
| CTATGGATTTAAGTCGTTGA+AGG | - | chr2_1:55833386-55833405 | Msa0213200:intron | 35.0% | |
| TTACTTCATAGAAGGCAAGT+GGG | + | chr2_1:55833589-55833608 | None:intergenic | 35.0% | |
| TTTACTTCATAGAAGGCAAG+TGG | + | chr2_1:55833590-55833609 | None:intergenic | 35.0% | |
| ATAGTTATTCAATGCCGTGT+GGG | + | chr2_1:55833904-55833923 | None:intergenic | 35.0% | |
| ! | TCTGAAGAGTACACAAATGA+AGG | + | chr2_1:55833930-55833949 | None:intergenic | 35.0% |
| !! | AAGAAGTATTATCAGCTTGC+TGG | - | chr2_1:55834387-55834406 | Msa0213200:intron | 35.0% |
| TACTAGGTGGATGTAAAACT+TGG | - | chr2_1:55834549-55834568 | Msa0213200:intron | 35.0% | |
| CTAATTATGAATGGTGAAGC+TGG | - | chr2_1:55834597-55834616 | Msa0213200:intron | 35.0% | |
| !! | ATTGATAATGTCCTTTGGCA+TGG | - | chr2_1:55835241-55835260 | Msa0213200:intron | 35.0% |
| CTGATCCATTGGTGAATAAA+TGG | - | chr2_1:55835272-55835291 | Msa0213200:intron | 35.0% | |
| AGAAGTCAAGGTCATTTAAC+CGG | + | chr2_1:55835319-55835338 | None:intergenic | 35.0% | |
| ACATGGTACATTAGAAGTCA+AGG | + | chr2_1:55835331-55835350 | None:intergenic | 35.0% | |
| ! | TGATATATCGTCTCTTTTGG+TGG | - | chr2_1:55835509-55835528 | Msa0213200:CDS | 35.0% |
| TCATTGCAATTGAACCATTC+AGG | - | chr2_1:55835609-55835628 | Msa0213200:CDS | 35.0% | |
| CATTGCAATTGAACCATTCA+GGG | - | chr2_1:55835610-55835629 | Msa0213200:CDS | 35.0% | |
| TTCTTCATTATGCAGTTCTC+AGG | + | chr2_1:55835739-55835758 | None:intergenic | 35.0% | |
| ATGAGAATGTTTCCATTGGA+TGG | - | chr2_1:55835842-55835861 | Msa0213200:intron | 35.0% | |
| GCAATTTCACAAACACTTGG+TGG | + | chr2_1:55831644-55831663 | None:intergenic | 40.0% | |
| ! | CTTTTGCCAATTTCTCTGCA+AGG | + | chr2_1:55831666-55831685 | None:intergenic | 40.0% |
| CTTGCAGAGAAATTGGCAAA+AGG | - | chr2_1:55831664-55831683 | Msa0213200:three_prime_UTR | 40.0% | |
| AAGAGAGTTACGTGGAAGAT+AGG | - | chr2_1:55831708-55831727 | Msa0213200:three_prime_UTR | 40.0% | |
| GCAGTCATATATTCAAGCCA+TGG | + | chr2_1:55832135-55832154 | None:intergenic | 40.0% | |
| TATGTCTTCGCTATGCAAGT+TGG | - | chr2_1:55832335-55832354 | Msa0213200:CDS | 40.0% | |
| ATGTCTTCGCTATGCAAGTT+GGG | - | chr2_1:55832336-55832355 | Msa0213200:CDS | 40.0% | |
| ! | TTGGGTTTCTACTGCACTTT+TGG | - | chr2_1:55832354-55832373 | Msa0213200:CDS | 40.0% |
| CTTCTATCTCATAAAGTCCC+CGG | - | chr2_1:55832585-55832604 | Msa0213200:intron | 40.0% | |
| TCCAATCATATCCACCAAAC+CGG | + | chr2_1:55832607-55832626 | None:intergenic | 40.0% | |
| GTTTAAAGAACAAGGGCTTC+AGG | - | chr2_1:55832933-55832952 | Msa0213200:intron | 40.0% | |
| !! | CGATTTTGACAACCATAGCA+TGG | + | chr2_1:55833109-55833128 | None:intergenic | 40.0% |
| CAAAATCGGGACTTTACTTC+AGG | - | chr2_1:55833121-55833140 | Msa0213200:intron | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | - | chr2_1:55833130-55833149 | Msa0213200:intron | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | - | chr2_1:55833145-55833164 | Msa0213200:intron | 40.0% | |
| ATAATAGGTGTCTCCTGATC+AGG | - | chr2_1:55833632-55833651 | Msa0213200:intron | 40.0% | |
| AGACATTCATGTAACCCACA+CGG | - | chr2_1:55833887-55833906 | Msa0213200:intron | 40.0% | |
| CATAGTTATTCAATGCCGTG+TGG | + | chr2_1:55833905-55833924 | None:intergenic | 40.0% | |
| CTTAGCAACATCAAGAGATC+TGG | + | chr2_1:55834370-55834389 | None:intergenic | 40.0% | |
| TTATGAATGGTGAAGCTGGA+AGG | - | chr2_1:55834601-55834620 | Msa0213200:intron | 40.0% | |
| TAAGCTAGTTGAAACAGGCA+CGG | + | chr2_1:55834649-55834668 | None:intergenic | 40.0% | |
| TTGTCCTCATTAGACTGTAG+TGG | - | chr2_1:55834872-55834891 | Msa0213200:intron | 40.0% | |
| CTCATTAGACTGTAGTGGTT+GGG | - | chr2_1:55834877-55834896 | Msa0213200:intron | 40.0% | |
| !!! | TTTTGAGATGCTACTGCAAC+TGG | - | chr2_1:55835079-55835098 | Msa0213200:intron | 40.0% |
| TGGAAAAGTTGCTGATCCAT+TGG | - | chr2_1:55835261-55835280 | Msa0213200:intron | 40.0% | |
| CGAAGCCATTTATTCACCAA+TGG | + | chr2_1:55835280-55835299 | None:intergenic | 40.0% | |
| ACTTCTAATGTACCATGTGC+AGG | - | chr2_1:55835333-55835352 | Msa0213200:intron | 40.0% | |
| TAAGCGTGTAAGCATCAGTA+TGG | - | chr2_1:55835411-55835430 | Msa0213200:CDS | 40.0% | |
| GAATCTCTCCCTAAGTGTAT+TGG | + | chr2_1:55835474-55835493 | None:intergenic | 40.0% | |
| CTTAGGTACCTATTGGAGAT+GGG | - | chr2_1:55835532-55835551 | Msa0213200:CDS | 40.0% | |
| ATTGTCATCCCATCTCCAAT+AGG | + | chr2_1:55835543-55835562 | None:intergenic | 40.0% | |
| TTGAGATTTACCGGTCTCTT+TGG | - | chr2_1:55835696-55835715 | Msa0213200:five_prime_UTR | 40.0% | |
| CCTGTATGTTATCCATCCAA+TGG | + | chr2_1:55835857-55835876 | None:intergenic | 40.0% | |
| CCATTGGATGGATAACATAC+AGG | - | chr2_1:55835854-55835873 | Msa0213200:five_prime_UTR | 40.0% | |
| !! | TTTTTCTAAGAGCCTAGCCT+GGG | - | chr2_1:55835906-55835925 | Msa0213200:five_prime_UTR | 40.0% |
| CACATCTGAATCTATTTCCC+AGG | + | chr2_1:55835926-55835945 | None:intergenic | 40.0% | |
| GAGTTACGTGGAAGATAGGT+CGG | - | chr2_1:55831712-55831731 | Msa0213200:three_prime_UTR | 45.0% | |
| AAGAAACAGTTCCATCGGTG+AGG | - | chr2_1:55831928-55831947 | Msa0213200:intron | 45.0% | |
| !! | GATTCTAAGGCAGTTACGAG+CGG | - | chr2_1:55832204-55832223 | Msa0213200:intron | 45.0% |
| ATCTCATAAAGTCCCCGGTT+TGG | - | chr2_1:55832590-55832609 | Msa0213200:intron | 45.0% | |
| CAATCATATCCACCAAACCG+GGG | + | chr2_1:55832605-55832624 | None:intergenic | 45.0% | |
| CCAATCATATCCACCAAACC+GGG | + | chr2_1:55832606-55832625 | None:intergenic | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | - | chr2_1:55833129-55833148 | Msa0213200:intron | 45.0% | |
| GCAATGCTTGTGCAGATTCT+TGG | - | chr2_1:55833666-55833685 | Msa0213200:intron | 45.0% | |
| TGCAGATTCTTGGAGCAGAA+CGG | - | chr2_1:55833676-55833695 | Msa0213200:intron | 45.0% | |
| GCAGAACGGTGTATTGAAGT+TGG | - | chr2_1:55833690-55833709 | Msa0213200:intron | 45.0% | |
| AATGCACCACATCAGTTGTG+CGG | - | chr2_1:55834148-55834167 | Msa0213200:intron | 45.0% | |
| ATAGATCCGCACAACTGATG+TGG | + | chr2_1:55834157-55834176 | None:intergenic | 45.0% | |
| GCATTAGTCCTTCCAGAATC+AGG | - | chr2_1:55834318-55834337 | Msa0213200:intron | 45.0% | |
| CTAAACGACCTGATTCTGGA+AGG | + | chr2_1:55834329-55834348 | None:intergenic | 45.0% | |
| GCAACTAAACGACCTGATTC+TGG | + | chr2_1:55834333-55834352 | None:intergenic | 45.0% | |
| AGATCTGGCATCTCTTTCAC+AGG | + | chr2_1:55834355-55834374 | None:intergenic | 45.0% | |
| ! | GCTTGCTGGTGTTTCACATA+AGG | - | chr2_1:55834401-55834420 | Msa0213200:intron | 45.0% |
| CCAACCACTACAGTCTAATG+AGG | + | chr2_1:55834879-55834898 | None:intergenic | 45.0% | |
| CCTCATTAGACTGTAGTGGT+TGG | - | chr2_1:55834876-55834895 | Msa0213200:intron | 45.0% | |
| CAGCACTTCATTCAGTGAAC+TGG | + | chr2_1:55835191-55835210 | None:intergenic | 45.0% | |
| !! | ACTGAATGAAGTGCTGTTGC+AGG | - | chr2_1:55835195-55835214 | Msa0213200:intron | 45.0% |
| ! | CAGCAACTTTTCCATGCCAA+AGG | + | chr2_1:55835255-55835274 | None:intergenic | 45.0% |
| !! | TAGTGTCACTTACCTGCACA+TGG | + | chr2_1:55835348-55835367 | None:intergenic | 45.0% |
| ACACTTAGGGAGAGATTCTC+AGG | - | chr2_1:55835476-55835495 | Msa0213200:CDS | 45.0% | |
| !! | ATCGTCTCTTTTGGTGGCTT+AGG | - | chr2_1:55835515-55835534 | Msa0213200:CDS | 45.0% |
| ! | TTGGTGGCTTAGGTACCTAT+TGG | - | chr2_1:55835525-55835544 | Msa0213200:CDS | 45.0% |
| GCTTAGGTACCTATTGGAGA+TGG | - | chr2_1:55835531-55835550 | Msa0213200:CDS | 45.0% | |
| GAGATGGGATGACAATCTGT+CGG | - | chr2_1:55835547-55835566 | Msa0213200:CDS | 45.0% | |
| GATGGATAACATACAGGTGC+AGG | - | chr2_1:55835860-55835879 | Msa0213200:five_prime_UTR | 45.0% | |
| !! | GTTTTTCTAAGAGCCTAGCC+TGG | - | chr2_1:55835905-55835924 | Msa0213200:five_prime_UTR | 45.0% |
| CTGAATCTATTTCCCAGGCT+AGG | + | chr2_1:55835921-55835940 | None:intergenic | 45.0% | |
| !! | AATAATAAATATGTTATAAA+TGG | - | chr2_1:55833280-55833299 | Msa0213200:intron | 5.0% |
| ! | CACAAACACTTGGTGGGCAA+TGG | + | chr2_1:55831637-55831656 | None:intergenic | 50.0% |
| AGCAATAACGACCTCACCGA+TGG | + | chr2_1:55831942-55831961 | None:intergenic | 50.0% | |
| !! | AGGTTGTTAGTCTTACGCCC+CGG | - | chr2_1:55831987-55832006 | Msa0213200:CDS | 50.0% |
| CGAAAATGTTCGGGAACCAG+AGG | - | chr2_1:55832027-55832046 | Msa0213200:CDS | 50.0% | |
| TCTTCGTCAATCCTCACCTC+TGG | + | chr2_1:55832046-55832065 | None:intergenic | 50.0% | |
| TATGCATGGAAGCCAGATGC+AGG | - | chr2_1:55832237-55832256 | Msa0213200:intron | 50.0% | |
| TGATGGGAGATACCTGCATC+TGG | + | chr2_1:55832252-55832271 | None:intergenic | 50.0% | |
| !! | TCATAAAGTCCCCGGTTTGG+TGG | - | chr2_1:55832593-55832612 | Msa0213200:intron | 50.0% |
| !! | CCCGGTTTGGTGGATATGAT+TGG | - | chr2_1:55832603-55832622 | Msa0213200:intron | 50.0% |
| TCCTGATCAGGCACAACTAC+TGG | - | chr2_1:55833644-55833663 | Msa0213200:intron | 50.0% | |
| AATGAGGACAACGCCCTGTT+TGG | + | chr2_1:55834863-55834882 | None:intergenic | 50.0% | |
| !! | ATGAAGTGCTGTTGCAGGTG+AGG | - | chr2_1:55835200-55835219 | Msa0213200:intron | 50.0% |
| ! | CACTTGGTGGGCAATGGACT+TGG | + | chr2_1:55831631-55831650 | None:intergenic | 55.0% |
| ATGTTCGGGAACCAGAGGTG+AGG | - | chr2_1:55832032-55832051 | Msa0213200:CDS | 55.0% | |
| GCGGAGACTGCATCTATGCA+TGG | - | chr2_1:55832223-55832242 | Msa0213200:intron | 55.0% | |
| GAACAAGGGCTTCAGGTGTC+TGG | - | chr2_1:55832940-55832959 | Msa0213200:intron | 55.0% | |
| GCTTCAGGTGTCTGGTATCC+TGG | - | chr2_1:55832948-55832967 | Msa0213200:intron | 55.0% | |
| GCCAGTAGTTGTGCCTGATC+AGG | + | chr2_1:55833648-55833667 | None:intergenic | 55.0% | |
| TCGCTAGTGATGAGTAGCCC+TGG | + | chr2_1:55834296-55834315 | None:intergenic | 55.0% | |
| ! | GTGCTGTTGCAGGTGAGGAT+TGG | - | chr2_1:55835205-55835224 | Msa0213200:intron | 55.0% |
| CTGTTGCAGGTGAGGATTGG+AGG | - | chr2_1:55835208-55835227 | Msa0213200:intron | 55.0% | |
| GCAAGGTCAGCCAAAGAGAC+CGG | + | chr2_1:55835709-55835728 | None:intergenic | 55.0% | |
| GGTCTCTTTGGCTGACCTTG+CGG | - | chr2_1:55835708-55835727 | Msa0213200:five_prime_UTR | 55.0% | |
| TCTTTGGCTGACCTTGCGGA+AGG | - | chr2_1:55835712-55835731 | Msa0213200:five_prime_UTR | 55.0% | |
| AGTTCTCAGGTCCTTCCGCA+AGG | + | chr2_1:55835726-55835745 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 55831465 | 55835953 | 55831465 | ID=Msa0213200;Name=Msa0213200 |
| chr2_1 | mRNA | 55831465 | 55835953 | 55831465 | ID=Msa0213200-mRNA-1;Parent=Msa0213200;Name=Msa0213200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=219|1|1|1|0.88|0.8|10|375|296 |
| chr2_1 | exon | 55831465 | 55831881 | 55831465 | ID=Msa0213200-mRNA-1:exon:15513;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55831986 | 55832063 | 55831986 | ID=Msa0213200-mRNA-1:exon:15512;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55832136 | 55832201 | 55832136 | ID=Msa0213200-mRNA-1:exon:15511;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55832318 | 55832387 | 55832318 | ID=Msa0213200-mRNA-1:exon:15510;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55832796 | 55832863 | 55832796 | ID=Msa0213200-mRNA-1:exon:15509;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55832996 | 55833121 | 55832996 | ID=Msa0213200-mRNA-1:exon:15508;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55833696 | 55833779 | 55833696 | ID=Msa0213200-mRNA-1:exon:15507;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55835160 | 55835213 | 55835160 | ID=Msa0213200-mRNA-1:exon:15506;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55835370 | 55835780 | 55835370 | ID=Msa0213200-mRNA-1:exon:15505;Parent=Msa0213200-mRNA-1 |
| chr2_1 | exon | 55835843 | 55835953 | 55835843 | ID=Msa0213200-mRNA-1:exon:15504;Parent=Msa0213200-mRNA-1 |
| chr2_1 | five_prime_UTR | 55835843 | 55835953 | 55835843 | ID=Msa0213200-mRNA-1:five_prime_utr;Parent=Msa0213200-mRNA-1 |
| chr2_1 | five_prime_UTR | 55835673 | 55835780 | 55835673 | ID=Msa0213200-mRNA-1:five_prime_utr;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55835370 | 55835672 | 55835370 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55835160 | 55835213 | 55835160 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55833696 | 55833779 | 55833696 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55832996 | 55833121 | 55832996 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55832796 | 55832863 | 55832796 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55832318 | 55832387 | 55832318 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55832136 | 55832201 | 55832136 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55831986 | 55832063 | 55831986 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | CDS | 55831840 | 55831881 | 55831840 | ID=Msa0213200-mRNA-1:cds;Parent=Msa0213200-mRNA-1 |
| chr2_1 | three_prime_UTR | 55831465 | 55831839 | 55831465 | ID=Msa0213200-mRNA-1:three_prime_utr;Parent=Msa0213200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
