Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269600 | XP_013464364.1 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269600 | sp|Q9XGP7|OMT15_ORYSJ | 44.915 | 236 | 116 | 5 | 73 | 295 | 16 | 250 | 1.73e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269600 | A0A072V8S2 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213200 | Msa0269600 | 0.983853 | 6.830703e-159 | -8.615850e-47 |
| Msa0269600 | Msa0317830 | 0.851397 | 9.112833e-61 | -8.615850e-47 |
| Msa0269600 | Msa1146150 | 0.805691 | 1.181094e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269600 | MtrunA17_Chr2g0312921 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Msa0269600 | MtrunA17_Chr8g0344401 | 39.171 | 217 | 122 | 4 | 89 | 295 | 17 | 233 | 4.45e-47 | 157 |
| Msa0269600 | MtrunA17_Chr4g0044581 | 39.171 | 217 | 122 | 4 | 89 | 295 | 29 | 245 | 4.07e-46 | 155 |
| Msa0269600 | MtrunA17_Chr4g0051041 | 38.914 | 221 | 122 | 5 | 86 | 294 | 8 | 227 | 4.54e-45 | 152 |
| Msa0269600 | MtrunA17_Chr4g0053031 | 37.500 | 224 | 116 | 6 | 89 | 295 | 30 | 246 | 3.37e-43 | 148 |
| Msa0269600 | MtrunA17_Chr4g0053241 | 38.496 | 226 | 111 | 7 | 89 | 295 | 30 | 246 | 3.12e-41 | 143 |
| Msa0269600 | MtrunA17_Chr4g0053331 | 37.445 | 227 | 112 | 9 | 89 | 295 | 25 | 241 | 3.75e-41 | 142 |
| Msa0269600 | MtrunA17_Chr8g0389361 | 40.741 | 216 | 119 | 4 | 89 | 295 | 23 | 238 | 6.43e-41 | 142 |
| Msa0269600 | MtrunA17_Chr6g0487981 | 36.111 | 216 | 129 | 3 | 89 | 295 | 21 | 236 | 2.01e-40 | 140 |
| Msa0269600 | MtrunA17_Chr4g0053021 | 36.000 | 225 | 118 | 7 | 89 | 295 | 28 | 244 | 2.03e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269600 | AT3G62000.1 | 75.099 | 253 | 60 | 1 | 47 | 296 | 26 | 278 | 1.61e-141 | 400 |
| Msa0269600 | AT3G62000.2 | 73.859 | 241 | 60 | 1 | 47 | 284 | 26 | 266 | 2.22e-129 | 372 |
| Msa0269600 | AT3G61990.1 | 75.877 | 228 | 52 | 1 | 69 | 296 | 66 | 290 | 4.28e-124 | 356 |
| Msa0269600 | AT4G26220.1 | 42.009 | 219 | 112 | 4 | 89 | 295 | 15 | 230 | 3.82e-52 | 171 |
| Msa0269600 | AT4G34050.1 | 39.631 | 217 | 121 | 4 | 89 | 295 | 41 | 257 | 1.52e-47 | 160 |
| Msa0269600 | AT4G34050.3 | 39.631 | 217 | 121 | 4 | 89 | 295 | 68 | 284 | 3.15e-47 | 160 |
| Msa0269600 | AT1G67990.1 | 39.171 | 217 | 121 | 4 | 89 | 295 | 16 | 231 | 2.51e-45 | 153 |
| Msa0269600 | AT1G67980.1 | 38.710 | 217 | 121 | 4 | 89 | 295 | 16 | 230 | 3.91e-45 | 153 |
| Msa0269600 | AT1G24735.1 | 35.484 | 217 | 130 | 3 | 89 | 295 | 22 | 238 | 3.19e-41 | 143 |
| Msa0269600 | AT1G24735.3 | 35.789 | 190 | 117 | 1 | 111 | 295 | 4 | 193 | 8.02e-39 | 135 |
| Msa0269600 | AT1G24735.2 | 35.789 | 190 | 117 | 1 | 111 | 295 | 100 | 289 | 4.27e-38 | 136 |
| Msa0269600 | AT1G67980.2 | 32.051 | 156 | 99 | 2 | 145 | 295 | 9 | 162 | 6.97e-21 | 87.8 |
| Msa0269600 | AT4G34050.2 | 39.316 | 117 | 64 | 3 | 186 | 295 | 30 | 146 | 1.13e-20 | 86.7 |
Find 100 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTGCAATTGAACCATTC+AGG | 0.256625 | 2_3:-522157 | Msa0269600:three_prime_UTR |
| CATTGGATGGATAACATTAC+AGG | 0.280753 | 2_3:-521911 | Msa0269600:three_prime_UTR |
| GCAATGCTTGTGCAGATTCT+TGG | 0.287926 | 2_3:-524102 | Msa0269600:CDS |
| GCAACTAAACGACCTGATTC+TGG | 0.314053 | 2_3:+523438 | None:intergenic |
| TTGAGATTTACCGGTCTCTT+TGG | 0.314458 | 2_3:-522070 | Msa0269600:three_prime_UTR |
| CATTCATAATTAGAAATTCT+AGG | 0.329217 | 2_3:+523179 | None:intergenic |
| TGGTTGTATTTCAGATTCTA+AGG | 0.329998 | 2_3:-525582 | Msa0269600:intron |
| AAATTGCCTTGCAGAGAAAT+TGG | 0.331385 | 2_3:-526116 | Msa0269600:five_prime_UTR |
| TCTTAGAACTTGAGATTTAC+CGG | 0.357191 | 2_3:-522079 | Msa0269600:three_prime_UTR |
| TATTGTATAATGGTAATTAT+AGG | 0.372911 | 2_3:-526036 | Msa0269600:exon |
| AATAGATTCAGATGTGTAGA+TGG | 0.376969 | 2_3:-521835 | Msa0269600:three_prime_UTR |
| TTTGATTCTCACAACATTTG+TGG | 0.377153 | 2_3:+521994 | None:intergenic |
| ATTATGTTCTCGAAAATGTT+CGG | 0.386238 | 2_3:-525756 | Msa0269600:CDS |
| CGAGAACATAATCATACAAC+CGG | 0.392943 | 2_3:+525767 | None:intergenic |
| GCATTAGTCCTTCCAGAATC+AGG | 0.399144 | 2_3:-523450 | Msa0269600:CDS |
| TTCTTCATTATGCAGTTCTC+AGG | 0.409880 | 2_3:+522030 | None:intergenic |
| TTGGTGGCTTAGGTACCTAT+TGG | 0.412007 | 2_3:-522241 | Msa0269600:intron |
| TCTTTGAGCTTTACTAGTAC+TGG | 0.412893 | 2_3:+525891 | None:intergenic |
| TTATGTTCTCGAAAATGTTC+GGG | 0.415226 | 2_3:-525755 | Msa0269600:CDS |
| ATAATAGGTGTCTCCTGATC+AGG | 0.424494 | 2_3:-524136 | Msa0269600:intron |
| CTAGAATTTCTAATTATGAA+TGG | 0.426859 | 2_3:-523178 | Msa0269600:CDS |
| GCTTGCTGGTGTTTCACATA+AGG | 0.430882 | 2_3:-523367 | Msa0269600:intron |
| AAGAAGTATTATCAGCTTGC+TGG | 0.435455 | 2_3:-523381 | Msa0269600:CDS |
| GCCAGTAGTTGTGCCTGATC+AGG | 0.436714 | 2_3:+524123 | None:intergenic |
| TCTATGTATAAAGCTACAAA+AGG | 0.436800 | 2_3:+526231 | None:intergenic |
| ATTGCTAGTGATGAAAAGTA+TGG | 0.438769 | 2_3:-525817 | Msa0269600:CDS |
| TCCTGATCAGGCACAACTAC+TGG | 0.443207 | 2_3:-524124 | Msa0269600:CDS |
| ATTAACTTGGTGTTTCATCA+TGG | 0.444634 | 2_3:-525997 | Msa0269600:CDS |
| TAATTTGAATTATGCAACTT+GGG | 0.452966 | 2_3:-525920 | Msa0269600:CDS |
| TTGTAATTGATAATGTCCTT+TGG | 0.454375 | 2_3:-522530 | Msa0269600:CDS |
| CTCTAAAATTGAAATGATGA+TGG | 0.456173 | 2_3:-526302 | Msa0269600:five_prime_UTR |
| CTTGCAGAGAAATTGGCAAA+AGG | 0.457524 | 2_3:-526109 | Msa0269600:five_prime_UTR |
| AAGAGAGTTACGTGGAAGAT+AGG | 0.465396 | 2_3:-526065 | Msa0269600:five_prime_UTR |
| ATGAGAATGTTTCCATTGGA+TGG | 0.468886 | 2_3:-521924 | Msa0269600:three_prime_UTR |
| TAAGCGTGTAAGCATCAGTA+TGG | 0.471614 | 2_3:-522355 | Msa0269600:intron |
| ATTGTCATCCCATCTCCAAT+AGG | 0.475142 | 2_3:+522226 | None:intergenic |
| CTTAGCAACATCAAGAGATC+TGG | 0.475859 | 2_3:+523401 | None:intergenic |
| TTGCAGAGAAATTGGCAAAA+GGG | 0.478046 | 2_3:-526108 | Msa0269600:five_prime_UTR |
| CATTGCAATTGAACCATTCA+GGG | 0.480710 | 2_3:-522156 | Msa0269600:three_prime_UTR |
| CTAATTATGAATGGTGAAGC+TGG | 0.488384 | 2_3:-523169 | Msa0269600:CDS |
| AGTAAAGCTCAAAGATTGAA+AGG | 0.493916 | 2_3:-525883 | Msa0269600:CDS |
| TGATGGGAGATACCTGCATC+TGG | 0.495028 | 2_3:+525524 | None:intergenic |
| CTGTTGCAGGTGAGGATTGG+AGG | 0.496022 | 2_3:-522558 | Msa0269600:intron |
| GCTTGAACTGAATCTTATAG+AGG | 0.497228 | 2_3:+526259 | None:intergenic |
| TAGGTCGGTGTATTGTATAA+TGG | 0.502343 | 2_3:-526046 | Msa0269600:exon |
| ATTCATAATTAGAAATTCTA+GGG | 0.503168 | 2_3:+523180 | None:intergenic |
| GCTTAGGTACCTATTGGAGA+TGG | 0.503427 | 2_3:-522235 | Msa0269600:intron |
| TACTAGGTGGATGTAAAACT+TGG | 0.505836 | 2_3:-523217 | Msa0269600:intron |
| TTAACTTGGTGTTTCATCAT+GGG | 0.511784 | 2_3:-525996 | Msa0269600:CDS |
| ATGGATAACATTACAGGTGC+AGG | 0.512931 | 2_3:-521905 | Msa0269600:three_prime_UTR |
| GACAAATAGTAGCATTAACT+TGG | 0.515595 | 2_3:-526010 | Msa0269600:CDS |
| TTAATTTGAATTATGCAACT+TGG | 0.516265 | 2_3:-525921 | Msa0269600:CDS |
| TATAAAGCTACAAAAGGGTA+AGG | 0.520044 | 2_3:+526237 | None:intergenic |
| ATAAGTATAACTACCCTGAA+TGG | 0.522769 | 2_3:+522143 | None:intergenic |
| CAAATGTTGTGAGAATCAAA+TGG | 0.526988 | 2_3:-521991 | Msa0269600:three_prime_UTR |
| GCAGAACGGTGTATTGAAGT+TGG | 0.528745 | 2_3:-524078 | Msa0269600:CDS |
| CACATCTGAATCTATTTCCC+AGG | 0.533699 | 2_3:+521842 | None:intergenic |
| TATAATGAGAATGTTTCCAT+TGG | 0.535762 | 2_3:-521928 | Msa0269600:three_prime_UTR |
| TCTTTGGCTGACCTTGCGGA+AGG | 0.543119 | 2_3:-522054 | Msa0269600:three_prime_UTR |
| GTAAAGCTCAAAGATTGAAA+GGG | 0.544679 | 2_3:-525882 | Msa0269600:CDS |
| GCAATTTCACAAACACTTGG+TGG | 0.544952 | 2_3:+526132 | None:intergenic |
| GTGCTGTTGCAGGTGAGGAT+TGG | 0.549400 | 2_3:-522561 | Msa0269600:intron |
| CTGTAATGTTATCCATCCAA+TGG | 0.549558 | 2_3:+521912 | None:intergenic |
| TATGCATGGAAGCCAGATGC+AGG | 0.552563 | 2_3:-525536 | Msa0269600:intron |
| CTTGAACTGAATCTTATAGA+GGG | 0.557625 | 2_3:+526260 | None:intergenic |
| AGATCTGGCATCTCTTTCAC+AGG | 0.558087 | 2_3:+523416 | None:intergenic |
| ATTGATAATGTCCTTTGGCA+TGG | 0.562307 | 2_3:-522525 | Msa0269600:CDS |
| TGGAAAAGTTGCTGATCCAT+TGG | 0.563254 | 2_3:-522505 | Msa0269600:intron |
| CTTAGGTACCTATTGGAGAT+GGG | 0.563487 | 2_3:-522234 | Msa0269600:intron |
| TGAAAAGTATGGCAATAAGC+AGG | 0.568686 | 2_3:-525806 | Msa0269600:CDS |
| GCAAGGTCAGCCAAAGAGAC+CGG | 0.570499 | 2_3:+522060 | None:intergenic |
| AGCAATAACGACCTCACCGA+TGG | 0.573827 | 2_3:+525834 | None:intergenic |
| AATTTGAATTATGCAACTTG+GGG | 0.573910 | 2_3:-525919 | Msa0269600:CDS |
| CAATTTCACAAACACTTGGT+GGG | 0.576133 | 2_3:+526133 | None:intergenic |
| GGTCTCTTTGGCTGACCTTG+CGG | 0.576531 | 2_3:-522058 | Msa0269600:three_prime_UTR |
| TTGAACTGAATCTTATAGAG+GGG | 0.577803 | 2_3:+526261 | None:intergenic |
| TCTAAAATTGAAATGATGAT+GGG | 0.579002 | 2_3:-526301 | Msa0269600:five_prime_UTR |
| TGCAGATTCTTGGAGCAGAA+CGG | 0.585514 | 2_3:-524092 | Msa0269600:CDS |
| TTATGAATGGTGAAGCTGGA+AGG | 0.590746 | 2_3:-523165 | Msa0269600:intron |
| AAAATTGAAATGATGATGGG+TGG | 0.595679 | 2_3:-526298 | Msa0269600:five_prime_UTR |
| ATAGATTCAGATGTGTAGAT+GGG | 0.598351 | 2_3:-521834 | Msa0269600:three_prime_UTR |
| CTATGTATAAAGCTACAAAA+GGG | 0.600901 | 2_3:+526232 | None:intergenic |
| CTTGTAAGAAACAGTTCCAT+CGG | 0.605174 | 2_3:-525850 | Msa0269600:CDS |
| AAGGCAATTTCACAAACACT+TGG | 0.606245 | 2_3:+526129 | None:intergenic |
| CTGAATCTATTTCCCAGGCT+AGG | 0.613420 | 2_3:+521847 | None:intergenic |
| GAGTTACGTGGAAGATAGGT+CGG | 0.615102 | 2_3:-526061 | Msa0269600:five_prime_UTR |
| GCGGAGACTGCATCTATGCA+TGG | 0.626495 | 2_3:-525550 | Msa0269600:CDS |
| CGAAAATGTTCGGGAACCAG+AGG | 0.628168 | 2_3:-525746 | Msa0269600:intron |
| TTCAAATTAAATCTTGCACA+AGG | 0.634077 | 2_3:+525934 | None:intergenic |
| GATTCTAAGGCAGTTACGAG+CGG | 0.637191 | 2_3:-525569 | Msa0269600:CDS |
| AGTTCTCAGGTCCTTCCGCA+AGG | 0.637239 | 2_3:+522043 | None:intergenic |
| AGTGAAGATACATGTTCATG+AGG | 0.637993 | 2_3:+525964 | None:intergenic |
| GAGATGGGATGACAATCTGT+CGG | 0.642936 | 2_3:-522219 | Msa0269600:CDS |
| TGAACTGAATCTTATAGAGG+GGG | 0.657995 | 2_3:+526262 | None:intergenic |
| AGGTTGTTAGTCTTACGCCC+CGG | 0.659105 | 2_3:-525786 | Msa0269600:CDS |
| CTAAACGACCTGATTCTGGA+AGG | 0.659892 | 2_3:+523442 | None:intergenic |
| AGGAAAATAAGAGAGTTACG+TGG | 0.697686 | 2_3:-526073 | Msa0269600:five_prime_UTR |
| AAGAAACAGTTCCATCGGTG+AGG | 0.701250 | 2_3:-525845 | Msa0269600:CDS |
| GAGAACATAATCATACAACC+GGG | 0.710659 | 2_3:+525768 | None:intergenic |
| AGAACATAATCATACAACCG+GGG | 0.758190 | 2_3:+525769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTATTATTATTTTT+TGG | + | chr2_3:523645-523664 | None:intergenic | 0.0% |
| !! | AACAAAAATAAAGATAAAAA+AGG | + | chr2_3:521958-521977 | None:intergenic | 10.0% |
| !!! | TATATAGACTATTTTTATAT+TGG | - | chr2_3:524863-524882 | Msa0269600:intron | 10.0% |
| !! | TATTGTATAATGGTAATTAT+AGG | - | chr2_3:522107-522126 | Msa0269600:three_prime_UTR | 15.0% |
| !! | AAATACAATAAATCAGTAAT+GGG | + | chr2_3:522441-522460 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAATTGTGAAATT+TGG | - | chr2_3:523847-523866 | Msa0269600:intron | 15.0% |
| !! | TAAATTGTCTTAATCTTAAT+AGG | - | chr2_3:524212-524231 | Msa0269600:intron | 15.0% |
| !! | AAATTGTCTTAATCTTAATA+GGG | - | chr2_3:524213-524232 | Msa0269600:intron | 15.0% |
| !! | AAATCTTTCTATATTATCAT+AGG | + | chr2_3:524438-524457 | None:intergenic | 15.0% |
| !! | ATTCATAATTAGAAATTCTA+GGG | + | chr2_3:524966-524985 | None:intergenic | 15.0% |
| !! | GTATTAGTAATTAGAAAAAA+TGG | + | chr2_3:525824-525843 | None:intergenic | 15.0% |
| !!! | TCTAAAATTGAAATGATGAT+GGG | - | chr2_3:521842-521861 | Msa0269600:three_prime_UTR | 20.0% |
| !!! | TTAATTTGAATTATGCAACT+TGG | - | chr2_3:522222-522241 | Msa0269600:CDS | 20.0% |
| !! | TAATTTGAATTATGCAACTT+GGG | - | chr2_3:522223-522242 | Msa0269600:CDS | 20.0% |
| !! | CAAATACAATAAATCAGTAA+TGG | + | chr2_3:522442-522461 | None:intergenic | 20.0% |
| !! | AATTTGCATAACAAAATGAT+GGG | + | chr2_3:522638-522657 | None:intergenic | 20.0% |
| !! | AAATTTGCATAACAAAATGA+TGG | + | chr2_3:522639-522658 | None:intergenic | 20.0% |
| !!! | GAAAATTTAACTTTTTGAGT+AGG | + | chr2_3:523222-523241 | None:intergenic | 20.0% |
| !!! | TTTGATTTTAGGATTTAAGT+CGG | - | chr2_3:523802-523821 | Msa0269600:intron | 20.0% |
| !!! | TTTTAAATTGTGAAATTTGG+CGG | - | chr2_3:523850-523869 | Msa0269600:intron | 20.0% |
| !! | TGATACATTGTCTTTATAAT+AGG | - | chr2_3:523992-524011 | Msa0269600:intron | 20.0% |
| !!! | TCCTTTATTTTTAACAGTAT+AGG | - | chr2_3:524103-524122 | Msa0269600:CDS | 20.0% |
| !!! | ATTATATTGTTAATTTGACC+AGG | - | chr2_3:524650-524669 | Msa0269600:intron | 20.0% |
| !!! | TTATATTGTTAATTTGACCA+GGG | - | chr2_3:524651-524670 | Msa0269600:intron | 20.0% |
| !!! | AGTTTTAATGTAATGATACT+AGG | - | chr2_3:524910-524929 | Msa0269600:intron | 20.0% |
| !! | CATTCATAATTAGAAATTCT+AGG | + | chr2_3:524967-524986 | None:intergenic | 20.0% |
| !! | CTAGAATTTCTAATTATGAA+TGG | - | chr2_3:524965-524984 | Msa0269600:intron | 20.0% |
| !! | TTTGGATAAACTACTTAATT+AGG | + | chr2_3:525222-525241 | None:intergenic | 20.0% |
| !!! | ATTTGATGTTTCTCTTTTTT+AGG | - | chr2_3:525288-525307 | Msa0269600:intron | 20.0% |
| !!! | TTTGATGTTTCTCTTTTTTA+GGG | - | chr2_3:525289-525308 | Msa0269600:intron | 20.0% |
| !!! | GCATTAGAAATTTTAATCAA+CGG | - | chr2_3:525754-525773 | Msa0269600:CDS | 20.0% |
| !!! | AAATTTTAATCAACGGTTAA+TGG | - | chr2_3:525761-525780 | Msa0269600:CDS | 20.0% |
| !!! | CTCTAAAATTGAAATGATGA+TGG | - | chr2_3:521841-521860 | Msa0269600:three_prime_UTR | 25.0% |
| ! | CTATGTATAAAGCTACAAAA+GGG | + | chr2_3:521914-521933 | None:intergenic | 25.0% |
| ! | TCTATGTATAAAGCTACAAA+AGG | + | chr2_3:521915-521934 | None:intergenic | 25.0% |
| ! | TTCAAATTAAATCTTGCACA+AGG | + | chr2_3:522212-522231 | None:intergenic | 25.0% |
| ! | AATTTGAATTATGCAACTTG+GGG | - | chr2_3:522224-522243 | Msa0269600:CDS | 25.0% |
| ! | ATTATGTTCTCGAAAATGTT+CGG | - | chr2_3:522387-522406 | Msa0269600:CDS | 25.0% |
| ! | CATAAGTATGTGATATCAAT+TGG | - | chr2_3:522541-522560 | Msa0269600:CDS | 25.0% |
| ! | TTTGATTCATCTCAAACATA+AGG | + | chr2_3:523074-523093 | None:intergenic | 25.0% |
| !! | AGGTTTGTTCTAATGTTTAT+GGG | + | chr2_3:523275-523294 | None:intergenic | 25.0% |
| !! | TAGGTTTGTTCTAATGTTTA+TGG | + | chr2_3:523276-523295 | None:intergenic | 25.0% |
| ! | TTCTTTAAACTACCAAATGT+AGG | + | chr2_3:523295-523314 | None:intergenic | 25.0% |
| !! | ATTTGGTAGTTTAAAGAACA+AGG | - | chr2_3:523297-523316 | Msa0269600:intron | 25.0% |
| !! | TTTGGTAGTTTAAAGAACAA+GGG | - | chr2_3:523298-523317 | Msa0269600:intron | 25.0% |
| !!! | GCTAATTACCTTATTAGTTT+TGG | - | chr2_3:523437-523456 | Msa0269600:CDS | 25.0% |
| !!! | TTGATTTTAGGATTTAAGTC+GGG | - | chr2_3:523803-523822 | Msa0269600:intron | 25.0% |
| !! | TCAACATTTTACTTCATAGA+AGG | + | chr2_3:523972-523991 | None:intergenic | 25.0% |
| ! | GCCTATACTGTTAAAAATAA+AGG | + | chr2_3:524107-524126 | None:intergenic | 25.0% |
| ! | TATGTAGAACAAGATCTAAT+TGG | + | chr2_3:524161-524180 | None:intergenic | 25.0% |
| ! | ATTAGATCTTGTTCTACATA+TGG | - | chr2_3:524161-524180 | Msa0269600:intron | 25.0% |
| !! | GTCTCTATAACCTTAATTTT+TGG | - | chr2_3:524325-524344 | Msa0269600:intron | 25.0% |
| ! | TGAGTTTCATCCAAAAATTA+AGG | + | chr2_3:524338-524357 | None:intergenic | 25.0% |
| ! | GTTTACTCTTTAGATTCAAA+TGG | + | chr2_3:524414-524433 | None:intergenic | 25.0% |
| ! | AACAATGATGTGCATATTAT+AGG | - | chr2_3:524564-524583 | Msa0269600:intron | 25.0% |
| ! | GATGTCAAGTTTAAAAATCT+TGG | + | chr2_3:524608-524627 | None:intergenic | 25.0% |
| ! | TATATTTCAAAGTGAAAGTG+TGG | + | chr2_3:524847-524866 | None:intergenic | 25.0% |
| ! | ATTAAAACTTCAGAGAATTC+AGG | + | chr2_3:524899-524918 | None:intergenic | 25.0% |
| ! | TTTAATGTAATGATACTAGG+TGG | - | chr2_3:524913-524932 | Msa0269600:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr2_3:525097-525116 | None:intergenic | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | - | chr2_3:525223-525242 | Msa0269600:intron | 25.0% |
| ! | TTAAGTAGTTTATCCAAACA+GGG | - | chr2_3:525224-525243 | Msa0269600:intron | 25.0% |
| ! | CATTTATTGATGCTGAAAAA+AGG | - | chr2_3:525419-525438 | Msa0269600:intron | 25.0% |
| ! | TATTACAGATTGAACAATGT+TGG | + | chr2_3:525501-525520 | None:intergenic | 25.0% |
| !!! | TTGTAATTGATAATGTCCTT+TGG | - | chr2_3:525613-525632 | Msa0269600:intron | 25.0% |
| !! | ATATGATATATCGTCTCTTT+TGG | - | chr2_3:525883-525902 | Msa0269600:CDS | 25.0% |
| ! | TATAATGAGAATGTTTCCAT+TGG | - | chr2_3:526215-526234 | Msa0269600:intron | 25.0% |
| !! | AAAATTGAAATGATGATGGG+TGG | - | chr2_3:521845-521864 | Msa0269600:three_prime_UTR | 30.0% |
| TTGAACTGAATCTTATAGAG+GGG | + | chr2_3:521885-521904 | None:intergenic | 30.0% | |
| CTTGAACTGAATCTTATAGA+GGG | + | chr2_3:521886-521905 | None:intergenic | 30.0% | |
| TATAAAGCTACAAAAGGGTA+AGG | + | chr2_3:521909-521928 | None:intergenic | 30.0% | |
| TGTTGTATGTATATATCAGC+TGG | - | chr2_3:521974-521993 | Msa0269600:three_prime_UTR | 30.0% | |
| GACAAATAGTAGCATTAACT+TGG | - | chr2_3:522133-522152 | Msa0269600:three_prime_UTR | 30.0% | |
| !! | ATTAACTTGGTGTTTCATCA+TGG | - | chr2_3:522146-522165 | Msa0269600:three_prime_UTR | 30.0% |
| !! | TTAACTTGGTGTTTCATCAT+GGG | - | chr2_3:522147-522166 | Msa0269600:three_prime_UTR | 30.0% |
| AGTAAAGCTCAAAGATTGAA+AGG | - | chr2_3:522260-522279 | Msa0269600:intron | 30.0% | |
| GTAAAGCTCAAAGATTGAAA+GGG | - | chr2_3:522261-522280 | Msa0269600:intron | 30.0% | |
| ATTGCTAGTGATGAAAAGTA+TGG | - | chr2_3:522326-522345 | Msa0269600:intron | 30.0% | |
| TTATGTTCTCGAAAATGTTC+GGG | - | chr2_3:522388-522407 | Msa0269600:CDS | 30.0% | |
| TGGTTGTATTTCAGATTCTA+AGG | - | chr2_3:522561-522580 | Msa0269600:intron | 30.0% | |
| TGTACAAACGTCAAACAATT+TGG | + | chr2_3:522684-522703 | None:intergenic | 30.0% | |
| ! | ATTCAAAACTACTAGTTTCC+TGG | + | chr2_3:522867-522886 | None:intergenic | 30.0% |
| !!! | AACTAGTAGTTTTGAATCAG+TGG | - | chr2_3:522870-522889 | Msa0269600:intron | 30.0% |
| TCTGCATATTCATAGTTACA+AGG | + | chr2_3:522920-522939 | None:intergenic | 30.0% | |
| TTATGAGATAGAAGCTTTCA+AGG | + | chr2_3:522950-522969 | None:intergenic | 30.0% | |
| CTGTTGCTCAATTATAAGAT+AGG | + | chr2_3:523039-523058 | None:intergenic | 30.0% | |
| TCATCTCAAACATAAGGATA+GGG | + | chr2_3:523068-523087 | None:intergenic | 30.0% | |
| TTCATCTCAAACATAAGGAT+AGG | + | chr2_3:523069-523088 | None:intergenic | 30.0% | |
| ! | GGTTTGTTCTAATGTTTATG+GGG | + | chr2_3:523274-523293 | None:intergenic | 30.0% |
| CATTAGAACAAACCTACATT+TGG | - | chr2_3:523280-523299 | Msa0269600:intron | 30.0% | |
| ! | TTGGTAGTTTAAAGAACAAG+GGG | - | chr2_3:523299-523318 | Msa0269600:intron | 30.0% |
| GTAATTAGCAATCAAATACC+AGG | + | chr2_3:523342-523361 | None:intergenic | 30.0% | |
| GTACTGCAAAAAATGTATCT+TGG | + | chr2_3:523399-523418 | None:intergenic | 30.0% | |
| TAATTAGCAATCAAATACGC+GGG | + | chr2_3:523425-523444 | None:intergenic | 30.0% | |
| GTAATTAGCAATCAAATACG+CGG | + | chr2_3:523426-523445 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr2_3:523548-523567 | Msa0269600:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+TGG | - | chr2_3:523561-523580 | Msa0269600:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | chr2_3:523583-523602 | Msa0269600:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | - | chr2_3:523548-523567 | Msa0269600:intron | 30.0% | |
| !! | GTCGCAAAATCTTTGATTTT+AGG | - | chr2_3:523791-523810 | Msa0269600:intron | 30.0% |
| AATATGTATGTGATACCCTT+TGG | - | chr2_3:524366-524385 | Msa0269600:intron | 30.0% | |
| ATAACAAATGTGACTCCAAA+GGG | + | chr2_3:524384-524403 | None:intergenic | 30.0% | |
| TATAACAAATGTGACTCCAA+AGG | + | chr2_3:524385-524404 | None:intergenic | 30.0% | |
| TCTTTGCAGATTATGATGAA+CGG | - | chr2_3:524485-524504 | Msa0269600:intron | 30.0% | |
| TCTTTCTTTAGTAACTGATG+AGG | - | chr2_3:524626-524645 | Msa0269600:intron | 30.0% | |
| ! | GTTATGCTTTTGATCTCATA+AGG | - | chr2_3:524803-524822 | Msa0269600:intron | 30.0% |
| AGTGTGGAACTACAAATATT+TGG | + | chr2_3:524831-524850 | None:intergenic | 30.0% | |
| TCAAATAAGCTAGTTGAAAC+AGG | + | chr2_3:525031-525050 | None:intergenic | 30.0% | |
| !! | CTTATTTTCGTAAGCTATCT+AGG | - | chr2_3:525111-525130 | Msa0269600:intron | 30.0% |
| AAAGTCATAGCTGCATAAAA+AGG | + | chr2_3:525398-525417 | None:intergenic | 30.0% | |
| !! | TTTTGGGAAACATAGTTAGA+AGG | + | chr2_3:525536-525555 | None:intergenic | 30.0% |
| ! | GAACTGGTATAACAACTTTT+GGG | + | chr2_3:525552-525571 | None:intergenic | 30.0% |
| ! | TGAACTGGTATAACAACTTT+TGG | + | chr2_3:525553-525572 | None:intergenic | 30.0% |
| ! | TCGTATTTGTTCGTTATTTC+CGG | - | chr2_3:525674-525693 | Msa0269600:intron | 30.0% |
| AATACACTTCCAATACACTT+AGG | - | chr2_3:525839-525858 | Msa0269600:CDS | 30.0% | |
| ATACACTTCCAATACACTTA+GGG | - | chr2_3:525840-525859 | Msa0269600:CDS | 30.0% | |
| ATAAGTATAACTACCCTGAA+TGG | + | chr2_3:526003-526022 | None:intergenic | 30.0% | |
| TCTTAGAACTTGAGATTTAC+CGG | - | chr2_3:526064-526083 | Msa0269600:five_prime_UTR | 30.0% | |
| TTTGATTCTCACAACATTTG+TGG | + | chr2_3:526152-526171 | None:intergenic | 30.0% | |
| CAAATGTTGTGAGAATCAAA+TGG | - | chr2_3:526152-526171 | Msa0269600:intron | 30.0% | |
| AATAGATTCAGATGTGTAGA+TGG | - | chr2_3:526308-526327 | Msa0269600:five_prime_UTR | 30.0% | |
| TGAACTGAATCTTATAGAGG+GGG | + | chr2_3:521884-521903 | None:intergenic | 35.0% | |
| GCTTGAACTGAATCTTATAG+AGG | + | chr2_3:521887-521906 | None:intergenic | 35.0% | |
| CAATTTCACAAACACTTGGT+GGG | + | chr2_3:522013-522032 | None:intergenic | 35.0% | |
| AAGGCAATTTCACAAACACT+TGG | + | chr2_3:522017-522036 | None:intergenic | 35.0% | |
| AAATTGCCTTGCAGAGAAAT+TGG | - | chr2_3:522027-522046 | Msa0269600:three_prime_UTR | 35.0% | |
| TTGCAGAGAAATTGGCAAAA+GGG | - | chr2_3:522035-522054 | Msa0269600:three_prime_UTR | 35.0% | |
| !! | CAAAAGGGCTTTTGAGAATA+AGG | - | chr2_3:522050-522069 | Msa0269600:three_prime_UTR | 35.0% |
| AGGAAAATAAGAGAGTTACG+TGG | - | chr2_3:522070-522089 | Msa0269600:three_prime_UTR | 35.0% | |
| TAGGTCGGTGTATTGTATAA+TGG | - | chr2_3:522097-522116 | Msa0269600:three_prime_UTR | 35.0% | |
| AGTGAAGATACATGTTCATG+AGG | + | chr2_3:522182-522201 | None:intergenic | 35.0% | |
| TCTTTGAGCTTTACTAGTAC+TGG | + | chr2_3:522255-522274 | None:intergenic | 35.0% | |
| CTTGTAAGAAACAGTTCCAT+CGG | - | chr2_3:522293-522312 | Msa0269600:intron | 35.0% | |
| ! | TGAAAAGTATGGCAATAAGC+AGG | - | chr2_3:522337-522356 | Msa0269600:intron | 35.0% |
| AGAACATAATCATACAACCG+GGG | + | chr2_3:522377-522396 | None:intergenic | 35.0% | |
| GAGAACATAATCATACAACC+GGG | + | chr2_3:522378-522397 | None:intergenic | 35.0% | |
| CGAGAACATAATCATACAAC+CGG | + | chr2_3:522379-522398 | None:intergenic | 35.0% | |
| TTTGCAAGATTCTGATTCCA+TGG | - | chr2_3:522485-522504 | Msa0269600:intron | 35.0% | |
| CTTATGCTCGAAAAACACAA+GGG | + | chr2_3:522527-522546 | None:intergenic | 35.0% | |
| ACTTATGCTCGAAAAACACA+AGG | + | chr2_3:522528-522547 | None:intergenic | 35.0% | |
| TATTCACACAGTTCACTCAT+TGG | - | chr2_3:522658-522677 | Msa0269600:intron | 35.0% | |
| CATGAAAATCTATACTGACC+AGG | - | chr2_3:522846-522865 | Msa0269600:intron | 35.0% | |
| !!! | TAGTTTTGAATCAGTGGAGT+TGG | - | chr2_3:522876-522895 | Msa0269600:intron | 35.0% |
| !!! | GGAGTTGGTTTTGAACATAT+TGG | - | chr2_3:522891-522910 | Msa0269600:intron | 35.0% |
| GGATATGATTGGATAAGAGT+AGG | - | chr2_3:522985-523004 | Msa0269600:intron | 35.0% | |
| TGATTGGATAAGAGTAGGAT+AGG | - | chr2_3:522990-523009 | Msa0269600:intron | 35.0% | |
| GATTGGATAAGAGTAGGATA+GGG | - | chr2_3:522991-523010 | Msa0269600:intron | 35.0% | |
| GACAGACACCAAAACTAATA+AGG | + | chr2_3:523448-523467 | None:intergenic | 35.0% | |
| TCAATATCTTGTCCATGCTA+TGG | - | chr2_3:523468-523487 | Msa0269600:CDS | 35.0% | |
| CATGCTATGGTTGTCAAAAT+CGG | - | chr2_3:523481-523500 | Msa0269600:intron | 35.0% | |
| ATGCTATGGTTGTCAAAATC+GGG | - | chr2_3:523482-523501 | Msa0269600:intron | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | - | chr2_3:523518-523537 | Msa0269600:intron | 35.0% | |
| CTGTAAACTCGCAATCAAAA+TGG | - | chr2_3:523609-523628 | Msa0269600:intron | 35.0% | |
| AAACTCGCAATCAAAATGGA+TGG | - | chr2_3:523613-523632 | Msa0269600:intron | 35.0% | |
| !! | TCGATGGATTTTGCTTAGTT+TGG | - | chr2_3:523730-523749 | Msa0269600:intron | 35.0% |
| !! | CGATGGATTTTGCTTAGTTT+GGG | - | chr2_3:523731-523750 | Msa0269600:intron | 35.0% |
| ! | CTTAGTTTGGGATTCTACTA+TGG | - | chr2_3:523743-523762 | Msa0269600:intron | 35.0% |
| CTATGGATTTAAGTCGTTGA+AGG | - | chr2_3:523760-523779 | Msa0269600:intron | 35.0% | |
| TTACTTCATAGAAGGCAAGT+GGG | + | chr2_3:523964-523983 | None:intergenic | 35.0% | |
| TTTACTTCATAGAAGGCAAG+TGG | + | chr2_3:523965-523984 | None:intergenic | 35.0% | |
| ATAGTTATTCAATGCCGTGT+GGG | + | chr2_3:524279-524298 | None:intergenic | 35.0% | |
| ! | TCTGAAGAGTACACAAATGA+AGG | + | chr2_3:524305-524324 | None:intergenic | 35.0% |
| !! | AAGAAGTATTATCAGCTTGC+TGG | - | chr2_3:524762-524781 | Msa0269600:intron | 35.0% |
| TACTAGGTGGATGTAAAACT+TGG | - | chr2_3:524926-524945 | Msa0269600:intron | 35.0% | |
| CTAATTATGAATGGTGAAGC+TGG | - | chr2_3:524974-524993 | Msa0269600:intron | 35.0% | |
| !! | ATTGATAATGTCCTTTGGCA+TGG | - | chr2_3:525618-525637 | Msa0269600:intron | 35.0% |
| CTGATCCATTGGTGAATAAA+TGG | - | chr2_3:525649-525668 | Msa0269600:intron | 35.0% | |
| AGAAGTCAAGGTCATTTAAC+CGG | + | chr2_3:525696-525715 | None:intergenic | 35.0% | |
| ACATGGTACATTAGAAGTCA+AGG | + | chr2_3:525708-525727 | None:intergenic | 35.0% | |
| ! | TGATATATCGTCTCTTTTGG+TGG | - | chr2_3:525886-525905 | Msa0269600:CDS | 35.0% |
| TCATTGCAATTGAACCATTC+AGG | - | chr2_3:525986-526005 | Msa0269600:CDS | 35.0% | |
| CATTGCAATTGAACCATTCA+GGG | - | chr2_3:525987-526006 | Msa0269600:CDS | 35.0% | |
| TTCTTCATTATGCAGTTCTC+AGG | + | chr2_3:526116-526135 | None:intergenic | 35.0% | |
| ATGAGAATGTTTCCATTGGA+TGG | - | chr2_3:526219-526238 | Msa0269600:intron | 35.0% | |
| CTGTAATGTTATCCATCCAA+TGG | + | chr2_3:526234-526253 | None:intergenic | 35.0% | |
| CATTGGATGGATAACATTAC+AGG | - | chr2_3:526232-526251 | Msa0269600:five_prime_UTR | 35.0% | |
| GCAATTTCACAAACACTTGG+TGG | + | chr2_3:522014-522033 | None:intergenic | 40.0% | |
| ! | CTTTTGCCAATTTCTCTGCA+AGG | + | chr2_3:522036-522055 | None:intergenic | 40.0% |
| CTTGCAGAGAAATTGGCAAA+AGG | - | chr2_3:522034-522053 | Msa0269600:three_prime_UTR | 40.0% | |
| AAGAGAGTTACGTGGAAGAT+AGG | - | chr2_3:522078-522097 | Msa0269600:three_prime_UTR | 40.0% | |
| GCAGTCATATATTCAAGCCA+TGG | + | chr2_3:522505-522524 | None:intergenic | 40.0% | |
| TATGTCTTCGCTATGCAAGT+TGG | - | chr2_3:522705-522724 | Msa0269600:CDS | 40.0% | |
| ATGTCTTCGCTATGCAAGTT+GGG | - | chr2_3:522706-522725 | Msa0269600:CDS | 40.0% | |
| CTTCTATCTCATAAAGTCCC+CGG | - | chr2_3:522956-522975 | Msa0269600:intron | 40.0% | |
| TCCAATCATATCCACCAAAC+CGG | + | chr2_3:522978-522997 | None:intergenic | 40.0% | |
| TTTAAAGAACAAGGGGCTTC+AGG | - | chr2_3:523306-523325 | Msa0269600:intron | 40.0% | |
| !! | CGATTTTGACAACCATAGCA+TGG | + | chr2_3:523483-523502 | None:intergenic | 40.0% |
| CAAAATCGGGACTTTACTTC+AGG | - | chr2_3:523495-523514 | Msa0269600:intron | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | - | chr2_3:523504-523523 | Msa0269600:intron | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | - | chr2_3:523519-523538 | Msa0269600:intron | 40.0% | |
| ATAATAGGTGTCTCCTGATC+AGG | - | chr2_3:524007-524026 | Msa0269600:intron | 40.0% | |
| AGACATTCATGTAACCCACA+CGG | - | chr2_3:524262-524281 | Msa0269600:intron | 40.0% | |
| CATAGTTATTCAATGCCGTG+TGG | + | chr2_3:524280-524299 | None:intergenic | 40.0% | |
| CTTAGCAACATCAAGAGATC+TGG | + | chr2_3:524745-524764 | None:intergenic | 40.0% | |
| TTATGAATGGTGAAGCTGGA+AGG | - | chr2_3:524978-524997 | Msa0269600:intron | 40.0% | |
| TAAGCTAGTTGAAACAGGCA+CGG | + | chr2_3:525026-525045 | None:intergenic | 40.0% | |
| TTGTCCTCATTAGACTGTAG+TGG | - | chr2_3:525249-525268 | Msa0269600:intron | 40.0% | |
| CTCATTAGACTGTAGTGGTT+GGG | - | chr2_3:525254-525273 | Msa0269600:intron | 40.0% | |
| !!! | TTTTGAGATGCTACTGCAAC+TGG | - | chr2_3:525456-525475 | Msa0269600:intron | 40.0% |
| TGGAAAAGTTGCTGATCCAT+TGG | - | chr2_3:525638-525657 | Msa0269600:intron | 40.0% | |
| CGAAGCCATTTATTCACCAA+TGG | + | chr2_3:525657-525676 | None:intergenic | 40.0% | |
| ACTTCTAATGTACCATGTGC+AGG | - | chr2_3:525710-525729 | Msa0269600:intron | 40.0% | |
| TAAGCGTGTAAGCATCAGTA+TGG | - | chr2_3:525788-525807 | Msa0269600:CDS | 40.0% | |
| GAATCTCTCCCTAAGTGTAT+TGG | + | chr2_3:525851-525870 | None:intergenic | 40.0% | |
| CTTAGGTACCTATTGGAGAT+GGG | - | chr2_3:525909-525928 | Msa0269600:CDS | 40.0% | |
| ATTGTCATCCCATCTCCAAT+AGG | + | chr2_3:525920-525939 | None:intergenic | 40.0% | |
| TTGAGATTTACCGGTCTCTT+TGG | - | chr2_3:526073-526092 | Msa0269600:five_prime_UTR | 40.0% | |
| ATGGATAACATTACAGGTGC+AGG | - | chr2_3:526238-526257 | Msa0269600:five_prime_UTR | 40.0% | |
| !! | TTTTTCTAAGAGCCTAGCCT+GGG | - | chr2_3:526284-526303 | Msa0269600:five_prime_UTR | 40.0% |
| CACATCTGAATCTATTTCCC+AGG | + | chr2_3:526304-526323 | None:intergenic | 40.0% | |
| GAGTTACGTGGAAGATAGGT+CGG | - | chr2_3:522082-522101 | Msa0269600:three_prime_UTR | 45.0% | |
| AAGAAACAGTTCCATCGGTG+AGG | - | chr2_3:522298-522317 | Msa0269600:intron | 45.0% | |
| !! | GATTCTAAGGCAGTTACGAG+CGG | - | chr2_3:522574-522593 | Msa0269600:intron | 45.0% |
| TGTCTTCGCTATGCAAGTTG+GGG | - | chr2_3:522707-522726 | Msa0269600:CDS | 45.0% | |
| ! | TGGGGTTTCTACTGCACTTT+TGG | - | chr2_3:522725-522744 | Msa0269600:CDS | 45.0% |
| ATCTCATAAAGTCCCCGGTT+TGG | - | chr2_3:522961-522980 | Msa0269600:intron | 45.0% | |
| CAATCATATCCACCAAACCG+GGG | + | chr2_3:522976-522995 | None:intergenic | 45.0% | |
| CCAATCATATCCACCAAACC+GGG | + | chr2_3:522977-522996 | None:intergenic | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | - | chr2_3:523503-523522 | Msa0269600:intron | 45.0% | |
| GCAATGCTTGTGCAGATTCT+TGG | - | chr2_3:524041-524060 | Msa0269600:intron | 45.0% | |
| TGCAGATTCTTGGAGCAGAA+CGG | - | chr2_3:524051-524070 | Msa0269600:intron | 45.0% | |
| GCAGAACGGTGTATTGAAGT+TGG | - | chr2_3:524065-524084 | Msa0269600:intron | 45.0% | |
| AATGCACCACATCAGTTGTG+CGG | - | chr2_3:524523-524542 | Msa0269600:intron | 45.0% | |
| ATAGATCCGCACAACTGATG+TGG | + | chr2_3:524532-524551 | None:intergenic | 45.0% | |
| GCATTAGTCCTTCCAGAATC+AGG | - | chr2_3:524693-524712 | Msa0269600:intron | 45.0% | |
| CTAAACGACCTGATTCTGGA+AGG | + | chr2_3:524704-524723 | None:intergenic | 45.0% | |
| GCAACTAAACGACCTGATTC+TGG | + | chr2_3:524708-524727 | None:intergenic | 45.0% | |
| AGATCTGGCATCTCTTTCAC+AGG | + | chr2_3:524730-524749 | None:intergenic | 45.0% | |
| ! | GCTTGCTGGTGTTTCACATA+AGG | - | chr2_3:524776-524795 | Msa0269600:intron | 45.0% |
| CCAACCACTACAGTCTAATG+AGG | + | chr2_3:525256-525275 | None:intergenic | 45.0% | |
| CCTCATTAGACTGTAGTGGT+TGG | - | chr2_3:525253-525272 | Msa0269600:intron | 45.0% | |
| CAGCACTTCATTCAGTGAAC+TGG | + | chr2_3:525568-525587 | None:intergenic | 45.0% | |
| !! | ACTGAATGAAGTGCTGTTGC+AGG | - | chr2_3:525572-525591 | Msa0269600:intron | 45.0% |
| ! | CAGCAACTTTTCCATGCCAA+AGG | + | chr2_3:525632-525651 | None:intergenic | 45.0% |
| !! | TAGTGTCACTTACCTGCACA+TGG | + | chr2_3:525725-525744 | None:intergenic | 45.0% |
| ACACTTAGGGAGAGATTCTC+AGG | - | chr2_3:525853-525872 | Msa0269600:CDS | 45.0% | |
| !! | ATCGTCTCTTTTGGTGGCTT+AGG | - | chr2_3:525892-525911 | Msa0269600:CDS | 45.0% |
| ! | TTGGTGGCTTAGGTACCTAT+TGG | - | chr2_3:525902-525921 | Msa0269600:CDS | 45.0% |
| GCTTAGGTACCTATTGGAGA+TGG | - | chr2_3:525908-525927 | Msa0269600:CDS | 45.0% | |
| GAGATGGGATGACAATCTGT+CGG | - | chr2_3:525924-525943 | Msa0269600:CDS | 45.0% | |
| !! | GTTTTTCTAAGAGCCTAGCC+TGG | - | chr2_3:526283-526302 | Msa0269600:five_prime_UTR | 45.0% |
| CTGAATCTATTTCCCAGGCT+AGG | + | chr2_3:526299-526318 | None:intergenic | 45.0% | |
| !! | AATAATAAATATGTTATAAA+TGG | - | chr2_3:523654-523673 | Msa0269600:intron | 5.0% |
| ! | CACAAACACTTGGTGGGCAA+TGG | + | chr2_3:522007-522026 | None:intergenic | 50.0% |
| AGCAATAACGACCTCACCGA+TGG | + | chr2_3:522312-522331 | None:intergenic | 50.0% | |
| !! | AGGTTGTTAGTCTTACGCCC+CGG | - | chr2_3:522357-522376 | Msa0269600:CDS | 50.0% |
| CGAAAATGTTCGGGAACCAG+AGG | - | chr2_3:522397-522416 | Msa0269600:CDS | 50.0% | |
| TCTTCGTCAATCCTCACCTC+TGG | + | chr2_3:522416-522435 | None:intergenic | 50.0% | |
| TATGCATGGAAGCCAGATGC+AGG | - | chr2_3:522607-522626 | Msa0269600:intron | 50.0% | |
| TGATGGGAGATACCTGCATC+TGG | + | chr2_3:522622-522641 | None:intergenic | 50.0% | |
| !! | TCATAAAGTCCCCGGTTTGG+TGG | - | chr2_3:522964-522983 | Msa0269600:intron | 50.0% |
| !! | CCCGGTTTGGTGGATATGAT+TGG | - | chr2_3:522974-522993 | Msa0269600:intron | 50.0% |
| TCCTGATCAGGCACAACTAC+TGG | - | chr2_3:524019-524038 | Msa0269600:intron | 50.0% | |
| AATGAGGACAACGCCCTGTT+TGG | + | chr2_3:525240-525259 | None:intergenic | 50.0% | |
| !! | ATGAAGTGCTGTTGCAGGTG+AGG | - | chr2_3:525577-525596 | Msa0269600:intron | 50.0% |
| ! | CACTTGGTGGGCAATGGACT+TGG | + | chr2_3:522001-522020 | None:intergenic | 55.0% |
| ATGTTCGGGAACCAGAGGTG+AGG | - | chr2_3:522402-522421 | Msa0269600:CDS | 55.0% | |
| GCGGAGACTGCATCTATGCA+TGG | - | chr2_3:522593-522612 | Msa0269600:intron | 55.0% | |
| AACAAGGGGCTTCAGGTGTC+TGG | - | chr2_3:523313-523332 | Msa0269600:intron | 55.0% | |
| GCTTCAGGTGTCTGGTATCC+TGG | - | chr2_3:523321-523340 | Msa0269600:intron | 55.0% | |
| GCCAGTAGTTGTGCCTGATC+AGG | + | chr2_3:524023-524042 | None:intergenic | 55.0% | |
| TCGCTAGTGATGAGTAGCCC+TGG | + | chr2_3:524671-524690 | None:intergenic | 55.0% | |
| ! | GTGCTGTTGCAGGTGAGGAT+TGG | - | chr2_3:525582-525601 | Msa0269600:intron | 55.0% |
| CTGTTGCAGGTGAGGATTGG+AGG | - | chr2_3:525585-525604 | Msa0269600:intron | 55.0% | |
| GCAAGGTCAGCCAAAGAGAC+CGG | + | chr2_3:526086-526105 | None:intergenic | 55.0% | |
| GGTCTCTTTGGCTGACCTTG+CGG | - | chr2_3:526085-526104 | Msa0269600:five_prime_UTR | 55.0% | |
| TCTTTGGCTGACCTTGCGGA+AGG | - | chr2_3:526089-526108 | Msa0269600:five_prime_UTR | 55.0% | |
| AGTTCTCAGGTCCTTCCGCA+AGG | + | chr2_3:526103-526122 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 521834 | 526331 | 521834 | ID=Msa0269600;Name=Msa0269600 |
| chr2_3 | mRNA | 521834 | 526331 | 521834 | ID=Msa0269600-mRNA-1;Parent=Msa0269600;Name=Msa0269600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=220|1|1|1|0.88|0.8|10|376|296 |
| chr2_3 | exon | 521834 | 522251 | 521834 | ID=Msa0269600-mRNA-1:exon:256;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 522356 | 522433 | 522356 | ID=Msa0269600-mRNA-1:exon:255;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 522506 | 522571 | 522506 | ID=Msa0269600-mRNA-1:exon:254;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 522688 | 522757 | 522688 | ID=Msa0269600-mRNA-1:exon:253;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 523166 | 523233 | 523166 | ID=Msa0269600-mRNA-1:exon:252;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 523368 | 523493 | 523368 | ID=Msa0269600-mRNA-1:exon:251;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 524068 | 524151 | 524068 | ID=Msa0269600-mRNA-1:exon:250;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 525537 | 525590 | 525537 | ID=Msa0269600-mRNA-1:exon:249;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 525747 | 526157 | 525747 | ID=Msa0269600-mRNA-1:exon:248;Parent=Msa0269600-mRNA-1 |
| chr2_3 | exon | 526220 | 526331 | 526220 | ID=Msa0269600-mRNA-1:exon:247;Parent=Msa0269600-mRNA-1 |
| chr2_3 | five_prime_UTR | 526220 | 526331 | 526220 | ID=Msa0269600-mRNA-1:five_prime_utr;Parent=Msa0269600-mRNA-1 |
| chr2_3 | five_prime_UTR | 526050 | 526157 | 526050 | ID=Msa0269600-mRNA-1:five_prime_utr;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 525747 | 526049 | 525747 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 525537 | 525590 | 525537 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 524068 | 524151 | 524068 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 523368 | 523493 | 523368 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 523166 | 523233 | 523166 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 522688 | 522757 | 522688 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 522506 | 522571 | 522506 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 522356 | 522433 | 522356 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | CDS | 522210 | 522251 | 522210 | ID=Msa0269600-mRNA-1:cds;Parent=Msa0269600-mRNA-1 |
| chr2_3 | three_prime_UTR | 521834 | 522209 | 521834 | ID=Msa0269600-mRNA-1:three_prime_utr;Parent=Msa0269600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
