Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317830 | XP_013464364.1 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317830 | sp|Q9XGP7|OMT15_ORYSJ | 44.915 | 236 | 116 | 5 | 73 | 295 | 16 | 250 | 1.73e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0317830 | -0.823084 | 1.675214e-53 | -8.615850e-47 |
| Msa0048020 | Msa0317830 | 0.800139 | 1.657828e-48 | -8.615850e-47 |
| Msa0141430 | Msa0317830 | 0.800028 | 1.746559e-48 | -8.615850e-47 |
| Msa0213080 | Msa0317830 | 0.802434 | 5.620454e-49 | -8.615850e-47 |
| Msa0213200 | Msa0317830 | 0.839879 | 1.216776e-57 | -8.615850e-47 |
| Msa0269600 | Msa0317830 | 0.851397 | 9.112833e-61 | -8.615850e-47 |
| Msa0317830 | Msa0350020 | 0.803278 | 3.762371e-49 | -8.615850e-47 |
| Msa0317830 | Msa0388260 | -0.800373 | 1.486102e-48 | -8.615850e-47 |
| Msa0317830 | Msa0427090 | 0.817416 | 3.335883e-52 | -8.615850e-47 |
| Msa0317830 | Msa0429520 | -0.800207 | 1.605906e-48 | -8.615850e-47 |
| Msa0317830 | Msa0473490 | 0.821500 | 3.905909e-53 | -8.615850e-47 |
| Msa0317830 | Msa0526640 | -0.813698 | 2.243943e-51 | -8.615850e-47 |
| Msa0317830 | Msa0546380 | 0.807117 | 5.912872e-50 | -8.615850e-47 |
| Msa0317830 | Msa0589600 | 0.805167 | 1.521303e-49 | -8.615850e-47 |
| Msa0317830 | Msa0707780 | 0.800465 | 1.422809e-48 | -8.615850e-47 |
| Msa0317830 | Msa0770430 | 0.815818 | 7.609495e-52 | -8.615850e-47 |
| Msa0317830 | Msa0875630 | 0.805510 | 1.289544e-49 | -8.615850e-47 |
| Msa0317830 | Msa0955260 | 0.800115 | 1.676864e-48 | -8.615850e-47 |
| Msa0317830 | Msa0970050 | 0.807454 | 5.014128e-50 | -8.615850e-47 |
| Msa0317830 | Msa1033440 | -0.814474 | 1.512284e-51 | -8.615850e-47 |
| Msa0317830 | Msa1146150 | 0.801541 | 8.577003e-49 | -8.615850e-47 |
| Msa0317830 | Msa1149760 | 0.811795 | 5.855290e-51 | -8.615850e-47 |
| Msa0317830 | Msa1183390 | 0.804769 | 1.842483e-49 | -8.615850e-47 |
| Msa0317830 | Msa1264560 | 0.814098 | 1.831368e-51 | -8.615850e-47 |
| Msa0317830 | Msa1309240 | 0.820096 | 8.217840e-53 | -8.615850e-47 |
| Msa0317830 | Msa1309360 | 0.803249 | 3.815411e-49 | -8.615850e-47 |
| Msa0317830 | Msa1310110 | 0.803627 | 3.185009e-49 | -8.615850e-47 |
| Msa0317830 | Msa1326000 | 0.828504 | 8.667938e-55 | -8.615850e-47 |
| Msa0317830 | Msa1385620 | 0.802779 | 4.771353e-49 | -8.615850e-47 |
| Msa0317830 | Msa1385900 | 0.809763 | 1.611075e-50 | -8.615850e-47 |
| Msa0317830 | Msa1412520 | 0.810000 | 1.432598e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317830 | MtrunA17_Chr2g0312921 | 95.973 | 298 | 10 | 2 | 1 | 296 | 1 | 298 | 0.0 | 584 |
| Msa0317830 | MtrunA17_Chr8g0344401 | 39.171 | 217 | 122 | 4 | 89 | 295 | 17 | 233 | 4.45e-47 | 157 |
| Msa0317830 | MtrunA17_Chr4g0044581 | 39.171 | 217 | 122 | 4 | 89 | 295 | 29 | 245 | 4.07e-46 | 155 |
| Msa0317830 | MtrunA17_Chr4g0051041 | 38.914 | 221 | 122 | 5 | 86 | 294 | 8 | 227 | 4.54e-45 | 152 |
| Msa0317830 | MtrunA17_Chr4g0053031 | 37.500 | 224 | 116 | 6 | 89 | 295 | 30 | 246 | 3.37e-43 | 148 |
| Msa0317830 | MtrunA17_Chr4g0053241 | 38.496 | 226 | 111 | 7 | 89 | 295 | 30 | 246 | 3.12e-41 | 143 |
| Msa0317830 | MtrunA17_Chr4g0053331 | 37.445 | 227 | 112 | 9 | 89 | 295 | 25 | 241 | 3.75e-41 | 142 |
| Msa0317830 | MtrunA17_Chr8g0389361 | 40.741 | 216 | 119 | 4 | 89 | 295 | 23 | 238 | 6.43e-41 | 142 |
| Msa0317830 | MtrunA17_Chr6g0487981 | 36.111 | 216 | 129 | 3 | 89 | 295 | 21 | 236 | 2.01e-40 | 140 |
| Msa0317830 | MtrunA17_Chr4g0053021 | 36.000 | 225 | 118 | 7 | 89 | 295 | 28 | 244 | 2.03e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317830 | AT3G62000.1 | 75.099 | 253 | 60 | 1 | 47 | 296 | 26 | 278 | 1.61e-141 | 400 |
| Msa0317830 | AT3G62000.2 | 73.859 | 241 | 60 | 1 | 47 | 284 | 26 | 266 | 2.22e-129 | 372 |
| Msa0317830 | AT3G61990.1 | 75.877 | 228 | 52 | 1 | 69 | 296 | 66 | 290 | 4.28e-124 | 356 |
| Msa0317830 | AT4G26220.1 | 42.009 | 219 | 112 | 4 | 89 | 295 | 15 | 230 | 3.82e-52 | 171 |
| Msa0317830 | AT4G34050.1 | 39.631 | 217 | 121 | 4 | 89 | 295 | 41 | 257 | 1.52e-47 | 160 |
| Msa0317830 | AT4G34050.3 | 39.631 | 217 | 121 | 4 | 89 | 295 | 68 | 284 | 3.15e-47 | 160 |
| Msa0317830 | AT1G67990.1 | 39.171 | 217 | 121 | 4 | 89 | 295 | 16 | 231 | 2.51e-45 | 153 |
| Msa0317830 | AT1G67980.1 | 38.710 | 217 | 121 | 4 | 89 | 295 | 16 | 230 | 3.91e-45 | 153 |
| Msa0317830 | AT1G24735.1 | 35.484 | 217 | 130 | 3 | 89 | 295 | 22 | 238 | 3.19e-41 | 143 |
| Msa0317830 | AT1G24735.3 | 35.789 | 190 | 117 | 1 | 111 | 295 | 4 | 193 | 8.02e-39 | 135 |
| Msa0317830 | AT1G24735.2 | 35.789 | 190 | 117 | 1 | 111 | 295 | 100 | 289 | 4.27e-38 | 136 |
| Msa0317830 | AT1G67980.2 | 32.051 | 156 | 99 | 2 | 145 | 295 | 9 | 162 | 6.97e-21 | 87.8 |
| Msa0317830 | AT4G34050.2 | 39.316 | 117 | 64 | 3 | 186 | 295 | 30 | 146 | 1.13e-20 | 86.7 |
Find 100 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTGCAATTGAACCATTC+AGG | 0.256625 | 2_4:+15889633 | Msa0317830:three_prime_UTR |
| CATTGGATGGATAACATTAC+AGG | 0.280753 | 2_4:+15889879 | Msa0317830:three_prime_UTR |
| GCAATGCTTGTGCAGATTCT+TGG | 0.287926 | 2_4:+15887688 | Msa0317830:CDS |
| GCAACTAAACGACCTGATTC+TGG | 0.314053 | 2_4:-15888352 | None:intergenic |
| TTGAGATTTACCGGTCTCTT+TGG | 0.314458 | 2_4:+15889720 | Msa0317830:three_prime_UTR |
| CATTCATAATTAGAAATTCT+AGG | 0.329217 | 2_4:-15888611 | None:intergenic |
| TGGTTGTATTTCAGATTCTA+AGG | 0.329998 | 2_4:+15886209 | Msa0317830:intron |
| AAATTGCCTTGCAGAGAAAT+TGG | 0.331385 | 2_4:+15885675 | Msa0317830:five_prime_UTR |
| TCTTAGAACTTGAGATTTAC+CGG | 0.357191 | 2_4:+15889711 | Msa0317830:three_prime_UTR |
| TATTGTATAATGGTAATTAT+AGG | 0.372911 | 2_4:+15885755 | Msa0317830:exon |
| AATAGATTCAGATGTGTAGA+TGG | 0.376969 | 2_4:+15889955 | Msa0317830:three_prime_UTR |
| TTTGATTCTCACAACATTTG+TGG | 0.377153 | 2_4:-15889796 | None:intergenic |
| ATTATGTTCTCGAAAATGTT+CGG | 0.386238 | 2_4:+15886035 | Msa0317830:CDS |
| CGAGAACATAATCATACAAC+CGG | 0.392943 | 2_4:-15886024 | None:intergenic |
| GCATTAGTCCTTCCAGAATC+AGG | 0.399144 | 2_4:+15888340 | Msa0317830:CDS |
| TTCTTCATTATGCAGTTCTC+AGG | 0.409880 | 2_4:-15889760 | None:intergenic |
| TTGGTGGCTTAGGTACCTAT+TGG | 0.412007 | 2_4:+15889549 | Msa0317830:intron |
| TCTTTGAGCTTTACTAGTAC+TGG | 0.412893 | 2_4:-15885900 | None:intergenic |
| TTATGTTCTCGAAAATGTTC+GGG | 0.415226 | 2_4:+15886036 | Msa0317830:CDS |
| ATAATAGGTGTCTCCTGATC+AGG | 0.424494 | 2_4:+15887654 | Msa0317830:intron |
| CTAGAATTTCTAATTATGAA+TGG | 0.426859 | 2_4:+15888612 | Msa0317830:CDS |
| GCTTGCTGGTGTTTCACATA+AGG | 0.430882 | 2_4:+15888423 | Msa0317830:CDS |
| AAGAAGTATTATCAGCTTGC+TGG | 0.435455 | 2_4:+15888409 | Msa0317830:CDS |
| GCCAGTAGTTGTGCCTGATC+AGG | 0.436714 | 2_4:-15887667 | None:intergenic |
| TCTATGTATAAAGCTACAAA+AGG | 0.436800 | 2_4:-15885560 | None:intergenic |
| ATTGCTAGTGATGAAAAGTA+TGG | 0.438769 | 2_4:+15885974 | Msa0317830:CDS |
| TCCTGATCAGGCACAACTAC+TGG | 0.443207 | 2_4:+15887666 | Msa0317830:CDS |
| ATTAACTTGGTGTTTCATCA+TGG | 0.444634 | 2_4:+15885794 | Msa0317830:CDS |
| TAATTTGAATTATGCAACTT+GGG | 0.452966 | 2_4:+15885871 | Msa0317830:CDS |
| TTGTAATTGATAATGTCCTT+TGG | 0.454375 | 2_4:+15889260 | Msa0317830:CDS |
| CTCTAAAATTGAAATGATGA+TGG | 0.456173 | 2_4:+15885489 | Msa0317830:five_prime_UTR |
| CTTGCAGAGAAATTGGCAAA+AGG | 0.457524 | 2_4:+15885682 | Msa0317830:five_prime_UTR |
| AAGAGAGTTACGTGGAAGAT+AGG | 0.465396 | 2_4:+15885726 | Msa0317830:five_prime_UTR |
| ATGAGAATGTTTCCATTGGA+TGG | 0.468886 | 2_4:+15889866 | Msa0317830:three_prime_UTR |
| TAAGCGTGTAAGCATCAGTA+TGG | 0.471614 | 2_4:+15889435 | Msa0317830:CDS |
| ATTGTCATCCCATCTCCAAT+AGG | 0.475142 | 2_4:-15889564 | None:intergenic |
| CTTAGCAACATCAAGAGATC+TGG | 0.475859 | 2_4:-15888389 | None:intergenic |
| TTGCAGAGAAATTGGCAAAA+GGG | 0.478046 | 2_4:+15885683 | Msa0317830:five_prime_UTR |
| CATTGCAATTGAACCATTCA+GGG | 0.480710 | 2_4:+15889634 | Msa0317830:three_prime_UTR |
| CTAATTATGAATGGTGAAGC+TGG | 0.488384 | 2_4:+15888621 | Msa0317830:CDS |
| AGTAAAGCTCAAAGATTGAA+AGG | 0.493916 | 2_4:+15885908 | Msa0317830:CDS |
| TGATGGGAGATACCTGCATC+TGG | 0.495028 | 2_4:-15886267 | None:intergenic |
| CTGTTGCAGGTGAGGATTGG+AGG | 0.496022 | 2_4:+15889232 | Msa0317830:intron |
| GCTTGAACTGAATCTTATAG+AGG | 0.497228 | 2_4:-15885532 | None:intergenic |
| TAGGTCGGTGTATTGTATAA+TGG | 0.502343 | 2_4:+15885745 | Msa0317830:exon |
| ATTCATAATTAGAAATTCTA+GGG | 0.503168 | 2_4:-15888610 | None:intergenic |
| GCTTAGGTACCTATTGGAGA+TGG | 0.503427 | 2_4:+15889555 | Msa0317830:intron |
| TACTAGGTGGATGTAAAACT+TGG | 0.505836 | 2_4:+15888573 | Msa0317830:intron |
| TTAACTTGGTGTTTCATCAT+GGG | 0.511784 | 2_4:+15885795 | Msa0317830:CDS |
| ATGGATAACATTACAGGTGC+AGG | 0.512931 | 2_4:+15889885 | Msa0317830:three_prime_UTR |
| GACAAATAGTAGCATTAACT+TGG | 0.515595 | 2_4:+15885781 | Msa0317830:CDS |
| TTAATTTGAATTATGCAACT+TGG | 0.516265 | 2_4:+15885870 | Msa0317830:CDS |
| TATAAAGCTACAAAAGGGTA+AGG | 0.520044 | 2_4:-15885554 | None:intergenic |
| ATAAGTATAACTACCCTGAA+TGG | 0.522769 | 2_4:-15889647 | None:intergenic |
| CAAATGTTGTGAGAATCAAA+TGG | 0.526988 | 2_4:+15889799 | Msa0317830:three_prime_UTR |
| GCAGAACGGTGTATTGAAGT+TGG | 0.528745 | 2_4:+15887712 | Msa0317830:CDS |
| CACATCTGAATCTATTTCCC+AGG | 0.533699 | 2_4:-15889948 | None:intergenic |
| TATAATGAGAATGTTTCCAT+TGG | 0.535762 | 2_4:+15889862 | Msa0317830:three_prime_UTR |
| TCTTTGGCTGACCTTGCGGA+AGG | 0.543119 | 2_4:+15889736 | Msa0317830:three_prime_UTR |
| GTAAAGCTCAAAGATTGAAA+GGG | 0.544679 | 2_4:+15885909 | Msa0317830:CDS |
| GCAATTTCACAAACACTTGG+TGG | 0.544952 | 2_4:-15885659 | None:intergenic |
| GTGCTGTTGCAGGTGAGGAT+TGG | 0.549400 | 2_4:+15889229 | Msa0317830:intron |
| CTGTAATGTTATCCATCCAA+TGG | 0.549558 | 2_4:-15889878 | None:intergenic |
| TATGCATGGAAGCCAGATGC+AGG | 0.552563 | 2_4:+15886255 | Msa0317830:CDS |
| CTTGAACTGAATCTTATAGA+GGG | 0.557625 | 2_4:-15885531 | None:intergenic |
| AGATCTGGCATCTCTTTCAC+AGG | 0.558087 | 2_4:-15888374 | None:intergenic |
| ATTGATAATGTCCTTTGGCA+TGG | 0.562307 | 2_4:+15889265 | Msa0317830:CDS |
| TGGAAAAGTTGCTGATCCAT+TGG | 0.563254 | 2_4:+15889285 | Msa0317830:CDS |
| CTTAGGTACCTATTGGAGAT+GGG | 0.563487 | 2_4:+15889556 | Msa0317830:intron |
| TGAAAAGTATGGCAATAAGC+AGG | 0.568686 | 2_4:+15885985 | Msa0317830:CDS |
| GCAAGGTCAGCCAAAGAGAC+CGG | 0.570499 | 2_4:-15889730 | None:intergenic |
| AGCAATAACGACCTCACCGA+TGG | 0.573827 | 2_4:-15885957 | None:intergenic |
| AATTTGAATTATGCAACTTG+GGG | 0.573910 | 2_4:+15885872 | Msa0317830:CDS |
| CAATTTCACAAACACTTGGT+GGG | 0.576133 | 2_4:-15885658 | None:intergenic |
| GGTCTCTTTGGCTGACCTTG+CGG | 0.576531 | 2_4:+15889732 | Msa0317830:three_prime_UTR |
| TTGAACTGAATCTTATAGAG+GGG | 0.577803 | 2_4:-15885530 | None:intergenic |
| TCTAAAATTGAAATGATGAT+GGG | 0.579002 | 2_4:+15885490 | Msa0317830:five_prime_UTR |
| TGCAGATTCTTGGAGCAGAA+CGG | 0.585514 | 2_4:+15887698 | Msa0317830:CDS |
| TTATGAATGGTGAAGCTGGA+AGG | 0.590746 | 2_4:+15888625 | Msa0317830:CDS |
| AAAATTGAAATGATGATGGG+TGG | 0.595679 | 2_4:+15885493 | Msa0317830:five_prime_UTR |
| ATAGATTCAGATGTGTAGAT+GGG | 0.598351 | 2_4:+15889956 | Msa0317830:three_prime_UTR |
| CTATGTATAAAGCTACAAAA+GGG | 0.600901 | 2_4:-15885559 | None:intergenic |
| CTTGTAAGAAACAGTTCCAT+CGG | 0.605174 | 2_4:+15885941 | Msa0317830:CDS |
| AAGGCAATTTCACAAACACT+TGG | 0.606245 | 2_4:-15885662 | None:intergenic |
| CTGAATCTATTTCCCAGGCT+AGG | 0.613420 | 2_4:-15889943 | None:intergenic |
| GAGTTACGTGGAAGATAGGT+CGG | 0.615102 | 2_4:+15885730 | Msa0317830:five_prime_UTR |
| GCGGAGACTGCATCTATGCA+TGG | 0.626495 | 2_4:+15886241 | Msa0317830:CDS |
| CGAAAATGTTCGGGAACCAG+AGG | 0.628168 | 2_4:+15886045 | Msa0317830:CDS |
| TTCAAATTAAATCTTGCACA+AGG | 0.634077 | 2_4:-15885857 | None:intergenic |
| GATTCTAAGGCAGTTACGAG+CGG | 0.637191 | 2_4:+15886222 | Msa0317830:intron |
| AGTTCTCAGGTCCTTCCGCA+AGG | 0.637239 | 2_4:-15889747 | None:intergenic |
| AGTGAAGATACATGTTCATG+AGG | 0.637993 | 2_4:-15885827 | None:intergenic |
| GAGATGGGATGACAATCTGT+CGG | 0.642936 | 2_4:+15889571 | Msa0317830:CDS |
| TGAACTGAATCTTATAGAGG+GGG | 0.657995 | 2_4:-15885529 | None:intergenic |
| AGGTTGTTAGTCTTACGCCC+CGG | 0.659105 | 2_4:+15886005 | Msa0317830:CDS |
| CTAAACGACCTGATTCTGGA+AGG | 0.659892 | 2_4:-15888348 | None:intergenic |
| AGGAAAATAAGAGAGTTACG+TGG | 0.697686 | 2_4:+15885718 | Msa0317830:five_prime_UTR |
| AAGAAACAGTTCCATCGGTG+AGG | 0.701250 | 2_4:+15885946 | Msa0317830:CDS |
| GAGAACATAATCATACAACC+GGG | 0.710659 | 2_4:-15886023 | None:intergenic |
| AGAACATAATCATACAACCG+GGG | 0.758190 | 2_4:-15886022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTATTATTATTTTT+TGG | - | chr2_4:15887293-15887312 | None:intergenic | 0.0% |
| !! | AACAAAAATAAAGATAAAAA+AGG | - | chr2_4:15885606-15885625 | None:intergenic | 10.0% |
| !!! | TATATAGACTATTTTTATAT+TGG | + | chr2_4:15888510-15888529 | Msa0317830:intron | 10.0% |
| !! | TATTGTATAATGGTAATTAT+AGG | + | chr2_4:15885755-15885774 | Msa0317830:exon | 15.0% |
| !! | AAATACAATAAATCAGTAAT+GGG | - | chr2_4:15886089-15886108 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAATTGTGAAATT+TGG | + | chr2_4:15887495-15887514 | Msa0317830:intron | 15.0% |
| !! | TAAATTGTCTTAATCTTAAT+AGG | + | chr2_4:15887859-15887878 | Msa0317830:intron | 15.0% |
| !! | AAATTGTCTTAATCTTAATA+GGG | + | chr2_4:15887860-15887879 | Msa0317830:intron | 15.0% |
| !! | AAATCTTTCTATATTATCAT+AGG | - | chr2_4:15888085-15888104 | None:intergenic | 15.0% |
| !! | ATTCATAATTAGAAATTCTA+GGG | - | chr2_4:15888613-15888632 | None:intergenic | 15.0% |
| !! | GTATTAGTAATTAGAAAAAA+TGG | - | chr2_4:15889471-15889490 | None:intergenic | 15.0% |
| !!! | TCTAAAATTGAAATGATGAT+GGG | + | chr2_4:15885490-15885509 | Msa0317830:five_prime_UTR | 20.0% |
| !!! | TTAATTTGAATTATGCAACT+TGG | + | chr2_4:15885870-15885889 | Msa0317830:CDS | 20.0% |
| !! | TAATTTGAATTATGCAACTT+GGG | + | chr2_4:15885871-15885890 | Msa0317830:CDS | 20.0% |
| !! | CAAATACAATAAATCAGTAA+TGG | - | chr2_4:15886090-15886109 | None:intergenic | 20.0% |
| !! | AATTTGCATAACAAAATGAT+GGG | - | chr2_4:15886286-15886305 | None:intergenic | 20.0% |
| !! | AAATTTGCATAACAAAATGA+TGG | - | chr2_4:15886287-15886306 | None:intergenic | 20.0% |
| !!! | GAAAATTTAACTTTTTGAGT+AGG | - | chr2_4:15886870-15886889 | None:intergenic | 20.0% |
| !!! | TTTGATTTTAGGATTTAAGT+CGG | + | chr2_4:15887450-15887469 | Msa0317830:intron | 20.0% |
| !!! | TTTTAAATTGTGAAATTTGG+CGG | + | chr2_4:15887498-15887517 | Msa0317830:intron | 20.0% |
| !! | TGATACATTGTCTTTATAAT+AGG | + | chr2_4:15887639-15887658 | Msa0317830:intron | 20.0% |
| !!! | TCCTTTATTTTTAACAGTAT+AGG | + | chr2_4:15887750-15887769 | Msa0317830:intron | 20.0% |
| !!! | ATTATATTGTTAATTTGACC+AGG | + | chr2_4:15888297-15888316 | Msa0317830:intron | 20.0% |
| !!! | TTATATTGTTAATTTGACCA+GGG | + | chr2_4:15888298-15888317 | Msa0317830:intron | 20.0% |
| !!! | AGTTTTAATGTAATGATACT+AGG | + | chr2_4:15888557-15888576 | Msa0317830:intron | 20.0% |
| !! | CATTCATAATTAGAAATTCT+AGG | - | chr2_4:15888614-15888633 | None:intergenic | 20.0% |
| !! | CTAGAATTTCTAATTATGAA+TGG | + | chr2_4:15888612-15888631 | Msa0317830:CDS | 20.0% |
| !! | TTTGGATAAACTACTTAATT+AGG | - | chr2_4:15888869-15888888 | None:intergenic | 20.0% |
| !!! | ATTTGATGTTTCTCTTTTTT+AGG | + | chr2_4:15888935-15888954 | Msa0317830:intron | 20.0% |
| !!! | TTTGATGTTTCTCTTTTTTA+GGG | + | chr2_4:15888936-15888955 | Msa0317830:intron | 20.0% |
| !!! | GCATTAGAAATTTTAATCAA+CGG | + | chr2_4:15889401-15889420 | Msa0317830:CDS | 20.0% |
| !!! | AAATTTTAATCAACGGTTAA+TGG | + | chr2_4:15889408-15889427 | Msa0317830:CDS | 20.0% |
| !!! | CTCTAAAATTGAAATGATGA+TGG | + | chr2_4:15885489-15885508 | Msa0317830:five_prime_UTR | 25.0% |
| ! | CTATGTATAAAGCTACAAAA+GGG | - | chr2_4:15885562-15885581 | None:intergenic | 25.0% |
| ! | TCTATGTATAAAGCTACAAA+AGG | - | chr2_4:15885563-15885582 | None:intergenic | 25.0% |
| ! | TTCAAATTAAATCTTGCACA+AGG | - | chr2_4:15885860-15885879 | None:intergenic | 25.0% |
| ! | AATTTGAATTATGCAACTTG+GGG | + | chr2_4:15885872-15885891 | Msa0317830:CDS | 25.0% |
| ! | ATTATGTTCTCGAAAATGTT+CGG | + | chr2_4:15886035-15886054 | Msa0317830:CDS | 25.0% |
| ! | CATAAGTATGTGATATCAAT+TGG | + | chr2_4:15886189-15886208 | Msa0317830:intron | 25.0% |
| ! | TTTGATTCATCTCAAACATA+AGG | - | chr2_4:15886722-15886741 | None:intergenic | 25.0% |
| !! | AGGTTTGTTCTAATGTTTAT+GGG | - | chr2_4:15886923-15886942 | None:intergenic | 25.0% |
| !! | TAGGTTTGTTCTAATGTTTA+TGG | - | chr2_4:15886924-15886943 | None:intergenic | 25.0% |
| ! | TTCTTTAAACTACCAAATGT+AGG | - | chr2_4:15886943-15886962 | None:intergenic | 25.0% |
| !! | ATTTGGTAGTTTAAAGAACA+AGG | + | chr2_4:15886945-15886964 | Msa0317830:intron | 25.0% |
| !! | TTTGGTAGTTTAAAGAACAA+GGG | + | chr2_4:15886946-15886965 | Msa0317830:intron | 25.0% |
| !!! | GCTAATTACCTTATTAGTTT+TGG | + | chr2_4:15887085-15887104 | Msa0317830:intron | 25.0% |
| !!! | TTGATTTTAGGATTTAAGTC+GGG | + | chr2_4:15887451-15887470 | Msa0317830:intron | 25.0% |
| !! | TCAACATTTTACTTCATAGA+AGG | - | chr2_4:15887619-15887638 | None:intergenic | 25.0% |
| ! | GCCTATACTGTTAAAAATAA+AGG | - | chr2_4:15887754-15887773 | None:intergenic | 25.0% |
| ! | TATGTAGAACAAGATCTAAT+TGG | - | chr2_4:15887808-15887827 | None:intergenic | 25.0% |
| ! | ATTAGATCTTGTTCTACATA+TGG | + | chr2_4:15887808-15887827 | Msa0317830:intron | 25.0% |
| !! | GTCTCTATAACCTTAATTTT+TGG | + | chr2_4:15887972-15887991 | Msa0317830:intron | 25.0% |
| ! | TGAGTTTCATCCAAAAATTA+AGG | - | chr2_4:15887985-15888004 | None:intergenic | 25.0% |
| ! | GTTTACTCTTTAGATTCAAA+TGG | - | chr2_4:15888061-15888080 | None:intergenic | 25.0% |
| ! | AACAATGATGTGCATATTAT+AGG | + | chr2_4:15888211-15888230 | Msa0317830:intron | 25.0% |
| ! | GATGTCAAGTTTAAAAATCT+TGG | - | chr2_4:15888255-15888274 | None:intergenic | 25.0% |
| ! | TATATTTCAAAGTGAAAGTG+TGG | - | chr2_4:15888494-15888513 | None:intergenic | 25.0% |
| ! | ATTAAAACTTCAGAGAATTC+AGG | - | chr2_4:15888546-15888565 | None:intergenic | 25.0% |
| ! | TTTAATGTAATGATACTAGG+TGG | + | chr2_4:15888560-15888579 | Msa0317830:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr2_4:15888744-15888763 | None:intergenic | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | + | chr2_4:15888870-15888889 | Msa0317830:intron | 25.0% |
| ! | TTAAGTAGTTTATCCAAACA+GGG | + | chr2_4:15888871-15888890 | Msa0317830:intron | 25.0% |
| ! | CATTTATTGATGCTGAAAAA+AGG | + | chr2_4:15889066-15889085 | Msa0317830:CDS | 25.0% |
| ! | TATTACAGATTGAACAATGT+TGG | - | chr2_4:15889148-15889167 | None:intergenic | 25.0% |
| !!! | TTGTAATTGATAATGTCCTT+TGG | + | chr2_4:15889260-15889279 | Msa0317830:CDS | 25.0% |
| !! | ATATGATATATCGTCTCTTT+TGG | + | chr2_4:15889530-15889549 | Msa0317830:intron | 25.0% |
| ! | TATAATGAGAATGTTTCCAT+TGG | + | chr2_4:15889862-15889881 | Msa0317830:three_prime_UTR | 25.0% |
| !! | AAAATTGAAATGATGATGGG+TGG | + | chr2_4:15885493-15885512 | Msa0317830:five_prime_UTR | 30.0% |
| TTGAACTGAATCTTATAGAG+GGG | - | chr2_4:15885533-15885552 | None:intergenic | 30.0% | |
| CTTGAACTGAATCTTATAGA+GGG | - | chr2_4:15885534-15885553 | None:intergenic | 30.0% | |
| TATAAAGCTACAAAAGGGTA+AGG | - | chr2_4:15885557-15885576 | None:intergenic | 30.0% | |
| TGTTGTATGTATATATCAGC+TGG | + | chr2_4:15885622-15885641 | Msa0317830:intron | 30.0% | |
| GACAAATAGTAGCATTAACT+TGG | + | chr2_4:15885781-15885800 | Msa0317830:CDS | 30.0% | |
| !! | ATTAACTTGGTGTTTCATCA+TGG | + | chr2_4:15885794-15885813 | Msa0317830:CDS | 30.0% |
| !! | TTAACTTGGTGTTTCATCAT+GGG | + | chr2_4:15885795-15885814 | Msa0317830:CDS | 30.0% |
| AGTAAAGCTCAAAGATTGAA+AGG | + | chr2_4:15885908-15885927 | Msa0317830:CDS | 30.0% | |
| GTAAAGCTCAAAGATTGAAA+GGG | + | chr2_4:15885909-15885928 | Msa0317830:CDS | 30.0% | |
| ATTGCTAGTGATGAAAAGTA+TGG | + | chr2_4:15885974-15885993 | Msa0317830:CDS | 30.0% | |
| TTATGTTCTCGAAAATGTTC+GGG | + | chr2_4:15886036-15886055 | Msa0317830:CDS | 30.0% | |
| TGGTTGTATTTCAGATTCTA+AGG | + | chr2_4:15886209-15886228 | Msa0317830:intron | 30.0% | |
| TGTACAAACGTCAAACAATT+TGG | - | chr2_4:15886332-15886351 | None:intergenic | 30.0% | |
| ! | ATTCAAAACTACTAGTTTCC+TGG | - | chr2_4:15886515-15886534 | None:intergenic | 30.0% |
| !!! | AACTAGTAGTTTTGAATCAG+TGG | + | chr2_4:15886518-15886537 | Msa0317830:intron | 30.0% |
| TCTGCATATTCATAGTTACA+AGG | - | chr2_4:15886568-15886587 | None:intergenic | 30.0% | |
| TTATGAGATAGAAGCTTTCA+AGG | - | chr2_4:15886598-15886617 | None:intergenic | 30.0% | |
| CTGTTGCTCAATTATAAGAT+AGG | - | chr2_4:15886687-15886706 | None:intergenic | 30.0% | |
| TCATCTCAAACATAAGGATA+GGG | - | chr2_4:15886716-15886735 | None:intergenic | 30.0% | |
| TTCATCTCAAACATAAGGAT+AGG | - | chr2_4:15886717-15886736 | None:intergenic | 30.0% | |
| ! | GGTTTGTTCTAATGTTTATG+GGG | - | chr2_4:15886922-15886941 | None:intergenic | 30.0% |
| CATTAGAACAAACCTACATT+TGG | + | chr2_4:15886928-15886947 | Msa0317830:intron | 30.0% | |
| ! | TTGGTAGTTTAAAGAACAAG+GGG | + | chr2_4:15886947-15886966 | Msa0317830:intron | 30.0% |
| GTAATTAGCAATCAAATACC+AGG | - | chr2_4:15886990-15887009 | None:intergenic | 30.0% | |
| GTACTGCAAAAAATGTATCT+TGG | - | chr2_4:15887047-15887066 | None:intergenic | 30.0% | |
| TAATTAGCAATCAAATACGC+GGG | - | chr2_4:15887073-15887092 | None:intergenic | 30.0% | |
| GTAATTAGCAATCAAATACG+CGG | - | chr2_4:15887074-15887093 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | + | chr2_4:15887196-15887215 | Msa0317830:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+TGG | + | chr2_4:15887209-15887228 | Msa0317830:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | + | chr2_4:15887231-15887250 | Msa0317830:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | + | chr2_4:15887196-15887215 | Msa0317830:intron | 30.0% | |
| !! | GTCGCAAAATCTTTGATTTT+AGG | + | chr2_4:15887439-15887458 | Msa0317830:intron | 30.0% |
| AATATGTATGTGATACCCTT+TGG | + | chr2_4:15888013-15888032 | Msa0317830:intron | 30.0% | |
| ATAACAAATGTGACTCCAAA+GGG | - | chr2_4:15888031-15888050 | None:intergenic | 30.0% | |
| TATAACAAATGTGACTCCAA+AGG | - | chr2_4:15888032-15888051 | None:intergenic | 30.0% | |
| TCTTTGCAGATTATGATGAA+CGG | + | chr2_4:15888132-15888151 | Msa0317830:intron | 30.0% | |
| TCTTTCTTTAGTAACTGATG+AGG | + | chr2_4:15888273-15888292 | Msa0317830:intron | 30.0% | |
| ! | GTTATGCTTTTGATCTCATA+AGG | + | chr2_4:15888450-15888469 | Msa0317830:intron | 30.0% |
| AGTGTGGAACTACAAATATT+TGG | - | chr2_4:15888478-15888497 | None:intergenic | 30.0% | |
| TCAAATAAGCTAGTTGAAAC+AGG | - | chr2_4:15888678-15888697 | None:intergenic | 30.0% | |
| !! | CTTATTTTCGTAAGCTATCT+AGG | + | chr2_4:15888758-15888777 | Msa0317830:intron | 30.0% |
| AAAGTCATAGCTGCATAAAA+AGG | - | chr2_4:15889045-15889064 | None:intergenic | 30.0% | |
| !! | TTTTGGGAAACATAGTTAGA+AGG | - | chr2_4:15889183-15889202 | None:intergenic | 30.0% |
| ! | GAACTGGTATAACAACTTTT+GGG | - | chr2_4:15889199-15889218 | None:intergenic | 30.0% |
| ! | TGAACTGGTATAACAACTTT+TGG | - | chr2_4:15889200-15889219 | None:intergenic | 30.0% |
| ! | TCGTATTTGTTCGTTATTTC+CGG | + | chr2_4:15889321-15889340 | Msa0317830:intron | 30.0% |
| AATACACTTCCAATACACTT+AGG | + | chr2_4:15889486-15889505 | Msa0317830:intron | 30.0% | |
| ATACACTTCCAATACACTTA+GGG | + | chr2_4:15889487-15889506 | Msa0317830:intron | 30.0% | |
| ATAAGTATAACTACCCTGAA+TGG | - | chr2_4:15889650-15889669 | None:intergenic | 30.0% | |
| TCTTAGAACTTGAGATTTAC+CGG | + | chr2_4:15889711-15889730 | Msa0317830:three_prime_UTR | 30.0% | |
| TTTGATTCTCACAACATTTG+TGG | - | chr2_4:15889799-15889818 | None:intergenic | 30.0% | |
| CAAATGTTGTGAGAATCAAA+TGG | + | chr2_4:15889799-15889818 | Msa0317830:three_prime_UTR | 30.0% | |
| AATAGATTCAGATGTGTAGA+TGG | + | chr2_4:15889955-15889974 | Msa0317830:three_prime_UTR | 30.0% | |
| TGAACTGAATCTTATAGAGG+GGG | - | chr2_4:15885532-15885551 | None:intergenic | 35.0% | |
| GCTTGAACTGAATCTTATAG+AGG | - | chr2_4:15885535-15885554 | None:intergenic | 35.0% | |
| CAATTTCACAAACACTTGGT+GGG | - | chr2_4:15885661-15885680 | None:intergenic | 35.0% | |
| AAGGCAATTTCACAAACACT+TGG | - | chr2_4:15885665-15885684 | None:intergenic | 35.0% | |
| AAATTGCCTTGCAGAGAAAT+TGG | + | chr2_4:15885675-15885694 | Msa0317830:five_prime_UTR | 35.0% | |
| TTGCAGAGAAATTGGCAAAA+GGG | + | chr2_4:15885683-15885702 | Msa0317830:five_prime_UTR | 35.0% | |
| !! | CAAAAGGGCTTTTGAGAATA+AGG | + | chr2_4:15885698-15885717 | Msa0317830:five_prime_UTR | 35.0% |
| AGGAAAATAAGAGAGTTACG+TGG | + | chr2_4:15885718-15885737 | Msa0317830:five_prime_UTR | 35.0% | |
| TAGGTCGGTGTATTGTATAA+TGG | + | chr2_4:15885745-15885764 | Msa0317830:exon | 35.0% | |
| AGTGAAGATACATGTTCATG+AGG | - | chr2_4:15885830-15885849 | None:intergenic | 35.0% | |
| TCTTTGAGCTTTACTAGTAC+TGG | - | chr2_4:15885903-15885922 | None:intergenic | 35.0% | |
| CTTGTAAGAAACAGTTCCAT+CGG | + | chr2_4:15885941-15885960 | Msa0317830:CDS | 35.0% | |
| ! | TGAAAAGTATGGCAATAAGC+AGG | + | chr2_4:15885985-15886004 | Msa0317830:CDS | 35.0% |
| AGAACATAATCATACAACCG+GGG | - | chr2_4:15886025-15886044 | None:intergenic | 35.0% | |
| GAGAACATAATCATACAACC+GGG | - | chr2_4:15886026-15886045 | None:intergenic | 35.0% | |
| CGAGAACATAATCATACAAC+CGG | - | chr2_4:15886027-15886046 | None:intergenic | 35.0% | |
| TTTGCAAGATTCTGATTCCA+TGG | + | chr2_4:15886133-15886152 | Msa0317830:intron | 35.0% | |
| CTTATGCTCGAAAAACACAA+GGG | - | chr2_4:15886175-15886194 | None:intergenic | 35.0% | |
| ACTTATGCTCGAAAAACACA+AGG | - | chr2_4:15886176-15886195 | None:intergenic | 35.0% | |
| TATTCACACAGTTCACTCAT+TGG | + | chr2_4:15886306-15886325 | Msa0317830:intron | 35.0% | |
| CATGAAAATCTATACTGACC+AGG | + | chr2_4:15886494-15886513 | Msa0317830:intron | 35.0% | |
| !!! | TAGTTTTGAATCAGTGGAGT+TGG | + | chr2_4:15886524-15886543 | Msa0317830:intron | 35.0% |
| !!! | GGAGTTGGTTTTGAACATAT+TGG | + | chr2_4:15886539-15886558 | Msa0317830:intron | 35.0% |
| GGATATGATTGGATAAGAGT+AGG | + | chr2_4:15886633-15886652 | Msa0317830:intron | 35.0% | |
| TGATTGGATAAGAGTAGGAT+AGG | + | chr2_4:15886638-15886657 | Msa0317830:intron | 35.0% | |
| GATTGGATAAGAGTAGGATA+GGG | + | chr2_4:15886639-15886658 | Msa0317830:intron | 35.0% | |
| GACAGACACCAAAACTAATA+AGG | - | chr2_4:15887096-15887115 | None:intergenic | 35.0% | |
| TCAATATCTTGTCCATGCTA+TGG | + | chr2_4:15887116-15887135 | Msa0317830:intron | 35.0% | |
| CATGCTATGGTTGTCAAAAT+CGG | + | chr2_4:15887129-15887148 | Msa0317830:intron | 35.0% | |
| ATGCTATGGTTGTCAAAATC+GGG | + | chr2_4:15887130-15887149 | Msa0317830:intron | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | + | chr2_4:15887166-15887185 | Msa0317830:intron | 35.0% | |
| CTGTAAACTCGCAATCAAAA+TGG | + | chr2_4:15887257-15887276 | Msa0317830:intron | 35.0% | |
| AAACTCGCAATCAAAATGGA+TGG | + | chr2_4:15887261-15887280 | Msa0317830:intron | 35.0% | |
| !! | TCGATGGATTTTGCTTAGTT+TGG | + | chr2_4:15887378-15887397 | Msa0317830:intron | 35.0% |
| !! | CGATGGATTTTGCTTAGTTT+GGG | + | chr2_4:15887379-15887398 | Msa0317830:intron | 35.0% |
| ! | CTTAGTTTGGGATTCTACTA+TGG | + | chr2_4:15887391-15887410 | Msa0317830:intron | 35.0% |
| CTATGGATTTAAGTCGTTGA+AGG | + | chr2_4:15887408-15887427 | Msa0317830:intron | 35.0% | |
| TTACTTCATAGAAGGCAAGT+GGG | - | chr2_4:15887611-15887630 | None:intergenic | 35.0% | |
| TTTACTTCATAGAAGGCAAG+TGG | - | chr2_4:15887612-15887631 | None:intergenic | 35.0% | |
| ATAGTTATTCAATGCCGTGT+GGG | - | chr2_4:15887926-15887945 | None:intergenic | 35.0% | |
| ! | TCTGAAGAGTACACAAATGA+AGG | - | chr2_4:15887952-15887971 | None:intergenic | 35.0% |
| !! | AAGAAGTATTATCAGCTTGC+TGG | + | chr2_4:15888409-15888428 | Msa0317830:CDS | 35.0% |
| TACTAGGTGGATGTAAAACT+TGG | + | chr2_4:15888573-15888592 | Msa0317830:intron | 35.0% | |
| CTAATTATGAATGGTGAAGC+TGG | + | chr2_4:15888621-15888640 | Msa0317830:CDS | 35.0% | |
| !! | ATTGATAATGTCCTTTGGCA+TGG | + | chr2_4:15889265-15889284 | Msa0317830:CDS | 35.0% |
| CTGATCCATTGGTGAATAAA+TGG | + | chr2_4:15889296-15889315 | Msa0317830:intron | 35.0% | |
| AGAAGTCAAGGTCATTTAAC+CGG | - | chr2_4:15889343-15889362 | None:intergenic | 35.0% | |
| ACATGGTACATTAGAAGTCA+AGG | - | chr2_4:15889355-15889374 | None:intergenic | 35.0% | |
| ! | TGATATATCGTCTCTTTTGG+TGG | + | chr2_4:15889533-15889552 | Msa0317830:intron | 35.0% |
| TCATTGCAATTGAACCATTC+AGG | + | chr2_4:15889633-15889652 | Msa0317830:three_prime_UTR | 35.0% | |
| CATTGCAATTGAACCATTCA+GGG | + | chr2_4:15889634-15889653 | Msa0317830:three_prime_UTR | 35.0% | |
| TTCTTCATTATGCAGTTCTC+AGG | - | chr2_4:15889763-15889782 | None:intergenic | 35.0% | |
| ATGAGAATGTTTCCATTGGA+TGG | + | chr2_4:15889866-15889885 | Msa0317830:three_prime_UTR | 35.0% | |
| CTGTAATGTTATCCATCCAA+TGG | - | chr2_4:15889881-15889900 | None:intergenic | 35.0% | |
| CATTGGATGGATAACATTAC+AGG | + | chr2_4:15889879-15889898 | Msa0317830:three_prime_UTR | 35.0% | |
| GCAATTTCACAAACACTTGG+TGG | - | chr2_4:15885662-15885681 | None:intergenic | 40.0% | |
| ! | CTTTTGCCAATTTCTCTGCA+AGG | - | chr2_4:15885684-15885703 | None:intergenic | 40.0% |
| CTTGCAGAGAAATTGGCAAA+AGG | + | chr2_4:15885682-15885701 | Msa0317830:five_prime_UTR | 40.0% | |
| AAGAGAGTTACGTGGAAGAT+AGG | + | chr2_4:15885726-15885745 | Msa0317830:five_prime_UTR | 40.0% | |
| GCAGTCATATATTCAAGCCA+TGG | - | chr2_4:15886153-15886172 | None:intergenic | 40.0% | |
| TATGTCTTCGCTATGCAAGT+TGG | + | chr2_4:15886353-15886372 | Msa0317830:intron | 40.0% | |
| ATGTCTTCGCTATGCAAGTT+GGG | + | chr2_4:15886354-15886373 | Msa0317830:intron | 40.0% | |
| CTTCTATCTCATAAAGTCCC+CGG | + | chr2_4:15886604-15886623 | Msa0317830:intron | 40.0% | |
| TCCAATCATATCCACCAAAC+CGG | - | chr2_4:15886626-15886645 | None:intergenic | 40.0% | |
| TTTAAAGAACAAGGGGCTTC+AGG | + | chr2_4:15886954-15886973 | Msa0317830:intron | 40.0% | |
| !! | CGATTTTGACAACCATAGCA+TGG | - | chr2_4:15887131-15887150 | None:intergenic | 40.0% |
| CAAAATCGGGACTTTACTTC+AGG | + | chr2_4:15887143-15887162 | Msa0317830:intron | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | + | chr2_4:15887152-15887171 | Msa0317830:intron | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | + | chr2_4:15887167-15887186 | Msa0317830:intron | 40.0% | |
| ATAATAGGTGTCTCCTGATC+AGG | + | chr2_4:15887654-15887673 | Msa0317830:intron | 40.0% | |
| AGACATTCATGTAACCCACA+CGG | + | chr2_4:15887909-15887928 | Msa0317830:intron | 40.0% | |
| CATAGTTATTCAATGCCGTG+TGG | - | chr2_4:15887927-15887946 | None:intergenic | 40.0% | |
| CTTAGCAACATCAAGAGATC+TGG | - | chr2_4:15888392-15888411 | None:intergenic | 40.0% | |
| TTATGAATGGTGAAGCTGGA+AGG | + | chr2_4:15888625-15888644 | Msa0317830:CDS | 40.0% | |
| TAAGCTAGTTGAAACAGGCA+CGG | - | chr2_4:15888673-15888692 | None:intergenic | 40.0% | |
| TTGTCCTCATTAGACTGTAG+TGG | + | chr2_4:15888896-15888915 | Msa0317830:intron | 40.0% | |
| CTCATTAGACTGTAGTGGTT+GGG | + | chr2_4:15888901-15888920 | Msa0317830:intron | 40.0% | |
| !!! | TTTTGAGATGCTACTGCAAC+TGG | + | chr2_4:15889103-15889122 | Msa0317830:CDS | 40.0% |
| TGGAAAAGTTGCTGATCCAT+TGG | + | chr2_4:15889285-15889304 | Msa0317830:CDS | 40.0% | |
| CGAAGCCATTTATTCACCAA+TGG | - | chr2_4:15889304-15889323 | None:intergenic | 40.0% | |
| ACTTCTAATGTACCATGTGC+AGG | + | chr2_4:15889357-15889376 | Msa0317830:intron | 40.0% | |
| TAAGCGTGTAAGCATCAGTA+TGG | + | chr2_4:15889435-15889454 | Msa0317830:CDS | 40.0% | |
| GAATCTCTCCCTAAGTGTAT+TGG | - | chr2_4:15889498-15889517 | None:intergenic | 40.0% | |
| CTTAGGTACCTATTGGAGAT+GGG | + | chr2_4:15889556-15889575 | Msa0317830:intron | 40.0% | |
| ATTGTCATCCCATCTCCAAT+AGG | - | chr2_4:15889567-15889586 | None:intergenic | 40.0% | |
| TTGAGATTTACCGGTCTCTT+TGG | + | chr2_4:15889720-15889739 | Msa0317830:three_prime_UTR | 40.0% | |
| ATGGATAACATTACAGGTGC+AGG | + | chr2_4:15889885-15889904 | Msa0317830:three_prime_UTR | 40.0% | |
| !! | TTTTTCTAAGAGCCTAGCCT+GGG | + | chr2_4:15889931-15889950 | Msa0317830:three_prime_UTR | 40.0% |
| CACATCTGAATCTATTTCCC+AGG | - | chr2_4:15889951-15889970 | None:intergenic | 40.0% | |
| GAGTTACGTGGAAGATAGGT+CGG | + | chr2_4:15885730-15885749 | Msa0317830:five_prime_UTR | 45.0% | |
| AAGAAACAGTTCCATCGGTG+AGG | + | chr2_4:15885946-15885965 | Msa0317830:CDS | 45.0% | |
| !! | GATTCTAAGGCAGTTACGAG+CGG | + | chr2_4:15886222-15886241 | Msa0317830:intron | 45.0% |
| TGTCTTCGCTATGCAAGTTG+GGG | + | chr2_4:15886355-15886374 | Msa0317830:intron | 45.0% | |
| ! | TGGGGTTTCTACTGCACTTT+TGG | + | chr2_4:15886373-15886392 | Msa0317830:intron | 45.0% |
| ATCTCATAAAGTCCCCGGTT+TGG | + | chr2_4:15886609-15886628 | Msa0317830:intron | 45.0% | |
| CAATCATATCCACCAAACCG+GGG | - | chr2_4:15886624-15886643 | None:intergenic | 45.0% | |
| CCAATCATATCCACCAAACC+GGG | - | chr2_4:15886625-15886644 | None:intergenic | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | + | chr2_4:15887151-15887170 | Msa0317830:intron | 45.0% | |
| GCAATGCTTGTGCAGATTCT+TGG | + | chr2_4:15887688-15887707 | Msa0317830:CDS | 45.0% | |
| TGCAGATTCTTGGAGCAGAA+CGG | + | chr2_4:15887698-15887717 | Msa0317830:CDS | 45.0% | |
| GCAGAACGGTGTATTGAAGT+TGG | + | chr2_4:15887712-15887731 | Msa0317830:CDS | 45.0% | |
| AATGCACCACATCAGTTGTG+CGG | + | chr2_4:15888170-15888189 | Msa0317830:intron | 45.0% | |
| ATAGATCCGCACAACTGATG+TGG | - | chr2_4:15888179-15888198 | None:intergenic | 45.0% | |
| GCATTAGTCCTTCCAGAATC+AGG | + | chr2_4:15888340-15888359 | Msa0317830:CDS | 45.0% | |
| CTAAACGACCTGATTCTGGA+AGG | - | chr2_4:15888351-15888370 | None:intergenic | 45.0% | |
| GCAACTAAACGACCTGATTC+TGG | - | chr2_4:15888355-15888374 | None:intergenic | 45.0% | |
| AGATCTGGCATCTCTTTCAC+AGG | - | chr2_4:15888377-15888396 | None:intergenic | 45.0% | |
| ! | GCTTGCTGGTGTTTCACATA+AGG | + | chr2_4:15888423-15888442 | Msa0317830:CDS | 45.0% |
| CCAACCACTACAGTCTAATG+AGG | - | chr2_4:15888903-15888922 | None:intergenic | 45.0% | |
| CCTCATTAGACTGTAGTGGT+TGG | + | chr2_4:15888900-15888919 | Msa0317830:intron | 45.0% | |
| CAGCACTTCATTCAGTGAAC+TGG | - | chr2_4:15889215-15889234 | None:intergenic | 45.0% | |
| !! | ACTGAATGAAGTGCTGTTGC+AGG | + | chr2_4:15889219-15889238 | Msa0317830:intron | 45.0% |
| ! | CAGCAACTTTTCCATGCCAA+AGG | - | chr2_4:15889279-15889298 | None:intergenic | 45.0% |
| !! | TAGTGTCACTTACCTGCACA+TGG | - | chr2_4:15889372-15889391 | None:intergenic | 45.0% |
| ACACTTAGGGAGAGATTCTC+AGG | + | chr2_4:15889500-15889519 | Msa0317830:intron | 45.0% | |
| !! | ATCGTCTCTTTTGGTGGCTT+AGG | + | chr2_4:15889539-15889558 | Msa0317830:intron | 45.0% |
| ! | TTGGTGGCTTAGGTACCTAT+TGG | + | chr2_4:15889549-15889568 | Msa0317830:intron | 45.0% |
| GCTTAGGTACCTATTGGAGA+TGG | + | chr2_4:15889555-15889574 | Msa0317830:intron | 45.0% | |
| GAGATGGGATGACAATCTGT+CGG | + | chr2_4:15889571-15889590 | Msa0317830:CDS | 45.0% | |
| !! | GTTTTTCTAAGAGCCTAGCC+TGG | + | chr2_4:15889930-15889949 | Msa0317830:three_prime_UTR | 45.0% |
| CTGAATCTATTTCCCAGGCT+AGG | - | chr2_4:15889946-15889965 | None:intergenic | 45.0% | |
| !! | AATAATAAATATGTTATAAA+TGG | + | chr2_4:15887302-15887321 | Msa0317830:intron | 5.0% |
| ! | CACAAACACTTGGTGGGCAA+TGG | - | chr2_4:15885655-15885674 | None:intergenic | 50.0% |
| AGCAATAACGACCTCACCGA+TGG | - | chr2_4:15885960-15885979 | None:intergenic | 50.0% | |
| !! | AGGTTGTTAGTCTTACGCCC+CGG | + | chr2_4:15886005-15886024 | Msa0317830:CDS | 50.0% |
| CGAAAATGTTCGGGAACCAG+AGG | + | chr2_4:15886045-15886064 | Msa0317830:CDS | 50.0% | |
| TCTTCGTCAATCCTCACCTC+TGG | - | chr2_4:15886064-15886083 | None:intergenic | 50.0% | |
| TATGCATGGAAGCCAGATGC+AGG | + | chr2_4:15886255-15886274 | Msa0317830:CDS | 50.0% | |
| TGATGGGAGATACCTGCATC+TGG | - | chr2_4:15886270-15886289 | None:intergenic | 50.0% | |
| !! | TCATAAAGTCCCCGGTTTGG+TGG | + | chr2_4:15886612-15886631 | Msa0317830:intron | 50.0% |
| !! | CCCGGTTTGGTGGATATGAT+TGG | + | chr2_4:15886622-15886641 | Msa0317830:intron | 50.0% |
| TCCTGATCAGGCACAACTAC+TGG | + | chr2_4:15887666-15887685 | Msa0317830:CDS | 50.0% | |
| AATGAGGACAACGCCCTGTT+TGG | - | chr2_4:15888887-15888906 | None:intergenic | 50.0% | |
| !! | ATGAAGTGCTGTTGCAGGTG+AGG | + | chr2_4:15889224-15889243 | Msa0317830:intron | 50.0% |
| ! | CACTTGGTGGGCAATGGACT+TGG | - | chr2_4:15885649-15885668 | None:intergenic | 55.0% |
| ATGTTCGGGAACCAGAGGTG+AGG | + | chr2_4:15886050-15886069 | Msa0317830:intron | 55.0% | |
| GCGGAGACTGCATCTATGCA+TGG | + | chr2_4:15886241-15886260 | Msa0317830:CDS | 55.0% | |
| AACAAGGGGCTTCAGGTGTC+TGG | + | chr2_4:15886961-15886980 | Msa0317830:intron | 55.0% | |
| GCTTCAGGTGTCTGGTATCC+TGG | + | chr2_4:15886969-15886988 | Msa0317830:intron | 55.0% | |
| GCCAGTAGTTGTGCCTGATC+AGG | - | chr2_4:15887670-15887689 | None:intergenic | 55.0% | |
| TCGCTAGTGATGAGTAGCCC+TGG | - | chr2_4:15888318-15888337 | None:intergenic | 55.0% | |
| ! | GTGCTGTTGCAGGTGAGGAT+TGG | + | chr2_4:15889229-15889248 | Msa0317830:intron | 55.0% |
| CTGTTGCAGGTGAGGATTGG+AGG | + | chr2_4:15889232-15889251 | Msa0317830:intron | 55.0% | |
| GCAAGGTCAGCCAAAGAGAC+CGG | - | chr2_4:15889733-15889752 | None:intergenic | 55.0% | |
| GGTCTCTTTGGCTGACCTTG+CGG | + | chr2_4:15889732-15889751 | Msa0317830:three_prime_UTR | 55.0% | |
| TCTTTGGCTGACCTTGCGGA+AGG | + | chr2_4:15889736-15889755 | Msa0317830:three_prime_UTR | 55.0% | |
| AGTTCTCAGGTCCTTCCGCA+AGG | - | chr2_4:15889750-15889769 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 15885482 | 15889978 | 15885482 | ID=Msa0317830;Name=Msa0317830 |
| chr2_4 | mRNA | 15885482 | 15889978 | 15885482 | ID=Msa0317830-mRNA-1;Parent=Msa0317830;Name=Msa0317830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=220|1|1|1|0.88|0.8|10|376|296 |
| chr2_4 | exon | 15885482 | 15885593 | 15885482 | ID=Msa0317830-mRNA-1:exon:5993;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15885656 | 15886066 | 15885656 | ID=Msa0317830-mRNA-1:exon:5994;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15886223 | 15886276 | 15886223 | ID=Msa0317830-mRNA-1:exon:5995;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15887661 | 15887744 | 15887661 | ID=Msa0317830-mRNA-1:exon:5996;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15888319 | 15888444 | 15888319 | ID=Msa0317830-mRNA-1:exon:5997;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15888579 | 15888646 | 15888579 | ID=Msa0317830-mRNA-1:exon:5998;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15889055 | 15889124 | 15889055 | ID=Msa0317830-mRNA-1:exon:5999;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15889241 | 15889306 | 15889241 | ID=Msa0317830-mRNA-1:exon:6000;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15889379 | 15889456 | 15889379 | ID=Msa0317830-mRNA-1:exon:6001;Parent=Msa0317830-mRNA-1 |
| chr2_4 | exon | 15889561 | 15889978 | 15889561 | ID=Msa0317830-mRNA-1:exon:6002;Parent=Msa0317830-mRNA-1 |
| chr2_4 | five_prime_UTR | 15885482 | 15885593 | 15885482 | ID=Msa0317830-mRNA-1:five_prime_utr;Parent=Msa0317830-mRNA-1 |
| chr2_4 | five_prime_UTR | 15885656 | 15885763 | 15885656 | ID=Msa0317830-mRNA-1:five_prime_utr;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15885764 | 15886066 | 15885764 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15886223 | 15886276 | 15886223 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15887661 | 15887744 | 15887661 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15888319 | 15888444 | 15888319 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15888579 | 15888646 | 15888579 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15889055 | 15889124 | 15889055 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15889241 | 15889306 | 15889241 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15889379 | 15889456 | 15889379 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | CDS | 15889561 | 15889602 | 15889561 | ID=Msa0317830-mRNA-1:cds;Parent=Msa0317830-mRNA-1 |
| chr2_4 | three_prime_UTR | 15889603 | 15889978 | 15889603 | ID=Msa0317830-mRNA-1:three_prime_utr;Parent=Msa0317830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
