Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213690 | XP_013448643.1 | 65.724 | 283 | 41 | 5 | 23 | 254 | 11 | 288 | 8.49e-115 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213690 | sp|Q6NLW5|XRI1_ARATH | 35.918 | 245 | 102 | 8 | 26 | 220 | 12 | 251 | 1.38e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213690 | A0A072U9Z7 | 65.724 | 283 | 41 | 5 | 23 | 254 | 11 | 288 | 4.06e-115 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213690 | Msa1101660 | 0.848180 | 7.225342e-60 | -8.615850e-47 |
| Msa0213690 | Msa1253510 | 0.882220 | 1.250116e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213690 | MtrunA17_Chr7g0236031 | 65.724 | 283 | 41 | 5 | 23 | 254 | 11 | 288 | 7.81e-119 | 342 |
| Msa0213690 | MtrunA17_Chr8g0340041 | 44.758 | 248 | 84 | 7 | 23 | 220 | 8 | 252 | 2.37e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213690 | AT5G48720.2 | 35.918 | 245 | 102 | 8 | 26 | 220 | 12 | 251 | 1.40e-31 | 118 |
| Msa0213690 | AT5G48720.4 | 35.918 | 245 | 102 | 8 | 26 | 220 | 12 | 251 | 1.40e-31 | 118 |
| Msa0213690 | AT5G48720.1 | 36.620 | 213 | 83 | 5 | 56 | 220 | 9 | 217 | 1.76e-30 | 115 |
| Msa0213690 | AT5G48720.3 | 36.620 | 213 | 83 | 5 | 56 | 220 | 9 | 217 | 1.76e-30 | 115 |
Find 62 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAAAATTTGACGTCTTC+TGG | 0.204285 | 2_1:-56865815 | None:intergenic |
| CTCCAGAAGACGTCAAATTT+TGG | 0.204893 | 2_1:+56865813 | Msa0213690:CDS |
| GAAATAAATAAGCGCATTTA+TGG | 0.237911 | 2_1:+56868421 | Msa0213690:CDS |
| TTTAGAATCGTACGGATTAT+CGG | 0.334187 | 2_1:-56867424 | None:intergenic |
| GTGGTTCGCAGATTGCTTTA+AGG | 0.364219 | 2_1:+56867380 | Msa0213690:CDS |
| TTGTTAGGGCTCCTTGGAAT+TGG | 0.379300 | 2_1:+56865769 | Msa0213690:intron |
| ATAGGAAGGTCTTCAATTCC+AGG | 0.392770 | 2_1:-56865935 | None:intergenic |
| TCTATTATGAAAACACCAAC+AGG | 0.395143 | 2_1:+56868325 | Msa0213690:CDS |
| GATTGAAGTGGAGGCGAAGA+AGG | 0.426338 | 2_1:-56868539 | None:intergenic |
| GAATAGGAATCATTCCCTTT+CGG | 0.427034 | 2_1:+56866237 | Msa0213690:CDS |
| GAGCTGTGGAACGAAGTTCC+TGG | 0.439400 | 2_1:+56865917 | Msa0213690:CDS |
| TTAGAATCGTACGGATTATC+GGG | 0.445115 | 2_1:-56867423 | None:intergenic |
| CTGTAGCATCCTCCGTCTCT+TGG | 0.464718 | 2_1:-56866203 | None:intergenic |
| AAATCCATGCAAGCCTTCAC+AGG | 0.473588 | 2_1:-56865980 | None:intergenic |
| CATGGTTTAATGAAGGCAAA+TGG | 0.482143 | 2_1:-56868370 | None:intergenic |
| GTGTCATTGTTAGGGCTCCT+TGG | 0.483894 | 2_1:+56865763 | Msa0213690:intron |
| AAATGATATACAAAAGGATC+AGG | 0.484647 | 2_1:+56866153 | Msa0213690:CDS |
| CGACTCAAGGTCCTCGTAGT+TGG | 0.490317 | 2_1:-56867349 | None:intergenic |
| ACCTTGAGTCGGCTGAAAAG+TGG | 0.500363 | 2_1:+56867361 | Msa0213690:CDS |
| AGAATCAAATGATATACAAA+AGG | 0.500549 | 2_1:+56866147 | Msa0213690:intron |
| AGAGAGTATCGACGAGGGCA+TGG | 0.502831 | 2_1:+56868463 | Msa0213690:CDS |
| CTATACAATGTCAATGGCAG+TGG | 0.503910 | 2_1:+56866004 | Msa0213690:CDS |
| AACCCCTGTGAAGGCTTGCA+TGG | 0.507351 | 2_1:+56865976 | Msa0213690:CDS |
| GGCGAAGAAGGTGGAAAGAA+TGG | 0.508776 | 2_1:-56868527 | None:intergenic |
| GGGCTCCTTGGAATTGGCAT+AGG | 0.510063 | 2_1:+56865775 | Msa0213690:intron |
| TACAGTTCAACAATCAGAAT+AGG | 0.521223 | 2_1:+56866221 | Msa0213690:CDS |
| GTTTCATCATCGAGCTCGAT+AGG | 0.522563 | 2_1:-56865953 | None:intergenic |
| GGCTCCTTGGAATTGGCATA+GGG | 0.526377 | 2_1:+56865776 | Msa0213690:CDS |
| AACAGGGTTATCTTCTTCTG+TGG | 0.537338 | 2_1:+56868342 | Msa0213690:CDS |
| TGAAGTGGAGGCGAAGAAGG+TGG | 0.540709 | 2_1:-56868536 | None:intergenic |
| TGGAATTGGCATAGGGAGGA+AGG | 0.544268 | 2_1:+56865783 | Msa0213690:CDS |
| AGACATCTGTTCATCCGAAA+GGG | 0.550633 | 2_1:-56866251 | None:intergenic |
| GATGTTCATGTTGATACTAC+TGG | 0.558777 | 2_1:+56867535 | Msa0213690:CDS |
| AAGAAGGTGGAAAGAATGGC+AGG | 0.564419 | 2_1:-56868523 | None:intergenic |
| GTCACCACATGGTTTAATGA+AGG | 0.567140 | 2_1:-56868377 | None:intergenic |
| AAGACATCTGTTCATCCGAA+AGG | 0.569782 | 2_1:-56866252 | None:intergenic |
| AAAGGATCAGGAAGAATGCT+CGG | 0.577537 | 2_1:+56866165 | Msa0213690:CDS |
| CATCATCGAGCTCGATAGGA+AGG | 0.579526 | 2_1:-56865949 | None:intergenic |
| TTTAATGAAGGCAAATGGAT+AGG | 0.583671 | 2_1:-56868365 | None:intergenic |
| AATCCATGCAAGCCTTCACA+GGG | 0.585902 | 2_1:-56865979 | None:intergenic |
| TGATGAAACAACCCCTGTGA+AGG | 0.592823 | 2_1:+56865967 | Msa0213690:CDS |
| CCGTGGAGATGTCACTCTGA+AGG | 0.608363 | 2_1:+56868399 | Msa0213690:CDS |
| CAACTACGAGGACCTTGAGT+CGG | 0.610167 | 2_1:+56867350 | Msa0213690:CDS |
| CTTCTTCGCAAGCCAAGAGA+CGG | 0.610238 | 2_1:+56866191 | Msa0213690:CDS |
| TCCTCCCTATGCCAATTCCA+AGG | 0.613237 | 2_1:-56865780 | None:intergenic |
| AGGTGGAAAGAATGGCAGGC+CGG | 0.619387 | 2_1:-56868519 | None:intergenic |
| TCCTTGGAATTGGCATAGGG+AGG | 0.625515 | 2_1:+56865779 | Msa0213690:CDS |
| ATTAAACCATGTGGTGACCG+TGG | 0.636347 | 2_1:+56868382 | Msa0213690:CDS |
| TTTGCCTTCATTAAACCATG+TGG | 0.647403 | 2_1:+56868373 | Msa0213690:CDS |
| CAGACATTTCACAAGAGCTG+TGG | 0.648155 | 2_1:+56865903 | Msa0213690:intron |
| ACAGAAGAAGATAACCCTGT+TGG | 0.653663 | 2_1:-56868340 | None:intergenic |
| CCTTCAGAGTGACATCTCCA+CGG | 0.658194 | 2_1:-56868399 | None:intergenic |
| ACATCTCCACGGTCACCACA+TGG | 0.658298 | 2_1:-56868388 | None:intergenic |
| CTTCGCAAGCCAAGAGACGG+AGG | 0.661156 | 2_1:+56866194 | Msa0213690:CDS |
| ATGCTAGTGGATTGAAGTGG+AGG | 0.664187 | 2_1:-56868548 | None:intergenic |
| CTGATGCTAGTGGATTGAAG+TGG | 0.679667 | 2_1:-56868551 | None:intergenic |
| CTATTATGAAAACACCAACA+GGG | 0.710635 | 2_1:+56868326 | Msa0213690:CDS |
| GTGAAAGAGAGTATCGACGA+GGG | 0.719084 | 2_1:+56868458 | Msa0213690:CDS |
| ATGAAGCACAGACATCTCCA+CGG | 0.721014 | 2_1:+56865535 | Msa0213690:CDS |
| TGCTTCGTCTTCCAACTACG+AGG | 0.733802 | 2_1:+56867338 | Msa0213690:CDS |
| AGTGAAAGAGAGTATCGACG+AGG | 0.756352 | 2_1:+56868457 | Msa0213690:CDS |
| ATCCATGCAAGCCTTCACAG+GGG | 0.784307 | 2_1:-56865978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATGAAGAAAAAAA+AGG | - | chr2_1:56867607-56867626 | None:intergenic | 10.0% |
| !!! | AGTGATTAATTTTAATTTGA+CGG | + | chr2_1:56865639-56865658 | Msa0213690:intron | 15.0% |
| !! | ATAATAAACATATATTCAGA+TGG | - | chr2_1:56866083-56866102 | None:intergenic | 15.0% |
| !! | GAATATATGTTTATTATTTG+TGG | + | chr2_1:56866086-56866105 | Msa0213690:intron | 15.0% |
| !! | ATGCATTTCTTTAAATTAAA+AGG | - | chr2_1:56866124-56866143 | None:intergenic | 15.0% |
| !! | ATAAAAAATAGAAATCTAAC+AGG | - | chr2_1:56866612-56866631 | None:intergenic | 15.0% |
| !!! | ATTTTCTTAAATGAAATGAT+TGG | + | chr2_1:56866645-56866664 | Msa0213690:intron | 15.0% |
| !!! | TTGTTTTAATTCTATTTAAG+TGG | - | chr2_1:56867847-56867866 | None:intergenic | 15.0% |
| !! | TAAAAGAGATTTATAGTATA+TGG | + | chr2_1:56867971-56867990 | Msa0213690:intron | 15.0% |
| !! | GAAAATACTCAAATTATATG+GGG | - | chr2_1:56865721-56865740 | None:intergenic | 20.0% |
| !! | CGAAAATACTCAAATTATAT+GGG | - | chr2_1:56865722-56865741 | None:intergenic | 20.0% |
| !! | TCGAAAATACTCAAATTATA+TGG | - | chr2_1:56865723-56865742 | None:intergenic | 20.0% |
| !! | TACATGTCAATAATTAGATA+AGG | - | chr2_1:56866060-56866079 | None:intergenic | 20.0% |
| !! | AGAATCAAATGATATACAAA+AGG | + | chr2_1:56866147-56866166 | Msa0213690:intron | 20.0% |
| !! | CTATCTATACTTTATGATAT+GGG | - | chr2_1:56866337-56866356 | None:intergenic | 20.0% |
| !! | TATCATTATGTTCATGTATA+TGG | + | chr2_1:56866531-56866550 | Msa0213690:intron | 20.0% |
| !! | ACTAAAAGATAGACAAAATA+TGG | - | chr2_1:56866585-56866604 | None:intergenic | 20.0% |
| !! | TACAAATCATGAAAATTTGA+AGG | - | chr2_1:56866984-56867003 | None:intergenic | 20.0% |
| !! | ACTTGTATTATCATTATAAG+TGG | - | chr2_1:56867020-56867039 | None:intergenic | 20.0% |
| !!! | GTGACTTTTGATAAATTATT+TGG | + | chr2_1:56867271-56867290 | Msa0213690:intron | 20.0% |
| !! | AAACAACAAAAGGATAAAAA+AGG | - | chr2_1:56867766-56867785 | None:intergenic | 20.0% |
| !! | AGTGAAAAATAAACAACAAA+AGG | - | chr2_1:56867776-56867795 | None:intergenic | 20.0% |
| !! | TAATTCTATTTAAGTGGTAT+TGG | - | chr2_1:56867841-56867860 | None:intergenic | 20.0% |
| !! | GATTTTCTATACAATGTCAA+TGG | + | chr2_1:56865998-56866017 | Msa0213690:CDS | 25.0% |
| ! | AAATGATATACAAAAGGATC+AGG | + | chr2_1:56866153-56866172 | Msa0213690:CDS | 25.0% |
| ! | GCTATCTATACTTTATGATA+TGG | - | chr2_1:56866338-56866357 | None:intergenic | 25.0% |
| ! | ATCTTATATATCTCCTGATA+CGG | + | chr2_1:56866441-56866460 | Msa0213690:intron | 25.0% |
| ! | GTTAATGTCTTGTATTGTAT+TGG | + | chr2_1:56866687-56866706 | Msa0213690:intron | 25.0% |
| !! | CAATAACTGTAATTTAGAAC+AGG | + | chr2_1:56866757-56866776 | Msa0213690:intron | 25.0% |
| !! | AAACATTTGTAATGATAACG+AGG | + | chr2_1:56866805-56866824 | Msa0213690:intron | 25.0% |
| !!! | TGTTATTTTCAAATCTGTGA+TGG | + | chr2_1:56866828-56866847 | Msa0213690:intron | 25.0% |
| ! | AAATAATTACTACGAAGGAT+GGG | - | chr2_1:56866861-56866880 | None:intergenic | 25.0% |
| ! | ATCACAAATAATTACTACGA+AGG | - | chr2_1:56866866-56866885 | None:intergenic | 25.0% |
| ! | TTTGACACACAAATGTTAAA+AGG | - | chr2_1:56867044-56867063 | None:intergenic | 25.0% |
| ! | TTTCTAATGCATATTCCATT+GGG | - | chr2_1:56867317-56867336 | None:intergenic | 25.0% |
| !! | TTTTCTAATGCATATTCCAT+TGG | - | chr2_1:56867318-56867337 | None:intergenic | 25.0% |
| ! | TCTTATAATTATGCTCTTTC+AGG | + | chr2_1:56867494-56867513 | Msa0213690:intron | 25.0% |
| ! | TCACTTGATATTGAATAAAG+TGG | + | chr2_1:56867791-56867810 | Msa0213690:intron | 25.0% |
| ! | TGACTTTAATAATACTTGAG+AGG | + | chr2_1:56868002-56868021 | Msa0213690:intron | 25.0% |
| ! | AGATATTCTTTAGTGAGAAA+AGG | + | chr2_1:56868030-56868049 | Msa0213690:intron | 25.0% |
| !! | GTTTTCATACTTTACTAAAC+TGG | + | chr2_1:56868162-56868181 | Msa0213690:intron | 25.0% |
| !! | TTTTAGTAGATAGCAGTTAA+TGG | + | chr2_1:56868261-56868280 | Msa0213690:intron | 25.0% |
| ! | GAAATAAATAAGCGCATTTA+TGG | + | chr2_1:56868421-56868440 | Msa0213690:CDS | 25.0% |
| !! | CTGATAGTACATTTTTAAAC+CGG | + | chr2_1:56868500-56868519 | Msa0213690:CDS | 25.0% |
| ! | CTGATATGCTTTTACAAAGT+CGG | + | chr2_1:56865496-56865515 | Msa0213690:CDS | 30.0% |
| ! | TGATATGCTTTTACAAAGTC+GGG | + | chr2_1:56865497-56865516 | Msa0213690:CDS | 30.0% |
| ! | TTTCTGAATGTGTCATTGTT+AGG | + | chr2_1:56865754-56865773 | Msa0213690:intron | 30.0% |
| ! | TTCTGAATGTGTCATTGTTA+GGG | + | chr2_1:56865755-56865774 | Msa0213690:intron | 30.0% |
| AAATGTCTGATCAAACAACT+AGG | - | chr2_1:56865892-56865911 | None:intergenic | 30.0% | |
| TACAGTTCAACAATCAGAAT+AGG | + | chr2_1:56866221-56866240 | Msa0213690:CDS | 30.0% | |
| CAAATAATTACTACGAAGGA+TGG | - | chr2_1:56866862-56866881 | None:intergenic | 30.0% | |
| CACATTATATGTAGGACTTT+AGG | - | chr2_1:56866911-56866930 | None:intergenic | 30.0% | |
| GGATACTTCACATTATATGT+AGG | - | chr2_1:56866919-56866938 | None:intergenic | 30.0% | |
| ATGGATCAACTTAAAACAGA+AGG | - | chr2_1:56866940-56866959 | None:intergenic | 30.0% | |
| !!! | TGTTTTAAGTTGATCCATAG+TGG | + | chr2_1:56866942-56866961 | Msa0213690:intron | 30.0% |
| TCATAAAAGAGTAACCACTA+TGG | - | chr2_1:56866959-56866978 | None:intergenic | 30.0% | |
| GACTGTTTCATTATGCATAT+AGG | + | chr2_1:56867149-56867168 | Msa0213690:intron | 30.0% | |
| ! | TATTTCTATTCTTTCCCCAA+TGG | + | chr2_1:56867299-56867318 | Msa0213690:intron | 30.0% |
| TTCTAATGCATATTCCATTG+GGG | - | chr2_1:56867316-56867335 | None:intergenic | 30.0% | |
| ! | TTTAGAATCGTACGGATTAT+CGG | - | chr2_1:56867427-56867446 | None:intergenic | 30.0% |
| AACCACTGCAAATATAATTG+TGG | + | chr2_1:56867447-56867466 | Msa0213690:intron | 30.0% | |
| TAAACATTAGAAGACAACAG+TGG | - | chr2_1:56867581-56867600 | None:intergenic | 30.0% | |
| ! | CCTTTGAAGACAATTTATCT+GGG | - | chr2_1:56867738-56867757 | None:intergenic | 30.0% |
| ! | ACCTTTGAAGACAATTTATC+TGG | - | chr2_1:56867739-56867758 | None:intergenic | 30.0% |
| ACAAGTAATATTTGTCTTCG+TGG | + | chr2_1:56867863-56867882 | Msa0213690:intron | 30.0% | |
| TCTATTATGAAAACACCAAC+AGG | + | chr2_1:56868325-56868344 | Msa0213690:CDS | 30.0% | |
| CTATTATGAAAACACCAACA+GGG | + | chr2_1:56868326-56868345 | Msa0213690:CDS | 30.0% | |
| TTTAATGAAGGCAAATGGAT+AGG | - | chr2_1:56868368-56868387 | None:intergenic | 30.0% | |
| AAAAGAAGAATACACCACAG+AGG | + | chr2_1:56865564-56865583 | Msa0213690:intron | 35.0% | |
| AAAGAAGAATACACCACAGA+GGG | + | chr2_1:56865565-56865584 | Msa0213690:intron | 35.0% | |
| TACCAAAATTTGACGTCTTC+TGG | - | chr2_1:56865818-56865837 | None:intergenic | 35.0% | |
| GAATAGGAATCATTCCCTTT+CGG | + | chr2_1:56866237-56866256 | Msa0213690:CDS | 35.0% | |
| ! | AATGATTGGTTCAGCTTTAG+TGG | + | chr2_1:56866659-56866678 | Msa0213690:intron | 35.0% |
| !! | AGTGAAGAGCTTTGAAAAAG+TGG | - | chr2_1:56866728-56866747 | None:intergenic | 35.0% |
| TCAAAGCTAAATCTTGCATG+AGG | - | chr2_1:56867243-56867262 | None:intergenic | 35.0% | |
| ! | TTAGAATCGTACGGATTATC+GGG | - | chr2_1:56867426-56867445 | None:intergenic | 35.0% |
| !!! | CAGTGGTTTTTAGAATCGTA+CGG | - | chr2_1:56867435-56867454 | None:intergenic | 35.0% |
| TGCCACAATTATATTTGCAG+TGG | - | chr2_1:56867452-56867471 | None:intergenic | 35.0% | |
| GATGTTCATGTTGATACTAC+TGG | + | chr2_1:56867535-56867554 | Msa0213690:CDS | 35.0% | |
| CAATTAAGTTCAACGTACAG+CGG | - | chr2_1:56867631-56867650 | None:intergenic | 35.0% | |
| CCCAGATAAATTGTCTTCAA+AGG | + | chr2_1:56867735-56867754 | Msa0213690:intron | 35.0% | |
| AGTAATATTTGTCTTCGTGG+AGG | + | chr2_1:56867866-56867885 | Msa0213690:intron | 35.0% | |
| AGTCTAAAAGTTTGAGCTAG+AGG | + | chr2_1:56867921-56867940 | Msa0213690:intron | 35.0% | |
| GTCTAAAAGTTTGAGCTAGA+GGG | + | chr2_1:56867922-56867941 | Msa0213690:intron | 35.0% | |
| AGAGGGAGACATATATGTAT+AGG | + | chr2_1:56867939-56867958 | Msa0213690:intron | 35.0% | |
| CTACTAAAACTTCTGGCATA+AGG | - | chr2_1:56868250-56868269 | None:intergenic | 35.0% | |
| CTGCTATCTACTAAAACTTC+TGG | - | chr2_1:56868257-56868276 | None:intergenic | 35.0% | |
| CATGGTTTAATGAAGGCAAA+TGG | - | chr2_1:56868373-56868392 | None:intergenic | 35.0% | |
| TTTGCCTTCATTAAACCATG+TGG | + | chr2_1:56868373-56868392 | Msa0213690:CDS | 35.0% | |
| ! | ATTCTTCTTTTCCATGACCG+TGG | - | chr2_1:56865555-56865574 | None:intergenic | 40.0% |
| AAGAAGAATACACCACAGAG+GGG | + | chr2_1:56865566-56865585 | Msa0213690:intron | 40.0% | |
| TCTCGTTTCTCATCACTAGT+TGG | + | chr2_1:56865676-56865695 | Msa0213690:intron | 40.0% | |
| AATTATATGGGGAGTGACTC+AGG | - | chr2_1:56865710-56865729 | None:intergenic | 40.0% | |
| ! | CTCCAGAAGACGTCAAATTT+TGG | + | chr2_1:56865813-56865832 | Msa0213690:CDS | 40.0% |
| ATAGGAAGGTCTTCAATTCC+AGG | - | chr2_1:56865938-56865957 | None:intergenic | 40.0% | |
| CTATACAATGTCAATGGCAG+TGG | + | chr2_1:56866004-56866023 | Msa0213690:CDS | 40.0% | |
| AGTGGTAAGTTCTCTCTGAA+AGG | + | chr2_1:56866022-56866041 | Msa0213690:intron | 40.0% | |
| AAAGGATCAGGAAGAATGCT+CGG | + | chr2_1:56866165-56866184 | Msa0213690:CDS | 40.0% | |
| AGACATCTGTTCATCCGAAA+GGG | - | chr2_1:56866254-56866273 | None:intergenic | 40.0% | |
| AAGACATCTGTTCATCCGAA+AGG | - | chr2_1:56866255-56866274 | None:intergenic | 40.0% | |
| ATTGGGAGATTTATCGCACT+AGG | - | chr2_1:56866370-56866389 | None:intergenic | 40.0% | |
| GTGCGATAAATCTCCCAATA+CGG | + | chr2_1:56866371-56866390 | Msa0213690:intron | 40.0% | |
| GATAAATCTCCCAATACGGT+GGG | + | chr2_1:56866375-56866394 | Msa0213690:intron | 40.0% | |
| ATAAATCTCCCAATACGGTG+GGG | + | chr2_1:56866376-56866395 | Msa0213690:intron | 40.0% | |
| AGAACAATCAGACCCATCAT+AGG | + | chr2_1:56866404-56866423 | Msa0213690:intron | 40.0% | |
| GAACAATCAGACCCATCATA+GGG | + | chr2_1:56866405-56866424 | Msa0213690:intron | 40.0% | |
| TCTACAACAGACCCTATGAT+GGG | - | chr2_1:56866419-56866438 | None:intergenic | 40.0% | |
| ATATATCTCCTGATACGGCA+TGG | + | chr2_1:56866446-56866465 | Msa0213690:intron | 40.0% | |
| ATAGCTATTGCGAAACTTCC+GGG | - | chr2_1:56867203-56867222 | None:intergenic | 40.0% | |
| GATAGCTATTGCGAAACTTC+CGG | - | chr2_1:56867204-56867223 | None:intergenic | 40.0% | |
| AGTTTCGCAATAGCTATCTC+AGG | + | chr2_1:56867206-56867225 | Msa0213690:intron | 40.0% | |
| CAATAGCTATCTCAGGATTC+AGG | + | chr2_1:56867213-56867232 | Msa0213690:intron | 40.0% | |
| ! | TGCTCTTTCAGGAACTTTTC+TGG | + | chr2_1:56867505-56867524 | Msa0213690:intron | 40.0% |
| ACCACCATTTGAACAGAATG+TGG | + | chr2_1:56867689-56867708 | Msa0213690:intron | 40.0% | |
| TGAGCCACATTCTGTTCAAA+TGG | - | chr2_1:56867696-56867715 | None:intergenic | 40.0% | |
| ! | TATTGGAAGTATGCGTTTGG+AGG | - | chr2_1:56867824-56867843 | None:intergenic | 40.0% |
| ! | TGGTATTGGAAGTATGCGTT+TGG | - | chr2_1:56867827-56867846 | None:intergenic | 40.0% |
| TGATCATGTCATGTCTACGA+AGG | - | chr2_1:56868125-56868144 | None:intergenic | 40.0% | |
| ! | GTGCTTTTGTTCCTAAAGCT+GGG | + | chr2_1:56868184-56868203 | Msa0213690:intron | 40.0% |
| ! | TGCTTTTGTTCCTAAAGCTG+GGG | + | chr2_1:56868185-56868204 | Msa0213690:intron | 40.0% |
| TGATTAAAGACCCCAGCTTT+AGG | - | chr2_1:56868198-56868217 | None:intergenic | 40.0% | |
| TGACTCGCATTTACATGTGT+AGG | + | chr2_1:56868295-56868314 | Msa0213690:intron | 40.0% | |
| ACAGAAGAAGATAACCCTGT+TGG | - | chr2_1:56868343-56868362 | None:intergenic | 40.0% | |
| AACAGGGTTATCTTCTTCTG+TGG | + | chr2_1:56868342-56868361 | Msa0213690:CDS | 40.0% | |
| GTCACCACATGGTTTAATGA+AGG | - | chr2_1:56868380-56868399 | None:intergenic | 40.0% | |
| ATGAAGCACAGACATCTCCA+CGG | + | chr2_1:56865535-56865554 | Msa0213690:CDS | 45.0% | |
| AGAAGAATACACCACAGAGG+GGG | + | chr2_1:56865567-56865586 | Msa0213690:intron | 45.0% | |
| TTGTTAGGGCTCCTTGGAAT+TGG | + | chr2_1:56865769-56865788 | Msa0213690:intron | 45.0% | |
| CAGACATTTCACAAGAGCTG+TGG | + | chr2_1:56865903-56865922 | Msa0213690:intron | 45.0% | |
| GTTTCATCATCGAGCTCGAT+AGG | - | chr2_1:56865956-56865975 | None:intergenic | 45.0% | |
| TGATGAAACAACCCCTGTGA+AGG | + | chr2_1:56865967-56865986 | Msa0213690:CDS | 45.0% | |
| AATCCATGCAAGCCTTCACA+GGG | - | chr2_1:56865982-56866001 | None:intergenic | 45.0% | |
| AAATCCATGCAAGCCTTCAC+AGG | - | chr2_1:56865983-56866002 | None:intergenic | 45.0% | |
| CGATAAATCTCCCAATACGG+TGG | + | chr2_1:56866374-56866393 | Msa0213690:intron | 45.0% | |
| TCTATAGACCCCACCGTATT+GGG | - | chr2_1:56866387-56866406 | None:intergenic | 45.0% | |
| TTCTATAGACCCCACCGTAT+TGG | - | chr2_1:56866388-56866407 | None:intergenic | 45.0% | |
| GTCTACAACAGACCCTATGA+TGG | - | chr2_1:56866420-56866439 | None:intergenic | 45.0% | |
| ! | CTCCAACGAGGATATTTTCC+CGG | + | chr2_1:56867182-56867201 | Msa0213690:intron | 45.0% |
| TTCCGGGAAAATATCCTCGT+TGG | - | chr2_1:56867187-56867206 | None:intergenic | 45.0% | |
| GTGGTTCGCAGATTGCTTTA+AGG | + | chr2_1:56867380-56867399 | Msa0213690:CDS | 45.0% | |
| GCCACATTCTGTTCAAATGG+TGG | - | chr2_1:56867693-56867712 | None:intergenic | 45.0% | |
| TATTTGTCTTCGTGGAGGCA+TGG | + | chr2_1:56867871-56867890 | Msa0213690:intron | 45.0% | |
| ! | GATAAGGAGGTTTGACTCGA+TGG | + | chr2_1:56867893-56867912 | Msa0213690:intron | 45.0% |
| ! | GGTGCTTTTGTTCCTAAAGC+TGG | + | chr2_1:56868183-56868202 | Msa0213690:intron | 45.0% |
| ATTAAACCATGTGGTGACCG+TGG | + | chr2_1:56868382-56868401 | Msa0213690:CDS | 45.0% | |
| !! | AGTGAAAGAGAGTATCGACG+AGG | + | chr2_1:56868457-56868476 | Msa0213690:CDS | 45.0% |
| !! | GTGAAAGAGAGTATCGACGA+GGG | + | chr2_1:56868458-56868477 | Msa0213690:CDS | 45.0% |
| AAGAAGGTGGAAAGAATGGC+AGG | - | chr2_1:56868526-56868545 | None:intergenic | 45.0% | |
| AAACTCTTCATCCCCCTCTG+TGG | - | chr2_1:56865581-56865600 | None:intergenic | 50.0% | |
| ! | GTGTCATTGTTAGGGCTCCT+TGG | + | chr2_1:56865763-56865782 | Msa0213690:intron | 50.0% |
| GGCTCCTTGGAATTGGCATA+GGG | + | chr2_1:56865776-56865795 | Msa0213690:CDS | 50.0% | |
| TCCTTGGAATTGGCATAGGG+AGG | + | chr2_1:56865779-56865798 | Msa0213690:CDS | 50.0% | |
| TCCTCCCTATGCCAATTCCA+AGG | - | chr2_1:56865783-56865802 | None:intergenic | 50.0% | |
| TGGAATTGGCATAGGGAGGA+AGG | + | chr2_1:56865783-56865802 | Msa0213690:CDS | 50.0% | |
| CATCATCGAGCTCGATAGGA+AGG | - | chr2_1:56865952-56865971 | None:intergenic | 50.0% | |
| ATCCATGCAAGCCTTCACAG+GGG | - | chr2_1:56865981-56866000 | None:intergenic | 50.0% | |
| CTTCTTCGCAAGCCAAGAGA+CGG | + | chr2_1:56866191-56866210 | Msa0213690:CDS | 50.0% | |
| TCACTAGACCATGCCGTATC+AGG | - | chr2_1:56866457-56866476 | None:intergenic | 50.0% | |
| TGCTTCGTCTTCCAACTACG+AGG | + | chr2_1:56867338-56867357 | Msa0213690:CDS | 50.0% | |
| CAACTACGAGGACCTTGAGT+CGG | + | chr2_1:56867350-56867369 | Msa0213690:CDS | 50.0% | |
| ACCTTGAGTCGGCTGAAAAG+TGG | + | chr2_1:56867361-56867380 | Msa0213690:CDS | 50.0% | |
| !! | ACCACTTTTCAGCCGACTCA+AGG | - | chr2_1:56867365-56867384 | None:intergenic | 50.0% |
| ! | TCTTCGTGGAGGCATGGATA+AGG | + | chr2_1:56867877-56867896 | Msa0213690:intron | 50.0% |
| CCTTCAGAGTGACATCTCCA+CGG | - | chr2_1:56868402-56868421 | None:intergenic | 50.0% | |
| GGCGAAGAAGGTGGAAAGAA+TGG | - | chr2_1:56868530-56868549 | None:intergenic | 50.0% | |
| GATTGAAGTGGAGGCGAAGA+AGG | - | chr2_1:56868542-56868561 | None:intergenic | 50.0% | |
| CACAGACATCTCCACGGTCA+TGG | + | chr2_1:56865541-56865560 | Msa0213690:intron | 55.0% | |
| GGGCTCCTTGGAATTGGCAT+AGG | + | chr2_1:56865775-56865794 | Msa0213690:intron | 55.0% | |
| GAGCTGTGGAACGAAGTTCC+TGG | + | chr2_1:56865917-56865936 | Msa0213690:CDS | 55.0% | |
| AACCCCTGTGAAGGCTTGCA+TGG | + | chr2_1:56865976-56865995 | Msa0213690:CDS | 55.0% | |
| CTGTAGCATCCTCCGTCTCT+TGG | - | chr2_1:56866206-56866225 | None:intergenic | 55.0% | |
| CGACTCAAGGTCCTCGTAGT+TGG | - | chr2_1:56867352-56867371 | None:intergenic | 55.0% | |
| ! | TCGTGGAGGCATGGATAAGG+AGG | + | chr2_1:56867880-56867899 | Msa0213690:intron | 55.0% |
| ACATCTCCACGGTCACCACA+TGG | - | chr2_1:56868391-56868410 | None:intergenic | 55.0% | |
| CCGTGGAGATGTCACTCTGA+AGG | + | chr2_1:56868399-56868418 | Msa0213690:CDS | 55.0% | |
| !! | AGAGAGTATCGACGAGGGCA+TGG | + | chr2_1:56868463-56868482 | Msa0213690:CDS | 55.0% |
| AGGTGGAAAGAATGGCAGGC+CGG | - | chr2_1:56868522-56868541 | None:intergenic | 55.0% | |
| TGAAGTGGAGGCGAAGAAGG+TGG | - | chr2_1:56868539-56868558 | None:intergenic | 55.0% | |
| CTTCGCAAGCCAAGAGACGG+AGG | + | chr2_1:56866194-56866213 | Msa0213690:CDS | 60.0% | |
| GGCGACAGACTACTCCAACG+AGG | + | chr2_1:56867170-56867189 | Msa0213690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 56865489 | 56868567 | 56865489 | ID=Msa0213690;Name=Msa0213690 |
| chr2_1 | mRNA | 56865489 | 56868567 | 56865489 | ID=Msa0213690-mRNA-1;Parent=Msa0213690;Name=Msa0213690-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.85|1|1|7|0|262 |
| chr2_1 | exon | 56865489 | 56865556 | 56865489 | ID=Msa0213690-mRNA-1:exon:15821;Parent=Msa0213690-mRNA-1 |
| chr2_1 | exon | 56865776 | 56865834 | 56865776 | ID=Msa0213690-mRNA-1:exon:15822;Parent=Msa0213690-mRNA-1 |
| chr2_1 | exon | 56865906 | 56866025 | 56865906 | ID=Msa0213690-mRNA-1:exon:15823;Parent=Msa0213690-mRNA-1 |
| chr2_1 | exon | 56866149 | 56866298 | 56866149 | ID=Msa0213690-mRNA-1:exon:15824;Parent=Msa0213690-mRNA-1 |
| chr2_1 | exon | 56867334 | 56867433 | 56867334 | ID=Msa0213690-mRNA-1:exon:15825;Parent=Msa0213690-mRNA-1 |
| chr2_1 | exon | 56867516 | 56867556 | 56867516 | ID=Msa0213690-mRNA-1:exon:15826;Parent=Msa0213690-mRNA-1 |
| chr2_1 | exon | 56868317 | 56868567 | 56868317 | ID=Msa0213690-mRNA-1:exon:15827;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56865489 | 56865556 | 56865489 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56865776 | 56865834 | 56865776 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56865906 | 56866025 | 56865906 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56866149 | 56866298 | 56866149 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56867334 | 56867433 | 56867334 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56867516 | 56867556 | 56867516 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| chr2_1 | CDS | 56868317 | 56868567 | 56868317 | ID=Msa0213690-mRNA-1:cds;Parent=Msa0213690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
