Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101660 | XP_013448643.1 | 65.018 | 283 | 43 | 5 | 23 | 254 | 11 | 288 | 5.67e-112 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101660 | sp|Q6NLW5|XRI1_ARATH | 35.918 | 245 | 102 | 8 | 26 | 220 | 12 | 251 | 2.79e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101660 | A0A072U9Z7 | 65.018 | 283 | 43 | 5 | 23 | 254 | 11 | 288 | 2.71e-112 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012170 | Msa1101660 | 0.807690 | 4.469623e-50 | -8.615850e-47 |
| Msa0213690 | Msa1101660 | 0.848180 | 7.225342e-60 | -8.615850e-47 |
| Msa0450630 | Msa1101660 | 0.857778 | 1.294838e-62 | -8.615850e-47 |
| Msa1101660 | Msa1253510 | 0.957169 | 5.186493e-115 | -8.615850e-47 |
| Msa1101660 | Msa1414750 | -0.800809 | 1.210962e-48 | -8.615850e-47 |
| Msa0240420 | Msa1101660 | 0.827813 | 1.271848e-54 | -8.615850e-47 |
| Msa0516130 | Msa1101660 | 0.801074 | 1.068821e-48 | -8.615850e-47 |
| Msa0917910 | Msa1101660 | 0.802433 | 5.623144e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101660 | MtrunA17_Chr7g0236031 | 65.018 | 283 | 43 | 5 | 23 | 254 | 11 | 288 | 5.21e-116 | 335 |
| Msa1101660 | MtrunA17_Chr8g0340041 | 44.758 | 248 | 84 | 7 | 23 | 220 | 8 | 252 | 3.86e-57 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101660 | AT5G48720.2 | 35.918 | 245 | 102 | 8 | 26 | 220 | 12 | 251 | 2.83e-31 | 117 |
| Msa1101660 | AT5G48720.4 | 35.918 | 245 | 102 | 8 | 26 | 220 | 12 | 251 | 2.83e-31 | 117 |
| Msa1101660 | AT5G48720.1 | 36.620 | 213 | 83 | 5 | 56 | 220 | 9 | 217 | 1.47e-30 | 115 |
| Msa1101660 | AT5G48720.3 | 36.620 | 213 | 83 | 5 | 56 | 220 | 9 | 217 | 1.47e-30 | 115 |
Find 61 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAAAATTTGACGTCTTC+TGG | 0.204285 | 7_3:+32585330 | None:intergenic |
| CTCCAGAAGACGTCAAATTT+TGG | 0.204893 | 7_3:-32585332 | Msa1101660:intron |
| GAAATAAATAAGCGCATTTA+TGG | 0.237911 | 7_3:-32582726 | Msa1101660:CDS |
| TTTAGAATCGTACGGATTAT+CGG | 0.334187 | 7_3:+32583723 | None:intergenic |
| GTGGTTCGCAGATTGCTTTA+AGG | 0.364219 | 7_3:-32583767 | Msa1101660:CDS |
| TTGTTAGGGCTCCTTGGAAT+TGG | 0.379300 | 7_3:-32585376 | Msa1101660:intron |
| ATAGGAAGGTCTTCAATTCC+AGG | 0.392770 | 7_3:+32585210 | None:intergenic |
| GATTGAAGTGGAGGCGAAGA+AGG | 0.426338 | 7_3:+32582608 | None:intergenic |
| GAATAGGAATCATTCCCTTT+CGG | 0.427034 | 7_3:-32584908 | Msa1101660:CDS |
| TTAGAATCGTACGGATTATC+GGG | 0.445115 | 7_3:+32583724 | None:intergenic |
| GAGTTGTGGAACGAAGTTCC+TGG | 0.461807 | 7_3:-32585228 | Msa1101660:CDS |
| CTGTAGCATCCTCCGTCTCT+TGG | 0.464718 | 7_3:+32584942 | None:intergenic |
| AAATCCATGCAAGCCTTCAC+AGG | 0.473588 | 7_3:+32585165 | None:intergenic |
| GTGTCATTGTTAGGGCTCCT+TGG | 0.483894 | 7_3:-32585382 | Msa1101660:intron |
| GACATCTCCACGGTCACCAC+AGG | 0.488010 | 7_3:+32582758 | None:intergenic |
| CGACTCAAGGTCCTCGTAGT+TGG | 0.490317 | 7_3:+32583798 | None:intergenic |
| ACCTTGAGTCGGCTGAAAAG+TGG | 0.500363 | 7_3:-32583786 | Msa1101660:CDS |
| AAATGATATACAGAAGGATC+AGG | 0.500808 | 7_3:-32584992 | Msa1101660:CDS |
| AGAGAGTATCGACGAGGGCA+TGG | 0.502831 | 7_3:-32582684 | Msa1101660:CDS |
| CTATACAATGTCAATGGCAG+TGG | 0.503910 | 7_3:-32585141 | Msa1101660:intron |
| AACCCCTGTGAAGGCTTGCA+TGG | 0.507351 | 7_3:-32585169 | Msa1101660:CDS |
| GGCGAAGAAGGTGGAAAGAA+TGG | 0.508776 | 7_3:+32582620 | None:intergenic |
| GGGCTCCTTGGAATTGGCAT+AGG | 0.510063 | 7_3:-32585370 | Msa1101660:CDS |
| CAGGGTTTAATGAAGGCAAA+TGG | 0.514467 | 7_3:+32582777 | None:intergenic |
| TACAGTTCAACAATCAGAAT+AGG | 0.521223 | 7_3:-32584924 | Msa1101660:CDS |
| GTTTCATCATCGAGCTCGAT+AGG | 0.522563 | 7_3:+32585192 | None:intergenic |
| GGCTCCTTGGAATTGGCATA+GGG | 0.526377 | 7_3:-32585369 | Msa1101660:CDS |
| TGAAGTGGAGGCGAAGAAGG+TGG | 0.540709 | 7_3:+32582611 | None:intergenic |
| AACATGGTTATCTTCTTCTG+TGG | 0.550633 | 7_3:-32582805 | Msa1101660:CDS |
| AGACATCTGTTCATCCGAAA+GGG | 0.550633 | 7_3:+32584894 | None:intergenic |
| GATGTTCATGTTGATACTAC+TGG | 0.558777 | 7_3:-32583612 | Msa1101660:intron |
| CAGACATTTCACAAGAGTTG+TGG | 0.560073 | 7_3:-32585242 | Msa1101660:CDS |
| AAGAAGGTGGAAAGAATGGC+AGG | 0.564419 | 7_3:+32582624 | None:intergenic |
| GAAGGATCAGGAAGAATGCT+CGG | 0.568679 | 7_3:-32584980 | Msa1101660:CDS |
| AAGACATCTGTTCATCCGAA+AGG | 0.569782 | 7_3:+32584893 | None:intergenic |
| TTTAATGAAGGCAAATGGAT+AGG | 0.570098 | 7_3:+32582782 | None:intergenic |
| CATCATCGAGCTCGATAGGA+AGG | 0.579526 | 7_3:+32585196 | None:intergenic |
| GTCACCACAGGGTTTAATGA+AGG | 0.583162 | 7_3:+32582770 | None:intergenic |
| AATCCATGCAAGCCTTCACA+GGG | 0.585902 | 7_3:+32585166 | None:intergenic |
| TGATGAAACAACCCCTGTGA+AGG | 0.592823 | 7_3:-32585178 | Msa1101660:CDS |
| AGAATCAAATGATATACAGA+AGG | 0.600358 | 7_3:-32584998 | Msa1101660:CDS |
| CCGTGGAGATGTCACTCTGA+AGG | 0.608363 | 7_3:-32582748 | Msa1101660:CDS |
| CAACTACGAGGACCTTGAGT+CGG | 0.610167 | 7_3:-32583797 | Msa1101660:CDS |
| CTTCTTCGCAAGCCAAGAGA+CGG | 0.610238 | 7_3:-32584954 | Msa1101660:CDS |
| TCCTCCCTATGCCAATTCCA+AGG | 0.613237 | 7_3:+32585365 | None:intergenic |
| ATTAAACCCTGTGGTGACCG+TGG | 0.617665 | 7_3:-32582765 | Msa1101660:CDS |
| AGGTGGAAAGAATGGCAGGC+CGG | 0.619387 | 7_3:+32582628 | None:intergenic |
| TCCTTGGAATTGGCATAGGG+AGG | 0.625515 | 7_3:-32585366 | Msa1101660:CDS |
| TTTGCCTTCATTAAACCCTG+TGG | 0.639784 | 7_3:-32582774 | Msa1101660:CDS |
| ACAGAAGAAGATAACCATGT+TGG | 0.655353 | 7_3:+32582807 | None:intergenic |
| CCTTCAGAGTGACATCTCCA+CGG | 0.658194 | 7_3:+32582748 | None:intergenic |
| CTTCGCAAGCCAAGAGACGG+AGG | 0.661156 | 7_3:-32584951 | Msa1101660:CDS |
| ATGCTAGTGGATTGAAGTGG+AGG | 0.664187 | 7_3:+32582599 | None:intergenic |
| ACATCTCCACGGTCACCACA+GGG | 0.674318 | 7_3:+32582759 | None:intergenic |
| CTATTATGAAAACACCAACA+TGG | 0.675010 | 7_3:-32582821 | Msa1101660:CDS |
| CTGATGCTAGTGGATTGAAG+TGG | 0.679667 | 7_3:+32582596 | None:intergenic |
| GTGAAAGAGAGTATCGACGA+GGG | 0.719084 | 7_3:-32582689 | Msa1101660:CDS |
| ATGAAGCACAGACATCTCCA+CGG | 0.721014 | 7_3:-32585610 | Msa1101660:intron |
| TGCTTCGTCTTCCAACTACG+AGG | 0.733802 | 7_3:-32583809 | Msa1101660:CDS |
| AGTGAAAGAGAGTATCGACG+AGG | 0.756352 | 7_3:-32582690 | Msa1101660:CDS |
| ATCCATGCAAGCCTTCACAG+GGG | 0.784307 | 7_3:+32585167 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATGAAGAAAAAAA+AGG | + | chr7_3:32584718-32584737 | None:intergenic | 10.0% |
| !! | ATAATAAACATATATTCAGA+TGG | + | chr7_3:32583196-32583215 | None:intergenic | 15.0% |
| !! | GAATATATGTTTATTATTTG+TGG | - | chr7_3:32583199-32583218 | Msa1101660:intron | 15.0% |
| !! | ATGCATTTCTTTAAATTAAA+AGG | + | chr7_3:32583237-32583256 | None:intergenic | 15.0% |
| !! | ATAAAAAATAGAAATCTAAC+AGG | + | chr7_3:32583725-32583744 | None:intergenic | 15.0% |
| !!! | ATTTTCTTAAATGAAATGAT+TGG | - | chr7_3:32583758-32583777 | Msa1101660:CDS | 15.0% |
| !! | TAAAAGAGATTTATAGTATA+TGG | - | chr7_3:32585082-32585101 | Msa1101660:intron | 15.0% |
| !!! | AGTGATTAATTTTAATTCGA+CGG | - | chr7_3:32582752-32582771 | Msa1101660:CDS | 20.0% |
| !! | GAAAATACTCAAATTATATG+GGG | + | chr7_3:32582834-32582853 | None:intergenic | 20.0% |
| !! | CGAAAATACTCAAATTATAT+GGG | + | chr7_3:32582835-32582854 | None:intergenic | 20.0% |
| !! | TCGAAAATACTCAAATTATA+TGG | + | chr7_3:32582836-32582855 | None:intergenic | 20.0% |
| !! | TACATGTCAATAATTAGATA+AGG | + | chr7_3:32583173-32583192 | None:intergenic | 20.0% |
| !! | CTATCTATACTTTATGATAT+GGG | + | chr7_3:32583450-32583469 | None:intergenic | 20.0% |
| !! | TATCATTATGTTCATGTATA+TGG | - | chr7_3:32583644-32583663 | Msa1101660:intron | 20.0% |
| !! | ACTAAAAGATAGACAAAATA+TGG | + | chr7_3:32583698-32583717 | None:intergenic | 20.0% |
| !! | TACAAATCATGAAAATTTGA+AGG | + | chr7_3:32584095-32584114 | None:intergenic | 20.0% |
| !! | ACTTGTATTATCATTATAAG+TGG | + | chr7_3:32584131-32584150 | None:intergenic | 20.0% |
| !!! | GTGACTTTTGATAAATTATT+TGG | - | chr7_3:32584382-32584401 | Msa1101660:intron | 20.0% |
| !! | AAACAACAAAAGGATAAAAA+AGG | + | chr7_3:32584877-32584896 | None:intergenic | 20.0% |
| !! | AGTGAAAAATAAACAACAAA+AGG | + | chr7_3:32584887-32584906 | None:intergenic | 20.0% |
| !!! | TTGTTTTAATTCTAGTTAAG+TGG | + | chr7_3:32584958-32584977 | None:intergenic | 20.0% |
| !! | GATTTTCTATACAATGTCAA+TGG | - | chr7_3:32583111-32583130 | Msa1101660:intron | 25.0% |
| ! | AGAATCAAATGATATACAGA+AGG | - | chr7_3:32583260-32583279 | Msa1101660:intron | 25.0% |
| ! | GCTATCTATACTTTATGATA+TGG | + | chr7_3:32583451-32583470 | None:intergenic | 25.0% |
| ! | ATCTTATATATCTCCTGATA+CGG | - | chr7_3:32583554-32583573 | Msa1101660:intron | 25.0% |
| ! | GTTAATGTCTTGTATTGTAT+TGG | - | chr7_3:32583800-32583819 | Msa1101660:CDS | 25.0% |
| !! | CAATAACTGTAATTTAGAAC+AGG | - | chr7_3:32583870-32583889 | Msa1101660:intron | 25.0% |
| ! | TACAAATGTTTAAGTGAAAC+AGG | + | chr7_3:32583909-32583928 | None:intergenic | 25.0% |
| !! | AAACATTTGTAATGATAACG+AGG | - | chr7_3:32583918-32583937 | Msa1101660:intron | 25.0% |
| !!! | TGTTATTTTCAAATCTGTGA+TGG | - | chr7_3:32583941-32583960 | Msa1101660:intron | 25.0% |
| ! | AAATAATTACTACGAAGGAT+GGG | + | chr7_3:32583974-32583993 | None:intergenic | 25.0% |
| ! | ATCACAAATAATTACTACGA+AGG | + | chr7_3:32583979-32583998 | None:intergenic | 25.0% |
| ! | TTTGACACACAAATGTTAAA+AGG | + | chr7_3:32584155-32584174 | None:intergenic | 25.0% |
| ! | TTTCTAATGCATATTCCATT+GGG | + | chr7_3:32584428-32584447 | None:intergenic | 25.0% |
| !! | TTTTCTAATGCATATTCCAT+TGG | + | chr7_3:32584429-32584448 | None:intergenic | 25.0% |
| ! | TCTTATAATTATGGTCTTTC+AGG | - | chr7_3:32584605-32584624 | Msa1101660:intron | 25.0% |
| ! | TCACTTGATATTGAATAAAG+TGG | - | chr7_3:32584902-32584921 | Msa1101660:CDS | 25.0% |
| !! | TAATTCTAGTTAAGTGGTAT+TGG | + | chr7_3:32584952-32584971 | None:intergenic | 25.0% |
| ! | TGACTTTAATAATACTTGAC+AGG | - | chr7_3:32585113-32585132 | Msa1101660:intron | 25.0% |
| ! | AGATATTCTTTAGTGAGAAA+AGG | - | chr7_3:32585141-32585160 | Msa1101660:intron | 25.0% |
| !! | GTTTTCATACTTTACTAAAC+TGG | - | chr7_3:32585273-32585292 | Msa1101660:intron | 25.0% |
| !! | TTTTAGTAGATAGCAGTTAA+TGG | - | chr7_3:32585372-32585391 | Msa1101660:CDS | 25.0% |
| ! | GAAATAAATAAGCGCATTTA+TGG | - | chr7_3:32585532-32585551 | Msa1101660:intron | 25.0% |
| !! | CTGATAGTACATTTTTAAAC+CGG | - | chr7_3:32585611-32585630 | Msa1101660:CDS | 25.0% |
| ! | CTGATATGCTTTTACAAAGT+CGG | - | chr7_3:32582609-32582628 | Msa1101660:CDS | 30.0% |
| ! | TGATATGCTTTTACAAAGTC+GGG | - | chr7_3:32582610-32582629 | Msa1101660:CDS | 30.0% |
| ! | TTTCTGAATGTGTCATTGTT+AGG | - | chr7_3:32582867-32582886 | Msa1101660:intron | 30.0% |
| ! | TTCTGAATGTGTCATTGTTA+GGG | - | chr7_3:32582868-32582887 | Msa1101660:intron | 30.0% |
| AAATGTCTGATCAAACAACT+AGG | + | chr7_3:32583005-32583024 | None:intergenic | 30.0% | |
| AAATGATATACAGAAGGATC+AGG | - | chr7_3:32583266-32583285 | Msa1101660:intron | 30.0% | |
| TACAGTTCAACAATCAGAAT+AGG | - | chr7_3:32583334-32583353 | Msa1101660:intron | 30.0% | |
| ATAGCATAAACATACCTAGT+GGG | - | chr7_3:32583466-32583485 | Msa1101660:intron | 30.0% | |
| CAAATAATTACTACGAAGGA+TGG | + | chr7_3:32583975-32583994 | None:intergenic | 30.0% | |
| TCACATATATGTAGGACTTT+AGG | + | chr7_3:32584023-32584042 | None:intergenic | 30.0% | |
| AGGATACTTCACATATATGT+AGG | + | chr7_3:32584031-32584050 | None:intergenic | 30.0% | |
| ATGGATCAACTTAAAACAGA+AGG | + | chr7_3:32584051-32584070 | None:intergenic | 30.0% | |
| !!! | TGTTTTAAGTTGATCCATAG+TGG | - | chr7_3:32584053-32584072 | Msa1101660:intron | 30.0% |
| TCATAAAAGAGTAACCACTA+TGG | + | chr7_3:32584070-32584089 | None:intergenic | 30.0% | |
| GACTGTTTCATTATGCATAT+AGG | - | chr7_3:32584260-32584279 | Msa1101660:intron | 30.0% | |
| ! | TATTTCTATTCTTTCCCCAA+TGG | - | chr7_3:32584410-32584429 | Msa1101660:intron | 30.0% |
| TTCTAATGCATATTCCATTG+GGG | + | chr7_3:32584427-32584446 | None:intergenic | 30.0% | |
| ! | TTTAGAATCGTACGGATTAT+CGG | + | chr7_3:32584538-32584557 | None:intergenic | 30.0% |
| AACCACTGCAAATATAATTG+TGG | - | chr7_3:32584558-32584577 | Msa1101660:intron | 30.0% | |
| TTCCACAATTATATTTGCAG+TGG | + | chr7_3:32584563-32584582 | None:intergenic | 30.0% | |
| TAAACATTAGAAGACAACAG+TGG | + | chr7_3:32584692-32584711 | None:intergenic | 30.0% | |
| ! | CCTTTGAAGACAATTTATCT+GGG | + | chr7_3:32584849-32584868 | None:intergenic | 30.0% |
| ! | ACCTTTGAAGACAATTTATC+TGG | + | chr7_3:32584850-32584869 | None:intergenic | 30.0% |
| ACAAGTAATATTTGTCTTCG+TGG | - | chr7_3:32584974-32584993 | Msa1101660:CDS | 30.0% | |
| CTACTAAAACTTATGGCATA+AGG | + | chr7_3:32585361-32585380 | None:intergenic | 30.0% | |
| CTGCTATCTACTAAAACTTA+TGG | + | chr7_3:32585368-32585387 | None:intergenic | 30.0% | |
| CTATTATGAAAACACCAACA+TGG | - | chr7_3:32585437-32585456 | Msa1101660:intron | 30.0% | |
| TTTAATGAAGGCAAATGGAT+AGG | + | chr7_3:32585479-32585498 | None:intergenic | 30.0% | |
| AAAAGAAGAATACACCACAG+AGG | - | chr7_3:32582677-32582696 | Msa1101660:CDS | 35.0% | |
| AAAGAAGAATACACCACAGA+GGG | - | chr7_3:32582678-32582697 | Msa1101660:CDS | 35.0% | |
| TACCAAAATTTGACGTCTTC+TGG | + | chr7_3:32582931-32582950 | None:intergenic | 35.0% | |
| GAATAGGAATCATTCCCTTT+CGG | - | chr7_3:32583350-32583369 | Msa1101660:intron | 35.0% | |
| GATAGCATAAACATACCTAG+TGG | - | chr7_3:32583465-32583484 | Msa1101660:intron | 35.0% | |
| ! | AATGATTGGTTCAGCTTTAG+TGG | - | chr7_3:32583772-32583791 | Msa1101660:CDS | 35.0% |
| !! | AGTGAAGAGCTTTGAAAAAG+TGG | + | chr7_3:32583841-32583860 | None:intergenic | 35.0% |
| TTCATTATGCATATAGGCGA+CGG | - | chr7_3:32584266-32584285 | Msa1101660:intron | 35.0% | |
| TCAAAGCTAAATCTTGCATG+AGG | + | chr7_3:32584354-32584373 | None:intergenic | 35.0% | |
| ! | TTAGAATCGTACGGATTATC+GGG | + | chr7_3:32584537-32584556 | None:intergenic | 35.0% |
| !!! | CAGTGGTTTTTAGAATCGTA+CGG | + | chr7_3:32584546-32584565 | None:intergenic | 35.0% |
| GATGTTCATGTTGATACTAC+TGG | - | chr7_3:32584646-32584665 | Msa1101660:intron | 35.0% | |
| CAATTAAGTTCAACGTACAG+CGG | + | chr7_3:32584742-32584761 | None:intergenic | 35.0% | |
| CCCAGATAAATTGTCTTCAA+AGG | - | chr7_3:32584846-32584865 | Msa1101660:intron | 35.0% | |
| AGTAATATTTGTCTTCGTGG+AGG | - | chr7_3:32584977-32584996 | Msa1101660:CDS | 35.0% | |
| AGTCTAAAAGTTTGAGCTAG+AGG | - | chr7_3:32585032-32585051 | Msa1101660:intron | 35.0% | |
| GTCTAAAAGTTTGAGCTAGA+GGG | - | chr7_3:32585033-32585052 | Msa1101660:intron | 35.0% | |
| ACAGAAGAAGATAACCATGT+TGG | + | chr7_3:32585454-32585473 | None:intergenic | 35.0% | |
| AACATGGTTATCTTCTTCTG+TGG | - | chr7_3:32585453-32585472 | Msa1101660:intron | 35.0% | |
| ! | ATTCTTCTTTTCCATGACCG+TGG | + | chr7_3:32582668-32582687 | None:intergenic | 40.0% |
| AAGAAGAATACACCACAGAG+GGG | - | chr7_3:32582679-32582698 | Msa1101660:CDS | 40.0% | |
| TCTCGTTTCTCATCACTAGT+TGG | - | chr7_3:32582789-32582808 | Msa1101660:CDS | 40.0% | |
| AATTATATGGGGAGTGACTC+AGG | + | chr7_3:32582823-32582842 | None:intergenic | 40.0% | |
| ! | CTCCAGAAGACGTCAAATTT+TGG | - | chr7_3:32582926-32582945 | Msa1101660:intron | 40.0% |
| CAGACATTTCACAAGAGTTG+TGG | - | chr7_3:32583016-32583035 | Msa1101660:intron | 40.0% | |
| ATAGGAAGGTCTTCAATTCC+AGG | + | chr7_3:32583051-32583070 | None:intergenic | 40.0% | |
| CTATACAATGTCAATGGCAG+TGG | - | chr7_3:32583117-32583136 | Msa1101660:intron | 40.0% | |
| AGTGGTAAGTTCTCTCTGAA+AGG | - | chr7_3:32583135-32583154 | Msa1101660:intron | 40.0% | |
| AGACATCTGTTCATCCGAAA+GGG | + | chr7_3:32583367-32583386 | None:intergenic | 40.0% | |
| AAGACATCTGTTCATCCGAA+AGG | + | chr7_3:32583368-32583387 | None:intergenic | 40.0% | |
| ATTGGGAGATTTATCCCACT+AGG | + | chr7_3:32583483-32583502 | None:intergenic | 40.0% | |
| GTGGGATAAATCTCCCAATA+CGG | - | chr7_3:32583484-32583503 | Msa1101660:intron | 40.0% | |
| GATAAATCTCCCAATACGGT+GGG | - | chr7_3:32583488-32583507 | Msa1101660:intron | 40.0% | |
| ATAAATCTCCCAATACGGTG+GGG | - | chr7_3:32583489-32583508 | Msa1101660:intron | 40.0% | |
| AGAACAATCAGACCCATCAT+AGG | - | chr7_3:32583517-32583536 | Msa1101660:intron | 40.0% | |
| GAACAATCAGACCCATCATA+GGG | - | chr7_3:32583518-32583537 | Msa1101660:intron | 40.0% | |
| TCTACAACAGACCCTATGAT+GGG | + | chr7_3:32583532-32583551 | None:intergenic | 40.0% | |
| ATATATCTCCTGATACGGCA+TGG | - | chr7_3:32583559-32583578 | Msa1101660:intron | 40.0% | |
| ATAGCTATTGCGAAACTTCC+GGG | + | chr7_3:32584314-32584333 | None:intergenic | 40.0% | |
| GATAGCTATTGCGAAACTTC+CGG | + | chr7_3:32584315-32584334 | None:intergenic | 40.0% | |
| AGTTTCGCAATAGCTATCTG+AGG | - | chr7_3:32584317-32584336 | Msa1101660:intron | 40.0% | |
| CAATAGCTATCTGAGGATTC+AGG | - | chr7_3:32584324-32584343 | Msa1101660:intron | 40.0% | |
| ! | TGGTCTTTCAGGAACTTTTC+TGG | - | chr7_3:32584616-32584635 | Msa1101660:intron | 40.0% |
| ACCACCATTTGAACAGAATG+TGG | - | chr7_3:32584800-32584819 | Msa1101660:intron | 40.0% | |
| TGAGCCACATTCTGTTCAAA+TGG | + | chr7_3:32584807-32584826 | None:intergenic | 40.0% | |
| ! | TATTGGAAGTATGCGTTTGG+AGG | + | chr7_3:32584935-32584954 | None:intergenic | 40.0% |
| ! | TGGTATTGGAAGTATGCGTT+TGG | + | chr7_3:32584938-32584957 | None:intergenic | 40.0% |
| AGAGGGAGACAGATATGTAT+AGG | - | chr7_3:32585050-32585069 | Msa1101660:intron | 40.0% | |
| TGATCATGTCATGTCTACGA+AGG | + | chr7_3:32585236-32585255 | None:intergenic | 40.0% | |
| ! | GTGCTTTTGTTCCTAAAGCT+GGG | - | chr7_3:32585295-32585314 | Msa1101660:intron | 40.0% |
| ! | TGCTTTTGTTCCTAAAGCTG+GGG | - | chr7_3:32585296-32585315 | Msa1101660:intron | 40.0% |
| TGATTAAAGACCCCAGCTTT+AGG | + | chr7_3:32585309-32585328 | None:intergenic | 40.0% | |
| TGACTCGCATTTACATGTGT+AGG | - | chr7_3:32585406-32585425 | Msa1101660:intron | 40.0% | |
| CAGGGTTTAATGAAGGCAAA+TGG | + | chr7_3:32585484-32585503 | None:intergenic | 40.0% | |
| TTTGCCTTCATTAAACCCTG+TGG | - | chr7_3:32585484-32585503 | Msa1101660:intron | 40.0% | |
| ATGAAGCACAGACATCTCCA+CGG | - | chr7_3:32582648-32582667 | Msa1101660:CDS | 45.0% | |
| AGAAGAATACACCACAGAGG+GGG | - | chr7_3:32582680-32582699 | Msa1101660:CDS | 45.0% | |
| TTGTTAGGGCTCCTTGGAAT+TGG | - | chr7_3:32582882-32582901 | Msa1101660:intron | 45.0% | |
| GTTTCATCATCGAGCTCGAT+AGG | + | chr7_3:32583069-32583088 | None:intergenic | 45.0% | |
| TGATGAAACAACCCCTGTGA+AGG | - | chr7_3:32583080-32583099 | Msa1101660:intron | 45.0% | |
| AATCCATGCAAGCCTTCACA+GGG | + | chr7_3:32583095-32583114 | None:intergenic | 45.0% | |
| AAATCCATGCAAGCCTTCAC+AGG | + | chr7_3:32583096-32583115 | None:intergenic | 45.0% | |
| GAAGGATCAGGAAGAATGCT+CGG | - | chr7_3:32583278-32583297 | Msa1101660:intron | 45.0% | |
| GGATAAATCTCCCAATACGG+TGG | - | chr7_3:32583487-32583506 | Msa1101660:intron | 45.0% | |
| TCTATAGACCCCACCGTATT+GGG | + | chr7_3:32583500-32583519 | None:intergenic | 45.0% | |
| TTCTATAGACCCCACCGTAT+TGG | + | chr7_3:32583501-32583520 | None:intergenic | 45.0% | |
| GTCTACAACAGACCCTATGA+TGG | + | chr7_3:32583533-32583552 | None:intergenic | 45.0% | |
| ! | CTCCAACGAGGATATTTTCC+CGG | - | chr7_3:32584293-32584312 | Msa1101660:intron | 45.0% |
| TTCCGGGAAAATATCCTCGT+TGG | + | chr7_3:32584298-32584317 | None:intergenic | 45.0% | |
| GTGGTTCGCAGATTGCTTTA+AGG | - | chr7_3:32584491-32584510 | Msa1101660:intron | 45.0% | |
| GCCACATTCTGTTCAAATGG+TGG | + | chr7_3:32584804-32584823 | None:intergenic | 45.0% | |
| TATTTGTCTTCGTGGAGGCA+TGG | - | chr7_3:32584982-32585001 | Msa1101660:CDS | 45.0% | |
| ! | GATAAGGAGGTTTGACTCGA+TGG | - | chr7_3:32585004-32585023 | Msa1101660:intron | 45.0% |
| ! | GGTGCTTTTGTTCCTAAAGC+TGG | - | chr7_3:32585294-32585313 | Msa1101660:intron | 45.0% |
| GTCACCACAGGGTTTAATGA+AGG | + | chr7_3:32585491-32585510 | None:intergenic | 45.0% | |
| !! | AGTGAAAGAGAGTATCGACG+AGG | - | chr7_3:32585568-32585587 | Msa1101660:intron | 45.0% |
| !! | GTGAAAGAGAGTATCGACGA+GGG | - | chr7_3:32585569-32585588 | Msa1101660:intron | 45.0% |
| AAGAAGGTGGAAAGAATGGC+AGG | + | chr7_3:32585637-32585656 | None:intergenic | 45.0% | |
| !! | ATAAAATAATCTTATAATTA+TGG | - | chr7_3:32584596-32584615 | Msa1101660:intron | 5.0% |
| AAACTCTTCATCCCCCTCTG+TGG | + | chr7_3:32582694-32582713 | None:intergenic | 50.0% | |
| ! | GTGTCATTGTTAGGGCTCCT+TGG | - | chr7_3:32582876-32582895 | Msa1101660:intron | 50.0% |
| GGCTCCTTGGAATTGGCATA+GGG | - | chr7_3:32582889-32582908 | Msa1101660:intron | 50.0% | |
| TCCTTGGAATTGGCATAGGG+AGG | - | chr7_3:32582892-32582911 | Msa1101660:intron | 50.0% | |
| TCCTCCCTATGCCAATTCCA+AGG | + | chr7_3:32582896-32582915 | None:intergenic | 50.0% | |
| GAGTTGTGGAACGAAGTTCC+TGG | - | chr7_3:32583030-32583049 | Msa1101660:intron | 50.0% | |
| CATCATCGAGCTCGATAGGA+AGG | + | chr7_3:32583065-32583084 | None:intergenic | 50.0% | |
| ATCCATGCAAGCCTTCACAG+GGG | + | chr7_3:32583094-32583113 | None:intergenic | 50.0% | |
| CTTCTTCGCAAGCCAAGAGA+CGG | - | chr7_3:32583304-32583323 | Msa1101660:intron | 50.0% | |
| TCACTAGACCATGCCGTATC+AGG | + | chr7_3:32583570-32583589 | None:intergenic | 50.0% | |
| TGCTTCGTCTTCCAACTACG+AGG | - | chr7_3:32584449-32584468 | Msa1101660:intron | 50.0% | |
| CAACTACGAGGACCTTGAGT+CGG | - | chr7_3:32584461-32584480 | Msa1101660:intron | 50.0% | |
| ACCTTGAGTCGGCTGAAAAG+TGG | - | chr7_3:32584472-32584491 | Msa1101660:intron | 50.0% | |
| !! | ACCACTTTTCAGCCGACTCA+AGG | + | chr7_3:32584476-32584495 | None:intergenic | 50.0% |
| ! | TCTTCGTGGAGGCATGGATA+AGG | - | chr7_3:32584988-32585007 | Msa1101660:CDS | 50.0% |
| ATTAAACCCTGTGGTGACCG+TGG | - | chr7_3:32585493-32585512 | Msa1101660:intron | 50.0% | |
| CCTTCAGAGTGACATCTCCA+CGG | + | chr7_3:32585513-32585532 | None:intergenic | 50.0% | |
| GGCGAAGAAGGTGGAAAGAA+TGG | + | chr7_3:32585641-32585660 | None:intergenic | 50.0% | |
| GATTGAAGTGGAGGCGAAGA+AGG | + | chr7_3:32585653-32585672 | None:intergenic | 50.0% | |
| CACAGACATCTCCACGGTCA+TGG | - | chr7_3:32582654-32582673 | Msa1101660:CDS | 55.0% | |
| GGGCTCCTTGGAATTGGCAT+AGG | - | chr7_3:32582888-32582907 | Msa1101660:intron | 55.0% | |
| AACCCCTGTGAAGGCTTGCA+TGG | - | chr7_3:32583089-32583108 | Msa1101660:intron | 55.0% | |
| CTGTAGCATCCTCCGTCTCT+TGG | + | chr7_3:32583319-32583338 | None:intergenic | 55.0% | |
| CGACTCAAGGTCCTCGTAGT+TGG | + | chr7_3:32584463-32584482 | None:intergenic | 55.0% | |
| ! | TCGTGGAGGCATGGATAAGG+AGG | - | chr7_3:32584991-32585010 | Msa1101660:CDS | 55.0% |
| ACATCTCCACGGTCACCACA+GGG | + | chr7_3:32585502-32585521 | None:intergenic | 55.0% | |
| CCGTGGAGATGTCACTCTGA+AGG | - | chr7_3:32585510-32585529 | Msa1101660:intron | 55.0% | |
| !! | AGAGAGTATCGACGAGGGCA+TGG | - | chr7_3:32585574-32585593 | Msa1101660:intron | 55.0% |
| AGGTGGAAAGAATGGCAGGC+CGG | + | chr7_3:32585633-32585652 | None:intergenic | 55.0% | |
| TGAAGTGGAGGCGAAGAAGG+TGG | + | chr7_3:32585650-32585669 | None:intergenic | 55.0% | |
| CTTCGCAAGCCAAGAGACGG+AGG | - | chr7_3:32583307-32583326 | Msa1101660:intron | 60.0% | |
| GACATCTCCACGGTCACCAC+AGG | + | chr7_3:32585503-32585522 | None:intergenic | 60.0% | |
| !! | GGCGACGGACTACTCCAACG+AGG | - | chr7_3:32584281-32584300 | Msa1101660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 32582602 | 32585678 | 32582602 | ID=Msa1101660;Name=Msa1101660 |
| chr7_3 | mRNA | 32582602 | 32585678 | 32582602 | ID=Msa1101660-mRNA-1;Parent=Msa1101660;Name=Msa1101660-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.85|1|1|7|0|262 |
| chr7_3 | exon | 32585611 | 32585678 | 32585611 | ID=Msa1101660-mRNA-1:exon:7069;Parent=Msa1101660-mRNA-1 |
| chr7_3 | exon | 32585333 | 32585391 | 32585333 | ID=Msa1101660-mRNA-1:exon:7068;Parent=Msa1101660-mRNA-1 |
| chr7_3 | exon | 32585142 | 32585261 | 32585142 | ID=Msa1101660-mRNA-1:exon:7067;Parent=Msa1101660-mRNA-1 |
| chr7_3 | exon | 32584869 | 32585018 | 32584869 | ID=Msa1101660-mRNA-1:exon:7066;Parent=Msa1101660-mRNA-1 |
| chr7_3 | exon | 32583736 | 32583835 | 32583736 | ID=Msa1101660-mRNA-1:exon:7065;Parent=Msa1101660-mRNA-1 |
| chr7_3 | exon | 32583613 | 32583653 | 32583613 | ID=Msa1101660-mRNA-1:exon:7064;Parent=Msa1101660-mRNA-1 |
| chr7_3 | exon | 32582602 | 32582852 | 32582602 | ID=Msa1101660-mRNA-1:exon:7063;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32585611 | 32585678 | 32585611 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32585333 | 32585391 | 32585333 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32585142 | 32585261 | 32585142 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32584869 | 32585018 | 32584869 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32583736 | 32583835 | 32583736 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32583613 | 32583653 | 32583613 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| chr7_3 | CDS | 32582602 | 32582852 | 32582602 | ID=Msa1101660-mRNA-1:cds;Parent=Msa1101660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
