AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253510 MtrunA17_Chr7g0236031 67.730 282 39 5 71 305 12 288 9.36e-122 351
Msa1253510 MtrunA17_Chr8g0340041 45.528 246 85 7 72 271 10 252 5.59e-59 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253510 AT5G48720.2 37.398 246 101 9 73 271 12 251 1.36e-32 122
Msa1253510 AT5G48720.4 37.398 246 101 9 73 271 12 251 1.36e-32 122
Msa1253510 AT5G48720.1 38.318 214 82 6 103 271 9 217 1.88e-31 119
Msa1253510 AT5G48720.3 38.318 214 82 6 103 271 9 217 1.88e-31 119

Find 76 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCAAAATTTGACGTCTTC+TGG 0.204285 8_2:+50952668 None:intergenic
CTCCAGAAGACGTCAAATTT+TGG 0.204893 8_2:-50952670 Msa1253510:intron
GAAATAAATAAGCGCATTTA+TGG 0.237911 8_2:-50950063 Msa1253510:CDS
CAATAGCTATCTGAGGATTC+AGG 0.269757 8_2:-50951270 Msa1253510:intron
AGGGTTAGAGATTTAATATT+GGG 0.309039 8_2:-50953586 Msa1253510:CDS
ACCCTTCTTCAGATCAATCT+AGG 0.324122 8_2:-50953606 None:intergenic
TTTAGAATCGTACGGATTAT+CGG 0.334187 8_2:+50951060 None:intergenic
TAGGGTTAGAGATTTAATAT+TGG 0.336097 8_2:-50953587 Msa1253510:CDS
GTGGTTCGCAGATTGCTTTA+AGG 0.364219 8_2:-50951104 Msa1253510:CDS
TTGTTAGGGCTCCTTGGAAT+TGG 0.379300 8_2:-50952714 Msa1253510:intron
ATAGGAAGGTCTTCAATTCC+AGG 0.392770 8_2:+50952548 None:intergenic
TCTATTATGAAAACACCAAC+AGG 0.395143 8_2:-50950159 Msa1253510:CDS
GATTGAAGTGGAGGCGAAGA+AGG 0.426338 8_2:+50949945 None:intergenic
GAATAGGAATCATTCCCTTT+CGG 0.427034 8_2:-50952246 Msa1253510:CDS
GAACCTTAGGTTTGAGAGAA+AGG 0.435057 8_2:+50953410 None:intergenic
GAGCTGTGGAACGAAGTTCC+TGG 0.439400 8_2:-50952566 Msa1253510:CDS
TTAGAATCGTACGGATTATC+GGG 0.445115 8_2:+50951061 None:intergenic
AGAGAAAGGAGCGTTGATGA+AGG 0.449007 8_2:+50953424 None:intergenic
AATCGCCATCACCGTAGATC+TGG 0.457839 8_2:-50953520 Msa1253510:CDS
CTGTAGCATCCTCCGTCTCT+TGG 0.464718 8_2:+50952280 None:intergenic
AAATCCATGCAAGCCTTCAC+AGG 0.473588 8_2:+50952503 None:intergenic
GTGTCATTGTTAGGGCTCCT+TGG 0.483894 8_2:-50952720 Msa1253510:intron
GGCGATTCAACGGTGATCTA+CGG 0.484380 8_2:+50953536 None:intergenic
GACATCTCCACGGTCACCAC+AGG 0.488010 8_2:+50950095 None:intergenic
CGACTCAAGGTCCTCGTAGT+TGG 0.490317 8_2:+50951135 None:intergenic
CCCTTCTTCAGATCAATCTA+GGG 0.492398 8_2:-50953605 None:intergenic
TGAAGGATGATGAAGGTTGA+TGG 0.492947 8_2:+50953441 None:intergenic
ACCTTGAGTCGGCTGAAAAG+TGG 0.500363 8_2:-50951123 Msa1253510:CDS
AGAGAGTATCGACGAGGGCA+TGG 0.502831 8_2:-50950021 Msa1253510:CDS
CTATACAATGTCAATGGCAG+TGG 0.503910 8_2:-50952479 Msa1253510:intron
AACCCCTGTGAAGGCTTGCA+TGG 0.507351 8_2:-50952507 Msa1253510:CDS
GGGCTCCTTGGAATTGGCAT+AGG 0.510063 8_2:-50952708 Msa1253510:CDS
CAGGGTTTAATGAAGGCAAA+TGG 0.514467 8_2:+50950114 None:intergenic
AAATTATATACAGAAGGATC+AGG 0.515910 8_2:-50952330 Msa1253510:CDS
TACAGTTCAACAATCAGAAT+AGG 0.521223 8_2:-50952262 Msa1253510:CDS
GTTTCATCATCGAGCTCGAT+AGG 0.522563 8_2:+50952530 None:intergenic
GGCTCCTTGGAATTGGCATA+GGG 0.526377 8_2:-50952707 Msa1253510:CDS
AACAGGGTTATCTTCTTCTG+TGG 0.537338 8_2:-50950142 Msa1253510:CDS
AGAATCAAATTATATACAGA+AGG 0.539473 8_2:-50952336 Msa1253510:CDS
TGAAGTGGAGGCGAAGAAGG+TGG 0.540709 8_2:+50949948 None:intergenic
TGGAATTGGCATAGGGAGGA+AGG 0.544268 8_2:-50952700 Msa1253510:CDS
AGACATCTGTTCATCCGAAA+GGG 0.550633 8_2:+50952232 None:intergenic
GCTCCTTTCTCTCAAACCTA+AGG 0.555124 8_2:-50953413 Msa1253510:intron
CTACGGTGATGGCGATTCAA+CGG 0.557816 8_2:+50953526 None:intergenic
GATGTTCATGTTGATACTAC+TGG 0.558777 8_2:-50950949 Msa1253510:intron
GAAGGATCAGGAAGAATGCT+CGG 0.568679 8_2:-50952318 Msa1253510:CDS
AAGACATCTGTTCATCCGAA+AGG 0.569782 8_2:+50952231 None:intergenic
TTTAATGAAGGCAAATGGAT+AGG 0.570098 8_2:+50950119 None:intergenic
CATCATCGAGCTCGATAGGA+AGG 0.579526 8_2:+50952534 None:intergenic
GTCACCACAGGGTTTAATGA+AGG 0.583162 8_2:+50950107 None:intergenic
AATCCATGCAAGCCTTCACA+GGG 0.585902 8_2:+50952504 None:intergenic
TGATGAAACAACCCCTGTGA+AGG 0.592823 8_2:-50952516 Msa1253510:CDS
AGAAATGTGAACCAGATCTA+CGG 0.606340 8_2:+50953509 None:intergenic
CCGTGGAGATGTCACTCTGA+AGG 0.608363 8_2:-50950085 Msa1253510:CDS
CAACTACGAGGACCTTGAGT+CGG 0.610167 8_2:-50951134 Msa1253510:CDS
CTTCTTCGCAAGCCAAGAGA+CGG 0.610238 8_2:-50952292 Msa1253510:CDS
GTGAACCAGATCTACGGTGA+TGG 0.612065 8_2:+50953515 None:intergenic
TCCTCCCTATGCCAATTCCA+AGG 0.613237 8_2:+50952703 None:intergenic
ATTAAACCCTGTGGTGACCG+TGG 0.617665 8_2:-50950102 Msa1253510:CDS
TCAGAGCGCTAGATCTAGTG+AGG 0.619939 8_2:+50953485 None:intergenic
TCCTTGGAATTGGCATAGGG+AGG 0.625515 8_2:-50952704 Msa1253510:CDS
TTTGCCTTCATTAAACCCTG+TGG 0.639784 8_2:-50950111 Msa1253510:CDS
CAGACATTTCACAAGAGCTG+TGG 0.648155 8_2:-50952580 Msa1253510:CDS
AGTTTCGCAATAGCTATCTG+AGG 0.652765 8_2:-50951277 Msa1253510:intron
ACAGAAGAAGATAACCCTGT+TGG 0.653663 8_2:+50950144 None:intergenic
CCTTCAGAGTGACATCTCCA+CGG 0.658194 8_2:+50950085 None:intergenic
CTTCGCAAGCCAAGAGACGG+AGG 0.661156 8_2:-50952289 Msa1253510:CDS
ATGCTAGTGGATTGAAGTGG+AGG 0.664187 8_2:+50949936 None:intergenic
ACATCTCCACGGTCACCACA+GGG 0.674318 8_2:+50950096 None:intergenic
CTGATGCTAGTGGATTGAAG+TGG 0.679667 8_2:+50949933 None:intergenic
CTATTATGAAAACACCAACA+GGG 0.710635 8_2:-50950158 Msa1253510:CDS
GTGAAAGAGAGTATCGACGA+GGG 0.719084 8_2:-50950026 Msa1253510:CDS
GCGTTGATGAAGGATGATGA+AGG 0.719612 8_2:+50953434 None:intergenic
TGCTTCGTCTTCCAACTACG+AGG 0.733802 8_2:-50951146 Msa1253510:CDS
AGTGAAAGAGAGTATCGACG+AGG 0.756352 8_2:-50950027 Msa1253510:CDS
ATCCATGCAAGCCTTCACAG+GGG 0.784307 8_2:+50952505 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGATTTTTTTTAATTTTTTT+CGG - chr8_2:50950199-50950218 Msa1253510:intron 10.0%
!!! AATTCATTTTTACATTTATT+AGG - chr8_2:50950445-50950464 Msa1253510:intron 10.0%
!!! ATTCATTTTTACATTTATTA+GGG - chr8_2:50950446-50950465 Msa1253510:intron 10.0%
!! AAAAATTATGAAGAAAAAAA+AGG + chr8_2:50952657-50952676 None:intergenic 10.0%
!!! GTATATTTATTGTGTTATTA+TGG - chr8_2:50950501-50950520 Msa1253510:intron 15.0%
!!! AGTGATTAATTTTAATTTGA+CGG - chr8_2:50950690-50950709 Msa1253510:intron 15.0%
!! ATAATAAACATATATTCAGA+TGG + chr8_2:50951134-50951153 None:intergenic 15.0%
!! GAATATATGTTTATTATTTG+TGG - chr8_2:50951137-50951156 Msa1253510:CDS 15.0%
!! ATGCATTTCTTTAAATTAAA+AGG + chr8_2:50951175-50951194 None:intergenic 15.0%
!! ATAAAAAATAGAAATCTAAC+AGG + chr8_2:50951663-50951682 None:intergenic 15.0%
!!! ATTTTCTTAAATGAAATGAT+TGG - chr8_2:50951696-50951715 Msa1253510:intron 15.0%
!! TAAAAGAGATTTATAGTATA+TGG - chr8_2:50953021-50953040 Msa1253510:intron 15.0%
!! GAAAAATTGAGAGAAAAAAA+AGG + chr8_2:50950180-50950199 None:intergenic 20.0%
!! TACATGTCAATAATTAGATA+AGG + chr8_2:50951111-50951130 None:intergenic 20.0%
!! AGAATCAAATTATATACAGA+AGG - chr8_2:50951198-50951217 Msa1253510:intron 20.0%
!! CTATCTATACTTTATGATAT+GGG + chr8_2:50951388-50951407 None:intergenic 20.0%
!! TATCATTATGTTCATGTATA+TGG - chr8_2:50951582-50951601 Msa1253510:intron 20.0%
!! ACTAAAAGATAGACAAAATA+TGG + chr8_2:50951636-50951655 None:intergenic 20.0%
!! TACAAATCATGAAAATTTGA+AGG + chr8_2:50952035-50952054 None:intergenic 20.0%
!! ACTTGTATTATCATTATAAG+TGG + chr8_2:50952071-50952090 None:intergenic 20.0%
!!! GTGACTTTTGATAAATTATT+TGG - chr8_2:50952321-50952340 Msa1253510:CDS 20.0%
!! AAACAACAAAAGGATAAAAA+AGG + chr8_2:50952816-50952835 None:intergenic 20.0%
!! AGTGAAAAATAAACAACAAA+AGG + chr8_2:50952826-50952845 None:intergenic 20.0%
!!! TTGTTTTAATTCTAGTTAAG+TGG + chr8_2:50952897-50952916 None:intergenic 20.0%
!!! TTTTAGTAGATAGTAGTTAA+TGG - chr8_2:50953311-50953330 Msa1253510:intron 20.0%
! TAGGGTTAGAGATTTAATAT+TGG - chr8_2:50949947-50949966 Msa1253510:CDS 25.0%
! AGGGTTAGAGATTTAATATT+GGG - chr8_2:50949948-50949967 Msa1253510:CDS 25.0%
!!! CTCATTTTAGTTTTTTCATG+CGG - chr8_2:50950311-50950330 Msa1253510:intron 25.0%
! GAAAATACTCAAGTTATATG+GGG + chr8_2:50950772-50950791 None:intergenic 25.0%
! CGAAAATACTCAAGTTATAT+GGG + chr8_2:50950773-50950792 None:intergenic 25.0%
! TCGAAAATACTCAAGTTATA+TGG + chr8_2:50950774-50950793 None:intergenic 25.0%
!! GATTTTCTATACAATGTCAA+TGG - chr8_2:50951049-50951068 Msa1253510:intron 25.0%
! AAATTATATACAGAAGGATC+AGG - chr8_2:50951204-50951223 Msa1253510:intron 25.0%
! GCTATCTATACTTTATGATA+TGG + chr8_2:50951389-50951408 None:intergenic 25.0%
! ATCTTATATATCTCCTGATA+CGG - chr8_2:50951492-50951511 Msa1253510:intron 25.0%
! GTTAATGTCTTGTATTGTAT+TGG - chr8_2:50951738-50951757 Msa1253510:intron 25.0%
!! CAATAACTGTAATTTAGAAC+AGG - chr8_2:50951808-50951827 Msa1253510:intron 25.0%
! TACAAATGTTTAAGTGAAAC+AGG + chr8_2:50951847-50951866 None:intergenic 25.0%
!! AAACATTTGTAATGATAACG+AGG - chr8_2:50951856-50951875 Msa1253510:intron 25.0%
!!! TGTTATTTTCAAATCTGTGA+TGG - chr8_2:50951879-50951898 Msa1253510:intron 25.0%
! AAATAATTACTACGAAGGAT+GGG + chr8_2:50951912-50951931 None:intergenic 25.0%
! ATCACAAATAATTACTACGA+AGG + chr8_2:50951917-50951936 None:intergenic 25.0%
! TTTGACACACAAATGTTAAA+AGG + chr8_2:50952095-50952114 None:intergenic 25.0%
! TTTCTAATGCATATTCCATT+GGG + chr8_2:50952367-50952386 None:intergenic 25.0%
!! TTTTCTAATGCATATTCCAT+TGG + chr8_2:50952368-50952387 None:intergenic 25.0%
! TCTTATAATTATGCTCTTTC+AGG - chr8_2:50952544-50952563 Msa1253510:CDS 25.0%
! TCACTTGATATTGAATAAAG+TGG - chr8_2:50952841-50952860 Msa1253510:intron 25.0%
!! TAATTCTAGTTAAGTGGTAT+TGG + chr8_2:50952891-50952910 None:intergenic 25.0%
! TGACTTTAATAATACTTGAC+AGG - chr8_2:50953052-50953071 Msa1253510:intron 25.0%
! AGATATTCTTTAGTGAGAAA+AGG - chr8_2:50953080-50953099 Msa1253510:intron 25.0%
!! GTTTTCATACTTTACTAAAC+TGG - chr8_2:50953212-50953231 Msa1253510:intron 25.0%
! GAAATAAATAAGCGCATTTA+TGG - chr8_2:50953471-50953490 Msa1253510:CDS 25.0%
!! CTGATAGTACATTTTTAAAC+CGG - chr8_2:50953550-50953569 Msa1253510:CDS 25.0%
CGCATGAAAAAACTAAAATG+AGG + chr8_2:50950313-50950332 None:intergenic 30.0%
!!! TTAGTTTTTTCATGCGGATT+AGG - chr8_2:50950317-50950336 Msa1253510:intron 30.0%
!!! TAGTTTTTTCATGCGGATTA+GGG - chr8_2:50950318-50950337 Msa1253510:intron 30.0%
TTGTATTTCATGCATGTTTG+TGG - chr8_2:50950473-50950492 Msa1253510:intron 30.0%
! TGTGTTATTATGGTGATTTG+TGG - chr8_2:50950511-50950530 Msa1253510:intron 30.0%
! TATTATGGTGATTTGTGGTT+AGG - chr8_2:50950516-50950535 Msa1253510:intron 30.0%
! CTGATATGCTTTTACAAAGT+CGG - chr8_2:50950547-50950566 Msa1253510:intron 30.0%
! TGATATGCTTTTACAAAGTC+GGG - chr8_2:50950548-50950567 Msa1253510:intron 30.0%
! TTTCTGAATGTGTCATTGTT+AGG - chr8_2:50950805-50950824 Msa1253510:intron 30.0%
! TTCTGAATGTGTCATTGTTA+GGG - chr8_2:50950806-50950825 Msa1253510:intron 30.0%
AAATGTCTGATCAAACAACT+AGG + chr8_2:50950943-50950962 None:intergenic 30.0%
TACAGTTCAACAATCAGAAT+AGG - chr8_2:50951272-50951291 Msa1253510:intron 30.0%
ATAGCATAAACATACCTAGT+GGG - chr8_2:50951404-50951423 Msa1253510:intron 30.0%
! AATGATTGGTTCAACTTTAG+TGG - chr8_2:50951710-50951729 Msa1253510:intron 30.0%
CAAATAATTACTACGAAGGA+TGG + chr8_2:50951913-50951932 None:intergenic 30.0%
CACATTATATGTAGGACTTT+AGG + chr8_2:50951962-50951981 None:intergenic 30.0%
GGATACTTCACATTATATGT+AGG + chr8_2:50951970-50951989 None:intergenic 30.0%
ATGGATCAACTTAAAACAGA+AGG + chr8_2:50951991-50952010 None:intergenic 30.0%
!!! TGTTTTAAGTTGATCCATAG+TGG - chr8_2:50951993-50952012 Msa1253510:intron 30.0%
TCATAAAAGAGTAACCACTA+TGG + chr8_2:50952010-50952029 None:intergenic 30.0%
GACTGTTTCATTATGCATAT+AGG - chr8_2:50952200-50952219 Msa1253510:intron 30.0%
! TATTTCTATTCTTTCCCCAA+TGG - chr8_2:50952349-50952368 Msa1253510:intron 30.0%
TTCTAATGCATATTCCATTG+GGG + chr8_2:50952366-50952385 None:intergenic 30.0%
! TTTAGAATCGTACGGATTAT+CGG + chr8_2:50952477-50952496 None:intergenic 30.0%
AACCACTGCAAATATAATTG+TGG - chr8_2:50952497-50952516 Msa1253510:CDS 30.0%
TAAACATTAGAAGACAACAG+TGG + chr8_2:50952631-50952650 None:intergenic 30.0%
! CCTTTGAAGACAATTTATCT+GGG + chr8_2:50952788-50952807 None:intergenic 30.0%
! ACCTTTGAAGACAATTTATC+TGG + chr8_2:50952789-50952808 None:intergenic 30.0%
ACAAGTAATATTTGTCTTCG+TGG - chr8_2:50952913-50952932 Msa1253510:intron 30.0%
CTACTATCTACTAAAACTTC+TGG + chr8_2:50953307-50953326 None:intergenic 30.0%
TCTATTATGAAAACACCAAC+AGG - chr8_2:50953375-50953394 Msa1253510:intron 30.0%
CTATTATGAAAACACCAACA+GGG - chr8_2:50953376-50953395 Msa1253510:intron 30.0%
TTTAATGAAGGCAAATGGAT+AGG + chr8_2:50953418-50953437 None:intergenic 30.0%
AGAAATGTGAACCAGATCTA+CGG + chr8_2:50950028-50950047 None:intergenic 35.0%
! CGTAGTTGTTGATTGTATTG+TGG - chr8_2:50950250-50950269 Msa1253510:intron 35.0%
TGGAGTGAGAAATTTGTGTT+AGG - chr8_2:50950270-50950289 Msa1253510:intron 35.0%
AATTTGAGAGCGATTTACTG+TGG - chr8_2:50950380-50950399 Msa1253510:intron 35.0%
!!! GTTCGTTTTTTCTTTGACTG+TGG - chr8_2:50950408-50950427 Msa1253510:intron 35.0%
AAAAGAAGAATACACCACAG+AGG - chr8_2:50950615-50950634 Msa1253510:intron 35.0%
AAAGAAGAATACACCACAGA+GGG - chr8_2:50950616-50950635 Msa1253510:intron 35.0%
TACCAAAATTTGACGTCTTC+TGG + chr8_2:50950869-50950888 None:intergenic 35.0%
GAATAGGAATCATTCCCTTT+CGG - chr8_2:50951288-50951307 Msa1253510:intron 35.0%
GATAGCATAAACATACCTAG+TGG - chr8_2:50951403-50951422 Msa1253510:intron 35.0%
!! AGTGAAGAGCTTTGAAAAAG+TGG + chr8_2:50951779-50951798 None:intergenic 35.0%
TTCATTATGCATATAGGCGA+CGG - chr8_2:50952206-50952225 Msa1253510:intron 35.0%
TCAAAGCTAAATCTTGCATG+AGG + chr8_2:50952294-50952313 None:intergenic 35.0%
! TTAGAATCGTACGGATTATC+GGG + chr8_2:50952476-50952495 None:intergenic 35.0%
!!! CAGTGGTTTTTAGAATCGTA+CGG + chr8_2:50952485-50952504 None:intergenic 35.0%
TGCCACAATTATATTTGCAG+TGG + chr8_2:50952502-50952521 None:intergenic 35.0%
GATGTTCATGTTGATACTAC+TGG - chr8_2:50952585-50952604 Msa1253510:intron 35.0%
CAATTAAGTTCAACGTACAG+CGG + chr8_2:50952681-50952700 None:intergenic 35.0%
CCCAGATAAATTGTCTTCAA+AGG - chr8_2:50952785-50952804 Msa1253510:intron 35.0%
AGTAATATTTGTCTTCGTGG+AGG - chr8_2:50952916-50952935 Msa1253510:intron 35.0%
AGTCTAAAAGTTTGAGCTAG+AGG - chr8_2:50952971-50952990 Msa1253510:intron 35.0%
GTCTAAAAGTTTGAGCTAGA+GGG - chr8_2:50952972-50952991 Msa1253510:intron 35.0%
CTACTAAAACTTCTGGCATA+AGG + chr8_2:50953300-50953319 None:intergenic 35.0%
TGAAGGATGATGAAGGTTGA+TGG + chr8_2:50950096-50950115 None:intergenic 40.0%
GAACCTTAGGTTTGAGAGAA+AGG + chr8_2:50950127-50950146 None:intergenic 40.0%
! GAAGAAGAAGTACGAACCTT+AGG + chr8_2:50950140-50950159 None:intergenic 40.0%
!! TTTCATGCGGATTAGGGATT+TGG - chr8_2:50950324-50950343 Msa1253510:intron 40.0%
!! TTCATGCGGATTAGGGATTT+GGG - chr8_2:50950325-50950344 Msa1253510:intron 40.0%
! AGAGCGATTTACTGTGGTTT+TGG - chr8_2:50950386-50950405 Msa1253510:intron 40.0%
! ATTCTTCTTTTCCATGACCG+TGG + chr8_2:50950606-50950625 None:intergenic 40.0%
AAGAAGAATACACCACAGAG+GGG - chr8_2:50950617-50950636 Msa1253510:intron 40.0%
TCTCGTTTCTCATCACTAGT+TGG - chr8_2:50950727-50950746 Msa1253510:intron 40.0%
! CTCCAGAAGACGTCAAATTT+TGG - chr8_2:50950864-50950883 Msa1253510:intron 40.0%
ATAGGAAGGTCTTCAATTCC+AGG + chr8_2:50950989-50951008 None:intergenic 40.0%
CTATACAATGTCAATGGCAG+TGG - chr8_2:50951055-50951074 Msa1253510:intron 40.0%
AGTGGTAAGTTCTCTCTGAA+AGG - chr8_2:50951073-50951092 Msa1253510:CDS 40.0%
AGACATCTGTTCATCCGAAA+GGG + chr8_2:50951305-50951324 None:intergenic 40.0%
AAGACATCTGTTCATCCGAA+AGG + chr8_2:50951306-50951325 None:intergenic 40.0%
ATTGGGAGATTTATCCCACT+AGG + chr8_2:50951421-50951440 None:intergenic 40.0%
GTGGGATAAATCTCCCAATA+CGG - chr8_2:50951422-50951441 Msa1253510:intron 40.0%
GATAAATCTCCCAATACGGT+GGG - chr8_2:50951426-50951445 Msa1253510:intron 40.0%
ATAAATCTCCCAATACGGTG+GGG - chr8_2:50951427-50951446 Msa1253510:intron 40.0%
TAGAACAATCAGACCCATCA+TGG - chr8_2:50951454-50951473 Msa1253510:intron 40.0%
AGAACAATCAGACCCATCAT+GGG - chr8_2:50951455-50951474 Msa1253510:intron 40.0%
ATATATCTCCTGATACGGCA+TGG - chr8_2:50951497-50951516 Msa1253510:intron 40.0%
ATAGCTATTGCGAAACTTCC+GGG + chr8_2:50952254-50952273 None:intergenic 40.0%
GATAGCTATTGCGAAACTTC+CGG + chr8_2:50952255-50952274 None:intergenic 40.0%
AGTTTCGCAATAGCTATCTG+AGG - chr8_2:50952257-50952276 Msa1253510:CDS 40.0%
CAATAGCTATCTGAGGATTC+AGG - chr8_2:50952264-50952283 Msa1253510:CDS 40.0%
! TGCTCTTTCAGGAACTTTTC+TGG - chr8_2:50952555-50952574 Msa1253510:CDS 40.0%
ACCACCATTTGAACAGAATG+TGG - chr8_2:50952739-50952758 Msa1253510:intron 40.0%
TGAGCCACATTCTGTTCAAA+TGG + chr8_2:50952746-50952765 None:intergenic 40.0%
! TATTGGAAGTATGCGTTTGG+AGG + chr8_2:50952874-50952893 None:intergenic 40.0%
! TGGTATTGGAAGTATGCGTT+TGG + chr8_2:50952877-50952896 None:intergenic 40.0%
AGAGGGAGACAGATATGTAT+AGG - chr8_2:50952989-50953008 Msa1253510:intron 40.0%
TGATCATGTCATGTCTACGA+AGG + chr8_2:50953175-50953194 None:intergenic 40.0%
! GTGCTTTTGTTCCTAAAGCT+GGG - chr8_2:50953234-50953253 Msa1253510:intron 40.0%
! TGCTTTTGTTCCTAAAGCTG+GGG - chr8_2:50953235-50953254 Msa1253510:intron 40.0%
TGATTAAAGACCCCAGCTTT+AGG + chr8_2:50953248-50953267 None:intergenic 40.0%
TGACTCGCATTTACATGTGT+AGG - chr8_2:50953345-50953364 Msa1253510:intron 40.0%
ACAGAAGAAGATAACCCTGT+TGG + chr8_2:50953393-50953412 None:intergenic 40.0%
AACAGGGTTATCTTCTTCTG+TGG - chr8_2:50953392-50953411 Msa1253510:intron 40.0%
CAGGGTTTAATGAAGGCAAA+TGG + chr8_2:50953423-50953442 None:intergenic 40.0%
TTTGCCTTCATTAAACCCTG+TGG - chr8_2:50953423-50953442 Msa1253510:CDS 40.0%
AAGAAGGTGGAAAAAATGGC+AGG + chr8_2:50953576-50953595 None:intergenic 40.0%
! GCGTTGATGAAGGATGATGA+AGG + chr8_2:50950103-50950122 None:intergenic 45.0%
!! AGAGAAAGGAGCGTTGATGA+AGG + chr8_2:50950113-50950132 None:intergenic 45.0%
GCTCCTTTCTCTCAAACCTA+AGG - chr8_2:50950121-50950140 Msa1253510:CDS 45.0%
!! TCATGCGGATTAGGGATTTG+GGG - chr8_2:50950326-50950345 Msa1253510:intron 45.0%
! TGGGGAAGTTCGAGTAGTTT+TGG - chr8_2:50950344-50950363 Msa1253510:intron 45.0%
ATGAAGCACAGACATCTCCA+CGG - chr8_2:50950586-50950605 Msa1253510:intron 45.0%
AGAAGAATACACCACAGAGG+GGG - chr8_2:50950618-50950637 Msa1253510:intron 45.0%
AGTTATATGGGGAGTGACTC+AGG + chr8_2:50950761-50950780 None:intergenic 45.0%
TTGTTAGGGCTCCTTGGAAT+TGG - chr8_2:50950820-50950839 Msa1253510:intron 45.0%
CAGACATTTCACAAGAGCTG+TGG - chr8_2:50950954-50950973 Msa1253510:CDS 45.0%
GTTTCATCATCGAGCTCGAT+AGG + chr8_2:50951007-50951026 None:intergenic 45.0%
TGATGAAACAACCCCTGTGA+AGG - chr8_2:50951018-50951037 Msa1253510:intron 45.0%
AATCCATGCAAGCCTTCACA+GGG + chr8_2:50951033-50951052 None:intergenic 45.0%
AAATCCATGCAAGCCTTCAC+AGG + chr8_2:50951034-50951053 None:intergenic 45.0%
GAAGGATCAGGAAGAATGCT+CGG - chr8_2:50951216-50951235 Msa1253510:intron 45.0%
GGATAAATCTCCCAATACGG+TGG - chr8_2:50951425-50951444 Msa1253510:intron 45.0%
TCTATAGACCCCACCGTATT+GGG + chr8_2:50951438-50951457 None:intergenic 45.0%
TTCTATAGACCCCACCGTAT+TGG + chr8_2:50951439-50951458 None:intergenic 45.0%
GAACAATCAGACCCATCATG+GGG - chr8_2:50951456-50951475 Msa1253510:intron 45.0%
TCTACAACAGACCCCATGAT+GGG + chr8_2:50951470-50951489 None:intergenic 45.0%
! CTCCAACGAGGATATTTTCC+CGG - chr8_2:50952233-50952252 Msa1253510:CDS 45.0%
TTCCGGGAAAATATCCTCGT+TGG + chr8_2:50952238-50952257 None:intergenic 45.0%
GTGGTTCGCAGATTGCTTTA+AGG - chr8_2:50952430-50952449 Msa1253510:intron 45.0%
GCCACATTCTGTTCAAATGG+TGG + chr8_2:50952743-50952762 None:intergenic 45.0%
TATTTGTCTTCGTGGAGGCA+TGG - chr8_2:50952921-50952940 Msa1253510:intron 45.0%
! GATAAGGAGGTTTGACTCGA+TGG - chr8_2:50952943-50952962 Msa1253510:intron 45.0%
! GGTGCTTTTGTTCCTAAAGC+TGG - chr8_2:50953233-50953252 Msa1253510:intron 45.0%
GTCACCACAGGGTTTAATGA+AGG + chr8_2:50953430-50953449 None:intergenic 45.0%
!! AGTGAAAGAGAGTATCGACG+AGG - chr8_2:50953507-50953526 Msa1253510:CDS 45.0%
!! GTGAAAGAGAGTATCGACGA+GGG - chr8_2:50953508-50953527 Msa1253510:CDS 45.0%
GGCGAAGAAGGTGGAAAAAA+TGG + chr8_2:50953580-50953599 None:intergenic 45.0%
GGCGATTCAACGGTGATCTA+CGG + chr8_2:50950001-50950020 None:intergenic 50.0%
! CTACGGTGATGGCGATTCAA+CGG + chr8_2:50950011-50950030 None:intergenic 50.0%
AATCGCCATCACCGTAGATC+TGG - chr8_2:50950014-50950033 Msa1253510:CDS 50.0%
GTGAACCAGATCTACGGTGA+TGG + chr8_2:50950022-50950041 None:intergenic 50.0%
! TCAGAGCGCTAGATCTAGTG+AGG + chr8_2:50950052-50950071 None:intergenic 50.0%
AAACTCTTCATCCCCCTCTG+TGG + chr8_2:50950632-50950651 None:intergenic 50.0%
! GTGTCATTGTTAGGGCTCCT+TGG - chr8_2:50950814-50950833 Msa1253510:intron 50.0%
GGCTCCTTGGAATTGGCATA+GGG - chr8_2:50950827-50950846 Msa1253510:intron 50.0%
TCCTTGGAATTGGCATAGGG+AGG - chr8_2:50950830-50950849 Msa1253510:intron 50.0%
TCCTCCCTATGCCAATTCCA+AGG + chr8_2:50950834-50950853 None:intergenic 50.0%
TGGAATTGGCATAGGGAGGA+AGG - chr8_2:50950834-50950853 Msa1253510:intron 50.0%
CATCATCGAGCTCGATAGGA+AGG + chr8_2:50951003-50951022 None:intergenic 50.0%
ATCCATGCAAGCCTTCACAG+GGG + chr8_2:50951032-50951051 None:intergenic 50.0%
CTTCTTCGCAAGCCAAGAGA+CGG - chr8_2:50951242-50951261 Msa1253510:intron 50.0%
GTCTACAACAGACCCCATGA+TGG + chr8_2:50951471-50951490 None:intergenic 50.0%
TCACTAGACCATGCCGTATC+AGG + chr8_2:50951508-50951527 None:intergenic 50.0%
TGCTTCGTCTTCCAACTACG+AGG - chr8_2:50952388-50952407 Msa1253510:intron 50.0%
CAACTACGAGGACCTTGAGT+CGG - chr8_2:50952400-50952419 Msa1253510:intron 50.0%
ACCTTGAGTCGGCTGAAAAG+TGG - chr8_2:50952411-50952430 Msa1253510:intron 50.0%
!! ACCACTTTTCAGCCGACTCA+AGG + chr8_2:50952415-50952434 None:intergenic 50.0%
! TCTTCGTGGAGGCATGGATA+AGG - chr8_2:50952927-50952946 Msa1253510:intron 50.0%
ATTAAACCCTGTGGTGACCG+TGG - chr8_2:50953432-50953451 Msa1253510:CDS 50.0%
CCTTCAGAGTGACATCTCCA+CGG + chr8_2:50953452-50953471 None:intergenic 50.0%
AGGTGGAAAAAATGGCAGGC+CGG + chr8_2:50953572-50953591 None:intergenic 50.0%
GATTGAAGTGGAGGCGAAGA+AGG + chr8_2:50953592-50953611 None:intergenic 50.0%
CACAGACATCTCCACGGTCA+TGG - chr8_2:50950592-50950611 Msa1253510:intron 55.0%
GGGCTCCTTGGAATTGGCAT+AGG - chr8_2:50950826-50950845 Msa1253510:intron 55.0%
GAGCTGTGGAACGAAGTTCC+TGG - chr8_2:50950968-50950987 Msa1253510:CDS 55.0%
AACCCCTGTGAAGGCTTGCA+TGG - chr8_2:50951027-50951046 Msa1253510:intron 55.0%
CTGTAGCATCCTCCGTCTCT+TGG + chr8_2:50951257-50951276 None:intergenic 55.0%
CGACTCAAGGTCCTCGTAGT+TGG + chr8_2:50952402-50952421 None:intergenic 55.0%
! TCGTGGAGGCATGGATAAGG+AGG - chr8_2:50952930-50952949 Msa1253510:intron 55.0%
ACATCTCCACGGTCACCACA+GGG + chr8_2:50953441-50953460 None:intergenic 55.0%
CCGTGGAGATGTCACTCTGA+AGG - chr8_2:50953449-50953468 Msa1253510:CDS 55.0%
!! AGAGAGTATCGACGAGGGCA+TGG - chr8_2:50953513-50953532 Msa1253510:CDS 55.0%
TGAAGTGGAGGCGAAGAAGG+TGG + chr8_2:50953589-50953608 None:intergenic 55.0%
CTTCGCAAGCCAAGAGACGG+AGG - chr8_2:50951245-50951264 Msa1253510:intron 60.0%
GACATCTCCACGGTCACCAC+AGG + chr8_2:50953442-50953461 None:intergenic 60.0%
!! GGCGACGGACTACTCCAACG+AGG - chr8_2:50952221-50952240 Msa1253510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50949942 50953614 50949942 ID=Msa1253510;Name=Msa1253510
chr8_2 mRNA 50949942 50953614 50949942 ID=Msa1253510-mRNA-1;Parent=Msa1253510;Name=Msa1253510-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0|0.77|0.75|0.77|9|0|313
chr8_2 exon 50953414 50953614 50953414 ID=Msa1253510-mRNA-1:exon:15596;Parent=Msa1253510-mRNA-1
chr8_2 exon 50953082 50953089 50953082 ID=Msa1253510-mRNA-1:exon:15595;Parent=Msa1253510-mRNA-1
chr8_2 exon 50952671 50952729 50952671 ID=Msa1253510-mRNA-1:exon:15594;Parent=Msa1253510-mRNA-1
chr8_2 exon 50952480 50952599 50952480 ID=Msa1253510-mRNA-1:exon:15593;Parent=Msa1253510-mRNA-1
chr8_2 exon 50952211 50952356 50952211 ID=Msa1253510-mRNA-1:exon:15592;Parent=Msa1253510-mRNA-1
chr8_2 exon 50951271 50951286 50951271 ID=Msa1253510-mRNA-1:exon:15591;Parent=Msa1253510-mRNA-1
chr8_2 exon 50951073 50951172 50951073 ID=Msa1253510-mRNA-1:exon:15590;Parent=Msa1253510-mRNA-1
chr8_2 exon 50950950 50950990 50950950 ID=Msa1253510-mRNA-1:exon:15589;Parent=Msa1253510-mRNA-1
chr8_2 exon 50949942 50950189 50949942 ID=Msa1253510-mRNA-1:exon:15588;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50953414 50953614 50953414 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50953082 50953089 50953082 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50952671 50952729 50952671 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50952480 50952599 50952480 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50952211 50952356 50952211 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50951271 50951286 50951271 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50951073 50951172 50951073 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50950950 50950990 50950950 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
chr8_2 CDS 50949942 50950189 50949942 ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1
Gene Sequence

>Msa1253510

CAATCTAGGGTTAGAGATTTAATATTGGGTTCACATTTCTTCTTCACTAGATCTAGCCGTAGATCACCGTTGAATCGCCATCACCGTAGATCTGGTTCACATTTCTTCCTCACTAGATCTAGCGCTCTGATTTTCTCGTTTCAACAACGATCCATCAACCTTCATCATCCTTCATCAACGCTCCTTTCTCTCAAACCTAAGGGTTCTTTGGCTCCTTGGAATTGGCATAGGGAGGAAGGTTATTGTCTCCAGAAGACGTCAAATTTTGACATTTCACAAGAGCTGTGGAACGAAGTTCCTGGAATTGAAGACCTTCCTATCGAGCTCGATGATGAAACAACCCCTGTGAAGGCTTGCATGGATTTTCTATACAATGTCAATGGCAGTGAATCAAATTATATACAGAAGGATCAGGAAGAATGCTCGGAGACTTCTTCGCAAGCCAAGAGACGGAGGATGCTACAGTTCAACAATCAGAATAGGAATCATTCCCTTTCGGATGAACAGATGTCTTCAGCATATCTGCAATTAAATCTATCTGAGGATTCAGAAAATGCTTCGTCTTCCAACTACGAGGACCTTGAGTCGGCTGAAAAGTGGTTCGCAGATTGCTTTAAGGATACTGAAATGCAATTATATCCCGATAATCCGAACTTTTCTGGCGTAGATGATGTTCATGTTGATACTACTGGTCGAAAATCTATTATGAAAACACCAACAGGGTTATCTTCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCCTGTGGTGACCGTGGAGATGTCACTCTGAAGGAAATAAATAAGCGCATTTATGGTGTTTTTGATTGCAGTGAAAGAGAGTATCGACGAGGGCATGGAATTGTGTCATATGCTGATAGTACATTTTTAAACCGGCCTGCCATTTTTTCCACCTTCTTCGCCTCCACTTCAATCCAC

Protein sequence

>Msa1253510

QSRVRDLILGSHFFFTRSSRRSPLNRHHRRSGSHFFLTRSSALIFSFQQRSINLHHPSSTLLSLKPKGSLAPWNWHREEGYCLQKTSNFDISQELWNEVPGIEDLPIELDDETTPVKACMDFLYNVNGSESNYIQKDQEECSETSSQAKRRRMLQFNNQNRNHSLSDEQMSSAYLQLNLSEDSENASSSNYEDLESAEKWFADCFKDTEMQLYPDNPNFSGVDDVHVDTTGRKSIMKTPTGLSSSVAYPFAFIKPCGDRGDVTLKEINKRIYGVFDCSEREYRRGHGIVSYADSTFLNRPAIFSTFFASTSIH