Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1253510 | XP_039684039.1 | 67.491 | 283 | 40 | 5 | 70 | 305 | 1 | 278 | 2.19e-118 | 352 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1253510 | sp|Q6NLW5|XRI1_ARATH | 37.398 | 246 | 101 | 9 | 73 | 271 | 12 | 251 | 1.34e-31 | 122 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1253510 | A0A072U9Z7 | 67.730 | 282 | 39 | 5 | 71 | 305 | 12 | 288 | 4.86e-118 | 351 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012170 | Msa1253510 | 0.816669 | 4.907663e-52 | -8.615850e-47 |
Msa0627100 | Msa1253510 | 0.804088 | 2.554999e-49 | -8.615850e-47 |
Msa0213690 | Msa1253510 | 0.882220 | 1.250116e-70 | -8.615850e-47 |
Msa1253510 | Msa1259390 | 0.807458 | 5.004636e-50 | -8.615850e-47 |
Msa1253510 | Msa1335780 | -0.802897 | 4.511708e-49 | -8.615850e-47 |
Msa1253510 | Msa1414750 | -0.807567 | 4.745119e-50 | -8.615850e-47 |
Msa0450630 | Msa1253510 | 0.866795 | 2.195559e-65 | -8.615850e-47 |
Msa1101660 | Msa1253510 | 0.957169 | 5.186493e-115 | -8.615850e-47 |
Msa0240420 | Msa1253510 | 0.819124 | 1.369673e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1253510 | MtrunA17_Chr7g0236031 | 67.730 | 282 | 39 | 5 | 71 | 305 | 12 | 288 | 9.36e-122 | 351 |
Msa1253510 | MtrunA17_Chr8g0340041 | 45.528 | 246 | 85 | 7 | 72 | 271 | 10 | 252 | 5.59e-59 | 191 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1253510 | AT5G48720.2 | 37.398 | 246 | 101 | 9 | 73 | 271 | 12 | 251 | 1.36e-32 | 122 |
Msa1253510 | AT5G48720.4 | 37.398 | 246 | 101 | 9 | 73 | 271 | 12 | 251 | 1.36e-32 | 122 |
Msa1253510 | AT5G48720.1 | 38.318 | 214 | 82 | 6 | 103 | 271 | 9 | 217 | 1.88e-31 | 119 |
Msa1253510 | AT5G48720.3 | 38.318 | 214 | 82 | 6 | 103 | 271 | 9 | 217 | 1.88e-31 | 119 |
Find 76 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCAAAATTTGACGTCTTC+TGG | 0.204285 | 8_2:+50952668 | None:intergenic |
CTCCAGAAGACGTCAAATTT+TGG | 0.204893 | 8_2:-50952670 | Msa1253510:intron |
GAAATAAATAAGCGCATTTA+TGG | 0.237911 | 8_2:-50950063 | Msa1253510:CDS |
CAATAGCTATCTGAGGATTC+AGG | 0.269757 | 8_2:-50951270 | Msa1253510:intron |
AGGGTTAGAGATTTAATATT+GGG | 0.309039 | 8_2:-50953586 | Msa1253510:CDS |
ACCCTTCTTCAGATCAATCT+AGG | 0.324122 | 8_2:-50953606 | None:intergenic |
TTTAGAATCGTACGGATTAT+CGG | 0.334187 | 8_2:+50951060 | None:intergenic |
TAGGGTTAGAGATTTAATAT+TGG | 0.336097 | 8_2:-50953587 | Msa1253510:CDS |
GTGGTTCGCAGATTGCTTTA+AGG | 0.364219 | 8_2:-50951104 | Msa1253510:CDS |
TTGTTAGGGCTCCTTGGAAT+TGG | 0.379300 | 8_2:-50952714 | Msa1253510:intron |
ATAGGAAGGTCTTCAATTCC+AGG | 0.392770 | 8_2:+50952548 | None:intergenic |
TCTATTATGAAAACACCAAC+AGG | 0.395143 | 8_2:-50950159 | Msa1253510:CDS |
GATTGAAGTGGAGGCGAAGA+AGG | 0.426338 | 8_2:+50949945 | None:intergenic |
GAATAGGAATCATTCCCTTT+CGG | 0.427034 | 8_2:-50952246 | Msa1253510:CDS |
GAACCTTAGGTTTGAGAGAA+AGG | 0.435057 | 8_2:+50953410 | None:intergenic |
GAGCTGTGGAACGAAGTTCC+TGG | 0.439400 | 8_2:-50952566 | Msa1253510:CDS |
TTAGAATCGTACGGATTATC+GGG | 0.445115 | 8_2:+50951061 | None:intergenic |
AGAGAAAGGAGCGTTGATGA+AGG | 0.449007 | 8_2:+50953424 | None:intergenic |
AATCGCCATCACCGTAGATC+TGG | 0.457839 | 8_2:-50953520 | Msa1253510:CDS |
CTGTAGCATCCTCCGTCTCT+TGG | 0.464718 | 8_2:+50952280 | None:intergenic |
AAATCCATGCAAGCCTTCAC+AGG | 0.473588 | 8_2:+50952503 | None:intergenic |
GTGTCATTGTTAGGGCTCCT+TGG | 0.483894 | 8_2:-50952720 | Msa1253510:intron |
GGCGATTCAACGGTGATCTA+CGG | 0.484380 | 8_2:+50953536 | None:intergenic |
GACATCTCCACGGTCACCAC+AGG | 0.488010 | 8_2:+50950095 | None:intergenic |
CGACTCAAGGTCCTCGTAGT+TGG | 0.490317 | 8_2:+50951135 | None:intergenic |
CCCTTCTTCAGATCAATCTA+GGG | 0.492398 | 8_2:-50953605 | None:intergenic |
TGAAGGATGATGAAGGTTGA+TGG | 0.492947 | 8_2:+50953441 | None:intergenic |
ACCTTGAGTCGGCTGAAAAG+TGG | 0.500363 | 8_2:-50951123 | Msa1253510:CDS |
AGAGAGTATCGACGAGGGCA+TGG | 0.502831 | 8_2:-50950021 | Msa1253510:CDS |
CTATACAATGTCAATGGCAG+TGG | 0.503910 | 8_2:-50952479 | Msa1253510:intron |
AACCCCTGTGAAGGCTTGCA+TGG | 0.507351 | 8_2:-50952507 | Msa1253510:CDS |
GGGCTCCTTGGAATTGGCAT+AGG | 0.510063 | 8_2:-50952708 | Msa1253510:CDS |
CAGGGTTTAATGAAGGCAAA+TGG | 0.514467 | 8_2:+50950114 | None:intergenic |
AAATTATATACAGAAGGATC+AGG | 0.515910 | 8_2:-50952330 | Msa1253510:CDS |
TACAGTTCAACAATCAGAAT+AGG | 0.521223 | 8_2:-50952262 | Msa1253510:CDS |
GTTTCATCATCGAGCTCGAT+AGG | 0.522563 | 8_2:+50952530 | None:intergenic |
GGCTCCTTGGAATTGGCATA+GGG | 0.526377 | 8_2:-50952707 | Msa1253510:CDS |
AACAGGGTTATCTTCTTCTG+TGG | 0.537338 | 8_2:-50950142 | Msa1253510:CDS |
AGAATCAAATTATATACAGA+AGG | 0.539473 | 8_2:-50952336 | Msa1253510:CDS |
TGAAGTGGAGGCGAAGAAGG+TGG | 0.540709 | 8_2:+50949948 | None:intergenic |
TGGAATTGGCATAGGGAGGA+AGG | 0.544268 | 8_2:-50952700 | Msa1253510:CDS |
AGACATCTGTTCATCCGAAA+GGG | 0.550633 | 8_2:+50952232 | None:intergenic |
GCTCCTTTCTCTCAAACCTA+AGG | 0.555124 | 8_2:-50953413 | Msa1253510:intron |
CTACGGTGATGGCGATTCAA+CGG | 0.557816 | 8_2:+50953526 | None:intergenic |
GATGTTCATGTTGATACTAC+TGG | 0.558777 | 8_2:-50950949 | Msa1253510:intron |
GAAGGATCAGGAAGAATGCT+CGG | 0.568679 | 8_2:-50952318 | Msa1253510:CDS |
AAGACATCTGTTCATCCGAA+AGG | 0.569782 | 8_2:+50952231 | None:intergenic |
TTTAATGAAGGCAAATGGAT+AGG | 0.570098 | 8_2:+50950119 | None:intergenic |
CATCATCGAGCTCGATAGGA+AGG | 0.579526 | 8_2:+50952534 | None:intergenic |
GTCACCACAGGGTTTAATGA+AGG | 0.583162 | 8_2:+50950107 | None:intergenic |
AATCCATGCAAGCCTTCACA+GGG | 0.585902 | 8_2:+50952504 | None:intergenic |
TGATGAAACAACCCCTGTGA+AGG | 0.592823 | 8_2:-50952516 | Msa1253510:CDS |
AGAAATGTGAACCAGATCTA+CGG | 0.606340 | 8_2:+50953509 | None:intergenic |
CCGTGGAGATGTCACTCTGA+AGG | 0.608363 | 8_2:-50950085 | Msa1253510:CDS |
CAACTACGAGGACCTTGAGT+CGG | 0.610167 | 8_2:-50951134 | Msa1253510:CDS |
CTTCTTCGCAAGCCAAGAGA+CGG | 0.610238 | 8_2:-50952292 | Msa1253510:CDS |
GTGAACCAGATCTACGGTGA+TGG | 0.612065 | 8_2:+50953515 | None:intergenic |
TCCTCCCTATGCCAATTCCA+AGG | 0.613237 | 8_2:+50952703 | None:intergenic |
ATTAAACCCTGTGGTGACCG+TGG | 0.617665 | 8_2:-50950102 | Msa1253510:CDS |
TCAGAGCGCTAGATCTAGTG+AGG | 0.619939 | 8_2:+50953485 | None:intergenic |
TCCTTGGAATTGGCATAGGG+AGG | 0.625515 | 8_2:-50952704 | Msa1253510:CDS |
TTTGCCTTCATTAAACCCTG+TGG | 0.639784 | 8_2:-50950111 | Msa1253510:CDS |
CAGACATTTCACAAGAGCTG+TGG | 0.648155 | 8_2:-50952580 | Msa1253510:CDS |
AGTTTCGCAATAGCTATCTG+AGG | 0.652765 | 8_2:-50951277 | Msa1253510:intron |
ACAGAAGAAGATAACCCTGT+TGG | 0.653663 | 8_2:+50950144 | None:intergenic |
CCTTCAGAGTGACATCTCCA+CGG | 0.658194 | 8_2:+50950085 | None:intergenic |
CTTCGCAAGCCAAGAGACGG+AGG | 0.661156 | 8_2:-50952289 | Msa1253510:CDS |
ATGCTAGTGGATTGAAGTGG+AGG | 0.664187 | 8_2:+50949936 | None:intergenic |
ACATCTCCACGGTCACCACA+GGG | 0.674318 | 8_2:+50950096 | None:intergenic |
CTGATGCTAGTGGATTGAAG+TGG | 0.679667 | 8_2:+50949933 | None:intergenic |
CTATTATGAAAACACCAACA+GGG | 0.710635 | 8_2:-50950158 | Msa1253510:CDS |
GTGAAAGAGAGTATCGACGA+GGG | 0.719084 | 8_2:-50950026 | Msa1253510:CDS |
GCGTTGATGAAGGATGATGA+AGG | 0.719612 | 8_2:+50953434 | None:intergenic |
TGCTTCGTCTTCCAACTACG+AGG | 0.733802 | 8_2:-50951146 | Msa1253510:CDS |
AGTGAAAGAGAGTATCGACG+AGG | 0.756352 | 8_2:-50950027 | Msa1253510:CDS |
ATCCATGCAAGCCTTCACAG+GGG | 0.784307 | 8_2:+50952505 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CGATTTTTTTTAATTTTTTT+CGG | - | chr8_2:50950199-50950218 | Msa1253510:intron | 10.0% |
!!! | AATTCATTTTTACATTTATT+AGG | - | chr8_2:50950445-50950464 | Msa1253510:intron | 10.0% |
!!! | ATTCATTTTTACATTTATTA+GGG | - | chr8_2:50950446-50950465 | Msa1253510:intron | 10.0% |
!! | AAAAATTATGAAGAAAAAAA+AGG | + | chr8_2:50952657-50952676 | None:intergenic | 10.0% |
!!! | GTATATTTATTGTGTTATTA+TGG | - | chr8_2:50950501-50950520 | Msa1253510:intron | 15.0% |
!!! | AGTGATTAATTTTAATTTGA+CGG | - | chr8_2:50950690-50950709 | Msa1253510:intron | 15.0% |
!! | ATAATAAACATATATTCAGA+TGG | + | chr8_2:50951134-50951153 | None:intergenic | 15.0% |
!! | GAATATATGTTTATTATTTG+TGG | - | chr8_2:50951137-50951156 | Msa1253510:CDS | 15.0% |
!! | ATGCATTTCTTTAAATTAAA+AGG | + | chr8_2:50951175-50951194 | None:intergenic | 15.0% |
!! | ATAAAAAATAGAAATCTAAC+AGG | + | chr8_2:50951663-50951682 | None:intergenic | 15.0% |
!!! | ATTTTCTTAAATGAAATGAT+TGG | - | chr8_2:50951696-50951715 | Msa1253510:intron | 15.0% |
!! | TAAAAGAGATTTATAGTATA+TGG | - | chr8_2:50953021-50953040 | Msa1253510:intron | 15.0% |
!! | GAAAAATTGAGAGAAAAAAA+AGG | + | chr8_2:50950180-50950199 | None:intergenic | 20.0% |
!! | TACATGTCAATAATTAGATA+AGG | + | chr8_2:50951111-50951130 | None:intergenic | 20.0% |
!! | AGAATCAAATTATATACAGA+AGG | - | chr8_2:50951198-50951217 | Msa1253510:intron | 20.0% |
!! | CTATCTATACTTTATGATAT+GGG | + | chr8_2:50951388-50951407 | None:intergenic | 20.0% |
!! | TATCATTATGTTCATGTATA+TGG | - | chr8_2:50951582-50951601 | Msa1253510:intron | 20.0% |
!! | ACTAAAAGATAGACAAAATA+TGG | + | chr8_2:50951636-50951655 | None:intergenic | 20.0% |
!! | TACAAATCATGAAAATTTGA+AGG | + | chr8_2:50952035-50952054 | None:intergenic | 20.0% |
!! | ACTTGTATTATCATTATAAG+TGG | + | chr8_2:50952071-50952090 | None:intergenic | 20.0% |
!!! | GTGACTTTTGATAAATTATT+TGG | - | chr8_2:50952321-50952340 | Msa1253510:CDS | 20.0% |
!! | AAACAACAAAAGGATAAAAA+AGG | + | chr8_2:50952816-50952835 | None:intergenic | 20.0% |
!! | AGTGAAAAATAAACAACAAA+AGG | + | chr8_2:50952826-50952845 | None:intergenic | 20.0% |
!!! | TTGTTTTAATTCTAGTTAAG+TGG | + | chr8_2:50952897-50952916 | None:intergenic | 20.0% |
!!! | TTTTAGTAGATAGTAGTTAA+TGG | - | chr8_2:50953311-50953330 | Msa1253510:intron | 20.0% |
! | TAGGGTTAGAGATTTAATAT+TGG | - | chr8_2:50949947-50949966 | Msa1253510:CDS | 25.0% |
! | AGGGTTAGAGATTTAATATT+GGG | - | chr8_2:50949948-50949967 | Msa1253510:CDS | 25.0% |
!!! | CTCATTTTAGTTTTTTCATG+CGG | - | chr8_2:50950311-50950330 | Msa1253510:intron | 25.0% |
! | GAAAATACTCAAGTTATATG+GGG | + | chr8_2:50950772-50950791 | None:intergenic | 25.0% |
! | CGAAAATACTCAAGTTATAT+GGG | + | chr8_2:50950773-50950792 | None:intergenic | 25.0% |
! | TCGAAAATACTCAAGTTATA+TGG | + | chr8_2:50950774-50950793 | None:intergenic | 25.0% |
!! | GATTTTCTATACAATGTCAA+TGG | - | chr8_2:50951049-50951068 | Msa1253510:intron | 25.0% |
! | AAATTATATACAGAAGGATC+AGG | - | chr8_2:50951204-50951223 | Msa1253510:intron | 25.0% |
! | GCTATCTATACTTTATGATA+TGG | + | chr8_2:50951389-50951408 | None:intergenic | 25.0% |
! | ATCTTATATATCTCCTGATA+CGG | - | chr8_2:50951492-50951511 | Msa1253510:intron | 25.0% |
! | GTTAATGTCTTGTATTGTAT+TGG | - | chr8_2:50951738-50951757 | Msa1253510:intron | 25.0% |
!! | CAATAACTGTAATTTAGAAC+AGG | - | chr8_2:50951808-50951827 | Msa1253510:intron | 25.0% |
! | TACAAATGTTTAAGTGAAAC+AGG | + | chr8_2:50951847-50951866 | None:intergenic | 25.0% |
!! | AAACATTTGTAATGATAACG+AGG | - | chr8_2:50951856-50951875 | Msa1253510:intron | 25.0% |
!!! | TGTTATTTTCAAATCTGTGA+TGG | - | chr8_2:50951879-50951898 | Msa1253510:intron | 25.0% |
! | AAATAATTACTACGAAGGAT+GGG | + | chr8_2:50951912-50951931 | None:intergenic | 25.0% |
! | ATCACAAATAATTACTACGA+AGG | + | chr8_2:50951917-50951936 | None:intergenic | 25.0% |
! | TTTGACACACAAATGTTAAA+AGG | + | chr8_2:50952095-50952114 | None:intergenic | 25.0% |
! | TTTCTAATGCATATTCCATT+GGG | + | chr8_2:50952367-50952386 | None:intergenic | 25.0% |
!! | TTTTCTAATGCATATTCCAT+TGG | + | chr8_2:50952368-50952387 | None:intergenic | 25.0% |
! | TCTTATAATTATGCTCTTTC+AGG | - | chr8_2:50952544-50952563 | Msa1253510:CDS | 25.0% |
! | TCACTTGATATTGAATAAAG+TGG | - | chr8_2:50952841-50952860 | Msa1253510:intron | 25.0% |
!! | TAATTCTAGTTAAGTGGTAT+TGG | + | chr8_2:50952891-50952910 | None:intergenic | 25.0% |
! | TGACTTTAATAATACTTGAC+AGG | - | chr8_2:50953052-50953071 | Msa1253510:intron | 25.0% |
! | AGATATTCTTTAGTGAGAAA+AGG | - | chr8_2:50953080-50953099 | Msa1253510:intron | 25.0% |
!! | GTTTTCATACTTTACTAAAC+TGG | - | chr8_2:50953212-50953231 | Msa1253510:intron | 25.0% |
! | GAAATAAATAAGCGCATTTA+TGG | - | chr8_2:50953471-50953490 | Msa1253510:CDS | 25.0% |
!! | CTGATAGTACATTTTTAAAC+CGG | - | chr8_2:50953550-50953569 | Msa1253510:CDS | 25.0% |
CGCATGAAAAAACTAAAATG+AGG | + | chr8_2:50950313-50950332 | None:intergenic | 30.0% | |
!!! | TTAGTTTTTTCATGCGGATT+AGG | - | chr8_2:50950317-50950336 | Msa1253510:intron | 30.0% |
!!! | TAGTTTTTTCATGCGGATTA+GGG | - | chr8_2:50950318-50950337 | Msa1253510:intron | 30.0% |
TTGTATTTCATGCATGTTTG+TGG | - | chr8_2:50950473-50950492 | Msa1253510:intron | 30.0% | |
! | TGTGTTATTATGGTGATTTG+TGG | - | chr8_2:50950511-50950530 | Msa1253510:intron | 30.0% |
! | TATTATGGTGATTTGTGGTT+AGG | - | chr8_2:50950516-50950535 | Msa1253510:intron | 30.0% |
! | CTGATATGCTTTTACAAAGT+CGG | - | chr8_2:50950547-50950566 | Msa1253510:intron | 30.0% |
! | TGATATGCTTTTACAAAGTC+GGG | - | chr8_2:50950548-50950567 | Msa1253510:intron | 30.0% |
! | TTTCTGAATGTGTCATTGTT+AGG | - | chr8_2:50950805-50950824 | Msa1253510:intron | 30.0% |
! | TTCTGAATGTGTCATTGTTA+GGG | - | chr8_2:50950806-50950825 | Msa1253510:intron | 30.0% |
AAATGTCTGATCAAACAACT+AGG | + | chr8_2:50950943-50950962 | None:intergenic | 30.0% | |
TACAGTTCAACAATCAGAAT+AGG | - | chr8_2:50951272-50951291 | Msa1253510:intron | 30.0% | |
ATAGCATAAACATACCTAGT+GGG | - | chr8_2:50951404-50951423 | Msa1253510:intron | 30.0% | |
! | AATGATTGGTTCAACTTTAG+TGG | - | chr8_2:50951710-50951729 | Msa1253510:intron | 30.0% |
CAAATAATTACTACGAAGGA+TGG | + | chr8_2:50951913-50951932 | None:intergenic | 30.0% | |
CACATTATATGTAGGACTTT+AGG | + | chr8_2:50951962-50951981 | None:intergenic | 30.0% | |
GGATACTTCACATTATATGT+AGG | + | chr8_2:50951970-50951989 | None:intergenic | 30.0% | |
ATGGATCAACTTAAAACAGA+AGG | + | chr8_2:50951991-50952010 | None:intergenic | 30.0% | |
!!! | TGTTTTAAGTTGATCCATAG+TGG | - | chr8_2:50951993-50952012 | Msa1253510:intron | 30.0% |
TCATAAAAGAGTAACCACTA+TGG | + | chr8_2:50952010-50952029 | None:intergenic | 30.0% | |
GACTGTTTCATTATGCATAT+AGG | - | chr8_2:50952200-50952219 | Msa1253510:intron | 30.0% | |
! | TATTTCTATTCTTTCCCCAA+TGG | - | chr8_2:50952349-50952368 | Msa1253510:intron | 30.0% |
TTCTAATGCATATTCCATTG+GGG | + | chr8_2:50952366-50952385 | None:intergenic | 30.0% | |
! | TTTAGAATCGTACGGATTAT+CGG | + | chr8_2:50952477-50952496 | None:intergenic | 30.0% |
AACCACTGCAAATATAATTG+TGG | - | chr8_2:50952497-50952516 | Msa1253510:CDS | 30.0% | |
TAAACATTAGAAGACAACAG+TGG | + | chr8_2:50952631-50952650 | None:intergenic | 30.0% | |
! | CCTTTGAAGACAATTTATCT+GGG | + | chr8_2:50952788-50952807 | None:intergenic | 30.0% |
! | ACCTTTGAAGACAATTTATC+TGG | + | chr8_2:50952789-50952808 | None:intergenic | 30.0% |
ACAAGTAATATTTGTCTTCG+TGG | - | chr8_2:50952913-50952932 | Msa1253510:intron | 30.0% | |
CTACTATCTACTAAAACTTC+TGG | + | chr8_2:50953307-50953326 | None:intergenic | 30.0% | |
TCTATTATGAAAACACCAAC+AGG | - | chr8_2:50953375-50953394 | Msa1253510:intron | 30.0% | |
CTATTATGAAAACACCAACA+GGG | - | chr8_2:50953376-50953395 | Msa1253510:intron | 30.0% | |
TTTAATGAAGGCAAATGGAT+AGG | + | chr8_2:50953418-50953437 | None:intergenic | 30.0% | |
AGAAATGTGAACCAGATCTA+CGG | + | chr8_2:50950028-50950047 | None:intergenic | 35.0% | |
! | CGTAGTTGTTGATTGTATTG+TGG | - | chr8_2:50950250-50950269 | Msa1253510:intron | 35.0% |
TGGAGTGAGAAATTTGTGTT+AGG | - | chr8_2:50950270-50950289 | Msa1253510:intron | 35.0% | |
AATTTGAGAGCGATTTACTG+TGG | - | chr8_2:50950380-50950399 | Msa1253510:intron | 35.0% | |
!!! | GTTCGTTTTTTCTTTGACTG+TGG | - | chr8_2:50950408-50950427 | Msa1253510:intron | 35.0% |
AAAAGAAGAATACACCACAG+AGG | - | chr8_2:50950615-50950634 | Msa1253510:intron | 35.0% | |
AAAGAAGAATACACCACAGA+GGG | - | chr8_2:50950616-50950635 | Msa1253510:intron | 35.0% | |
TACCAAAATTTGACGTCTTC+TGG | + | chr8_2:50950869-50950888 | None:intergenic | 35.0% | |
GAATAGGAATCATTCCCTTT+CGG | - | chr8_2:50951288-50951307 | Msa1253510:intron | 35.0% | |
GATAGCATAAACATACCTAG+TGG | - | chr8_2:50951403-50951422 | Msa1253510:intron | 35.0% | |
!! | AGTGAAGAGCTTTGAAAAAG+TGG | + | chr8_2:50951779-50951798 | None:intergenic | 35.0% |
TTCATTATGCATATAGGCGA+CGG | - | chr8_2:50952206-50952225 | Msa1253510:intron | 35.0% | |
TCAAAGCTAAATCTTGCATG+AGG | + | chr8_2:50952294-50952313 | None:intergenic | 35.0% | |
! | TTAGAATCGTACGGATTATC+GGG | + | chr8_2:50952476-50952495 | None:intergenic | 35.0% |
!!! | CAGTGGTTTTTAGAATCGTA+CGG | + | chr8_2:50952485-50952504 | None:intergenic | 35.0% |
TGCCACAATTATATTTGCAG+TGG | + | chr8_2:50952502-50952521 | None:intergenic | 35.0% | |
GATGTTCATGTTGATACTAC+TGG | - | chr8_2:50952585-50952604 | Msa1253510:intron | 35.0% | |
CAATTAAGTTCAACGTACAG+CGG | + | chr8_2:50952681-50952700 | None:intergenic | 35.0% | |
CCCAGATAAATTGTCTTCAA+AGG | - | chr8_2:50952785-50952804 | Msa1253510:intron | 35.0% | |
AGTAATATTTGTCTTCGTGG+AGG | - | chr8_2:50952916-50952935 | Msa1253510:intron | 35.0% | |
AGTCTAAAAGTTTGAGCTAG+AGG | - | chr8_2:50952971-50952990 | Msa1253510:intron | 35.0% | |
GTCTAAAAGTTTGAGCTAGA+GGG | - | chr8_2:50952972-50952991 | Msa1253510:intron | 35.0% | |
CTACTAAAACTTCTGGCATA+AGG | + | chr8_2:50953300-50953319 | None:intergenic | 35.0% | |
TGAAGGATGATGAAGGTTGA+TGG | + | chr8_2:50950096-50950115 | None:intergenic | 40.0% | |
GAACCTTAGGTTTGAGAGAA+AGG | + | chr8_2:50950127-50950146 | None:intergenic | 40.0% | |
! | GAAGAAGAAGTACGAACCTT+AGG | + | chr8_2:50950140-50950159 | None:intergenic | 40.0% |
!! | TTTCATGCGGATTAGGGATT+TGG | - | chr8_2:50950324-50950343 | Msa1253510:intron | 40.0% |
!! | TTCATGCGGATTAGGGATTT+GGG | - | chr8_2:50950325-50950344 | Msa1253510:intron | 40.0% |
! | AGAGCGATTTACTGTGGTTT+TGG | - | chr8_2:50950386-50950405 | Msa1253510:intron | 40.0% |
! | ATTCTTCTTTTCCATGACCG+TGG | + | chr8_2:50950606-50950625 | None:intergenic | 40.0% |
AAGAAGAATACACCACAGAG+GGG | - | chr8_2:50950617-50950636 | Msa1253510:intron | 40.0% | |
TCTCGTTTCTCATCACTAGT+TGG | - | chr8_2:50950727-50950746 | Msa1253510:intron | 40.0% | |
! | CTCCAGAAGACGTCAAATTT+TGG | - | chr8_2:50950864-50950883 | Msa1253510:intron | 40.0% |
ATAGGAAGGTCTTCAATTCC+AGG | + | chr8_2:50950989-50951008 | None:intergenic | 40.0% | |
CTATACAATGTCAATGGCAG+TGG | - | chr8_2:50951055-50951074 | Msa1253510:intron | 40.0% | |
AGTGGTAAGTTCTCTCTGAA+AGG | - | chr8_2:50951073-50951092 | Msa1253510:CDS | 40.0% | |
AGACATCTGTTCATCCGAAA+GGG | + | chr8_2:50951305-50951324 | None:intergenic | 40.0% | |
AAGACATCTGTTCATCCGAA+AGG | + | chr8_2:50951306-50951325 | None:intergenic | 40.0% | |
ATTGGGAGATTTATCCCACT+AGG | + | chr8_2:50951421-50951440 | None:intergenic | 40.0% | |
GTGGGATAAATCTCCCAATA+CGG | - | chr8_2:50951422-50951441 | Msa1253510:intron | 40.0% | |
GATAAATCTCCCAATACGGT+GGG | - | chr8_2:50951426-50951445 | Msa1253510:intron | 40.0% | |
ATAAATCTCCCAATACGGTG+GGG | - | chr8_2:50951427-50951446 | Msa1253510:intron | 40.0% | |
TAGAACAATCAGACCCATCA+TGG | - | chr8_2:50951454-50951473 | Msa1253510:intron | 40.0% | |
AGAACAATCAGACCCATCAT+GGG | - | chr8_2:50951455-50951474 | Msa1253510:intron | 40.0% | |
ATATATCTCCTGATACGGCA+TGG | - | chr8_2:50951497-50951516 | Msa1253510:intron | 40.0% | |
ATAGCTATTGCGAAACTTCC+GGG | + | chr8_2:50952254-50952273 | None:intergenic | 40.0% | |
GATAGCTATTGCGAAACTTC+CGG | + | chr8_2:50952255-50952274 | None:intergenic | 40.0% | |
AGTTTCGCAATAGCTATCTG+AGG | - | chr8_2:50952257-50952276 | Msa1253510:CDS | 40.0% | |
CAATAGCTATCTGAGGATTC+AGG | - | chr8_2:50952264-50952283 | Msa1253510:CDS | 40.0% | |
! | TGCTCTTTCAGGAACTTTTC+TGG | - | chr8_2:50952555-50952574 | Msa1253510:CDS | 40.0% |
ACCACCATTTGAACAGAATG+TGG | - | chr8_2:50952739-50952758 | Msa1253510:intron | 40.0% | |
TGAGCCACATTCTGTTCAAA+TGG | + | chr8_2:50952746-50952765 | None:intergenic | 40.0% | |
! | TATTGGAAGTATGCGTTTGG+AGG | + | chr8_2:50952874-50952893 | None:intergenic | 40.0% |
! | TGGTATTGGAAGTATGCGTT+TGG | + | chr8_2:50952877-50952896 | None:intergenic | 40.0% |
AGAGGGAGACAGATATGTAT+AGG | - | chr8_2:50952989-50953008 | Msa1253510:intron | 40.0% | |
TGATCATGTCATGTCTACGA+AGG | + | chr8_2:50953175-50953194 | None:intergenic | 40.0% | |
! | GTGCTTTTGTTCCTAAAGCT+GGG | - | chr8_2:50953234-50953253 | Msa1253510:intron | 40.0% |
! | TGCTTTTGTTCCTAAAGCTG+GGG | - | chr8_2:50953235-50953254 | Msa1253510:intron | 40.0% |
TGATTAAAGACCCCAGCTTT+AGG | + | chr8_2:50953248-50953267 | None:intergenic | 40.0% | |
TGACTCGCATTTACATGTGT+AGG | - | chr8_2:50953345-50953364 | Msa1253510:intron | 40.0% | |
ACAGAAGAAGATAACCCTGT+TGG | + | chr8_2:50953393-50953412 | None:intergenic | 40.0% | |
AACAGGGTTATCTTCTTCTG+TGG | - | chr8_2:50953392-50953411 | Msa1253510:intron | 40.0% | |
CAGGGTTTAATGAAGGCAAA+TGG | + | chr8_2:50953423-50953442 | None:intergenic | 40.0% | |
TTTGCCTTCATTAAACCCTG+TGG | - | chr8_2:50953423-50953442 | Msa1253510:CDS | 40.0% | |
AAGAAGGTGGAAAAAATGGC+AGG | + | chr8_2:50953576-50953595 | None:intergenic | 40.0% | |
! | GCGTTGATGAAGGATGATGA+AGG | + | chr8_2:50950103-50950122 | None:intergenic | 45.0% |
!! | AGAGAAAGGAGCGTTGATGA+AGG | + | chr8_2:50950113-50950132 | None:intergenic | 45.0% |
GCTCCTTTCTCTCAAACCTA+AGG | - | chr8_2:50950121-50950140 | Msa1253510:CDS | 45.0% | |
!! | TCATGCGGATTAGGGATTTG+GGG | - | chr8_2:50950326-50950345 | Msa1253510:intron | 45.0% |
! | TGGGGAAGTTCGAGTAGTTT+TGG | - | chr8_2:50950344-50950363 | Msa1253510:intron | 45.0% |
ATGAAGCACAGACATCTCCA+CGG | - | chr8_2:50950586-50950605 | Msa1253510:intron | 45.0% | |
AGAAGAATACACCACAGAGG+GGG | - | chr8_2:50950618-50950637 | Msa1253510:intron | 45.0% | |
AGTTATATGGGGAGTGACTC+AGG | + | chr8_2:50950761-50950780 | None:intergenic | 45.0% | |
TTGTTAGGGCTCCTTGGAAT+TGG | - | chr8_2:50950820-50950839 | Msa1253510:intron | 45.0% | |
CAGACATTTCACAAGAGCTG+TGG | - | chr8_2:50950954-50950973 | Msa1253510:CDS | 45.0% | |
GTTTCATCATCGAGCTCGAT+AGG | + | chr8_2:50951007-50951026 | None:intergenic | 45.0% | |
TGATGAAACAACCCCTGTGA+AGG | - | chr8_2:50951018-50951037 | Msa1253510:intron | 45.0% | |
AATCCATGCAAGCCTTCACA+GGG | + | chr8_2:50951033-50951052 | None:intergenic | 45.0% | |
AAATCCATGCAAGCCTTCAC+AGG | + | chr8_2:50951034-50951053 | None:intergenic | 45.0% | |
GAAGGATCAGGAAGAATGCT+CGG | - | chr8_2:50951216-50951235 | Msa1253510:intron | 45.0% | |
GGATAAATCTCCCAATACGG+TGG | - | chr8_2:50951425-50951444 | Msa1253510:intron | 45.0% | |
TCTATAGACCCCACCGTATT+GGG | + | chr8_2:50951438-50951457 | None:intergenic | 45.0% | |
TTCTATAGACCCCACCGTAT+TGG | + | chr8_2:50951439-50951458 | None:intergenic | 45.0% | |
GAACAATCAGACCCATCATG+GGG | - | chr8_2:50951456-50951475 | Msa1253510:intron | 45.0% | |
TCTACAACAGACCCCATGAT+GGG | + | chr8_2:50951470-50951489 | None:intergenic | 45.0% | |
! | CTCCAACGAGGATATTTTCC+CGG | - | chr8_2:50952233-50952252 | Msa1253510:CDS | 45.0% |
TTCCGGGAAAATATCCTCGT+TGG | + | chr8_2:50952238-50952257 | None:intergenic | 45.0% | |
GTGGTTCGCAGATTGCTTTA+AGG | - | chr8_2:50952430-50952449 | Msa1253510:intron | 45.0% | |
GCCACATTCTGTTCAAATGG+TGG | + | chr8_2:50952743-50952762 | None:intergenic | 45.0% | |
TATTTGTCTTCGTGGAGGCA+TGG | - | chr8_2:50952921-50952940 | Msa1253510:intron | 45.0% | |
! | GATAAGGAGGTTTGACTCGA+TGG | - | chr8_2:50952943-50952962 | Msa1253510:intron | 45.0% |
! | GGTGCTTTTGTTCCTAAAGC+TGG | - | chr8_2:50953233-50953252 | Msa1253510:intron | 45.0% |
GTCACCACAGGGTTTAATGA+AGG | + | chr8_2:50953430-50953449 | None:intergenic | 45.0% | |
!! | AGTGAAAGAGAGTATCGACG+AGG | - | chr8_2:50953507-50953526 | Msa1253510:CDS | 45.0% |
!! | GTGAAAGAGAGTATCGACGA+GGG | - | chr8_2:50953508-50953527 | Msa1253510:CDS | 45.0% |
GGCGAAGAAGGTGGAAAAAA+TGG | + | chr8_2:50953580-50953599 | None:intergenic | 45.0% | |
GGCGATTCAACGGTGATCTA+CGG | + | chr8_2:50950001-50950020 | None:intergenic | 50.0% | |
! | CTACGGTGATGGCGATTCAA+CGG | + | chr8_2:50950011-50950030 | None:intergenic | 50.0% |
AATCGCCATCACCGTAGATC+TGG | - | chr8_2:50950014-50950033 | Msa1253510:CDS | 50.0% | |
GTGAACCAGATCTACGGTGA+TGG | + | chr8_2:50950022-50950041 | None:intergenic | 50.0% | |
! | TCAGAGCGCTAGATCTAGTG+AGG | + | chr8_2:50950052-50950071 | None:intergenic | 50.0% |
AAACTCTTCATCCCCCTCTG+TGG | + | chr8_2:50950632-50950651 | None:intergenic | 50.0% | |
! | GTGTCATTGTTAGGGCTCCT+TGG | - | chr8_2:50950814-50950833 | Msa1253510:intron | 50.0% |
GGCTCCTTGGAATTGGCATA+GGG | - | chr8_2:50950827-50950846 | Msa1253510:intron | 50.0% | |
TCCTTGGAATTGGCATAGGG+AGG | - | chr8_2:50950830-50950849 | Msa1253510:intron | 50.0% | |
TCCTCCCTATGCCAATTCCA+AGG | + | chr8_2:50950834-50950853 | None:intergenic | 50.0% | |
TGGAATTGGCATAGGGAGGA+AGG | - | chr8_2:50950834-50950853 | Msa1253510:intron | 50.0% | |
CATCATCGAGCTCGATAGGA+AGG | + | chr8_2:50951003-50951022 | None:intergenic | 50.0% | |
ATCCATGCAAGCCTTCACAG+GGG | + | chr8_2:50951032-50951051 | None:intergenic | 50.0% | |
CTTCTTCGCAAGCCAAGAGA+CGG | - | chr8_2:50951242-50951261 | Msa1253510:intron | 50.0% | |
GTCTACAACAGACCCCATGA+TGG | + | chr8_2:50951471-50951490 | None:intergenic | 50.0% | |
TCACTAGACCATGCCGTATC+AGG | + | chr8_2:50951508-50951527 | None:intergenic | 50.0% | |
TGCTTCGTCTTCCAACTACG+AGG | - | chr8_2:50952388-50952407 | Msa1253510:intron | 50.0% | |
CAACTACGAGGACCTTGAGT+CGG | - | chr8_2:50952400-50952419 | Msa1253510:intron | 50.0% | |
ACCTTGAGTCGGCTGAAAAG+TGG | - | chr8_2:50952411-50952430 | Msa1253510:intron | 50.0% | |
!! | ACCACTTTTCAGCCGACTCA+AGG | + | chr8_2:50952415-50952434 | None:intergenic | 50.0% |
! | TCTTCGTGGAGGCATGGATA+AGG | - | chr8_2:50952927-50952946 | Msa1253510:intron | 50.0% |
ATTAAACCCTGTGGTGACCG+TGG | - | chr8_2:50953432-50953451 | Msa1253510:CDS | 50.0% | |
CCTTCAGAGTGACATCTCCA+CGG | + | chr8_2:50953452-50953471 | None:intergenic | 50.0% | |
AGGTGGAAAAAATGGCAGGC+CGG | + | chr8_2:50953572-50953591 | None:intergenic | 50.0% | |
GATTGAAGTGGAGGCGAAGA+AGG | + | chr8_2:50953592-50953611 | None:intergenic | 50.0% | |
CACAGACATCTCCACGGTCA+TGG | - | chr8_2:50950592-50950611 | Msa1253510:intron | 55.0% | |
GGGCTCCTTGGAATTGGCAT+AGG | - | chr8_2:50950826-50950845 | Msa1253510:intron | 55.0% | |
GAGCTGTGGAACGAAGTTCC+TGG | - | chr8_2:50950968-50950987 | Msa1253510:CDS | 55.0% | |
AACCCCTGTGAAGGCTTGCA+TGG | - | chr8_2:50951027-50951046 | Msa1253510:intron | 55.0% | |
CTGTAGCATCCTCCGTCTCT+TGG | + | chr8_2:50951257-50951276 | None:intergenic | 55.0% | |
CGACTCAAGGTCCTCGTAGT+TGG | + | chr8_2:50952402-50952421 | None:intergenic | 55.0% | |
! | TCGTGGAGGCATGGATAAGG+AGG | - | chr8_2:50952930-50952949 | Msa1253510:intron | 55.0% |
ACATCTCCACGGTCACCACA+GGG | + | chr8_2:50953441-50953460 | None:intergenic | 55.0% | |
CCGTGGAGATGTCACTCTGA+AGG | - | chr8_2:50953449-50953468 | Msa1253510:CDS | 55.0% | |
!! | AGAGAGTATCGACGAGGGCA+TGG | - | chr8_2:50953513-50953532 | Msa1253510:CDS | 55.0% |
TGAAGTGGAGGCGAAGAAGG+TGG | + | chr8_2:50953589-50953608 | None:intergenic | 55.0% | |
CTTCGCAAGCCAAGAGACGG+AGG | - | chr8_2:50951245-50951264 | Msa1253510:intron | 60.0% | |
GACATCTCCACGGTCACCAC+AGG | + | chr8_2:50953442-50953461 | None:intergenic | 60.0% | |
!! | GGCGACGGACTACTCCAACG+AGG | - | chr8_2:50952221-50952240 | Msa1253510:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 50949942 | 50953614 | 50949942 | ID=Msa1253510;Name=Msa1253510 |
chr8_2 | mRNA | 50949942 | 50953614 | 50949942 | ID=Msa1253510-mRNA-1;Parent=Msa1253510;Name=Msa1253510-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0|0.77|0.75|0.77|9|0|313 |
chr8_2 | exon | 50953414 | 50953614 | 50953414 | ID=Msa1253510-mRNA-1:exon:15596;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50953082 | 50953089 | 50953082 | ID=Msa1253510-mRNA-1:exon:15595;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50952671 | 50952729 | 50952671 | ID=Msa1253510-mRNA-1:exon:15594;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50952480 | 50952599 | 50952480 | ID=Msa1253510-mRNA-1:exon:15593;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50952211 | 50952356 | 50952211 | ID=Msa1253510-mRNA-1:exon:15592;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50951271 | 50951286 | 50951271 | ID=Msa1253510-mRNA-1:exon:15591;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50951073 | 50951172 | 50951073 | ID=Msa1253510-mRNA-1:exon:15590;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50950950 | 50950990 | 50950950 | ID=Msa1253510-mRNA-1:exon:15589;Parent=Msa1253510-mRNA-1 |
chr8_2 | exon | 50949942 | 50950189 | 50949942 | ID=Msa1253510-mRNA-1:exon:15588;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50953414 | 50953614 | 50953414 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50953082 | 50953089 | 50953082 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50952671 | 50952729 | 50952671 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50952480 | 50952599 | 50952480 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50952211 | 50952356 | 50952211 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50951271 | 50951286 | 50951271 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50951073 | 50951172 | 50951073 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50950950 | 50950990 | 50950950 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
chr8_2 | CDS | 50949942 | 50950189 | 50949942 | ID=Msa1253510-mRNA-1:cds;Parent=Msa1253510-mRNA-1 |
Gene Sequence |
Protein sequence |