AlfalfaGEDB | Msa0219700

M. sativa cultivar zhongmu-4 / Msa0219700

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219700	XP_013463687.1	98.221	506	9	0	1	506	1	506	0.0	1023

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219700	sp\|Q8LEB6\|Y5185_ARATH	68.263	501	134	10	1	497	1	480	0.0	657

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219700	A0A072V7B9	98.221	506	9	0	1	506	1	506	0.0	1023

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0219700	Msa0286060	0.828549	8.452801e-55	-8.615850e-47
Msa0219700	Msa0789650	0.813893	2.032287e-51	-8.615850e-47
Msa0219700	Msa1198530	0.816017	6.868384e-52	-8.615850e-47
Msa0219700	Msa1459460	0.816765	4.672583e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219700	MtrunA17_Chr2g0302631	98.221	506	9	0	1	506	1	506	0.0	1023
Msa0219700	MtrunA17_Chr4g0069251	83.135	504	80	3	1	504	1	499	0.0	860
Msa0219700	MtrunA17_Chr7g0271451	73.861	505	118	6	1	492	1	504	0.0	733
Msa0219700	MtrunA17_Chr3g0096351	66.247	477	149	6	5	478	7	474	0.0	628
Msa0219700	MtrunA17_Chr5g0443121	64.950	505	156	10	5	500	7	499	0.0	617
Msa0219700	MtrunA17_Chr8g0348451	52.183	504	183	8	2	493	6	463	3.19e-165	476
Msa0219700	MtrunA17_Chr7g0248491	49.216	510	189	7	5	499	9	463	1.68e-164	474
Msa0219700	MtrunA17_Chr5g0402071	49.797	492	217	6	2	486	6	474	5.48e-159	461
Msa0219700	MtrunA17_Chr4g0034931	62.941	340	126	0	162	501	118	457	9.50e-155	449
Msa0219700	MtrunA17_Chr3g0144551	65.696	309	106	0	164	472	114	422	6.35e-153	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0219700	AT1G56720.3	71.111	495	125	7	1	491	1	481	668
Msa0219700	AT1G56720.1	71.111	495	125	7	1	491	1	481	668
Msa0219700	AT1G56720.2	71.111	495	125	7	1	491	1	481	668
Msa0219700	AT1G56720.4	71.111	495	125	7	1	491	1	481	668
Msa0219700	AT5G18500.2	68.263	501	134	10	1	497	1	480	657
Msa0219700	AT5G18500.5	68.263	501	134	10	1	497	1	480	657
Msa0219700	AT5G18500.4	68.263	501	134	10	1	497	1	480	657
Msa0219700	AT5G18500.1	68.263	501	134	10	1	497	1	480	657
Msa0219700	AT5G18500.3	68.263	501	134	10	1	497	1	480	657
Msa0219700	AT5G18500.6	68.263	501	134	10	1	497	1	480	657

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Find 172 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGCTGGTTCTTGCT+CGG	0.569964	2_1:-67504926	None:intergenic
AAAATCTGAGGAGAAGCAAA+TGG	0.543890	2_1:-67499698	None:intergenic
AAAGACAATATTATTGGTGA+AGG	0.562362	2_1:+67501301	Msa0219700:CDS
AAGAAGCACATGAAAATCTG+AGG	0.657053	2_1:-67499710	None:intergenic
AAGAGCGGCATGCTTCCTCT+TGG	0.493646	2_1:+67500902	Msa0219700:CDS
AAGAGTGATGTTTATAGCTT+TGG	0.400419	2_1:+67502940	Msa0219700:CDS
AAGCCAGAATTGGCATATTC+TGG	0.388285	2_1:-67502907	None:intergenic
AAGCTATAACAACAAATAAT+AGG	0.329130	2_1:-67504968	None:intergenic
AAGGAATCAAGCAGGAAACA+CGG	0.624152	2_1:+67504724	Msa0219700:CDS
AAGTCTAGAAGAGGCAAGAG+CGG	0.588933	2_1:+67500887	Msa0219700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTTACTAAAATGCTCAAA+AGG	-	chr2_1:67499838-67499857	None:intergenic	30.0%
AACACAAAAAGAACAATCCT+TGG	-	chr2_1:67500104-67500123	None:intergenic	30.0%
TAAGCAACAAAGACTAACAT+AGG	-	chr2_1:67500217-67500236	None:intergenic	30.0%
ATATGGAAATGAACTTGTGT+TGG	+	chr2_1:67500440-67500459	Msa0219700:intron	30.0%
GAGAAACTTAATCATACATC+TGG	-	chr2_1:67500542-67500561	None:intergenic	30.0%
TTAAGAAAGAAGTCTAGAAG+AGG	+	chr2_1:67500878-67500897	Msa0219700:CDS	30.0%
ATAGATAAAATATGGCCAAG+AGG	-	chr2_1:67500920-67500939	None:intergenic	30.0%
TATTATCTCCATTCTTTGCT+TGG	-	chr2_1:67501063-67501082	None:intergenic	30.0%
AATCACACTGTTATAAAACC+TGG	-	chr2_1:67501464-67501483	None:intergenic	30.0%
ACAAGCTGAAAAGGAATTTA+GGG	+	chr2_1:67501555-67501574	Msa0219700:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	67499355	67505221	67499355	ID=Msa0219700;Name=Msa0219700
chr2_1	mRNA	67499355	67505221	67499355	ID=Msa0219700-mRNA-1;Parent=Msa0219700;Name=Msa0219700-mRNA-1;_AED=0.16;_eAED=0.16;_QI=650\|1\|1\|1\|0.85\|0.75\|8\|386\|506
chr2_1	exon	67499355	67499984	67499355	ID=Msa0219700-mRNA-1:exon:19096;Parent=Msa0219700-mRNA-1
chr2_1	exon	67500726	67501398	67500726	ID=Msa0219700-mRNA-1:exon:19097;Parent=Msa0219700-mRNA-1
chr2_1	exon	67501552	67501656	67501552	ID=Msa0219700-mRNA-1:exon:19098;Parent=Msa0219700-mRNA-1
chr2_1	exon	67501922	67502044	67501922	ID=Msa0219700-mRNA-1:exon:19099;Parent=Msa0219700-mRNA-1
chr2_1	exon	67502162	67502332	67502162	ID=Msa0219700-mRNA-1:exon:19100;Parent=Msa0219700-mRNA-1
chr2_1	exon	67502897	67503026	67502897	ID=Msa0219700-mRNA-1:exon:19101;Parent=Msa0219700-mRNA-1
chr2_1	exon	67503535	67503747	67503535	ID=Msa0219700-mRNA-1:exon:19102;Parent=Msa0219700-mRNA-1
chr2_1	exon	67504710	67505221	67504710	ID=Msa0219700-mRNA-1:exon:19103;Parent=Msa0219700-mRNA-1
chr2_1	five_prime_UTR	67499355	67499984	67499355	ID=Msa0219700-mRNA-1:five_prime_utr;Parent=Msa0219700-mRNA-1
chr2_1	five_prime_UTR	67500726	67500745	67500726	ID=Msa0219700-mRNA-1:five_prime_utr;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67500746	67501398	67500746	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67501552	67501656	67501552	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67501922	67502044	67501922	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67502162	67502332	67502162	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67502897	67503026	67502897	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67503535	67503747	67503535	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	CDS	67504710	67504835	67504710	ID=Msa0219700-mRNA-1:cds;Parent=Msa0219700-mRNA-1
chr2_1	three_prime_UTR	67504836	67505221	67504836	ID=Msa0219700-mRNA-1:three_prime_utr;Parent=Msa0219700-mRNA-1

Gene Sequence

>Msa0219700

ATGGCATCTGATCTAAATTCAGGGTTGTCAAAGAAAACAAATGTTTTTGGATTGAAAGTGTGGGTATTAATGGGAATAGTGGTTGGTTTGTTCATTATAATCATTCTTGTGGTGCTATCGATATGTCTTACTTTAAGAAAGAAGTCTAGAAGAGGCAAGAGCGGCATGCTTCCTCTTGGCCATATTTTATCTATTTCAGAAGAGATCAAAGAAATTAGTGTCGATCAAGTTTCATCGAATAATCATCCGCAGAATGGTTCTTTTATGAGCTTGAATGATAAGTTTAGTGACGGCGATTCTGGAAAGGTTTTGATCCAAGCAAAGAATGGAGATAATAGTAGTCAATCAGGCTCATTTAATCGTTTAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGATAGCGGCGGTTTTAGGAGCGTTTCGGCTTATAGGTCTTCGTCGCATCCTATATCCGCACCATCGCCGTGTTCTGGTCTGCCTGAATTCTCTCACCTTGGTTGGGGCCACTGGTTTACGTTAAGGGACCTTGAACTTGCAACAAATAGGTTTGCAAAAGACAATATTATTGGTGAAGGTGGTTATGGAGTTGTCTATCGAGGTCAACTTATCAACGGGAACCCTGTGGCCGTTAAGAAACTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTCGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTCCGGCTTTTGGGTTTTTGCATTGAAGGCACTCACAGGTTACTGATTTACGAGTATGTTAACAATGGAAATTTAGAGCAATGGCTTCACGGAGCAATGCGTCAGCATGGCTATCTTACTTGGGAAGCTCGGATGAAAATTCTTCTTGGAACAGCCAAAGCGCTGGCTTACTTGCACGAGGCGATTGAGCCAAAAGTTGTACATCGAGATATTAAGTCGAGCAATATTCTAATTGATGATAGCTTTAATGCTAAAATATCCGACTTTGGGCTTGCTAAATTACTTGGTGCTGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTCGGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGTTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTATTGCTTCTTGAAGCAATTACAGGAAGAGATCCGGTCGATTATAGCCGACCAGCAGCCGAGGTAAATTTGGTTGATTGGCTCAAGATGATGGTTGGGTGTAGGCGCTCAGAAGAGGTGGTAGACCCCATGATTGAGACTAGGCCATCAACAAGTGCTCTAAAACGATCCCTCTTAACTGCTTTGAGATGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGACCCAAGTTGTTCGTATGCTTGAATCGGAGGAATATCCCATACCTCGAGAGGACCGAAGACGGAGAAGGAATCAAGCAGGAAACACGGAGGGAGAGAGCCAGAGGGAGGCTTCTGATACAGACAAAAGTGACAATCCAGATCATAAATCAAATGTAAGAAGTAACCAAAACCTGTAG

Protein sequence

>Msa0219700

MASDLNSGLSKKTNVFGLKVWVLMGIVVGLFIIIILVVLSICLTLRKKSRRGKSGMLPLGHILSISEEIKEISVDQVSSNNHPQNGSFMSLNDKFSDGDSGKVLIQAKNGDNSSQSGSFNRLEKDLNGSQSGEDSGGFRSVSAYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFAKDNIIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDSFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGCRRSEEVVDPMIETRPSTSALKRSLLTALRCVDPDSEKRPKMTQVVRMLESEEYPIPREDRRRRRNQAGNTEGESQREASDTDKSDNPDHKSNVRSNQNL*