Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220480 | XP_013465074.1 | 98.083 | 313 | 6 | 0 | 1 | 313 | 1 | 313 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220480 | sp|P34913|HYES_HUMAN | 33.746 | 323 | 189 | 12 | 3 | 312 | 236 | 546 | 4.89e-43 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220480 | A0A072VAP8 | 98.083 | 313 | 6 | 0 | 1 | 313 | 1 | 313 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220480 | Msa0261810 | 0.822791 | 1.961175e-53 | -8.615850e-47 |
| Msa0220480 | Msa0299640 | 0.878430 | 2.827303e-69 | -8.615850e-47 |
| Msa0220480 | Msa0299660 | 0.837322 | 5.565062e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220480 | MtrunA17_Chr2g0324161 | 98.083 | 313 | 6 | 0 | 1 | 313 | 1 | 313 | 0.0 | 633 |
| Msa0220480 | MtrunA17_Chr2g0324141 | 90.735 | 313 | 29 | 0 | 1 | 313 | 1 | 313 | 0.0 | 587 |
| Msa0220480 | MtrunA17_Chr4g0047681 | 62.821 | 312 | 115 | 1 | 1 | 312 | 1 | 311 | 6.97e-146 | 412 |
| Msa0220480 | MtrunA17_Chr4g0047701 | 59.936 | 312 | 124 | 1 | 1 | 312 | 1 | 311 | 3.04e-142 | 403 |
| Msa0220480 | MtrunA17_Chr7g0272481 | 37.695 | 321 | 186 | 7 | 1 | 310 | 1 | 318 | 6.20e-69 | 217 |
| Msa0220480 | MtrunA17_Chr7g0272531 | 37.383 | 321 | 187 | 7 | 1 | 310 | 31 | 348 | 7.28e-67 | 213 |
| Msa0220480 | MtrunA17_Chr7g0272451 | 37.188 | 320 | 186 | 8 | 1 | 310 | 1 | 315 | 1.44e-66 | 211 |
| Msa0220480 | MtrunA17_Chr7g0272181 | 37.383 | 321 | 187 | 7 | 1 | 310 | 1 | 318 | 1.74e-66 | 211 |
| Msa0220480 | MtrunA17_Chr7g0272431 | 37.152 | 323 | 185 | 8 | 1 | 310 | 1 | 318 | 2.18e-66 | 211 |
| Msa0220480 | MtrunA17_Chr7g0272501 | 36.449 | 321 | 190 | 7 | 1 | 310 | 1 | 318 | 4.51e-65 | 207 |
| Msa0220480 | MtrunA17_Chr7g0272171 | 36.137 | 321 | 191 | 7 | 1 | 310 | 1 | 318 | 7.17e-65 | 207 |
| Msa0220480 | MtrunA17_Chr7g0269471 | 36.449 | 321 | 188 | 8 | 1 | 310 | 1 | 316 | 8.86e-65 | 206 |
| Msa0220480 | MtrunA17_Chr8g0372491 | 34.579 | 321 | 198 | 6 | 1 | 313 | 3 | 319 | 6.72e-64 | 204 |
| Msa0220480 | MtrunA17_Chr4g0000111 | 36.503 | 326 | 186 | 9 | 1 | 310 | 1 | 321 | 2.59e-63 | 203 |
| Msa0220480 | MtrunA17_Chr7g0272441 | 35.514 | 321 | 193 | 7 | 1 | 310 | 1 | 318 | 3.86e-63 | 202 |
| Msa0220480 | MtrunA17_Chr4g0067581 | 34.268 | 321 | 197 | 8 | 1 | 310 | 37 | 354 | 1.05e-58 | 192 |
| Msa0220480 | MtrunA17_Chr7g0272471 | 41.667 | 156 | 87 | 2 | 1 | 152 | 1 | 156 | 7.11e-38 | 132 |
| Msa0220480 | MtrunA17_Chr1g0192291 | 44.186 | 129 | 71 | 1 | 1 | 129 | 1 | 128 | 4.31e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220480 | AT4G02340.1 | 36.677 | 319 | 189 | 7 | 1 | 310 | 1 | 315 | 2.03e-66 | 211 |
| Msa0220480 | AT3G51000.1 | 35.737 | 319 | 194 | 6 | 3 | 312 | 4 | 320 | 1.95e-61 | 198 |
| Msa0220480 | AT3G05600.1 | 36.391 | 327 | 187 | 10 | 1 | 310 | 1 | 323 | 1.07e-60 | 197 |
| Msa0220480 | AT4G15960.1 | 34.049 | 326 | 196 | 10 | 1 | 310 | 51 | 373 | 4.93e-56 | 186 |
| Msa0220480 | AT2G26740.1 | 31.677 | 322 | 203 | 8 | 4 | 310 | 1 | 320 | 4.62e-48 | 164 |
| Msa0220480 | AT4G15955.3 | 31.385 | 325 | 177 | 10 | 3 | 308 | 4 | 301 | 6.04e-47 | 160 |
| Msa0220480 | AT2G26750.1 | 30.721 | 319 | 205 | 8 | 4 | 308 | 1 | 317 | 4.05e-46 | 159 |
| Msa0220480 | AT3G05600.2 | 36.327 | 245 | 144 | 7 | 1 | 235 | 1 | 243 | 1.20e-45 | 155 |
| Msa0220480 | AT4G15955.2 | 36.571 | 175 | 97 | 5 | 3 | 163 | 4 | 178 | 1.05e-30 | 114 |
| Msa0220480 | AT4G15955.1 | 36.527 | 167 | 92 | 5 | 3 | 155 | 4 | 170 | 8.07e-28 | 107 |
| Msa0220480 | AT4G12830.1 | 24.917 | 301 | 167 | 11 | 28 | 313 | 136 | 392 | 5.06e-14 | 72.4 |
Find 88 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATGTATACCATATTTC+TGG | 0.204004 | 2_1:-68910043 | None:intergenic |
| TACATGGATTTCCAGAAATA+TGG | 0.250760 | 2_1:+68910032 | Msa0220480:CDS |
| TTGATGTTAAATCAGTTATA+AGG | 0.281687 | 2_1:+68911474 | Msa0220480:CDS |
| CTGTCTGCATCTGCACATTA+AGG | 0.290921 | 2_1:+68909739 | Msa0220480:five_prime_UTR |
| TGCACAAAATGACTTCCTTC+TGG | 0.292605 | 2_1:-68912172 | None:intergenic |
| TGGCTTCAGATTTGCATTGC+AGG | 0.296497 | 2_1:+68911643 | Msa0220480:CDS |
| GACTATTGTTTCAACTTTCC+TGG | 0.300400 | 2_1:+68912082 | Msa0220480:CDS |
| CGTTCCTGCACTGCTGATAA+TGG | 0.304268 | 2_1:+68912051 | Msa0220480:CDS |
| CGTTTACTTTAGGATCAATT+AGG | 0.307917 | 2_1:-68912030 | None:intergenic |
| GAGTTGTTGAAATTTCTTAT+TGG | 0.319916 | 2_1:-68912383 | None:intergenic |
| CTAGTAATATAGAAGCCTTT+TGG | 0.341259 | 2_1:-68911226 | None:intergenic |
| CATGGTGGGAGGGGAGTAGA+TGG | 0.344585 | 2_1:-68911572 | None:intergenic |
| ATGAGCTTGTTCACTTCCTC+TGG | 0.363781 | 2_1:-68912205 | None:intergenic |
| AGTGCAGGAACGTTTACTTT+AGG | 0.366082 | 2_1:-68912040 | None:intergenic |
| CACCGGAGTCTTTACCAATA+AGG | 0.375137 | 2_1:-68911090 | None:intergenic |
| ATCATATACTTTGTTTATCA+AGG | 0.383460 | 2_1:-68912237 | None:intergenic |
| TTGAGACTTGATTACCTGTA+TGG | 0.388665 | 2_1:-68911668 | None:intergenic |
| ATGTTCTCCATCTTTGATGC+TGG | 0.393803 | 2_1:-68909846 | None:intergenic |
| GGGAGGGCAGAAGCAGATTT+CGG | 0.403797 | 2_1:+68911446 | Msa0220480:CDS |
| GGCATTCCTTTCATGAATCC+TGG | 0.405213 | 2_1:+68911175 | Msa0220480:CDS |
| GCCTTTGATTCTAGAGGCTA+TGG | 0.410916 | 2_1:+68910109 | Msa0220480:CDS |
| AAGCTCCATGTAGCTGAGAT+TGG | 0.413032 | 2_1:+68909900 | Msa0220480:CDS |
| TTGAAATTTCTTATTGGAAA+GGG | 0.426328 | 2_1:-68912377 | None:intergenic |
| TATGATTGTGATTGTGGTTG+TGG | 0.426626 | 2_1:+68912254 | Msa0220480:exon |
| GTAGCATCTCTCATAACTTT+AGG | 0.427018 | 2_1:+68911154 | Msa0220480:CDS |
| CAAAAGGCTTCTATATTACT+AGG | 0.434730 | 2_1:+68911227 | Msa0220480:CDS |
| CATTTGCAACAGCAATCATT+TGG | 0.438176 | 2_1:-68910069 | None:intergenic |
| ATATAAATGATTTCTAAGTC+TGG | 0.443671 | 2_1:-68912148 | None:intergenic |
| TCCATCTTTGATGCTGGATG+AGG | 0.449578 | 2_1:-68909840 | None:intergenic |
| ATGATTGCTGTTGCAAATGC+TGG | 0.455512 | 2_1:+68910073 | Msa0220480:CDS |
| AGTAAACTAATTCAGGAGCC+TGG | 0.459230 | 2_1:+68911425 | Msa0220480:intron |
| TCTTGATCATCACTTGCTAC+TGG | 0.459301 | 2_1:-68911530 | None:intergenic |
| TTGCATTGCAGGTTCCATAC+AGG | 0.463920 | 2_1:+68911654 | Msa0220480:CDS |
| CATGTAGCTGAGATTGGAAC+TGG | 0.474162 | 2_1:+68909906 | Msa0220480:CDS |
| AGAAATTTCAACAACTCTGT+AGG | 0.490036 | 2_1:+68912389 | Msa0220480:three_prime_UTR |
| GTTCCTGCACTGCTGATAAT+GGG | 0.492452 | 2_1:+68912052 | Msa0220480:CDS |
| CAGTTCCAATCTCAGCTACA+TGG | 0.495798 | 2_1:-68909905 | None:intergenic |
| TCACAGAACCATGGTGGGAG+GGG | 0.495808 | 2_1:-68911581 | None:intergenic |
| CGGATGTAGTCTTCCATGCC+AGG | 0.497187 | 2_1:-68912100 | None:intergenic |
| CAGAACCATCTTCTCCCAAA+AGG | 0.498875 | 2_1:+68911211 | Msa0220480:CDS |
| TCACCCATTATCAGCAGTGC+AGG | 0.503679 | 2_1:-68912055 | None:intergenic |
| TTCTGGATTGCAGAAGGACC+AGG | 0.507304 | 2_1:-68911193 | None:intergenic |
| TTGTTTCAACTTTCCTGGCA+TGG | 0.510500 | 2_1:+68912087 | Msa0220480:CDS |
| TTCCTTATTGGTAAAGACTC+CGG | 0.510594 | 2_1:+68911088 | Msa0220480:CDS |
| AAATCTGCTTCTGCCCTCCC+AGG | 0.524619 | 2_1:-68911443 | None:intergenic |
| ACCTCATCCAGCATCAAAGA+TGG | 0.525795 | 2_1:+68909839 | Msa0220480:exon |
| GTTGAAATTTCTTATTGGAA+AGG | 0.526398 | 2_1:-68912378 | None:intergenic |
| AAGTGATGATCAAGAAATCA+TGG | 0.529207 | 2_1:+68911538 | Msa0220480:CDS |
| CTTCTATATTACTAGGTGGC+AGG | 0.532497 | 2_1:+68911234 | Msa0220480:CDS |
| TTCCAGAAATATGGTATACA+TGG | 0.532909 | 2_1:+68910041 | Msa0220480:CDS |
| GCTATTGCCTTTGATTCTAG+AGG | 0.536081 | 2_1:+68910103 | Msa0220480:CDS |
| TCCATAGCCTCTAGAATCAA+AGG | 0.546310 | 2_1:-68910110 | None:intergenic |
| AAAGTATATGATTGTGATTG+TGG | 0.548979 | 2_1:+68912248 | Msa0220480:exon |
| GGTGTGTGAGGTAGTTATAA+TGG | 0.549969 | 2_1:-68909819 | None:intergenic |
| TCACTTCTACATGACTGTGT+TGG | 0.551579 | 2_1:-68909869 | None:intergenic |
| GTAAACTAATTCAGGAGCCT+GGG | 0.554497 | 2_1:+68911426 | Msa0220480:intron |
| CTCACAGAACCATGGTGGGA+GGG | 0.563059 | 2_1:-68911582 | None:intergenic |
| GAAATCATTTATATTCCAGA+AGG | 0.563505 | 2_1:+68912157 | Msa0220480:CDS |
| TGAGCTTGTTCACTTCCTCT+GGG | 0.566276 | 2_1:-68912204 | None:intergenic |
| AGGTCTCTCACAGTGGAAAG+TGG | 0.566949 | 2_1:+68912007 | Msa0220480:intron |
| AACTAATTCAGGAGCCTGGG+AGG | 0.583125 | 2_1:+68911429 | Msa0220480:intron |
| TGGAAGACTACATCCGAAGT+GGG | 0.590452 | 2_1:+68912107 | Msa0220480:CDS |
| GGACCTTGTTGATGAAGTCA+AGG | 0.590593 | 2_1:+68910174 | Msa0220480:CDS |
| ACACAGTCATGTAGAAGTGA+AGG | 0.592451 | 2_1:+68909872 | Msa0220480:CDS |
| AGATGGTTCTGGATTGCAGA+AGG | 0.595396 | 2_1:-68911199 | None:intergenic |
| TATACTCTTCTCTAAAACTG+AGG | 0.607017 | 2_1:+68911505 | Msa0220480:CDS |
| AAGATTTGCTACAATGGCAC+CGG | 0.607315 | 2_1:-68911107 | None:intergenic |
| GAAGGACCAGGATTCATGAA+AGG | 0.609615 | 2_1:-68911181 | None:intergenic |
| CCTCACAGAACCATGGTGGG+AGG | 0.610962 | 2_1:-68911583 | None:intergenic |
| ATGGTGGGAGGGGAGTAGAT+GGG | 0.615799 | 2_1:-68911571 | None:intergenic |
| CTTCCTCACAGAACCATGGT+GGG | 0.625887 | 2_1:-68911586 | None:intergenic |
| ATGGAAGACTACATCCGAAG+TGG | 0.631732 | 2_1:+68912106 | Msa0220480:CDS |
| ACTAATTCAGGAGCCTGGGA+GGG | 0.638834 | 2_1:+68911430 | Msa0220480:intron |
| CATCTACTCCCCTCCCACCA+TGG | 0.640005 | 2_1:+68911573 | Msa0220480:CDS |
| AGGTACAAGATTTGCTACAA+TGG | 0.649014 | 2_1:-68911113 | None:intergenic |
| GATCCTTGACTTCATCAACA+AGG | 0.650778 | 2_1:-68910177 | None:intergenic |
| CACAGTCATGTAGAAGTGAA+GGG | 0.655684 | 2_1:+68909873 | Msa0220480:CDS |
| GATGCTGGATGAGGTGTGTG+AGG | 0.657763 | 2_1:-68909831 | None:intergenic |
| TAGAATCAAAGGCAATAGCA+CGG | 0.658163 | 2_1:-68910099 | None:intergenic |
| CCTCCCACCATGGTTCTGTG+AGG | 0.659213 | 2_1:+68911583 | Msa0220480:CDS |
| TCTTCCTCACAGAACCATGG+TGG | 0.660902 | 2_1:-68911587 | None:intergenic |
| AGACTACATCCGAAGTGGGG+CGG | 0.665888 | 2_1:+68912111 | Msa0220480:CDS |
| AAGTCTTCCTCACAGAACCA+TGG | 0.674113 | 2_1:-68911590 | None:intergenic |
| GGAAGACTACATCCGAAGTG+GGG | 0.697396 | 2_1:+68912108 | Msa0220480:CDS |
| AGATACATTAGGTATCAACA+AGG | 0.697682 | 2_1:+68910204 | Msa0220480:CDS |
| TCCACACAGGTCTCTCACAG+TGG | 0.707979 | 2_1:+68912000 | Msa0220480:intron |
| AAGGCTTCTATATTACTAGG+TGG | 0.726236 | 2_1:+68911230 | Msa0220480:CDS |
| TGTGCATGAACAATTCCCAG+AGG | 0.744075 | 2_1:+68912189 | Msa0220480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGAATATTTTTTTATATA+AGG | - | chr2_1:68909945-68909964 | None:intergenic | 10.0% |
| !! | GTGATAAAATTTATTTATGT+TGG | - | chr2_1:68910279-68910298 | None:intergenic | 15.0% |
| !! | CAAACTTAATATTTATAAGA+AGG | - | chr2_1:68911376-68911395 | None:intergenic | 15.0% |
| !! | CTTCTTATAAATATTAAGTT+TGG | + | chr2_1:68911374-68911393 | Msa0220480:intron | 15.0% |
| !!! | AACAATATTTTTGTTTGTGT+AGG | + | chr2_1:68909989-68910008 | Msa0220480:intron | 20.0% |
| !!! | AGAAACTAAGAATTGTTTTA+TGG | + | chr2_1:68910376-68910395 | Msa0220480:intron | 20.0% |
| !! | AAATATTAGTAATGAGTTGT+TGG | + | chr2_1:68910448-68910467 | Msa0220480:intron | 20.0% |
| !!! | AAAACAACACCTATAATTTT+GGG | - | chr2_1:68910770-68910789 | None:intergenic | 20.0% |
| !! | ATAAGCACTTAAAATTGTAT+TGG | - | chr2_1:68910840-68910859 | None:intergenic | 20.0% |
| !!! | TAATAAGACTCTTTTGATTA+AGG | + | chr2_1:68911008-68911027 | Msa0220480:intron | 20.0% |
| !!! | CAATTTTAATTGCTTTTATC+AGG | + | chr2_1:68911063-68911082 | Msa0220480:intron | 20.0% |
| !! | GAAGAAGAAATAAATGATTA+TGG | - | chr2_1:68911273-68911292 | None:intergenic | 20.0% |
| !! | TTGATGTTAAATCAGTTATA+AGG | + | chr2_1:68911474-68911493 | Msa0220480:CDS | 20.0% |
| !! | ATATTCTGTAAACAATTTGA+TGG | - | chr2_1:68911887-68911906 | None:intergenic | 20.0% |
| !! | ATATAAATGATTTCTAAGTC+TGG | - | chr2_1:68912151-68912170 | None:intergenic | 20.0% |
| !!! | ATCATATACTTTGTTTATCA+AGG | - | chr2_1:68912240-68912259 | None:intergenic | 20.0% |
| !! | TTGAAATTTCTTATTGGAAA+GGG | - | chr2_1:68912380-68912399 | None:intergenic | 20.0% |
| ! | AAGAGAAAAAAGTCAACAAA+AGG | - | chr2_1:68909795-68909814 | None:intergenic | 25.0% |
| !! | AAGGATCTTTTAGATACATT+AGG | + | chr2_1:68910193-68910212 | Msa0220480:CDS | 25.0% |
| !! | TGAAGTATGTACAGAAATTT+TGG | - | chr2_1:68910301-68910320 | None:intergenic | 25.0% |
| !! | GAAAACAACACCTATAATTT+TGG | - | chr2_1:68910771-68910790 | None:intergenic | 25.0% |
| ! | GTTGATTGTAAAATTTGTGT+TGG | + | chr2_1:68910957-68910976 | Msa0220480:intron | 25.0% |
| !! | TAGTAATATAGAAGCCTTTT+GGG | - | chr2_1:68911228-68911247 | None:intergenic | 25.0% |
| !! | GACAAAAAAGTACATATATC+TGG | + | chr2_1:68911317-68911336 | Msa0220480:intron | 25.0% |
| ! | ACTATTGAGTAAACTAATTC+AGG | + | chr2_1:68911418-68911437 | Msa0220480:intron | 25.0% |
| ! | CAACTTAAAATGCTCTTTAA+TGG | + | chr2_1:68911695-68911714 | Msa0220480:intron | 25.0% |
| ! | TTAAAATGCTCTTTAATGGA+TGG | + | chr2_1:68911699-68911718 | Msa0220480:intron | 25.0% |
| ! | GAAATCATTTATATTCCAGA+AGG | + | chr2_1:68912157-68912176 | Msa0220480:CDS | 25.0% |
| ! | AAAGTATATGATTGTGATTG+TGG | + | chr2_1:68912248-68912267 | Msa0220480:exon | 25.0% |
| ! | GTTGAAATTTCTTATTGGAA+AGG | - | chr2_1:68912381-68912400 | None:intergenic | 25.0% |
| ! | GAGTTGTTGAAATTTCTTAT+TGG | - | chr2_1:68912386-68912405 | None:intergenic | 25.0% |
| TACATGGATTTCCAGAAATA+TGG | + | chr2_1:68910032-68910051 | Msa0220480:CDS | 30.0% | |
| TTCCAGAAATATGGTATACA+TGG | + | chr2_1:68910041-68910060 | Msa0220480:CDS | 30.0% | |
| ACCAGAAAAAGCAACTATAA+TGG | + | chr2_1:68910153-68910172 | Msa0220480:CDS | 30.0% | |
| !!! | TCCATTATAGTTGCTTTTTC+TGG | - | chr2_1:68910157-68910176 | None:intergenic | 30.0% |
| AGATACATTAGGTATCAACA+AGG | + | chr2_1:68910204-68910223 | Msa0220480:CDS | 30.0% | |
| TATGTTGGAGATACTATACT+AGG | - | chr2_1:68910264-68910283 | None:intergenic | 30.0% | |
| ACTTCAGCTTAGATATAATC+AGG | + | chr2_1:68910315-68910334 | Msa0220480:intron | 30.0% | |
| ACACCTTTGATCATAAGTAT+TGG | - | chr2_1:68910487-68910506 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr2_1:68910543-68910562 | Msa0220480:intron | 30.0% | |
| ATAAGTGTTAAGGGAGATAA+TGG | - | chr2_1:68910719-68910738 | None:intergenic | 30.0% | |
| GGAAGAAACATAAGTGTTAA+GGG | - | chr2_1:68910728-68910747 | None:intergenic | 30.0% | |
| !! | CTATAATTTTGGGAGTGATA+GGG | - | chr2_1:68910760-68910779 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTCCACTAAAAT+CGG | + | chr2_1:68910780-68910799 | Msa0220480:intron | 30.0% |
| ATGAAAGTTGAGATTTCAGA+GGG | + | chr2_1:68910804-68910823 | Msa0220480:intron | 30.0% | |
| ! | CTTATGATCTATGATAGTGT+AGG | + | chr2_1:68910893-68910912 | Msa0220480:intron | 30.0% |
| GTAAAATTTGTGTTGGAAGA+AGG | + | chr2_1:68910964-68910983 | Msa0220480:intron | 30.0% | |
| !!! | AACGTTGTCTGATAGTTTTT+TGG | + | chr2_1:68911035-68911054 | Msa0220480:intron | 30.0% |
| ! | TTTTATCAGGCTTTCCTTAT+TGG | + | chr2_1:68911076-68911095 | Msa0220480:intron | 30.0% |
| ! | CTAGTAATATAGAAGCCTTT+TGG | - | chr2_1:68911229-68911248 | None:intergenic | 30.0% |
| CAAAAGGCTTCTATATTACT+AGG | + | chr2_1:68911227-68911246 | Msa0220480:CDS | 30.0% | |
| ! | GGAAAAAAAGTACGTGTATT+TGG | - | chr2_1:68911355-68911374 | None:intergenic | 30.0% |
| !! | TATACTCTTCTCTAAAACTG+AGG | + | chr2_1:68911505-68911524 | Msa0220480:CDS | 30.0% |
| AAGTGATGATCAAGAAATCA+TGG | + | chr2_1:68911538-68911557 | Msa0220480:CDS | 30.0% | |
| GCATCACTATATGAAAAATC+TGG | + | chr2_1:68911623-68911642 | Msa0220480:CDS | 30.0% | |
| CTGTAAACAATTTGATGGAA+GGG | - | chr2_1:68911882-68911901 | None:intergenic | 30.0% | |
| TCTGTAAACAATTTGATGGA+AGG | - | chr2_1:68911883-68911902 | None:intergenic | 30.0% | |
| !! | CGTTTACTTTAGGATCAATT+AGG | - | chr2_1:68912033-68912052 | None:intergenic | 30.0% |
| AAAATAATTTCCATGTGTGC+TGG | + | chr2_1:68912313-68912332 | Msa0220480:intron | 30.0% | |
| AGAAATTTCAACAACTCTGT+AGG | + | chr2_1:68912389-68912408 | Msa0220480:three_prime_UTR | 30.0% | |
| ! | AAAGCAGTGGTTTTCATACA+TGG | + | chr2_1:68910016-68910035 | Msa0220480:CDS | 35.0% |
| CTCCATGTATACCATATTTC+TGG | - | chr2_1:68910046-68910065 | None:intergenic | 35.0% | |
| CATTTGCAACAGCAATCATT+TGG | - | chr2_1:68910072-68910091 | None:intergenic | 35.0% | |
| TAGAATCAAAGGCAATAGCA+CGG | - | chr2_1:68910102-68910121 | None:intergenic | 35.0% | |
| TATGGACAAAACTTACCTTC+AGG | + | chr2_1:68910394-68910413 | Msa0220480:intron | 35.0% | |
| GCACCAATACTTATGATCAA+AGG | + | chr2_1:68910481-68910500 | Msa0220480:intron | 35.0% | |
| !!! | AGACACACCTTTTTTTTTGG+TGG | - | chr2_1:68910591-68910610 | None:intergenic | 35.0% |
| ! | ACCAAAAAAAAAGGTGTGTC+TGG | + | chr2_1:68910590-68910609 | Msa0220480:intron | 35.0% |
| !!! | ACCAGACACACCTTTTTTTT+TGG | - | chr2_1:68910594-68910613 | None:intergenic | 35.0% |
| GGGAAGAAACATAAGTGTTA+AGG | - | chr2_1:68910729-68910748 | None:intergenic | 35.0% | |
| !! | CCTATAATTTTGGGAGTGAT+AGG | - | chr2_1:68910761-68910780 | None:intergenic | 35.0% |
| CCTATCACTCCCAAAATTAT+AGG | + | chr2_1:68910758-68910777 | Msa0220480:intron | 35.0% | |
| !!! | AACTTTCATGCCGATTTTAG+TGG | - | chr2_1:68910793-68910812 | None:intergenic | 35.0% |
| CATGAAAGTTGAGATTTCAG+AGG | + | chr2_1:68910803-68910822 | Msa0220480:intron | 35.0% | |
| ! | TCATAGATCATAAGTGCTGT+AGG | - | chr2_1:68910887-68910906 | None:intergenic | 35.0% |
| TTCCTTATTGGTAAAGACTC+CGG | + | chr2_1:68911088-68911107 | Msa0220480:CDS | 35.0% | |
| !! | AGGTACAAGATTTGCTACAA+TGG | - | chr2_1:68911116-68911135 | None:intergenic | 35.0% |
| !!! | ATGAGAGATGCTACTTTTTC+TGG | - | chr2_1:68911148-68911167 | None:intergenic | 35.0% |
| GTAGCATCTCTCATAACTTT+AGG | + | chr2_1:68911154-68911173 | Msa0220480:CDS | 35.0% | |
| AAGGCTTCTATATTACTAGG+TGG | + | chr2_1:68911230-68911249 | Msa0220480:CDS | 35.0% | |
| TTGAGACTTGATTACCTGTA+TGG | - | chr2_1:68911671-68911690 | None:intergenic | 35.0% | |
| ! | ACTACGTTTTTCTTTTGGCA+AGG | - | chr2_1:68911758-68911777 | None:intergenic | 35.0% |
| TGCCAAAAGAAAAACGTAGT+TGG | + | chr2_1:68911758-68911777 | Msa0220480:intron | 35.0% | |
| GCCAAAAGAAAAACGTAGTT+GGG | + | chr2_1:68911759-68911778 | Msa0220480:intron | 35.0% | |
| ! | TCCCAACTACGTTTTTCTTT+TGG | - | chr2_1:68911763-68911782 | None:intergenic | 35.0% |
| AAAAGAAAAACGTAGTTGGG+AGG | + | chr2_1:68911762-68911781 | Msa0220480:intron | 35.0% | |
| AAACTGACTAACCACCTTTA+GGG | - | chr2_1:68911796-68911815 | None:intergenic | 35.0% | |
| TAAACTGACTAACCACCTTT+AGG | - | chr2_1:68911797-68911816 | None:intergenic | 35.0% | |
| CCAACGTAAAAATGCATTTG+AGG | - | chr2_1:68911822-68911841 | None:intergenic | 35.0% | |
| ! | CCTCAAATGCATTTTTACGT+TGG | + | chr2_1:68911819-68911838 | Msa0220480:intron | 35.0% |
| ATATACACTGTCAATGTGTG+AGG | - | chr2_1:68911946-68911965 | None:intergenic | 35.0% | |
| ACATTGTTTATGATCCACAC+AGG | + | chr2_1:68911987-68912006 | Msa0220480:intron | 35.0% | |
| GACTATTGTTTCAACTTTCC+TGG | + | chr2_1:68912082-68912101 | Msa0220480:CDS | 35.0% | |
| TATGATTGTGATTGTGGTTG+TGG | + | chr2_1:68912254-68912273 | Msa0220480:exon | 35.0% | |
| GTCTCATGCTTAATGTTGTA+TGG | + | chr2_1:68912290-68912309 | Msa0220480:intron | 35.0% | |
| GGTGTGTGAGGTAGTTATAA+TGG | - | chr2_1:68909822-68909841 | None:intergenic | 40.0% | |
| ATGTTCTCCATCTTTGATGC+TGG | - | chr2_1:68909849-68909868 | None:intergenic | 40.0% | |
| TCACTTCTACATGACTGTGT+TGG | - | chr2_1:68909872-68909891 | None:intergenic | 40.0% | |
| ACACAGTCATGTAGAAGTGA+AGG | + | chr2_1:68909872-68909891 | Msa0220480:CDS | 40.0% | |
| CACAGTCATGTAGAAGTGAA+GGG | + | chr2_1:68909873-68909892 | Msa0220480:CDS | 40.0% | |
| TTGTGTAGGTGAAAAAGCAG+TGG | + | chr2_1:68910003-68910022 | Msa0220480:intron | 40.0% | |
| ! | ATGATTGCTGTTGCAAATGC+TGG | + | chr2_1:68910073-68910092 | Msa0220480:CDS | 40.0% |
| GCTATTGCCTTTGATTCTAG+AGG | + | chr2_1:68910103-68910122 | Msa0220480:CDS | 40.0% | |
| !! | TCCATAGCCTCTAGAATCAA+AGG | - | chr2_1:68910113-68910132 | None:intergenic | 40.0% |
| GATCCTTGACTTCATCAACA+AGG | - | chr2_1:68910180-68910199 | None:intergenic | 40.0% | |
| !! | AAAAAGCGCTATGATCCTGA+AGG | - | chr2_1:68910412-68910431 | None:intergenic | 40.0% |
| ATGAGTTGTTGGAAACTCTG+TGG | + | chr2_1:68910459-68910478 | Msa0220480:intron | 40.0% | |
| ! | TGAGTTTAGCTCAGTTGGTA+TGG | + | chr2_1:68910521-68910540 | Msa0220480:intron | 40.0% |
| CATAAAATATGCAAGGTCCG+AGG | + | chr2_1:68910550-68910569 | Msa0220480:intron | 40.0% | |
| !!! | CACACCTTTTTTTTTGGTGG+TGG | - | chr2_1:68910588-68910607 | None:intergenic | 40.0% |
| CCGACACTAATCAAATGTGT+CGG | - | chr2_1:68910619-68910638 | None:intergenic | 40.0% | |
| CCGACACATTTGATTAGTGT+CGG | + | chr2_1:68910616-68910635 | Msa0220480:intron | 40.0% | |
| TCAGTATGTCAGTGTTTCGT+GGG | + | chr2_1:68910659-68910678 | Msa0220480:intron | 40.0% | |
| !! | AAGATTTGCTACAATGGCAC+CGG | - | chr2_1:68911110-68911129 | None:intergenic | 40.0% |
| !! | ACTTTTTCTGGATAGACAGC+AGG | - | chr2_1:68911136-68911155 | None:intergenic | 40.0% |
| CTTCTATATTACTAGGTGGC+AGG | + | chr2_1:68911234-68911253 | Msa0220480:CDS | 40.0% | |
| AGTAAACTAATTCAGGAGCC+TGG | + | chr2_1:68911425-68911444 | Msa0220480:intron | 40.0% | |
| GTAAACTAATTCAGGAGCCT+GGG | + | chr2_1:68911426-68911445 | Msa0220480:intron | 40.0% | |
| ! | TCTTGATCATCACTTGCTAC+TGG | - | chr2_1:68911533-68911552 | None:intergenic | 40.0% |
| AACTGACTAACCACCTTTAG+GGG | - | chr2_1:68911795-68911814 | None:intergenic | 40.0% | |
| AGTGCAGGAACGTTTACTTT+AGG | - | chr2_1:68912043-68912062 | None:intergenic | 40.0% | |
| TTGTTTCAACTTTCCTGGCA+TGG | + | chr2_1:68912087-68912106 | Msa0220480:CDS | 40.0% | |
| TGCACAAAATGACTTCCTTC+TGG | - | chr2_1:68912175-68912194 | None:intergenic | 40.0% | |
| CTGTCTGCATCTGCACATTA+AGG | + | chr2_1:68909739-68909758 | Msa0220480:five_prime_UTR | 45.0% | |
| ACCTCATCCAGCATCAAAGA+TGG | + | chr2_1:68909839-68909858 | Msa0220480:exon | 45.0% | |
| TCCATCTTTGATGCTGGATG+AGG | - | chr2_1:68909843-68909862 | None:intergenic | 45.0% | |
| AAGCTCCATGTAGCTGAGAT+TGG | + | chr2_1:68909900-68909919 | Msa0220480:CDS | 45.0% | |
| CAGTTCCAATCTCAGCTACA+TGG | - | chr2_1:68909908-68909927 | None:intergenic | 45.0% | |
| CATGTAGCTGAGATTGGAAC+TGG | + | chr2_1:68909906-68909925 | Msa0220480:CDS | 45.0% | |
| ! | GCCTTTGATTCTAGAGGCTA+TGG | + | chr2_1:68910109-68910128 | Msa0220480:CDS | 45.0% |
| !!! | GTTGCTTTTTCTGGTTCTGC+TGG | - | chr2_1:68910148-68910167 | None:intergenic | 45.0% |
| ! | GGACCTTGTTGATGAAGTCA+AGG | + | chr2_1:68910174-68910193 | Msa0220480:CDS | 45.0% |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | - | chr2_1:68910582-68910601 | None:intergenic | 45.0% |
| !!! | CTTTTTTTTTGGTGGTGGCC+GGG | - | chr2_1:68910583-68910602 | None:intergenic | 45.0% |
| !!! | CCTTTTTTTTTGGTGGTGGC+CGG | - | chr2_1:68910584-68910603 | None:intergenic | 45.0% |
| ACTGAGACGTCAACATGTGT+CGG | - | chr2_1:68910644-68910663 | None:intergenic | 45.0% | |
| CTCAGTATGTCAGTGTTTCG+TGG | + | chr2_1:68910658-68910677 | Msa0220480:intron | 45.0% | |
| TCGTGGGATAGAAATGCTAG+AGG | + | chr2_1:68910675-68910694 | Msa0220480:intron | 45.0% | |
| CGTGGGATAGAAATGCTAGA+GGG | + | chr2_1:68910676-68910695 | Msa0220480:intron | 45.0% | |
| GTGGGATAGAAATGCTAGAG+GGG | + | chr2_1:68910677-68910696 | Msa0220480:intron | 45.0% | |
| TGGGATAGAAATGCTAGAGG+GGG | + | chr2_1:68910678-68910697 | Msa0220480:intron | 45.0% | |
| TGGGAGTGATAGGGTTGTTT+GGG | - | chr2_1:68910751-68910770 | None:intergenic | 45.0% | |
| TTGGGAGTGATAGGGTTGTT+TGG | - | chr2_1:68910752-68910771 | None:intergenic | 45.0% | |
| GTTGGAAGAAGGTAAGTGTG+AGG | + | chr2_1:68910975-68910994 | Msa0220480:intron | 45.0% | |
| CACCGGAGTCTTTACCAATA+AGG | - | chr2_1:68911093-68911112 | None:intergenic | 45.0% | |
| GGCATTCCTTTCATGAATCC+TGG | + | chr2_1:68911175-68911194 | Msa0220480:CDS | 45.0% | |
| GAAGGACCAGGATTCATGAA+AGG | - | chr2_1:68911184-68911203 | None:intergenic | 45.0% | |
| !! | AGATGGTTCTGGATTGCAGA+AGG | - | chr2_1:68911202-68911221 | None:intergenic | 45.0% |
| !! | CTTTTGGGAGAAGATGGTTC+TGG | - | chr2_1:68911213-68911232 | None:intergenic | 45.0% |
| CAGAACCATCTTCTCCCAAA+AGG | + | chr2_1:68911211-68911230 | Msa0220480:CDS | 45.0% | |
| !! | AGAAGCCTTTTGGGAGAAGA+TGG | - | chr2_1:68911219-68911238 | None:intergenic | 45.0% |
| AAGTCTTCCTCACAGAACCA+TGG | - | chr2_1:68911593-68911612 | None:intergenic | 45.0% | |
| TGGCTTCAGATTTGCATTGC+AGG | + | chr2_1:68911643-68911662 | Msa0220480:CDS | 45.0% | |
| TTGCATTGCAGGTTCCATAC+AGG | + | chr2_1:68911654-68911673 | Msa0220480:CDS | 45.0% | |
| GTTCCTGCACTGCTGATAAT+GGG | + | chr2_1:68912052-68912071 | Msa0220480:CDS | 45.0% | |
| ATGGAAGACTACATCCGAAG+TGG | + | chr2_1:68912106-68912125 | Msa0220480:CDS | 45.0% | |
| TGGAAGACTACATCCGAAGT+GGG | + | chr2_1:68912107-68912126 | Msa0220480:CDS | 45.0% | |
| ! | AATTTTTCACCGCCCCACTT+CGG | - | chr2_1:68912123-68912142 | None:intergenic | 45.0% |
| TGTGCATGAACAATTCCCAG+AGG | + | chr2_1:68912189-68912208 | Msa0220480:CDS | 45.0% | |
| ! | TGAGCTTGTTCACTTCCTCT+GGG | - | chr2_1:68912207-68912226 | None:intergenic | 45.0% |
| ! | ATGAGCTTGTTCACTTCCTC+TGG | - | chr2_1:68912208-68912227 | None:intergenic | 45.0% |
| GATTGTGATTGTGGTTGTGG+AGG | + | chr2_1:68912257-68912276 | Msa0220480:intron | 45.0% | |
| ! | AATTTCCATGTGTGCTGGTG+TGG | + | chr2_1:68912318-68912337 | Msa0220480:intron | 45.0% |
| !!! | AAGAATATTTTTTTATATAA+GGG | - | chr2_1:68909944-68909963 | None:intergenic | 5.0% |
| CCAACTGAGCTAAACTCACG+AGG | - | chr2_1:68910519-68910538 | None:intergenic | 50.0% | |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | + | chr2_1:68910516-68910535 | Msa0220480:intron | 50.0% |
| CCGGCCACCACCAAAAAAAA+AGG | + | chr2_1:68910581-68910600 | Msa0220480:intron | 50.0% | |
| CTGAGACGTCAACATGTGTC+GGG | - | chr2_1:68910643-68910662 | None:intergenic | 50.0% | |
| GGAGTGATAGGGTTGTTTGG+GGG | - | chr2_1:68910749-68910768 | None:intergenic | 50.0% | |
| GGGAGTGATAGGGTTGTTTG+GGG | - | chr2_1:68910750-68910769 | None:intergenic | 50.0% | |
| TTCTGGATTGCAGAAGGACC+AGG | - | chr2_1:68911196-68911215 | None:intergenic | 50.0% | |
| AACTAATTCAGGAGCCTGGG+AGG | + | chr2_1:68911429-68911448 | Msa0220480:intron | 50.0% | |
| ACTAATTCAGGAGCCTGGGA+GGG | + | chr2_1:68911430-68911449 | Msa0220480:intron | 50.0% | |
| CTTCCTCACAGAACCATGGT+GGG | - | chr2_1:68911589-68911608 | None:intergenic | 50.0% | |
| TCTTCCTCACAGAACCATGG+TGG | - | chr2_1:68911590-68911609 | None:intergenic | 50.0% | |
| AGGTCTCTCACAGTGGAAAG+TGG | + | chr2_1:68912007-68912026 | Msa0220480:intron | 50.0% | |
| CGTTCCTGCACTGCTGATAA+TGG | + | chr2_1:68912051-68912070 | Msa0220480:CDS | 50.0% | |
| TCACCCATTATCAGCAGTGC+AGG | - | chr2_1:68912058-68912077 | None:intergenic | 50.0% | |
| GGAAGACTACATCCGAAGTG+GGG | + | chr2_1:68912108-68912127 | Msa0220480:CDS | 50.0% | |
| GATGCTGGATGAGGTGTGTG+AGG | - | chr2_1:68909834-68909853 | None:intergenic | 55.0% | |
| AAGGTCCGAGGTTCAAACCC+CGG | + | chr2_1:68910562-68910581 | Msa0220480:intron | 55.0% | |
| AAATCTGCTTCTGCCCTCCC+AGG | - | chr2_1:68911446-68911465 | None:intergenic | 55.0% | |
| GGGAGGGCAGAAGCAGATTT+CGG | + | chr2_1:68911446-68911465 | Msa0220480:CDS | 55.0% | |
| ! | ATGGTGGGAGGGGAGTAGAT+GGG | - | chr2_1:68911574-68911593 | None:intergenic | 55.0% |
| ! | TCACAGAACCATGGTGGGAG+GGG | - | chr2_1:68911584-68911603 | None:intergenic | 55.0% |
| ! | CTCACAGAACCATGGTGGGA+GGG | - | chr2_1:68911585-68911604 | None:intergenic | 55.0% |
| AGGAGAGACTCCCCTAAAGG+TGG | + | chr2_1:68911782-68911801 | Msa0220480:intron | 55.0% | |
| TCCACACAGGTCTCTCACAG+TGG | + | chr2_1:68912000-68912019 | Msa0220480:intron | 55.0% | |
| TCCACTGTGAGAGACCTGTG+TGG | - | chr2_1:68912004-68912023 | None:intergenic | 55.0% | |
| CGGATGTAGTCTTCCATGCC+AGG | - | chr2_1:68912103-68912122 | None:intergenic | 55.0% | |
| AGACTACATCCGAAGTGGGG+CGG | + | chr2_1:68912111-68912130 | Msa0220480:CDS | 55.0% | |
| TCACACCACACCAGCACACA+TGG | - | chr2_1:68912326-68912345 | None:intergenic | 55.0% | |
| ! | CATGGTGGGAGGGGAGTAGA+TGG | - | chr2_1:68911575-68911594 | None:intergenic | 60.0% |
| CATCTACTCCCCTCCCACCA+TGG | + | chr2_1:68911573-68911592 | Msa0220480:CDS | 60.0% | |
| ! | CCTCACAGAACCATGGTGGG+AGG | - | chr2_1:68911586-68911605 | None:intergenic | 60.0% |
| ! | CCTCCCACCATGGTTCTGTG+AGG | + | chr2_1:68911583-68911602 | Msa0220480:CDS | 60.0% |
| GGGAGGAGAGACTCCCCTAA+AGG | + | chr2_1:68911779-68911798 | Msa0220480:intron | 60.0% | |
| GGTGGCCGGGGTTTGAACCT+CGG | - | chr2_1:68910570-68910589 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 68909732 | 68912446 | 68909732 | ID=Msa0220480;Name=Msa0220480 |
| chr2_1 | mRNA | 68909732 | 68912446 | 68909732 | ID=Msa0220480-mRNA-1;Parent=Msa0220480;Name=Msa0220480-mRNA-1;_AED=0.25;_eAED=0.25;_QI=126|1|1|1|0.8|0.66|6|117|313 |
| chr2_1 | exon | 68909732 | 68909927 | 68909732 | ID=Msa0220480-mRNA-1:exon:19479;Parent=Msa0220480-mRNA-1 |
| chr2_1 | exon | 68910011 | 68910225 | 68910011 | ID=Msa0220480-mRNA-1:exon:19480;Parent=Msa0220480-mRNA-1 |
| chr2_1 | exon | 68911085 | 68911255 | 68911085 | ID=Msa0220480-mRNA-1:exon:19481;Parent=Msa0220480-mRNA-1 |
| chr2_1 | exon | 68911440 | 68911675 | 68911440 | ID=Msa0220480-mRNA-1:exon:19482;Parent=Msa0220480-mRNA-1 |
| chr2_1 | exon | 68912009 | 68912275 | 68912009 | ID=Msa0220480-mRNA-1:exon:19483;Parent=Msa0220480-mRNA-1 |
| chr2_1 | exon | 68912347 | 68912446 | 68912347 | ID=Msa0220480-mRNA-1:exon:19484;Parent=Msa0220480-mRNA-1 |
| chr2_1 | five_prime_UTR | 68909732 | 68909857 | 68909732 | ID=Msa0220480-mRNA-1:five_prime_utr;Parent=Msa0220480-mRNA-1 |
| chr2_1 | CDS | 68909858 | 68909927 | 68909858 | ID=Msa0220480-mRNA-1:cds;Parent=Msa0220480-mRNA-1 |
| chr2_1 | CDS | 68910011 | 68910225 | 68910011 | ID=Msa0220480-mRNA-1:cds;Parent=Msa0220480-mRNA-1 |
| chr2_1 | CDS | 68911085 | 68911255 | 68911085 | ID=Msa0220480-mRNA-1:cds;Parent=Msa0220480-mRNA-1 |
| chr2_1 | CDS | 68911440 | 68911675 | 68911440 | ID=Msa0220480-mRNA-1:cds;Parent=Msa0220480-mRNA-1 |
| chr2_1 | CDS | 68912009 | 68912258 | 68912009 | ID=Msa0220480-mRNA-1:cds;Parent=Msa0220480-mRNA-1 |
| chr2_1 | three_prime_UTR | 68912259 | 68912275 | 68912259 | ID=Msa0220480-mRNA-1:three_prime_utr;Parent=Msa0220480-mRNA-1 |
| chr2_1 | three_prime_UTR | 68912347 | 68912446 | 68912347 | ID=Msa0220480-mRNA-1:three_prime_utr;Parent=Msa0220480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
