AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261810 MtrunA17_Chr2g0324161 98.403 313 5 0 1 313 1 313 0.0 635
Msa0261810 MtrunA17_Chr2g0324141 91.054 313 28 0 1 313 1 313 0.0 588
Msa0261810 MtrunA17_Chr4g0047681 63.141 312 114 1 1 312 1 311 2.57e-146 414
Msa0261810 MtrunA17_Chr4g0047701 59.936 312 124 1 1 312 1 311 1.94e-142 404
Msa0261810 MtrunA17_Chr7g0272481 37.695 321 186 7 1 310 1 318 3.39e-69 218
Msa0261810 MtrunA17_Chr7g0272451 37.500 320 185 8 1 310 1 315 2.16e-67 213
Msa0261810 MtrunA17_Chr7g0272431 37.461 323 184 8 1 310 1 318 4.51e-67 212
Msa0261810 MtrunA17_Chr7g0272531 37.383 321 187 7 1 310 31 348 4.89e-67 213
Msa0261810 MtrunA17_Chr7g0272181 37.383 321 187 7 1 310 1 318 7.57e-67 212
Msa0261810 MtrunA17_Chr7g0272501 36.449 321 190 7 1 310 1 318 1.64e-65 208
Msa0261810 MtrunA17_Chr7g0269471 36.760 321 187 8 1 310 1 316 1.67e-65 208
Msa0261810 MtrunA17_Chr7g0272171 36.137 321 191 7 1 310 1 318 3.44e-65 207
Msa0261810 MtrunA17_Chr4g0000111 36.810 326 185 9 1 310 1 321 2.73e-64 205
Msa0261810 MtrunA17_Chr8g0372491 34.579 321 198 6 1 313 3 319 4.76e-64 204
Msa0261810 MtrunA17_Chr7g0272441 35.514 321 193 7 1 310 1 318 1.86e-63 203
Msa0261810 MtrunA17_Chr4g0067581 34.579 321 196 8 1 310 37 354 2.64e-59 193
Msa0261810 MtrunA17_Chr7g0272471 41.667 156 87 2 1 152 1 156 5.93e-38 132
Msa0261810 MtrunA17_Chr1g0192291 44.186 129 71 1 1 129 1 128 3.17e-35 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261810 AT4G02340.1 36.562 320 188 8 1 310 1 315 8.55e-67 212
Msa0261810 AT3G51000.1 35.737 319 194 6 3 312 4 320 1.07e-61 199
Msa0261810 AT3G05600.1 36.697 327 186 10 1 310 1 323 1.32e-61 199
Msa0261810 AT4G15960.1 34.049 326 196 10 1 310 51 373 2.60e-56 187
Msa0261810 AT2G26740.1 31.677 322 203 8 4 310 1 320 2.29e-48 164
Msa0261810 AT4G15955.3 31.385 325 177 10 3 308 4 301 3.78e-47 161
Msa0261810 AT3G05600.2 36.735 245 143 7 1 235 1 243 1.71e-46 157
Msa0261810 AT2G26750.1 30.721 319 205 8 4 308 1 317 1.95e-46 159
Msa0261810 AT4G15955.2 36.571 175 97 5 3 163 4 178 9.59e-31 114
Msa0261810 AT4G15955.1 36.527 167 92 5 3 155 4 170 6.34e-28 107
Msa0261810 AT4G12830.1 24.917 301 167 11 28 313 136 392 2.61e-14 73.2

Find 88 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATGTATACCATATTTC+TGG 0.204004 2_2:-60443678 None:intergenic
TACATGGATTTCCAGAAATA+TGG 0.250760 2_2:+60443667 Msa0261810:CDS
TTGATGTTAAATCAGTTATA+AGG 0.281687 2_2:+60445004 Msa0261810:CDS
CTGTCTGCATCTGCACATTA+AGG 0.290921 2_2:+60443374 Msa0261810:five_prime_UTR
TGCACAAAATGACTTCCTTC+TGG 0.292605 2_2:-60445703 None:intergenic
TGGCTTCAGATTTGCATTGC+AGG 0.296497 2_2:+60445173 Msa0261810:CDS
GACTACTGTTTCAACTTTCC+TGG 0.312189 2_2:+60445613 Msa0261810:CDS
GAGTTGTTGAAATTACTTAT+TGG 0.316638 2_2:-60445914 None:intergenic
CATTTACTTTAGGATCAATT+AGG 0.317017 2_2:-60445561 None:intergenic
AGTGCAGGAACATTTACTTT+AGG 0.323205 2_2:-60445571 None:intergenic
TGTTCCTGCACTGCTGATAA+TGG 0.329656 2_2:+60445582 Msa0261810:CDS
CTAGTAATGTAGAAGCCTTT+TGG 0.342223 2_2:-60444756 None:intergenic
CATGGTGGGAGGGGAGTAGA+TGG 0.344585 2_2:-60445102 None:intergenic
ATGAGCTTGTTCACTTCCTC+TGG 0.363781 2_2:-60445736 None:intergenic
CACCGGAGTCTTTACCAATA+AGG 0.375137 2_2:-60444620 None:intergenic
ATCATATACTTTGTTTATCA+AGG 0.383460 2_2:-60445768 None:intergenic
ATGTTCTCCATCTTTGATGC+TGG 0.393803 2_2:-60443481 None:intergenic
TGAGACTTTGATTACCTGTA+TGG 0.399091 2_2:-60445198 None:intergenic
GGGAGGGCAGAAGCAGATTT+CGG 0.403797 2_2:+60444976 Msa0261810:CDS
GGCATTCCTTTCATGAATCC+TGG 0.405213 2_2:+60444705 Msa0261810:CDS
GCCTTTGATTCTAGAGGCTA+TGG 0.410916 2_2:+60443744 Msa0261810:CDS
AAGCTCCATGTAGCTGAGAT+TGG 0.413032 2_2:+60443535 Msa0261810:CDS
CAAAAGGCTTCTACATTACT+AGG 0.419163 2_2:+60444757 Msa0261810:CDS
TATGATTGTGATTGTGGTTG+TGG 0.426626 2_2:+60445785 Msa0261810:exon
GTAGCATCTCTCATAACTTT+AGG 0.427018 2_2:+60444684 Msa0261810:CDS
CATTTGCAACAGCAATCATT+TGG 0.438176 2_2:-60443704 None:intergenic
ATATAAATGATTTCTAAGTC+TGG 0.443671 2_2:-60445679 None:intergenic
TCCATCTTTGATGCTGGATG+AGG 0.449578 2_2:-60443475 None:intergenic
ATGATTGCTGTTGCAAATGC+TGG 0.455512 2_2:+60443708 Msa0261810:CDS
AGTAAACTAATTCAGGAGCC+TGG 0.459230 2_2:+60444955 Msa0261810:intron
TCTTGATCATCACTTGCTAC+TGG 0.459301 2_2:-60445060 None:intergenic
TTGCATTGCAGGTTCCATAC+AGG 0.463920 2_2:+60445184 Msa0261810:CDS
TTGAAATTACTTATTGGAAA+GGG 0.470763 2_2:-60445908 None:intergenic
CATGTAGCTGAGATTGGAAC+TGG 0.474162 2_2:+60443541 Msa0261810:CDS
GTTCCTGCACTGCTGATAAT+GGG 0.482974 2_2:+60445583 Msa0261810:CDS
TCAGAGAACCATGGTGGGAG+GGG 0.492353 2_2:-60445111 None:intergenic
AGTAATTTCAACAACTCTGT+AGG 0.493363 2_2:+60445920 Msa0261810:three_prime_UTR
CAGTTCCAATCTCAGCTACA+TGG 0.495798 2_2:-60443540 None:intergenic
CGGATGTAGTCTTCCATGCC+AGG 0.497187 2_2:-60445631 None:intergenic
CAGAACCATCTTCTCCCAAA+AGG 0.498875 2_2:+60444741 Msa0261810:CDS
TCACCCATTATCAGCAGTGC+AGG 0.503679 2_2:-60445586 None:intergenic
TTCTGGATTGCAGAAGGACC+AGG 0.507304 2_2:-60444723 None:intergenic
TTCCTTATTGGTAAAGACTC+CGG 0.510594 2_2:+60444618 Msa0261810:CDS
CTGTTTCAACTTTCCTGGCA+TGG 0.511059 2_2:+60445618 Msa0261810:CDS
AAATCTGCTTCTGCCCTCCC+AGG 0.524619 2_2:-60444973 None:intergenic
ACCTCATCCAGCATCAAAGA+TGG 0.525795 2_2:+60443474 Msa0261810:exon
GTTGAAATTACTTATTGGAA+AGG 0.526398 2_2:-60445909 None:intergenic
AAGTGATGATCAAGAAATCA+TGG 0.529207 2_2:+60445068 Msa0261810:CDS
TTCCAGAAATATGGTATACA+TGG 0.532909 2_2:+60443676 Msa0261810:CDS
CTCAGAGAACCATGGTGGGA+GGG 0.535598 2_2:-60445112 None:intergenic
GCTATTGCCTTTGATTCTAG+AGG 0.536081 2_2:+60443738 Msa0261810:CDS
CTTCTACATTACTAGGTGGC+AGG 0.538576 2_2:+60444764 Msa0261810:CDS
TCCATAGCCTCTAGAATCAA+AGG 0.546310 2_2:-60443745 None:intergenic
AAAGTATATGATTGTGATTG+TGG 0.548979 2_2:+60445779 Msa0261810:exon
GGTGTGTGAGGTAGTTATAA+TGG 0.549969 2_2:-60443454 None:intergenic
TCACTTCTACATGACTGTGT+TGG 0.551579 2_2:-60443504 None:intergenic
GTAAACTAATTCAGGAGCCT+GGG 0.554497 2_2:+60444956 Msa0261810:intron
GAAATCATTTATATTCCAGA+AGG 0.563505 2_2:+60445688 Msa0261810:CDS
TGAGCTTGTTCACTTCCTCT+GGG 0.566276 2_2:-60445735 None:intergenic
AGGTCTCTCACAGTGGAAAG+TGG 0.568049 2_2:+60445538 Msa0261810:intron
AACTAATTCAGGAGCCTGGG+AGG 0.583125 2_2:+60444959 Msa0261810:intron
TGGAAGACTACATCCGAAGT+GGG 0.590452 2_2:+60445638 Msa0261810:CDS
GGACCTTGTTGATGAAGTCA+AGG 0.590593 2_2:+60443809 Msa0261810:CDS
ACACAGTCATGTAGAAGTGA+AGG 0.592451 2_2:+60443507 Msa0261810:CDS
AGATGGTTCTGGATTGCAGA+AGG 0.595396 2_2:-60444729 None:intergenic
CCTCAGAGAACCATGGTGGG+AGG 0.604144 2_2:-60445113 None:intergenic
TATACTCTTCTCTAAAACTG+AGG 0.607017 2_2:+60445035 Msa0261810:CDS
AAGATTTGCTACAATGGCAC+CGG 0.607315 2_2:-60444637 None:intergenic
GAAGGACCAGGATTCATGAA+AGG 0.609615 2_2:-60444711 None:intergenic
ATGGTGGGAGGGGAGTAGAT+GGG 0.615799 2_2:-60445101 None:intergenic
ATGGAAGACTACATCCGAAG+TGG 0.631732 2_2:+60445637 Msa0261810:CDS
CCTCCCACCATGGTTCTCTG+AGG 0.633901 2_2:+60445113 Msa0261810:CDS
ACTAATTCAGGAGCCTGGGA+GGG 0.638834 2_2:+60444960 Msa0261810:intron
CATCTACTCCCCTCCCACCA+TGG 0.640005 2_2:+60445103 Msa0261810:CDS
CTTCCTCAGAGAACCATGGT+GGG 0.642585 2_2:-60445116 None:intergenic
AGGTACAAGATTTGCTACAA+TGG 0.649014 2_2:-60444643 None:intergenic
GATCCTTGACTTCATCAACA+AGG 0.650778 2_2:-60443812 None:intergenic
CACAGTCATGTAGAAGTGAA+GGG 0.655684 2_2:+60443508 Msa0261810:CDS
GATGCTGGATGAGGTGTGTG+AGG 0.657763 2_2:-60443466 None:intergenic
TAGAATCAAAGGCAATAGCA+CGG 0.658163 2_2:-60443734 None:intergenic
AGACTACATCCGAAGTGGGG+CGG 0.665888 2_2:+60445642 Msa0261810:CDS
AAGTCTTCCTCAGAGAACCA+TGG 0.688812 2_2:-60445120 None:intergenic
TCTTCCTCAGAGAACCATGG+TGG 0.694615 2_2:-60445117 None:intergenic
GGAAGACTACATCCGAAGTG+GGG 0.697396 2_2:+60445639 Msa0261810:CDS
AGATACATTAGGTATCAACA+AGG 0.697682 2_2:+60443839 Msa0261810:CDS
TCCACGCAGGTCTCTCACAG+TGG 0.699297 2_2:+60445531 Msa0261810:intron
AAGGCTTCTACATTACTAGG+TGG 0.741389 2_2:+60444760 Msa0261810:CDS
TGTGCATGAACAATTCCCAG+AGG 0.744075 2_2:+60445720 Msa0261810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAGAATATTTTTTTATATA+AGG - chr2_2:60443580-60443599 None:intergenic 10.0%
!! GTGATAAAATTTATTTATGT+TGG - chr2_2:60443915-60443934 None:intergenic 15.0%
!! CAAACTTAATATTTATAAGA+AGG - chr2_2:60444906-60444925 None:intergenic 15.0%
!! CTTCTTATAAATATTAAGTT+TGG + chr2_2:60444904-60444923 Msa0261810:intron 15.0%
!!! AACAATATTTTTGTTTGTGT+AGG + chr2_2:60443624-60443643 Msa0261810:intron 20.0%
!!! AGAAACTAAGAATTGTTTTA+TGG + chr2_2:60444012-60444031 Msa0261810:intron 20.0%
!! AAATATTAGTAATGAGTTGT+TGG + chr2_2:60444080-60444099 Msa0261810:intron 20.0%
!!! AAAACAACACCTATAATTTT+GGG - chr2_2:60444301-60444320 None:intergenic 20.0%
!! ATAAGCACTTAAAATTGTAT+TGG - chr2_2:60444371-60444390 None:intergenic 20.0%
!!! TAATAAGACTCTTTTGATTA+AGG + chr2_2:60444538-60444557 Msa0261810:intron 20.0%
!!! CAATTTTAATTGCTTTTATC+AGG + chr2_2:60444593-60444612 Msa0261810:intron 20.0%
!! TTGATGTTAAATCAGTTATA+AGG + chr2_2:60445004-60445023 Msa0261810:CDS 20.0%
!! ATATTCTGTAAACAATTTGA+TGG - chr2_2:60445418-60445437 None:intergenic 20.0%
!! ATATAAATGATTTCTAAGTC+TGG - chr2_2:60445682-60445701 None:intergenic 20.0%
!!! ATCATATACTTTGTTTATCA+AGG - chr2_2:60445771-60445790 None:intergenic 20.0%
!! TTGAAATTACTTATTGGAAA+GGG - chr2_2:60445911-60445930 None:intergenic 20.0%
! AAGAGAAAAAAGTCAACAAA+AGG - chr2_2:60443430-60443449 None:intergenic 25.0%
!! AAGGATCTTTTAGATACATT+AGG + chr2_2:60443828-60443847 Msa0261810:CDS 25.0%
!! TGAAGTATGTACAGAAATTT+TGG - chr2_2:60443937-60443956 None:intergenic 25.0%
! ATAAGTGTTAAGAGAGATAA+TGG - chr2_2:60444250-60444269 None:intergenic 25.0%
!! GAAAACAACACCTATAATTT+TGG - chr2_2:60444302-60444321 None:intergenic 25.0%
! GTTGATTGTAAAATTTGTGT+TGG + chr2_2:60444488-60444507 Msa0261810:intron 25.0%
!! GACAAAAAAGTACATATATC+TGG + chr2_2:60444847-60444866 Msa0261810:intron 25.0%
! ACTATTGAGTAAACTAATTC+AGG + chr2_2:60444948-60444967 Msa0261810:intron 25.0%
! CAACTTAAAATGCTCTTTAA+TGG + chr2_2:60445226-60445245 Msa0261810:intron 25.0%
! TTAAAATGCTCTTTAATGGA+TGG + chr2_2:60445230-60445249 Msa0261810:intron 25.0%
!!! CATTTACTTTAGGATCAATT+AGG - chr2_2:60445564-60445583 None:intergenic 25.0%
! GAAATCATTTATATTCCAGA+AGG + chr2_2:60445688-60445707 Msa0261810:CDS 25.0%
! AAAGTATATGATTGTGATTG+TGG + chr2_2:60445779-60445798 Msa0261810:exon 25.0%
! GTTGAAATTACTTATTGGAA+AGG - chr2_2:60445912-60445931 None:intergenic 25.0%
! GAGTTGTTGAAATTACTTAT+TGG - chr2_2:60445917-60445936 None:intergenic 25.0%
TACATGGATTTCCAGAAATA+TGG + chr2_2:60443667-60443686 Msa0261810:CDS 30.0%
TTCCAGAAATATGGTATACA+TGG + chr2_2:60443676-60443695 Msa0261810:CDS 30.0%
ACCAGAAAAAGCAACTATAA+TGG + chr2_2:60443788-60443807 Msa0261810:CDS 30.0%
!!! TCCATTATAGTTGCTTTTTC+TGG - chr2_2:60443792-60443811 None:intergenic 30.0%
AGATACATTAGGTATCAACA+AGG + chr2_2:60443839-60443858 Msa0261810:CDS 30.0%
TATGTTGGAGATACTATACT+AGG - chr2_2:60443900-60443919 None:intergenic 30.0%
ACTTCAGCTTAGATATAATC+AGG + chr2_2:60443951-60443970 Msa0261810:intron 30.0%
AGCACAAAACTTATGATCAA+AGG + chr2_2:60444112-60444131 Msa0261810:intron 30.0%
!! CTATAATTTTGGGAGTGATA+GGG - chr2_2:60444291-60444310 None:intergenic 30.0%
!!! GTGTTGTTTTCCACTAAAAT+CGG + chr2_2:60444311-60444330 Msa0261810:intron 30.0%
ATGAAAGTTGAGATTTCAGA+GGG + chr2_2:60444335-60444354 Msa0261810:intron 30.0%
! CTTATGATCTATGATAGTGT+AGG + chr2_2:60444424-60444443 Msa0261810:intron 30.0%
GTAAAATTTGTGTTGGAAGA+AGG + chr2_2:60444495-60444514 Msa0261810:intron 30.0%
!!! AACGTTGTCTGATAGTTTTT+TGG + chr2_2:60444565-60444584 Msa0261810:intron 30.0%
! TTTTATCAGGCTTTCCTTAT+TGG + chr2_2:60444606-60444625 Msa0261810:intron 30.0%
! TAGTAATGTAGAAGCCTTTT+GGG - chr2_2:60444758-60444777 None:intergenic 30.0%
GAGGAAGATATAAATGATTG+TGG - chr2_2:60444803-60444822 None:intergenic 30.0%
! TAAGTCTAGAAAGAGTATAG+AGG - chr2_2:60444822-60444841 None:intergenic 30.0%
! GGAAAAAAAGTACGTGTATT+TGG - chr2_2:60444885-60444904 None:intergenic 30.0%
!! TATACTCTTCTCTAAAACTG+AGG + chr2_2:60445035-60445054 Msa0261810:CDS 30.0%
AAGTGATGATCAAGAAATCA+TGG + chr2_2:60445068-60445087 Msa0261810:CDS 30.0%
GCATCACTATATGAAAAATC+TGG + chr2_2:60445153-60445172 Msa0261810:CDS 30.0%
CTGTAAACAATTTGATGGAA+GGG - chr2_2:60445413-60445432 None:intergenic 30.0%
TCTGTAAACAATTTGATGGA+AGG - chr2_2:60445414-60445433 None:intergenic 30.0%
AAAATAATTTCCATGTGTGC+TGG + chr2_2:60445844-60445863 Msa0261810:intron 30.0%
AGTAATTTCAACAACTCTGT+AGG + chr2_2:60445920-60445939 Msa0261810:three_prime_UTR 30.0%
! AAAGCAGTGGTTTTCATACA+TGG + chr2_2:60443651-60443670 Msa0261810:CDS 35.0%
CTCCATGTATACCATATTTC+TGG - chr2_2:60443681-60443700 None:intergenic 35.0%
CATTTGCAACAGCAATCATT+TGG - chr2_2:60443707-60443726 None:intergenic 35.0%
TAGAATCAAAGGCAATAGCA+CGG - chr2_2:60443737-60443756 None:intergenic 35.0%
TATGGACAAAACTTACCTTC+AGG + chr2_2:60444030-60444049 Msa0261810:intron 35.0%
AAAAAACGCTATGATCCTGA+AGG - chr2_2:60444048-60444067 None:intergenic 35.0%
CTGACACATTTCATTAGTGT+CGG + chr2_2:60444147-60444166 Msa0261810:intron 35.0%
!! CCTATAATTTTGGGAGTGAT+AGG - chr2_2:60444292-60444311 None:intergenic 35.0%
CCTATCACTCCCAAAATTAT+AGG + chr2_2:60444289-60444308 Msa0261810:intron 35.0%
!!! AACTTTCATGCCGATTTTAG+TGG - chr2_2:60444324-60444343 None:intergenic 35.0%
CATGAAAGTTGAGATTTCAG+AGG + chr2_2:60444334-60444353 Msa0261810:intron 35.0%
! TCATAGATCATAAGTGCTGT+AGG - chr2_2:60444418-60444437 None:intergenic 35.0%
TTCCTTATTGGTAAAGACTC+CGG + chr2_2:60444618-60444637 Msa0261810:CDS 35.0%
!! AGGTACAAGATTTGCTACAA+TGG - chr2_2:60444646-60444665 None:intergenic 35.0%
!!! ATGAGAGATGCTACTTTTTC+TGG - chr2_2:60444678-60444697 None:intergenic 35.0%
GTAGCATCTCTCATAACTTT+AGG + chr2_2:60444684-60444703 Msa0261810:CDS 35.0%
! CTAGTAATGTAGAAGCCTTT+TGG - chr2_2:60444759-60444778 None:intergenic 35.0%
CAAAAGGCTTCTACATTACT+AGG + chr2_2:60444757-60444776 Msa0261810:CDS 35.0%
TGAGACTTTGATTACCTGTA+TGG - chr2_2:60445201-60445220 None:intergenic 35.0%
! ACTACGTTTTTCTTTTGGCA+AGG - chr2_2:60445289-60445308 None:intergenic 35.0%
TGCCAAAAGAAAAACGTAGT+TGG + chr2_2:60445289-60445308 Msa0261810:intron 35.0%
GCCAAAAGAAAAACGTAGTT+GGG + chr2_2:60445290-60445309 Msa0261810:intron 35.0%
! TCCCAACTACGTTTTTCTTT+TGG - chr2_2:60445294-60445313 None:intergenic 35.0%
AAAAGAAAAACGTAGTTGGG+AGG + chr2_2:60445293-60445312 Msa0261810:intron 35.0%
AAACTGACTAACCACCTTTA+GGG - chr2_2:60445327-60445346 None:intergenic 35.0%
TAAACTGACTAACCACCTTT+AGG - chr2_2:60445328-60445347 None:intergenic 35.0%
CCAACGTAAAAATGCATTTG+AGG - chr2_2:60445353-60445372 None:intergenic 35.0%
! CCTCAAATGCATTTTTACGT+TGG + chr2_2:60445350-60445369 Msa0261810:intron 35.0%
ATATACACTGTCAATGTGTG+AGG - chr2_2:60445477-60445496 None:intergenic 35.0%
AGTGCAGGAACATTTACTTT+AGG - chr2_2:60445574-60445593 None:intergenic 35.0%
TATGATTGTGATTGTGGTTG+TGG + chr2_2:60445785-60445804 Msa0261810:exon 35.0%
GTCTCATGCTTAATGTTGTA+TGG + chr2_2:60445821-60445840 Msa0261810:intron 35.0%
GGTGTGTGAGGTAGTTATAA+TGG - chr2_2:60443457-60443476 None:intergenic 40.0%
ATGTTCTCCATCTTTGATGC+TGG - chr2_2:60443484-60443503 None:intergenic 40.0%
TCACTTCTACATGACTGTGT+TGG - chr2_2:60443507-60443526 None:intergenic 40.0%
ACACAGTCATGTAGAAGTGA+AGG + chr2_2:60443507-60443526 Msa0261810:CDS 40.0%
CACAGTCATGTAGAAGTGAA+GGG + chr2_2:60443508-60443527 Msa0261810:CDS 40.0%
TTGTGTAGGTGAAAAAGCAG+TGG + chr2_2:60443638-60443657 Msa0261810:intron 40.0%
! ATGATTGCTGTTGCAAATGC+TGG + chr2_2:60443708-60443727 Msa0261810:CDS 40.0%
GCTATTGCCTTTGATTCTAG+AGG + chr2_2:60443738-60443757 Msa0261810:CDS 40.0%
!! TCCATAGCCTCTAGAATCAA+AGG - chr2_2:60443748-60443767 None:intergenic 40.0%
GATCCTTGACTTCATCAACA+AGG - chr2_2:60443815-60443834 None:intergenic 40.0%
! CTTATGATCAAAGGTGTGTC+TGG + chr2_2:60444121-60444140 Msa0261810:intron 40.0%
TCAGTATGTCAGTGTTTCGT+GGG + chr2_2:60444190-60444209 Msa0261810:intron 40.0%
!! AAGATTTGCTACAATGGCAC+CGG - chr2_2:60444640-60444659 None:intergenic 40.0%
!! ACTTTTTCTGGATAGACAGC+AGG - chr2_2:60444666-60444685 None:intergenic 40.0%
AAGGCTTCTACATTACTAGG+TGG + chr2_2:60444760-60444779 Msa0261810:CDS 40.0%
AGTAAACTAATTCAGGAGCC+TGG + chr2_2:60444955-60444974 Msa0261810:intron 40.0%
GTAAACTAATTCAGGAGCCT+GGG + chr2_2:60444956-60444975 Msa0261810:intron 40.0%
! TCTTGATCATCACTTGCTAC+TGG - chr2_2:60445063-60445082 None:intergenic 40.0%
AACTGACTAACCACCTTTAG+GGG - chr2_2:60445326-60445345 None:intergenic 40.0%
ACATTGTTTATGATCCACGC+AGG + chr2_2:60445518-60445537 Msa0261810:intron 40.0%
GACTACTGTTTCAACTTTCC+TGG + chr2_2:60445613-60445632 Msa0261810:CDS 40.0%
TGCACAAAATGACTTCCTTC+TGG - chr2_2:60445706-60445725 None:intergenic 40.0%
CTGTCTGCATCTGCACATTA+AGG + chr2_2:60443374-60443393 Msa0261810:five_prime_UTR 45.0%
ACCTCATCCAGCATCAAAGA+TGG + chr2_2:60443474-60443493 Msa0261810:exon 45.0%
TCCATCTTTGATGCTGGATG+AGG - chr2_2:60443478-60443497 None:intergenic 45.0%
AAGCTCCATGTAGCTGAGAT+TGG + chr2_2:60443535-60443554 Msa0261810:CDS 45.0%
CAGTTCCAATCTCAGCTACA+TGG - chr2_2:60443543-60443562 None:intergenic 45.0%
CATGTAGCTGAGATTGGAAC+TGG + chr2_2:60443541-60443560 Msa0261810:CDS 45.0%
! GCCTTTGATTCTAGAGGCTA+TGG + chr2_2:60443744-60443763 Msa0261810:CDS 45.0%
!!! GTTGCTTTTTCTGGTTCTGC+TGG - chr2_2:60443783-60443802 None:intergenic 45.0%
! GGACCTTGTTGATGAAGTCA+AGG + chr2_2:60443809-60443828 Msa0261810:CDS 45.0%
ACTGACACGTCAACATGTGT+CGG - chr2_2:60444175-60444194 None:intergenic 45.0%
GTCAGTATGTCAGTGTTTCG+TGG + chr2_2:60444189-60444208 Msa0261810:intron 45.0%
TCGTGGGATAGAAATGCTAG+AGG + chr2_2:60444206-60444225 Msa0261810:intron 45.0%
CGTGGGATAGAAATGCTAGA+GGG + chr2_2:60444207-60444226 Msa0261810:intron 45.0%
GTGGGATAGAAATGCTAGAG+GGG + chr2_2:60444208-60444227 Msa0261810:intron 45.0%
TGGGATAGAAATGCTAGAGG+GGG + chr2_2:60444209-60444228 Msa0261810:intron 45.0%
TGGGAGTGATAGGGTTGTTT+GGG - chr2_2:60444282-60444301 None:intergenic 45.0%
TTGGGAGTGATAGGGTTGTT+TGG - chr2_2:60444283-60444302 None:intergenic 45.0%
GTTGGAAGAAGGTAAGTGTG+AGG + chr2_2:60444506-60444525 Msa0261810:intron 45.0%
CACCGGAGTCTTTACCAATA+AGG - chr2_2:60444623-60444642 None:intergenic 45.0%
GGCATTCCTTTCATGAATCC+TGG + chr2_2:60444705-60444724 Msa0261810:CDS 45.0%
GAAGGACCAGGATTCATGAA+AGG - chr2_2:60444714-60444733 None:intergenic 45.0%
!! AGATGGTTCTGGATTGCAGA+AGG - chr2_2:60444732-60444751 None:intergenic 45.0%
!! CTTTTGGGAGAAGATGGTTC+TGG - chr2_2:60444743-60444762 None:intergenic 45.0%
CAGAACCATCTTCTCCCAAA+AGG + chr2_2:60444741-60444760 Msa0261810:CDS 45.0%
!! AGAAGCCTTTTGGGAGAAGA+TGG - chr2_2:60444749-60444768 None:intergenic 45.0%
CTTCTACATTACTAGGTGGC+AGG + chr2_2:60444764-60444783 Msa0261810:CDS 45.0%
AAGTCTTCCTCAGAGAACCA+TGG - chr2_2:60445123-60445142 None:intergenic 45.0%
TGGCTTCAGATTTGCATTGC+AGG + chr2_2:60445173-60445192 Msa0261810:CDS 45.0%
TTGCATTGCAGGTTCCATAC+AGG + chr2_2:60445184-60445203 Msa0261810:CDS 45.0%
TGTTCCTGCACTGCTGATAA+TGG + chr2_2:60445582-60445601 Msa0261810:CDS 45.0%
GTTCCTGCACTGCTGATAAT+GGG + chr2_2:60445583-60445602 Msa0261810:CDS 45.0%
CTGTTTCAACTTTCCTGGCA+TGG + chr2_2:60445618-60445637 Msa0261810:CDS 45.0%
ATGGAAGACTACATCCGAAG+TGG + chr2_2:60445637-60445656 Msa0261810:CDS 45.0%
TGGAAGACTACATCCGAAGT+GGG + chr2_2:60445638-60445657 Msa0261810:CDS 45.0%
! AATTTTTCACCGCCCCACTT+CGG - chr2_2:60445654-60445673 None:intergenic 45.0%
TGTGCATGAACAATTCCCAG+AGG + chr2_2:60445720-60445739 Msa0261810:CDS 45.0%
! TGAGCTTGTTCACTTCCTCT+GGG - chr2_2:60445738-60445757 None:intergenic 45.0%
! ATGAGCTTGTTCACTTCCTC+TGG - chr2_2:60445739-60445758 None:intergenic 45.0%
GATTGTGATTGTGGTTGTGG+AGG + chr2_2:60445788-60445807 Msa0261810:intron 45.0%
! AATTTCCATGTGTGCTGGTG+TGG + chr2_2:60445849-60445868 Msa0261810:intron 45.0%
!!! AAGAATATTTTTTTATATAA+GGG - chr2_2:60443579-60443598 None:intergenic 5.0%
CTGACACGTCAACATGTGTC+GGG - chr2_2:60444174-60444193 None:intergenic 50.0%
GGAGTGATAGGGTTGTTTGG+GGG - chr2_2:60444280-60444299 None:intergenic 50.0%
GGGAGTGATAGGGTTGTTTG+GGG - chr2_2:60444281-60444300 None:intergenic 50.0%
TTCTGGATTGCAGAAGGACC+AGG - chr2_2:60444726-60444745 None:intergenic 50.0%
AACTAATTCAGGAGCCTGGG+AGG + chr2_2:60444959-60444978 Msa0261810:intron 50.0%
ACTAATTCAGGAGCCTGGGA+GGG + chr2_2:60444960-60444979 Msa0261810:intron 50.0%
CTTCCTCAGAGAACCATGGT+GGG - chr2_2:60445119-60445138 None:intergenic 50.0%
TCTTCCTCAGAGAACCATGG+TGG - chr2_2:60445120-60445139 None:intergenic 50.0%
AGGTCTCTCACAGTGGAAAG+TGG + chr2_2:60445538-60445557 Msa0261810:intron 50.0%
TCACCCATTATCAGCAGTGC+AGG - chr2_2:60445589-60445608 None:intergenic 50.0%
GGAAGACTACATCCGAAGTG+GGG + chr2_2:60445639-60445658 Msa0261810:CDS 50.0%
GATGCTGGATGAGGTGTGTG+AGG - chr2_2:60443469-60443488 None:intergenic 55.0%
AAATCTGCTTCTGCCCTCCC+AGG - chr2_2:60444976-60444995 None:intergenic 55.0%
GGGAGGGCAGAAGCAGATTT+CGG + chr2_2:60444976-60444995 Msa0261810:CDS 55.0%
! ATGGTGGGAGGGGAGTAGAT+GGG - chr2_2:60445104-60445123 None:intergenic 55.0%
! TCAGAGAACCATGGTGGGAG+GGG - chr2_2:60445114-60445133 None:intergenic 55.0%
! CTCAGAGAACCATGGTGGGA+GGG - chr2_2:60445115-60445134 None:intergenic 55.0%
AGGAGAGACTCCCCTAAAGG+TGG + chr2_2:60445313-60445332 Msa0261810:intron 55.0%
CGGATGTAGTCTTCCATGCC+AGG - chr2_2:60445634-60445653 None:intergenic 55.0%
AGACTACATCCGAAGTGGGG+CGG + chr2_2:60445642-60445661 Msa0261810:CDS 55.0%
TCACACCACACCAGCACACA+TGG - chr2_2:60445857-60445876 None:intergenic 55.0%
! CATGGTGGGAGGGGAGTAGA+TGG - chr2_2:60445105-60445124 None:intergenic 60.0%
CATCTACTCCCCTCCCACCA+TGG + chr2_2:60445103-60445122 Msa0261810:CDS 60.0%
! CCTCAGAGAACCATGGTGGG+AGG - chr2_2:60445116-60445135 None:intergenic 60.0%
CCTCCCACCATGGTTCTCTG+AGG + chr2_2:60445113-60445132 Msa0261810:CDS 60.0%
GGGAGGAGAGACTCCCCTAA+AGG + chr2_2:60445310-60445329 Msa0261810:intron 60.0%
TCCACGCAGGTCTCTCACAG+TGG + chr2_2:60445531-60445550 Msa0261810:intron 60.0%
TCCACTGTGAGAGACCTGCG+TGG - chr2_2:60445535-60445554 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 60443367 60445977 60443367 ID=Msa0261810;Name=Msa0261810
chr2_2 mRNA 60443367 60445977 60443367 ID=Msa0261810-mRNA-1;Parent=Msa0261810;Name=Msa0261810-mRNA-1;_AED=0.43;_eAED=0.43;_QI=126|1|1|1|0.8|0.66|6|117|313
chr2_2 exon 60443367 60443562 60443367 ID=Msa0261810-mRNA-1:exon:18597;Parent=Msa0261810-mRNA-1
chr2_2 exon 60443646 60443860 60443646 ID=Msa0261810-mRNA-1:exon:18598;Parent=Msa0261810-mRNA-1
chr2_2 exon 60444615 60444785 60444615 ID=Msa0261810-mRNA-1:exon:18599;Parent=Msa0261810-mRNA-1
chr2_2 exon 60444970 60445205 60444970 ID=Msa0261810-mRNA-1:exon:18600;Parent=Msa0261810-mRNA-1
chr2_2 exon 60445540 60445806 60445540 ID=Msa0261810-mRNA-1:exon:18601;Parent=Msa0261810-mRNA-1
chr2_2 exon 60445878 60445977 60445878 ID=Msa0261810-mRNA-1:exon:18602;Parent=Msa0261810-mRNA-1
chr2_2 five_prime_UTR 60443367 60443492 60443367 ID=Msa0261810-mRNA-1:five_prime_utr;Parent=Msa0261810-mRNA-1
chr2_2 CDS 60443493 60443562 60443493 ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1
chr2_2 CDS 60443646 60443860 60443646 ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1
chr2_2 CDS 60444615 60444785 60444615 ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1
chr2_2 CDS 60444970 60445205 60444970 ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1
chr2_2 CDS 60445540 60445789 60445540 ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1
chr2_2 three_prime_UTR 60445790 60445806 60445790 ID=Msa0261810-mRNA-1:three_prime_utr;Parent=Msa0261810-mRNA-1
chr2_2 three_prime_UTR 60445878 60445977 60445878 ID=Msa0261810-mRNA-1:three_prime_utr;Parent=Msa0261810-mRNA-1
Gene Sequence

>Msa0261810

ATGGAGAACATCCAACACAGTCATGTAGAAGTGAAGGGACTAAAGCTCCATGTAGCTGAGATTGGAACTGGTGAAAAAGCAGTGGTTTTCATACATGGATTTCCAGAAATATGGTATACATGGAGATACCAAATGATTGCTGTTGCAAATGCTGGATACCGTGCTATTGCCTTTGATTCTAGAGGCTATGGACTCTCTGATCATCCAGCAGAACCAGAAAAAGCAACTATAATGGACCTTGTTGATGAAGTCAAGGATCTTTTAGATACATTAGGTATCAACAAGGCTTTCCTTATTGGTAAAGACTCCGGTGCCATTGTAGCAAATCTTGTACCTGCTGTCTATCCAGAAAAAGTAGCATCTCTCATAACTTTAGGCATTCCTTTCATGAATCCTGGTCCTTCTGCAATCCAGAACCATCTTCTCCCAAAAGGCTTCTACATTACTAGGTGGCAGGAGCCTGGGAGGGCAGAAGCAGATTTCGGTCGCTTTGATGTTAAATCAGTTATAAGGAACATCTATATACTCTTCTCTAAAACTGAGGTGCCAGTAGCAAGTGATGATCAAGAAATCATGGACTTATTTAACCCATCTACTCCCCTCCCACCATGGTTCTCTGAGGAAGACTTGACAGCTTATGCATCACTATATGAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCCATACAGGTCTCTCACAGTGGAAAGTGGCCTAATTGATCCTAAAGTAAATGTTCCTGCACTGCTGATAATGGGTGAGAAAGACTACTGTTTCAACTTTCCTGGCATGGAAGACTACATCCGAAGTGGGGCGGTGAAAAATTTTGTGCCAGACTTAGAAATCATTTATATTCCAGAAGGAAGTCATTTTGTGCATGAACAATTCCCAGAGGAAGTGAACAAGCTCATCATAGAATTCCTTGATAAACAAAGTATATGA

Protein sequence

>Msa0261810

MENIQHSHVEVKGLKLHVAEIGTGEKAVVFIHGFPEIWYTWRYQMIAVANAGYRAIAFDSRGYGLSDHPAEPEKATIMDLVDEVKDLLDTLGINKAFLIGKDSGAIVANLVPAVYPEKVASLITLGIPFMNPGPSAIQNHLLPKGFYITRWQEPGRAEADFGRFDVKSVIRNIYILFSKTEVPVASDDQEIMDLFNPSTPLPPWFSEEDLTAYASLYEKSGFRFALQVPYRSLTVESGLIDPKVNVPALLIMGEKDYCFNFPGMEDYIRSGAVKNFVPDLEIIYIPEGSHFVHEQFPEEVNKLIIEFLDKQSI*