Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261810 | XP_013465074.1 | 98.403 | 313 | 5 | 0 | 1 | 313 | 1 | 313 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261810 | sp|P34913|HYES_HUMAN | 33.746 | 323 | 189 | 12 | 3 | 312 | 236 | 546 | 1.48e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261810 | A0A072VAP8 | 98.403 | 313 | 5 | 0 | 1 | 313 | 1 | 313 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220480 | Msa0261810 | 0.822791 | 1.961175e-53 | -8.615850e-47 |
| Msa0261780 | Msa0261810 | 0.958131 | 5.026005e-116 | -8.615850e-47 |
| Msa0261810 | Msa0299640 | 0.804542 | 2.054602e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261810 | MtrunA17_Chr2g0324161 | 98.403 | 313 | 5 | 0 | 1 | 313 | 1 | 313 | 0.0 | 635 |
| Msa0261810 | MtrunA17_Chr2g0324141 | 91.054 | 313 | 28 | 0 | 1 | 313 | 1 | 313 | 0.0 | 588 |
| Msa0261810 | MtrunA17_Chr4g0047681 | 63.141 | 312 | 114 | 1 | 1 | 312 | 1 | 311 | 2.57e-146 | 414 |
| Msa0261810 | MtrunA17_Chr4g0047701 | 59.936 | 312 | 124 | 1 | 1 | 312 | 1 | 311 | 1.94e-142 | 404 |
| Msa0261810 | MtrunA17_Chr7g0272481 | 37.695 | 321 | 186 | 7 | 1 | 310 | 1 | 318 | 3.39e-69 | 218 |
| Msa0261810 | MtrunA17_Chr7g0272451 | 37.500 | 320 | 185 | 8 | 1 | 310 | 1 | 315 | 2.16e-67 | 213 |
| Msa0261810 | MtrunA17_Chr7g0272431 | 37.461 | 323 | 184 | 8 | 1 | 310 | 1 | 318 | 4.51e-67 | 212 |
| Msa0261810 | MtrunA17_Chr7g0272531 | 37.383 | 321 | 187 | 7 | 1 | 310 | 31 | 348 | 4.89e-67 | 213 |
| Msa0261810 | MtrunA17_Chr7g0272181 | 37.383 | 321 | 187 | 7 | 1 | 310 | 1 | 318 | 7.57e-67 | 212 |
| Msa0261810 | MtrunA17_Chr7g0272501 | 36.449 | 321 | 190 | 7 | 1 | 310 | 1 | 318 | 1.64e-65 | 208 |
| Msa0261810 | MtrunA17_Chr7g0269471 | 36.760 | 321 | 187 | 8 | 1 | 310 | 1 | 316 | 1.67e-65 | 208 |
| Msa0261810 | MtrunA17_Chr7g0272171 | 36.137 | 321 | 191 | 7 | 1 | 310 | 1 | 318 | 3.44e-65 | 207 |
| Msa0261810 | MtrunA17_Chr4g0000111 | 36.810 | 326 | 185 | 9 | 1 | 310 | 1 | 321 | 2.73e-64 | 205 |
| Msa0261810 | MtrunA17_Chr8g0372491 | 34.579 | 321 | 198 | 6 | 1 | 313 | 3 | 319 | 4.76e-64 | 204 |
| Msa0261810 | MtrunA17_Chr7g0272441 | 35.514 | 321 | 193 | 7 | 1 | 310 | 1 | 318 | 1.86e-63 | 203 |
| Msa0261810 | MtrunA17_Chr4g0067581 | 34.579 | 321 | 196 | 8 | 1 | 310 | 37 | 354 | 2.64e-59 | 193 |
| Msa0261810 | MtrunA17_Chr7g0272471 | 41.667 | 156 | 87 | 2 | 1 | 152 | 1 | 156 | 5.93e-38 | 132 |
| Msa0261810 | MtrunA17_Chr1g0192291 | 44.186 | 129 | 71 | 1 | 1 | 129 | 1 | 128 | 3.17e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261810 | AT4G02340.1 | 36.562 | 320 | 188 | 8 | 1 | 310 | 1 | 315 | 8.55e-67 | 212 |
| Msa0261810 | AT3G51000.1 | 35.737 | 319 | 194 | 6 | 3 | 312 | 4 | 320 | 1.07e-61 | 199 |
| Msa0261810 | AT3G05600.1 | 36.697 | 327 | 186 | 10 | 1 | 310 | 1 | 323 | 1.32e-61 | 199 |
| Msa0261810 | AT4G15960.1 | 34.049 | 326 | 196 | 10 | 1 | 310 | 51 | 373 | 2.60e-56 | 187 |
| Msa0261810 | AT2G26740.1 | 31.677 | 322 | 203 | 8 | 4 | 310 | 1 | 320 | 2.29e-48 | 164 |
| Msa0261810 | AT4G15955.3 | 31.385 | 325 | 177 | 10 | 3 | 308 | 4 | 301 | 3.78e-47 | 161 |
| Msa0261810 | AT3G05600.2 | 36.735 | 245 | 143 | 7 | 1 | 235 | 1 | 243 | 1.71e-46 | 157 |
| Msa0261810 | AT2G26750.1 | 30.721 | 319 | 205 | 8 | 4 | 308 | 1 | 317 | 1.95e-46 | 159 |
| Msa0261810 | AT4G15955.2 | 36.571 | 175 | 97 | 5 | 3 | 163 | 4 | 178 | 9.59e-31 | 114 |
| Msa0261810 | AT4G15955.1 | 36.527 | 167 | 92 | 5 | 3 | 155 | 4 | 170 | 6.34e-28 | 107 |
| Msa0261810 | AT4G12830.1 | 24.917 | 301 | 167 | 11 | 28 | 313 | 136 | 392 | 2.61e-14 | 73.2 |
Find 88 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATGTATACCATATTTC+TGG | 0.204004 | 2_2:-60443678 | None:intergenic |
| TACATGGATTTCCAGAAATA+TGG | 0.250760 | 2_2:+60443667 | Msa0261810:CDS |
| TTGATGTTAAATCAGTTATA+AGG | 0.281687 | 2_2:+60445004 | Msa0261810:CDS |
| CTGTCTGCATCTGCACATTA+AGG | 0.290921 | 2_2:+60443374 | Msa0261810:five_prime_UTR |
| TGCACAAAATGACTTCCTTC+TGG | 0.292605 | 2_2:-60445703 | None:intergenic |
| TGGCTTCAGATTTGCATTGC+AGG | 0.296497 | 2_2:+60445173 | Msa0261810:CDS |
| GACTACTGTTTCAACTTTCC+TGG | 0.312189 | 2_2:+60445613 | Msa0261810:CDS |
| GAGTTGTTGAAATTACTTAT+TGG | 0.316638 | 2_2:-60445914 | None:intergenic |
| CATTTACTTTAGGATCAATT+AGG | 0.317017 | 2_2:-60445561 | None:intergenic |
| AGTGCAGGAACATTTACTTT+AGG | 0.323205 | 2_2:-60445571 | None:intergenic |
| TGTTCCTGCACTGCTGATAA+TGG | 0.329656 | 2_2:+60445582 | Msa0261810:CDS |
| CTAGTAATGTAGAAGCCTTT+TGG | 0.342223 | 2_2:-60444756 | None:intergenic |
| CATGGTGGGAGGGGAGTAGA+TGG | 0.344585 | 2_2:-60445102 | None:intergenic |
| ATGAGCTTGTTCACTTCCTC+TGG | 0.363781 | 2_2:-60445736 | None:intergenic |
| CACCGGAGTCTTTACCAATA+AGG | 0.375137 | 2_2:-60444620 | None:intergenic |
| ATCATATACTTTGTTTATCA+AGG | 0.383460 | 2_2:-60445768 | None:intergenic |
| ATGTTCTCCATCTTTGATGC+TGG | 0.393803 | 2_2:-60443481 | None:intergenic |
| TGAGACTTTGATTACCTGTA+TGG | 0.399091 | 2_2:-60445198 | None:intergenic |
| GGGAGGGCAGAAGCAGATTT+CGG | 0.403797 | 2_2:+60444976 | Msa0261810:CDS |
| GGCATTCCTTTCATGAATCC+TGG | 0.405213 | 2_2:+60444705 | Msa0261810:CDS |
| GCCTTTGATTCTAGAGGCTA+TGG | 0.410916 | 2_2:+60443744 | Msa0261810:CDS |
| AAGCTCCATGTAGCTGAGAT+TGG | 0.413032 | 2_2:+60443535 | Msa0261810:CDS |
| CAAAAGGCTTCTACATTACT+AGG | 0.419163 | 2_2:+60444757 | Msa0261810:CDS |
| TATGATTGTGATTGTGGTTG+TGG | 0.426626 | 2_2:+60445785 | Msa0261810:exon |
| GTAGCATCTCTCATAACTTT+AGG | 0.427018 | 2_2:+60444684 | Msa0261810:CDS |
| CATTTGCAACAGCAATCATT+TGG | 0.438176 | 2_2:-60443704 | None:intergenic |
| ATATAAATGATTTCTAAGTC+TGG | 0.443671 | 2_2:-60445679 | None:intergenic |
| TCCATCTTTGATGCTGGATG+AGG | 0.449578 | 2_2:-60443475 | None:intergenic |
| ATGATTGCTGTTGCAAATGC+TGG | 0.455512 | 2_2:+60443708 | Msa0261810:CDS |
| AGTAAACTAATTCAGGAGCC+TGG | 0.459230 | 2_2:+60444955 | Msa0261810:intron |
| TCTTGATCATCACTTGCTAC+TGG | 0.459301 | 2_2:-60445060 | None:intergenic |
| TTGCATTGCAGGTTCCATAC+AGG | 0.463920 | 2_2:+60445184 | Msa0261810:CDS |
| TTGAAATTACTTATTGGAAA+GGG | 0.470763 | 2_2:-60445908 | None:intergenic |
| CATGTAGCTGAGATTGGAAC+TGG | 0.474162 | 2_2:+60443541 | Msa0261810:CDS |
| GTTCCTGCACTGCTGATAAT+GGG | 0.482974 | 2_2:+60445583 | Msa0261810:CDS |
| TCAGAGAACCATGGTGGGAG+GGG | 0.492353 | 2_2:-60445111 | None:intergenic |
| AGTAATTTCAACAACTCTGT+AGG | 0.493363 | 2_2:+60445920 | Msa0261810:three_prime_UTR |
| CAGTTCCAATCTCAGCTACA+TGG | 0.495798 | 2_2:-60443540 | None:intergenic |
| CGGATGTAGTCTTCCATGCC+AGG | 0.497187 | 2_2:-60445631 | None:intergenic |
| CAGAACCATCTTCTCCCAAA+AGG | 0.498875 | 2_2:+60444741 | Msa0261810:CDS |
| TCACCCATTATCAGCAGTGC+AGG | 0.503679 | 2_2:-60445586 | None:intergenic |
| TTCTGGATTGCAGAAGGACC+AGG | 0.507304 | 2_2:-60444723 | None:intergenic |
| TTCCTTATTGGTAAAGACTC+CGG | 0.510594 | 2_2:+60444618 | Msa0261810:CDS |
| CTGTTTCAACTTTCCTGGCA+TGG | 0.511059 | 2_2:+60445618 | Msa0261810:CDS |
| AAATCTGCTTCTGCCCTCCC+AGG | 0.524619 | 2_2:-60444973 | None:intergenic |
| ACCTCATCCAGCATCAAAGA+TGG | 0.525795 | 2_2:+60443474 | Msa0261810:exon |
| GTTGAAATTACTTATTGGAA+AGG | 0.526398 | 2_2:-60445909 | None:intergenic |
| AAGTGATGATCAAGAAATCA+TGG | 0.529207 | 2_2:+60445068 | Msa0261810:CDS |
| TTCCAGAAATATGGTATACA+TGG | 0.532909 | 2_2:+60443676 | Msa0261810:CDS |
| CTCAGAGAACCATGGTGGGA+GGG | 0.535598 | 2_2:-60445112 | None:intergenic |
| GCTATTGCCTTTGATTCTAG+AGG | 0.536081 | 2_2:+60443738 | Msa0261810:CDS |
| CTTCTACATTACTAGGTGGC+AGG | 0.538576 | 2_2:+60444764 | Msa0261810:CDS |
| TCCATAGCCTCTAGAATCAA+AGG | 0.546310 | 2_2:-60443745 | None:intergenic |
| AAAGTATATGATTGTGATTG+TGG | 0.548979 | 2_2:+60445779 | Msa0261810:exon |
| GGTGTGTGAGGTAGTTATAA+TGG | 0.549969 | 2_2:-60443454 | None:intergenic |
| TCACTTCTACATGACTGTGT+TGG | 0.551579 | 2_2:-60443504 | None:intergenic |
| GTAAACTAATTCAGGAGCCT+GGG | 0.554497 | 2_2:+60444956 | Msa0261810:intron |
| GAAATCATTTATATTCCAGA+AGG | 0.563505 | 2_2:+60445688 | Msa0261810:CDS |
| TGAGCTTGTTCACTTCCTCT+GGG | 0.566276 | 2_2:-60445735 | None:intergenic |
| AGGTCTCTCACAGTGGAAAG+TGG | 0.568049 | 2_2:+60445538 | Msa0261810:intron |
| AACTAATTCAGGAGCCTGGG+AGG | 0.583125 | 2_2:+60444959 | Msa0261810:intron |
| TGGAAGACTACATCCGAAGT+GGG | 0.590452 | 2_2:+60445638 | Msa0261810:CDS |
| GGACCTTGTTGATGAAGTCA+AGG | 0.590593 | 2_2:+60443809 | Msa0261810:CDS |
| ACACAGTCATGTAGAAGTGA+AGG | 0.592451 | 2_2:+60443507 | Msa0261810:CDS |
| AGATGGTTCTGGATTGCAGA+AGG | 0.595396 | 2_2:-60444729 | None:intergenic |
| CCTCAGAGAACCATGGTGGG+AGG | 0.604144 | 2_2:-60445113 | None:intergenic |
| TATACTCTTCTCTAAAACTG+AGG | 0.607017 | 2_2:+60445035 | Msa0261810:CDS |
| AAGATTTGCTACAATGGCAC+CGG | 0.607315 | 2_2:-60444637 | None:intergenic |
| GAAGGACCAGGATTCATGAA+AGG | 0.609615 | 2_2:-60444711 | None:intergenic |
| ATGGTGGGAGGGGAGTAGAT+GGG | 0.615799 | 2_2:-60445101 | None:intergenic |
| ATGGAAGACTACATCCGAAG+TGG | 0.631732 | 2_2:+60445637 | Msa0261810:CDS |
| CCTCCCACCATGGTTCTCTG+AGG | 0.633901 | 2_2:+60445113 | Msa0261810:CDS |
| ACTAATTCAGGAGCCTGGGA+GGG | 0.638834 | 2_2:+60444960 | Msa0261810:intron |
| CATCTACTCCCCTCCCACCA+TGG | 0.640005 | 2_2:+60445103 | Msa0261810:CDS |
| CTTCCTCAGAGAACCATGGT+GGG | 0.642585 | 2_2:-60445116 | None:intergenic |
| AGGTACAAGATTTGCTACAA+TGG | 0.649014 | 2_2:-60444643 | None:intergenic |
| GATCCTTGACTTCATCAACA+AGG | 0.650778 | 2_2:-60443812 | None:intergenic |
| CACAGTCATGTAGAAGTGAA+GGG | 0.655684 | 2_2:+60443508 | Msa0261810:CDS |
| GATGCTGGATGAGGTGTGTG+AGG | 0.657763 | 2_2:-60443466 | None:intergenic |
| TAGAATCAAAGGCAATAGCA+CGG | 0.658163 | 2_2:-60443734 | None:intergenic |
| AGACTACATCCGAAGTGGGG+CGG | 0.665888 | 2_2:+60445642 | Msa0261810:CDS |
| AAGTCTTCCTCAGAGAACCA+TGG | 0.688812 | 2_2:-60445120 | None:intergenic |
| TCTTCCTCAGAGAACCATGG+TGG | 0.694615 | 2_2:-60445117 | None:intergenic |
| GGAAGACTACATCCGAAGTG+GGG | 0.697396 | 2_2:+60445639 | Msa0261810:CDS |
| AGATACATTAGGTATCAACA+AGG | 0.697682 | 2_2:+60443839 | Msa0261810:CDS |
| TCCACGCAGGTCTCTCACAG+TGG | 0.699297 | 2_2:+60445531 | Msa0261810:intron |
| AAGGCTTCTACATTACTAGG+TGG | 0.741389 | 2_2:+60444760 | Msa0261810:CDS |
| TGTGCATGAACAATTCCCAG+AGG | 0.744075 | 2_2:+60445720 | Msa0261810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGAATATTTTTTTATATA+AGG | - | chr2_2:60443580-60443599 | None:intergenic | 10.0% |
| !! | GTGATAAAATTTATTTATGT+TGG | - | chr2_2:60443915-60443934 | None:intergenic | 15.0% |
| !! | CAAACTTAATATTTATAAGA+AGG | - | chr2_2:60444906-60444925 | None:intergenic | 15.0% |
| !! | CTTCTTATAAATATTAAGTT+TGG | + | chr2_2:60444904-60444923 | Msa0261810:intron | 15.0% |
| !!! | AACAATATTTTTGTTTGTGT+AGG | + | chr2_2:60443624-60443643 | Msa0261810:intron | 20.0% |
| !!! | AGAAACTAAGAATTGTTTTA+TGG | + | chr2_2:60444012-60444031 | Msa0261810:intron | 20.0% |
| !! | AAATATTAGTAATGAGTTGT+TGG | + | chr2_2:60444080-60444099 | Msa0261810:intron | 20.0% |
| !!! | AAAACAACACCTATAATTTT+GGG | - | chr2_2:60444301-60444320 | None:intergenic | 20.0% |
| !! | ATAAGCACTTAAAATTGTAT+TGG | - | chr2_2:60444371-60444390 | None:intergenic | 20.0% |
| !!! | TAATAAGACTCTTTTGATTA+AGG | + | chr2_2:60444538-60444557 | Msa0261810:intron | 20.0% |
| !!! | CAATTTTAATTGCTTTTATC+AGG | + | chr2_2:60444593-60444612 | Msa0261810:intron | 20.0% |
| !! | TTGATGTTAAATCAGTTATA+AGG | + | chr2_2:60445004-60445023 | Msa0261810:CDS | 20.0% |
| !! | ATATTCTGTAAACAATTTGA+TGG | - | chr2_2:60445418-60445437 | None:intergenic | 20.0% |
| !! | ATATAAATGATTTCTAAGTC+TGG | - | chr2_2:60445682-60445701 | None:intergenic | 20.0% |
| !!! | ATCATATACTTTGTTTATCA+AGG | - | chr2_2:60445771-60445790 | None:intergenic | 20.0% |
| !! | TTGAAATTACTTATTGGAAA+GGG | - | chr2_2:60445911-60445930 | None:intergenic | 20.0% |
| ! | AAGAGAAAAAAGTCAACAAA+AGG | - | chr2_2:60443430-60443449 | None:intergenic | 25.0% |
| !! | AAGGATCTTTTAGATACATT+AGG | + | chr2_2:60443828-60443847 | Msa0261810:CDS | 25.0% |
| !! | TGAAGTATGTACAGAAATTT+TGG | - | chr2_2:60443937-60443956 | None:intergenic | 25.0% |
| ! | ATAAGTGTTAAGAGAGATAA+TGG | - | chr2_2:60444250-60444269 | None:intergenic | 25.0% |
| !! | GAAAACAACACCTATAATTT+TGG | - | chr2_2:60444302-60444321 | None:intergenic | 25.0% |
| ! | GTTGATTGTAAAATTTGTGT+TGG | + | chr2_2:60444488-60444507 | Msa0261810:intron | 25.0% |
| !! | GACAAAAAAGTACATATATC+TGG | + | chr2_2:60444847-60444866 | Msa0261810:intron | 25.0% |
| ! | ACTATTGAGTAAACTAATTC+AGG | + | chr2_2:60444948-60444967 | Msa0261810:intron | 25.0% |
| ! | CAACTTAAAATGCTCTTTAA+TGG | + | chr2_2:60445226-60445245 | Msa0261810:intron | 25.0% |
| ! | TTAAAATGCTCTTTAATGGA+TGG | + | chr2_2:60445230-60445249 | Msa0261810:intron | 25.0% |
| !!! | CATTTACTTTAGGATCAATT+AGG | - | chr2_2:60445564-60445583 | None:intergenic | 25.0% |
| ! | GAAATCATTTATATTCCAGA+AGG | + | chr2_2:60445688-60445707 | Msa0261810:CDS | 25.0% |
| ! | AAAGTATATGATTGTGATTG+TGG | + | chr2_2:60445779-60445798 | Msa0261810:exon | 25.0% |
| ! | GTTGAAATTACTTATTGGAA+AGG | - | chr2_2:60445912-60445931 | None:intergenic | 25.0% |
| ! | GAGTTGTTGAAATTACTTAT+TGG | - | chr2_2:60445917-60445936 | None:intergenic | 25.0% |
| TACATGGATTTCCAGAAATA+TGG | + | chr2_2:60443667-60443686 | Msa0261810:CDS | 30.0% | |
| TTCCAGAAATATGGTATACA+TGG | + | chr2_2:60443676-60443695 | Msa0261810:CDS | 30.0% | |
| ACCAGAAAAAGCAACTATAA+TGG | + | chr2_2:60443788-60443807 | Msa0261810:CDS | 30.0% | |
| !!! | TCCATTATAGTTGCTTTTTC+TGG | - | chr2_2:60443792-60443811 | None:intergenic | 30.0% |
| AGATACATTAGGTATCAACA+AGG | + | chr2_2:60443839-60443858 | Msa0261810:CDS | 30.0% | |
| TATGTTGGAGATACTATACT+AGG | - | chr2_2:60443900-60443919 | None:intergenic | 30.0% | |
| ACTTCAGCTTAGATATAATC+AGG | + | chr2_2:60443951-60443970 | Msa0261810:intron | 30.0% | |
| AGCACAAAACTTATGATCAA+AGG | + | chr2_2:60444112-60444131 | Msa0261810:intron | 30.0% | |
| !! | CTATAATTTTGGGAGTGATA+GGG | - | chr2_2:60444291-60444310 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTCCACTAAAAT+CGG | + | chr2_2:60444311-60444330 | Msa0261810:intron | 30.0% |
| ATGAAAGTTGAGATTTCAGA+GGG | + | chr2_2:60444335-60444354 | Msa0261810:intron | 30.0% | |
| ! | CTTATGATCTATGATAGTGT+AGG | + | chr2_2:60444424-60444443 | Msa0261810:intron | 30.0% |
| GTAAAATTTGTGTTGGAAGA+AGG | + | chr2_2:60444495-60444514 | Msa0261810:intron | 30.0% | |
| !!! | AACGTTGTCTGATAGTTTTT+TGG | + | chr2_2:60444565-60444584 | Msa0261810:intron | 30.0% |
| ! | TTTTATCAGGCTTTCCTTAT+TGG | + | chr2_2:60444606-60444625 | Msa0261810:intron | 30.0% |
| ! | TAGTAATGTAGAAGCCTTTT+GGG | - | chr2_2:60444758-60444777 | None:intergenic | 30.0% |
| GAGGAAGATATAAATGATTG+TGG | - | chr2_2:60444803-60444822 | None:intergenic | 30.0% | |
| ! | TAAGTCTAGAAAGAGTATAG+AGG | - | chr2_2:60444822-60444841 | None:intergenic | 30.0% |
| ! | GGAAAAAAAGTACGTGTATT+TGG | - | chr2_2:60444885-60444904 | None:intergenic | 30.0% |
| !! | TATACTCTTCTCTAAAACTG+AGG | + | chr2_2:60445035-60445054 | Msa0261810:CDS | 30.0% |
| AAGTGATGATCAAGAAATCA+TGG | + | chr2_2:60445068-60445087 | Msa0261810:CDS | 30.0% | |
| GCATCACTATATGAAAAATC+TGG | + | chr2_2:60445153-60445172 | Msa0261810:CDS | 30.0% | |
| CTGTAAACAATTTGATGGAA+GGG | - | chr2_2:60445413-60445432 | None:intergenic | 30.0% | |
| TCTGTAAACAATTTGATGGA+AGG | - | chr2_2:60445414-60445433 | None:intergenic | 30.0% | |
| AAAATAATTTCCATGTGTGC+TGG | + | chr2_2:60445844-60445863 | Msa0261810:intron | 30.0% | |
| AGTAATTTCAACAACTCTGT+AGG | + | chr2_2:60445920-60445939 | Msa0261810:three_prime_UTR | 30.0% | |
| ! | AAAGCAGTGGTTTTCATACA+TGG | + | chr2_2:60443651-60443670 | Msa0261810:CDS | 35.0% |
| CTCCATGTATACCATATTTC+TGG | - | chr2_2:60443681-60443700 | None:intergenic | 35.0% | |
| CATTTGCAACAGCAATCATT+TGG | - | chr2_2:60443707-60443726 | None:intergenic | 35.0% | |
| TAGAATCAAAGGCAATAGCA+CGG | - | chr2_2:60443737-60443756 | None:intergenic | 35.0% | |
| TATGGACAAAACTTACCTTC+AGG | + | chr2_2:60444030-60444049 | Msa0261810:intron | 35.0% | |
| AAAAAACGCTATGATCCTGA+AGG | - | chr2_2:60444048-60444067 | None:intergenic | 35.0% | |
| CTGACACATTTCATTAGTGT+CGG | + | chr2_2:60444147-60444166 | Msa0261810:intron | 35.0% | |
| !! | CCTATAATTTTGGGAGTGAT+AGG | - | chr2_2:60444292-60444311 | None:intergenic | 35.0% |
| CCTATCACTCCCAAAATTAT+AGG | + | chr2_2:60444289-60444308 | Msa0261810:intron | 35.0% | |
| !!! | AACTTTCATGCCGATTTTAG+TGG | - | chr2_2:60444324-60444343 | None:intergenic | 35.0% |
| CATGAAAGTTGAGATTTCAG+AGG | + | chr2_2:60444334-60444353 | Msa0261810:intron | 35.0% | |
| ! | TCATAGATCATAAGTGCTGT+AGG | - | chr2_2:60444418-60444437 | None:intergenic | 35.0% |
| TTCCTTATTGGTAAAGACTC+CGG | + | chr2_2:60444618-60444637 | Msa0261810:CDS | 35.0% | |
| !! | AGGTACAAGATTTGCTACAA+TGG | - | chr2_2:60444646-60444665 | None:intergenic | 35.0% |
| !!! | ATGAGAGATGCTACTTTTTC+TGG | - | chr2_2:60444678-60444697 | None:intergenic | 35.0% |
| GTAGCATCTCTCATAACTTT+AGG | + | chr2_2:60444684-60444703 | Msa0261810:CDS | 35.0% | |
| ! | CTAGTAATGTAGAAGCCTTT+TGG | - | chr2_2:60444759-60444778 | None:intergenic | 35.0% |
| CAAAAGGCTTCTACATTACT+AGG | + | chr2_2:60444757-60444776 | Msa0261810:CDS | 35.0% | |
| TGAGACTTTGATTACCTGTA+TGG | - | chr2_2:60445201-60445220 | None:intergenic | 35.0% | |
| ! | ACTACGTTTTTCTTTTGGCA+AGG | - | chr2_2:60445289-60445308 | None:intergenic | 35.0% |
| TGCCAAAAGAAAAACGTAGT+TGG | + | chr2_2:60445289-60445308 | Msa0261810:intron | 35.0% | |
| GCCAAAAGAAAAACGTAGTT+GGG | + | chr2_2:60445290-60445309 | Msa0261810:intron | 35.0% | |
| ! | TCCCAACTACGTTTTTCTTT+TGG | - | chr2_2:60445294-60445313 | None:intergenic | 35.0% |
| AAAAGAAAAACGTAGTTGGG+AGG | + | chr2_2:60445293-60445312 | Msa0261810:intron | 35.0% | |
| AAACTGACTAACCACCTTTA+GGG | - | chr2_2:60445327-60445346 | None:intergenic | 35.0% | |
| TAAACTGACTAACCACCTTT+AGG | - | chr2_2:60445328-60445347 | None:intergenic | 35.0% | |
| CCAACGTAAAAATGCATTTG+AGG | - | chr2_2:60445353-60445372 | None:intergenic | 35.0% | |
| ! | CCTCAAATGCATTTTTACGT+TGG | + | chr2_2:60445350-60445369 | Msa0261810:intron | 35.0% |
| ATATACACTGTCAATGTGTG+AGG | - | chr2_2:60445477-60445496 | None:intergenic | 35.0% | |
| AGTGCAGGAACATTTACTTT+AGG | - | chr2_2:60445574-60445593 | None:intergenic | 35.0% | |
| TATGATTGTGATTGTGGTTG+TGG | + | chr2_2:60445785-60445804 | Msa0261810:exon | 35.0% | |
| GTCTCATGCTTAATGTTGTA+TGG | + | chr2_2:60445821-60445840 | Msa0261810:intron | 35.0% | |
| GGTGTGTGAGGTAGTTATAA+TGG | - | chr2_2:60443457-60443476 | None:intergenic | 40.0% | |
| ATGTTCTCCATCTTTGATGC+TGG | - | chr2_2:60443484-60443503 | None:intergenic | 40.0% | |
| TCACTTCTACATGACTGTGT+TGG | - | chr2_2:60443507-60443526 | None:intergenic | 40.0% | |
| ACACAGTCATGTAGAAGTGA+AGG | + | chr2_2:60443507-60443526 | Msa0261810:CDS | 40.0% | |
| CACAGTCATGTAGAAGTGAA+GGG | + | chr2_2:60443508-60443527 | Msa0261810:CDS | 40.0% | |
| TTGTGTAGGTGAAAAAGCAG+TGG | + | chr2_2:60443638-60443657 | Msa0261810:intron | 40.0% | |
| ! | ATGATTGCTGTTGCAAATGC+TGG | + | chr2_2:60443708-60443727 | Msa0261810:CDS | 40.0% |
| GCTATTGCCTTTGATTCTAG+AGG | + | chr2_2:60443738-60443757 | Msa0261810:CDS | 40.0% | |
| !! | TCCATAGCCTCTAGAATCAA+AGG | - | chr2_2:60443748-60443767 | None:intergenic | 40.0% |
| GATCCTTGACTTCATCAACA+AGG | - | chr2_2:60443815-60443834 | None:intergenic | 40.0% | |
| ! | CTTATGATCAAAGGTGTGTC+TGG | + | chr2_2:60444121-60444140 | Msa0261810:intron | 40.0% |
| TCAGTATGTCAGTGTTTCGT+GGG | + | chr2_2:60444190-60444209 | Msa0261810:intron | 40.0% | |
| !! | AAGATTTGCTACAATGGCAC+CGG | - | chr2_2:60444640-60444659 | None:intergenic | 40.0% |
| !! | ACTTTTTCTGGATAGACAGC+AGG | - | chr2_2:60444666-60444685 | None:intergenic | 40.0% |
| AAGGCTTCTACATTACTAGG+TGG | + | chr2_2:60444760-60444779 | Msa0261810:CDS | 40.0% | |
| AGTAAACTAATTCAGGAGCC+TGG | + | chr2_2:60444955-60444974 | Msa0261810:intron | 40.0% | |
| GTAAACTAATTCAGGAGCCT+GGG | + | chr2_2:60444956-60444975 | Msa0261810:intron | 40.0% | |
| ! | TCTTGATCATCACTTGCTAC+TGG | - | chr2_2:60445063-60445082 | None:intergenic | 40.0% |
| AACTGACTAACCACCTTTAG+GGG | - | chr2_2:60445326-60445345 | None:intergenic | 40.0% | |
| ACATTGTTTATGATCCACGC+AGG | + | chr2_2:60445518-60445537 | Msa0261810:intron | 40.0% | |
| GACTACTGTTTCAACTTTCC+TGG | + | chr2_2:60445613-60445632 | Msa0261810:CDS | 40.0% | |
| TGCACAAAATGACTTCCTTC+TGG | - | chr2_2:60445706-60445725 | None:intergenic | 40.0% | |
| CTGTCTGCATCTGCACATTA+AGG | + | chr2_2:60443374-60443393 | Msa0261810:five_prime_UTR | 45.0% | |
| ACCTCATCCAGCATCAAAGA+TGG | + | chr2_2:60443474-60443493 | Msa0261810:exon | 45.0% | |
| TCCATCTTTGATGCTGGATG+AGG | - | chr2_2:60443478-60443497 | None:intergenic | 45.0% | |
| AAGCTCCATGTAGCTGAGAT+TGG | + | chr2_2:60443535-60443554 | Msa0261810:CDS | 45.0% | |
| CAGTTCCAATCTCAGCTACA+TGG | - | chr2_2:60443543-60443562 | None:intergenic | 45.0% | |
| CATGTAGCTGAGATTGGAAC+TGG | + | chr2_2:60443541-60443560 | Msa0261810:CDS | 45.0% | |
| ! | GCCTTTGATTCTAGAGGCTA+TGG | + | chr2_2:60443744-60443763 | Msa0261810:CDS | 45.0% |
| !!! | GTTGCTTTTTCTGGTTCTGC+TGG | - | chr2_2:60443783-60443802 | None:intergenic | 45.0% |
| ! | GGACCTTGTTGATGAAGTCA+AGG | + | chr2_2:60443809-60443828 | Msa0261810:CDS | 45.0% |
| ACTGACACGTCAACATGTGT+CGG | - | chr2_2:60444175-60444194 | None:intergenic | 45.0% | |
| GTCAGTATGTCAGTGTTTCG+TGG | + | chr2_2:60444189-60444208 | Msa0261810:intron | 45.0% | |
| TCGTGGGATAGAAATGCTAG+AGG | + | chr2_2:60444206-60444225 | Msa0261810:intron | 45.0% | |
| CGTGGGATAGAAATGCTAGA+GGG | + | chr2_2:60444207-60444226 | Msa0261810:intron | 45.0% | |
| GTGGGATAGAAATGCTAGAG+GGG | + | chr2_2:60444208-60444227 | Msa0261810:intron | 45.0% | |
| TGGGATAGAAATGCTAGAGG+GGG | + | chr2_2:60444209-60444228 | Msa0261810:intron | 45.0% | |
| TGGGAGTGATAGGGTTGTTT+GGG | - | chr2_2:60444282-60444301 | None:intergenic | 45.0% | |
| TTGGGAGTGATAGGGTTGTT+TGG | - | chr2_2:60444283-60444302 | None:intergenic | 45.0% | |
| GTTGGAAGAAGGTAAGTGTG+AGG | + | chr2_2:60444506-60444525 | Msa0261810:intron | 45.0% | |
| CACCGGAGTCTTTACCAATA+AGG | - | chr2_2:60444623-60444642 | None:intergenic | 45.0% | |
| GGCATTCCTTTCATGAATCC+TGG | + | chr2_2:60444705-60444724 | Msa0261810:CDS | 45.0% | |
| GAAGGACCAGGATTCATGAA+AGG | - | chr2_2:60444714-60444733 | None:intergenic | 45.0% | |
| !! | AGATGGTTCTGGATTGCAGA+AGG | - | chr2_2:60444732-60444751 | None:intergenic | 45.0% |
| !! | CTTTTGGGAGAAGATGGTTC+TGG | - | chr2_2:60444743-60444762 | None:intergenic | 45.0% |
| CAGAACCATCTTCTCCCAAA+AGG | + | chr2_2:60444741-60444760 | Msa0261810:CDS | 45.0% | |
| !! | AGAAGCCTTTTGGGAGAAGA+TGG | - | chr2_2:60444749-60444768 | None:intergenic | 45.0% |
| CTTCTACATTACTAGGTGGC+AGG | + | chr2_2:60444764-60444783 | Msa0261810:CDS | 45.0% | |
| AAGTCTTCCTCAGAGAACCA+TGG | - | chr2_2:60445123-60445142 | None:intergenic | 45.0% | |
| TGGCTTCAGATTTGCATTGC+AGG | + | chr2_2:60445173-60445192 | Msa0261810:CDS | 45.0% | |
| TTGCATTGCAGGTTCCATAC+AGG | + | chr2_2:60445184-60445203 | Msa0261810:CDS | 45.0% | |
| TGTTCCTGCACTGCTGATAA+TGG | + | chr2_2:60445582-60445601 | Msa0261810:CDS | 45.0% | |
| GTTCCTGCACTGCTGATAAT+GGG | + | chr2_2:60445583-60445602 | Msa0261810:CDS | 45.0% | |
| CTGTTTCAACTTTCCTGGCA+TGG | + | chr2_2:60445618-60445637 | Msa0261810:CDS | 45.0% | |
| ATGGAAGACTACATCCGAAG+TGG | + | chr2_2:60445637-60445656 | Msa0261810:CDS | 45.0% | |
| TGGAAGACTACATCCGAAGT+GGG | + | chr2_2:60445638-60445657 | Msa0261810:CDS | 45.0% | |
| ! | AATTTTTCACCGCCCCACTT+CGG | - | chr2_2:60445654-60445673 | None:intergenic | 45.0% |
| TGTGCATGAACAATTCCCAG+AGG | + | chr2_2:60445720-60445739 | Msa0261810:CDS | 45.0% | |
| ! | TGAGCTTGTTCACTTCCTCT+GGG | - | chr2_2:60445738-60445757 | None:intergenic | 45.0% |
| ! | ATGAGCTTGTTCACTTCCTC+TGG | - | chr2_2:60445739-60445758 | None:intergenic | 45.0% |
| GATTGTGATTGTGGTTGTGG+AGG | + | chr2_2:60445788-60445807 | Msa0261810:intron | 45.0% | |
| ! | AATTTCCATGTGTGCTGGTG+TGG | + | chr2_2:60445849-60445868 | Msa0261810:intron | 45.0% |
| !!! | AAGAATATTTTTTTATATAA+GGG | - | chr2_2:60443579-60443598 | None:intergenic | 5.0% |
| CTGACACGTCAACATGTGTC+GGG | - | chr2_2:60444174-60444193 | None:intergenic | 50.0% | |
| GGAGTGATAGGGTTGTTTGG+GGG | - | chr2_2:60444280-60444299 | None:intergenic | 50.0% | |
| GGGAGTGATAGGGTTGTTTG+GGG | - | chr2_2:60444281-60444300 | None:intergenic | 50.0% | |
| TTCTGGATTGCAGAAGGACC+AGG | - | chr2_2:60444726-60444745 | None:intergenic | 50.0% | |
| AACTAATTCAGGAGCCTGGG+AGG | + | chr2_2:60444959-60444978 | Msa0261810:intron | 50.0% | |
| ACTAATTCAGGAGCCTGGGA+GGG | + | chr2_2:60444960-60444979 | Msa0261810:intron | 50.0% | |
| CTTCCTCAGAGAACCATGGT+GGG | - | chr2_2:60445119-60445138 | None:intergenic | 50.0% | |
| TCTTCCTCAGAGAACCATGG+TGG | - | chr2_2:60445120-60445139 | None:intergenic | 50.0% | |
| AGGTCTCTCACAGTGGAAAG+TGG | + | chr2_2:60445538-60445557 | Msa0261810:intron | 50.0% | |
| TCACCCATTATCAGCAGTGC+AGG | - | chr2_2:60445589-60445608 | None:intergenic | 50.0% | |
| GGAAGACTACATCCGAAGTG+GGG | + | chr2_2:60445639-60445658 | Msa0261810:CDS | 50.0% | |
| GATGCTGGATGAGGTGTGTG+AGG | - | chr2_2:60443469-60443488 | None:intergenic | 55.0% | |
| AAATCTGCTTCTGCCCTCCC+AGG | - | chr2_2:60444976-60444995 | None:intergenic | 55.0% | |
| GGGAGGGCAGAAGCAGATTT+CGG | + | chr2_2:60444976-60444995 | Msa0261810:CDS | 55.0% | |
| ! | ATGGTGGGAGGGGAGTAGAT+GGG | - | chr2_2:60445104-60445123 | None:intergenic | 55.0% |
| ! | TCAGAGAACCATGGTGGGAG+GGG | - | chr2_2:60445114-60445133 | None:intergenic | 55.0% |
| ! | CTCAGAGAACCATGGTGGGA+GGG | - | chr2_2:60445115-60445134 | None:intergenic | 55.0% |
| AGGAGAGACTCCCCTAAAGG+TGG | + | chr2_2:60445313-60445332 | Msa0261810:intron | 55.0% | |
| CGGATGTAGTCTTCCATGCC+AGG | - | chr2_2:60445634-60445653 | None:intergenic | 55.0% | |
| AGACTACATCCGAAGTGGGG+CGG | + | chr2_2:60445642-60445661 | Msa0261810:CDS | 55.0% | |
| TCACACCACACCAGCACACA+TGG | - | chr2_2:60445857-60445876 | None:intergenic | 55.0% | |
| ! | CATGGTGGGAGGGGAGTAGA+TGG | - | chr2_2:60445105-60445124 | None:intergenic | 60.0% |
| CATCTACTCCCCTCCCACCA+TGG | + | chr2_2:60445103-60445122 | Msa0261810:CDS | 60.0% | |
| ! | CCTCAGAGAACCATGGTGGG+AGG | - | chr2_2:60445116-60445135 | None:intergenic | 60.0% |
| CCTCCCACCATGGTTCTCTG+AGG | + | chr2_2:60445113-60445132 | Msa0261810:CDS | 60.0% | |
| GGGAGGAGAGACTCCCCTAA+AGG | + | chr2_2:60445310-60445329 | Msa0261810:intron | 60.0% | |
| TCCACGCAGGTCTCTCACAG+TGG | + | chr2_2:60445531-60445550 | Msa0261810:intron | 60.0% | |
| TCCACTGTGAGAGACCTGCG+TGG | - | chr2_2:60445535-60445554 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60443367 | 60445977 | 60443367 | ID=Msa0261810;Name=Msa0261810 |
| chr2_2 | mRNA | 60443367 | 60445977 | 60443367 | ID=Msa0261810-mRNA-1;Parent=Msa0261810;Name=Msa0261810-mRNA-1;_AED=0.43;_eAED=0.43;_QI=126|1|1|1|0.8|0.66|6|117|313 |
| chr2_2 | exon | 60443367 | 60443562 | 60443367 | ID=Msa0261810-mRNA-1:exon:18597;Parent=Msa0261810-mRNA-1 |
| chr2_2 | exon | 60443646 | 60443860 | 60443646 | ID=Msa0261810-mRNA-1:exon:18598;Parent=Msa0261810-mRNA-1 |
| chr2_2 | exon | 60444615 | 60444785 | 60444615 | ID=Msa0261810-mRNA-1:exon:18599;Parent=Msa0261810-mRNA-1 |
| chr2_2 | exon | 60444970 | 60445205 | 60444970 | ID=Msa0261810-mRNA-1:exon:18600;Parent=Msa0261810-mRNA-1 |
| chr2_2 | exon | 60445540 | 60445806 | 60445540 | ID=Msa0261810-mRNA-1:exon:18601;Parent=Msa0261810-mRNA-1 |
| chr2_2 | exon | 60445878 | 60445977 | 60445878 | ID=Msa0261810-mRNA-1:exon:18602;Parent=Msa0261810-mRNA-1 |
| chr2_2 | five_prime_UTR | 60443367 | 60443492 | 60443367 | ID=Msa0261810-mRNA-1:five_prime_utr;Parent=Msa0261810-mRNA-1 |
| chr2_2 | CDS | 60443493 | 60443562 | 60443493 | ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1 |
| chr2_2 | CDS | 60443646 | 60443860 | 60443646 | ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1 |
| chr2_2 | CDS | 60444615 | 60444785 | 60444615 | ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1 |
| chr2_2 | CDS | 60444970 | 60445205 | 60444970 | ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1 |
| chr2_2 | CDS | 60445540 | 60445789 | 60445540 | ID=Msa0261810-mRNA-1:cds;Parent=Msa0261810-mRNA-1 |
| chr2_2 | three_prime_UTR | 60445790 | 60445806 | 60445790 | ID=Msa0261810-mRNA-1:three_prime_utr;Parent=Msa0261810-mRNA-1 |
| chr2_2 | three_prime_UTR | 60445878 | 60445977 | 60445878 | ID=Msa0261810-mRNA-1:three_prime_utr;Parent=Msa0261810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
