Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222250 | KEH39362.1 | 95.192 | 624 | 22 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222250 | sp|Q9SJJ3|BLH8_ARATH | 50.676 | 296 | 105 | 6 | 238 | 526 | 251 | 512 | 4.90e-81 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222250 | A0A072VC89 | 95.192 | 624 | 22 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1173 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0222250 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222250 | Msa0301580 | 0.832972 | 6.966152e-56 | -8.615850e-47 |
| Msa0222250 | Msa0338970 | 0.828184 | 1.034937e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222250 | MtrunA17_Chr2g0327021 | 95.192 | 624 | 22 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1173 |
| Msa0222250 | MtrunA17_Chr4g0028701 | 49.083 | 436 | 164 | 12 | 222 | 620 | 218 | 632 | 1.53e-116 | 362 |
| Msa0222250 | MtrunA17_Chr7g0240371 | 47.122 | 278 | 123 | 5 | 236 | 513 | 124 | 377 | 1.46e-76 | 253 |
| Msa0222250 | MtrunA17_Chr4g0008591 | 47.719 | 285 | 116 | 4 | 242 | 521 | 189 | 445 | 5.09e-75 | 251 |
| Msa0222250 | MtrunA17_Chr8g0373801 | 43.416 | 281 | 135 | 5 | 245 | 515 | 384 | 650 | 4.48e-65 | 229 |
| Msa0222250 | MtrunA17_Chr5g0403251 | 41.818 | 275 | 136 | 7 | 245 | 508 | 330 | 591 | 2.28e-60 | 214 |
| Msa0222250 | MtrunA17_Chr1g0177751 | 43.678 | 261 | 128 | 4 | 248 | 502 | 160 | 407 | 2.78e-60 | 212 |
| Msa0222250 | MtrunA17_Chr8g0387321 | 45.211 | 261 | 125 | 5 | 249 | 504 | 185 | 432 | 6.87e-60 | 211 |
| Msa0222250 | MtrunA17_Chr7g0267481 | 47.345 | 226 | 98 | 4 | 303 | 525 | 232 | 439 | 2.82e-59 | 210 |
| Msa0222250 | MtrunA17_Chr4g0025521 | 41.456 | 316 | 153 | 8 | 249 | 555 | 217 | 509 | 8.55e-59 | 209 |
| Msa0222250 | MtrunA17_Chr1g0155681 | 43.310 | 284 | 124 | 7 | 253 | 522 | 174 | 434 | 1.17e-58 | 207 |
| Msa0222250 | MtrunA17_Chr3g0141941 | 40.278 | 288 | 139 | 5 | 245 | 521 | 158 | 423 | 1.81e-58 | 204 |
| Msa0222250 | MtrunA17_Chr3g0141931 | 39.216 | 306 | 142 | 9 | 231 | 523 | 154 | 428 | 2.23e-55 | 194 |
| Msa0222250 | MtrunA17_Chr1g0151681 | 35.577 | 208 | 114 | 4 | 313 | 519 | 315 | 503 | 3.63e-34 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222250 | AT2G27990.1 | 50.676 | 296 | 105 | 6 | 238 | 526 | 251 | 512 | 4.98e-82 | 270 |
| Msa0222250 | AT5G02030.1 | 47.262 | 347 | 137 | 11 | 185 | 511 | 98 | 418 | 2.62e-73 | 246 |
| Msa0222250 | AT4G34610.2 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0222250 | AT4G34610.4 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0222250 | AT4G34610.3 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0222250 | AT4G34610.1 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0222250 | AT1G75410.1 | 39.306 | 346 | 192 | 6 | 168 | 508 | 81 | 413 | 1.59e-65 | 224 |
| Msa0222250 | AT1G75410.2 | 39.306 | 346 | 192 | 6 | 168 | 508 | 81 | 413 | 1.59e-65 | 224 |
| Msa0222250 | AT4G36870.2 | 46.067 | 267 | 124 | 6 | 249 | 508 | 312 | 565 | 3.80e-65 | 228 |
| Msa0222250 | AT4G36870.1 | 46.067 | 267 | 124 | 6 | 249 | 508 | 312 | 565 | 3.80e-65 | 228 |
| Msa0222250 | AT2G23760.2 | 43.911 | 271 | 133 | 5 | 245 | 508 | 233 | 491 | 4.08e-62 | 217 |
| Msa0222250 | AT2G23760.1 | 43.911 | 271 | 133 | 5 | 245 | 508 | 233 | 491 | 4.08e-62 | 217 |
| Msa0222250 | AT2G23760.3 | 43.911 | 271 | 133 | 5 | 245 | 508 | 233 | 491 | 4.08e-62 | 217 |
| Msa0222250 | AT2G16400.1 | 40.625 | 288 | 146 | 7 | 244 | 530 | 109 | 372 | 4.03e-61 | 211 |
| Msa0222250 | AT1G19700.1 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 4.52e-61 | 213 |
| Msa0222250 | AT1G19700.3 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 4.52e-61 | 213 |
| Msa0222250 | AT1G19700.5 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 4.52e-61 | 213 |
| Msa0222250 | AT1G19700.4 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 4.52e-61 | 213 |
| Msa0222250 | AT1G19700.2 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 4.52e-61 | 213 |
| Msa0222250 | AT2G35940.3 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.61e-59 | 211 |
| Msa0222250 | AT2G35940.1 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.61e-59 | 211 |
| Msa0222250 | AT2G35940.2 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.61e-59 | 211 |
| Msa0222250 | AT2G27220.1 | 37.618 | 319 | 146 | 7 | 220 | 538 | 56 | 321 | 7.74e-53 | 187 |
| Msa0222250 | AT2G27220.3 | 37.618 | 319 | 146 | 7 | 220 | 538 | 56 | 321 | 7.74e-53 | 187 |
| Msa0222250 | AT2G23760.4 | 36.842 | 323 | 133 | 6 | 245 | 508 | 233 | 543 | 1.58e-52 | 192 |
| Msa0222250 | AT5G41410.1 | 38.971 | 272 | 146 | 4 | 250 | 508 | 194 | 458 | 2.34e-52 | 190 |
| Msa0222250 | AT4G36870.4 | 43.145 | 248 | 121 | 6 | 249 | 489 | 312 | 546 | 4.53e-52 | 188 |
| Msa0222250 | AT1G75410.3 | 37.117 | 326 | 187 | 6 | 168 | 488 | 81 | 393 | 1.06e-51 | 183 |
| Msa0222250 | AT4G36870.3 | 42.683 | 246 | 121 | 6 | 249 | 487 | 312 | 544 | 1.06e-50 | 184 |
| Msa0222250 | AT2G27990.2 | 46.154 | 234 | 88 | 5 | 238 | 467 | 251 | 450 | 1.95e-50 | 181 |
| Msa0222250 | AT1G75430.1 | 46.354 | 192 | 85 | 4 | 322 | 508 | 91 | 269 | 7.66e-50 | 175 |
| Msa0222250 | AT2G27220.2 | 35.905 | 337 | 145 | 8 | 220 | 538 | 56 | 339 | 4.00e-49 | 177 |
| Msa0222250 | AT4G32980.1 | 31.206 | 282 | 169 | 6 | 245 | 524 | 197 | 455 | 9.78e-38 | 146 |
| Msa0222250 | AT4G32980.2 | 31.206 | 282 | 169 | 6 | 245 | 524 | 197 | 455 | 9.78e-38 | 146 |
| Msa0222250 | AT1G75430.2 | 38.816 | 152 | 75 | 4 | 321 | 467 | 90 | 228 | 1.03e-24 | 105 |
Find 121 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATGTTGTCACCAATTT+TGG | 0.122717 | 2_1:+71279430 | None:intergenic |
| CATTCAGAACTGAGTGATTT+TGG | 0.129421 | 2_1:-71280033 | Msa0222250:CDS |
| TAAGAGTTCAAGATTCTTAA+AGG | 0.151069 | 2_1:-71279485 | Msa0222250:CDS |
| TGTAATGTGGTCTTGACTTT+TGG | 0.196349 | 2_1:-71276821 | Msa0222250:three_prime_UTR |
| TGACTTTGTAGGATGATTAT+TGG | 0.203952 | 2_1:-71276853 | Msa0222250:three_prime_UTR |
| AATTCTCTTTCTTATGTATA+TGG | 0.222196 | 2_1:-71279940 | Msa0222250:CDS |
| TAGAGAGAAGAGGTATAAAT+TGG | 0.239051 | 2_1:-71277029 | Msa0222250:CDS |
| AATGATAAGCTTTGTGGTTT+TGG | 0.247497 | 2_1:+71279754 | None:intergenic |
| CTAGCAGGACTCTTTGAATT+AGG | 0.255997 | 2_1:+71279565 | None:intergenic |
| CTTAGACATCTTGACTTTGT+AGG | 0.257836 | 2_1:-71276864 | Msa0222250:three_prime_UTR |
| TTCGCAGGACTTCACTTATA+TGG | 0.258775 | 2_1:+71278122 | None:intergenic |
| TTCAATGCCTTATCCATTCT+AGG | 0.259330 | 2_1:+71277163 | None:intergenic |
| ATAGTAGCATAACCAGTAAA+AGG | 0.261980 | 2_1:+71279511 | None:intergenic |
| GCTTTATTCTGCTGATAATC+TGG | 0.263343 | 2_1:+71279295 | None:intergenic |
| CCTTTGGAGTATCAAGAATT+AGG | 0.272397 | 2_1:-71280123 | Msa0222250:CDS |
| CATTATCATCAGCAACATTA+TGG | 0.277940 | 2_1:-71280066 | Msa0222250:CDS |
| GTTGCACAAAATTTGTTAGA+TGG | 0.282371 | 2_1:-71279463 | Msa0222250:CDS |
| GTCAACTAGTTTAGTACTAT+TGG | 0.285954 | 2_1:+71278075 | None:intergenic |
| GTGCCATAAGTTCTCTCATT+TGG | 0.291427 | 2_1:+71277208 | None:intergenic |
| GATTTGAAATAGCATTATTC+AGG | 0.305780 | 2_1:+71278152 | None:intergenic |
| GATTAATGCAGGTATCAAAT+TGG | 0.308082 | 2_1:-71277324 | Msa0222250:intron |
| TAGTACTAGTTATGGAAATC+TGG | 0.321419 | 2_1:-71279545 | Msa0222250:CDS |
| AAGAATGGATGGAACACTTA+TGG | 0.325450 | 2_1:-71276990 | Msa0222250:CDS |
| CATTTCTGACTCTGACCTAT+TGG | 0.330237 | 2_1:+71279843 | None:intergenic |
| AAACCATTTGCATCTGTTGA+TGG | 0.333209 | 2_1:+71278263 | None:intergenic |
| AGTAGCCAACACATGTTTAT+CGG | 0.338043 | 2_1:+71277740 | None:intergenic |
| TATGGTGCTGAAAAGCAATT+AGG | 0.340053 | 2_1:-71279922 | Msa0222250:CDS |
| ATCCACAACAACAGCATGTT+TGG | 0.346556 | 2_1:-71277970 | Msa0222250:CDS |
| AATGTTTCCTAGTGCTGATT+GGG | 0.352550 | 2_1:-71279350 | Msa0222250:CDS |
| GGCTTTGATCCATGCATCTT+AGG | 0.352803 | 2_1:+71278035 | None:intergenic |
| TCATGTCCACTATGTCTATA+TGG | 0.356435 | 2_1:+71276959 | None:intergenic |
| TACTGCTACTTCAAATCCTT+TGG | 0.357101 | 2_1:-71280139 | Msa0222250:CDS |
| CAATGTTTCCTAGTGCTGAT+TGG | 0.357408 | 2_1:-71279351 | Msa0222250:CDS |
| ATTTCTGTTGATGAATAAAC+TGG | 0.361530 | 2_1:+71280177 | None:intergenic |
| ATCAACTCACTGATCAATAT+TGG | 0.368498 | 2_1:-71279981 | Msa0222250:CDS |
| AGAATCGCCACTGCACGTTC+TGG | 0.377371 | 2_1:+71277929 | None:intergenic |
| GAATCAGAATAATTCTTTGC+AGG | 0.380802 | 2_1:-71279887 | Msa0222250:CDS |
| CATGTGTTGGCTACTCAAAC+TGG | 0.395238 | 2_1:-71277732 | Msa0222250:CDS |
| AGTCCAAATGAGAGAACTTA+TGG | 0.398547 | 2_1:-71277211 | Msa0222250:CDS |
| ATTTGGACTGCAATTCTCAT+TGG | 0.400633 | 2_1:+71277225 | None:intergenic |
| TTTCATTGACATTGGAACTT+AGG | 0.407702 | 2_1:-71276908 | Msa0222250:exon |
| AGTCCTGCTAGTACTAGTTA+TGG | 0.414886 | 2_1:-71279553 | Msa0222250:CDS |
| CAAATTCAATGTATGGAACT+TGG | 0.416249 | 2_1:-71277109 | Msa0222250:CDS |
| TCCACAATCTCTAGAAATGA+TGG | 0.429326 | 2_1:+71279624 | None:intergenic |
| TGTTGCATCATTAACCTACT+TGG | 0.429908 | 2_1:+71280087 | None:intergenic |
| TGAAAATCAAATTCAATGTA+TGG | 0.431807 | 2_1:-71277116 | Msa0222250:CDS |
| TTGCACAAAATTTGTTAGAT+GGG | 0.442823 | 2_1:-71279462 | Msa0222250:CDS |
| ACAAAAGAATAGACCTGAAA+AGG | 0.450106 | 2_1:-71278011 | Msa0222250:CDS |
| CATGATGTTGTGAGATCACT+TGG | 0.453466 | 2_1:-71276941 | Msa0222250:CDS |
| GAAACTGAGGTTGCTTCTAA+AGG | 0.458889 | 2_1:-71279400 | Msa0222250:CDS |
| TCCATCATTTCTAGAGATTG+TGG | 0.465297 | 2_1:-71279625 | Msa0222250:CDS |
| AGCTACTCCTTACATCAGTC+TGG | 0.473021 | 2_1:-71278206 | Msa0222250:CDS |
| TCATCCTTTGAATCAGTAGC+AGG | 0.475962 | 2_1:-71278238 | Msa0222250:CDS |
| ATGCCTTATCCATTCTAGGC+TGG | 0.476270 | 2_1:+71277167 | None:intergenic |
| AAACTGAGGTTGCTTCTAAA+GGG | 0.476654 | 2_1:-71279399 | Msa0222250:CDS |
| TGGATCTGTTTCATTGACAT+TGG | 0.478654 | 2_1:-71276916 | Msa0222250:exon |
| CAGCCAGCCTAGAATGGATA+AGG | 0.478775 | 2_1:-71277170 | Msa0222250:CDS |
| GAGAACTTATGGCACTGAAG+TGG | 0.480355 | 2_1:-71277200 | Msa0222250:CDS |
| AGACCTGAAAAGGTTCCATC+AGG | 0.481595 | 2_1:-71278001 | Msa0222250:CDS |
| GTAGCTTAGGTGTTTCTTTG+CGG | 0.484731 | 2_1:-71279318 | Msa0222250:CDS |
| CAATAGGTCAGAGTCAGAAA+TGG | 0.486499 | 2_1:-71279842 | Msa0222250:CDS |
| AGTGATAATGATAAGCTTTG+TGG | 0.494435 | 2_1:+71279748 | None:intergenic |
| TTCATGCAGCCAGCCTAGAA+TGG | 0.494640 | 2_1:-71277176 | Msa0222250:CDS |
| TCAAGTCTATCACTTCCAAT+AGG | 0.496873 | 2_1:-71279858 | Msa0222250:CDS |
| AACTGGTCTTTCGCGAAACC+AGG | 0.498308 | 2_1:-71277715 | Msa0222250:intron |
| TAGTTTAGTACTATTGGTTG+TGG | 0.502195 | 2_1:+71278081 | None:intergenic |
| CATGTTTATCGGTGTCTGTA+GGG | 0.506317 | 2_1:+71277751 | None:intergenic |
| GTAAATGAGTTAAATGAGGC+AGG | 0.508118 | 2_1:-71277061 | Msa0222250:CDS |
| AATAGTCAAGGAATTTGTGT+TGG | 0.508836 | 2_1:-71279802 | Msa0222250:CDS |
| TAGTAGCATAACCAGTAAAA+GGG | 0.510354 | 2_1:+71279512 | None:intergenic |
| AGTTCGCGTGTGGAAGCCTA+TGG | 0.514217 | 2_1:-71277287 | Msa0222250:CDS |
| GAACTTAGGCATGGTGTTGA+AGG | 0.518287 | 2_1:-71276894 | Msa0222250:three_prime_UTR |
| TTAGTACTATTGGTTGTGGT+CGG | 0.518791 | 2_1:+71278085 | None:intergenic |
| AAAGTCAAGACCACATTACA+AGG | 0.522541 | 2_1:+71276824 | None:intergenic |
| AGTACTAGTTATGGAAATCT+GGG | 0.524187 | 2_1:-71279544 | Msa0222250:CDS |
| TTATTCCAACCACCAAGTCT+TGG | 0.528388 | 2_1:+71279590 | None:intergenic |
| CAGTGGCGATTCTAAGAGCT+TGG | 0.530709 | 2_1:-71277919 | Msa0222250:CDS |
| ACATGTTTATCGGTGTCTGT+AGG | 0.537212 | 2_1:+71277750 | None:intergenic |
| ATGTGTACTTCTTCAACCAT+AGG | 0.539006 | 2_1:+71277271 | None:intergenic |
| AGAACTTATGGCACTGAAGT+GGG | 0.539197 | 2_1:-71277199 | Msa0222250:CDS |
| TGTTGTGAGATCACTTGGAT+TGG | 0.539982 | 2_1:-71276936 | Msa0222250:CDS |
| ATCATCACACCAAGACTTGG+TGG | 0.541486 | 2_1:-71279599 | Msa0222250:CDS |
| ATGTGGAATGAGTTCAAGAA+TGG | 0.547007 | 2_1:-71277005 | Msa0222250:CDS |
| AAGACCTGCTACTGATTCAA+AGG | 0.547681 | 2_1:+71278234 | None:intergenic |
| GCTTATGTTCATGCAAGAAG+AGG | 0.548768 | 2_1:-71279269 | Msa0222250:intron |
| TTCAAAGCCAGACTGATGTA+AGG | 0.549663 | 2_1:+71278199 | None:intergenic |
| TATGGAAATCTGGGTCCACT+TGG | 0.554507 | 2_1:-71279535 | Msa0222250:CDS |
| GTATTGACAAATCATTTCGC+AGG | 0.555399 | 2_1:+71278107 | None:intergenic |
| AAATCACTCAGTTCTGAATG+AGG | 0.555669 | 2_1:+71280036 | None:intergenic |
| CACAACAACAGCATGTTTGG+AGG | 0.557669 | 2_1:-71277967 | Msa0222250:CDS |
| AAAATCATCACACCAAGACT+TGG | 0.561583 | 2_1:-71279602 | Msa0222250:CDS |
| GTACCATCAACAGATGCAAA+TGG | 0.563901 | 2_1:-71278266 | Msa0222250:CDS |
| AAGAGGTATAAATTGGAATG+TGG | 0.564061 | 2_1:-71277022 | Msa0222250:CDS |
| TCACACCAAGACTTGGTGGT+TGG | 0.564779 | 2_1:-71279595 | Msa0222250:CDS |
| TTTCCATAACTAGTACTAGC+AGG | 0.567280 | 2_1:+71279550 | None:intergenic |
| CCTAATTCTTGATACTCCAA+AGG | 0.577755 | 2_1:+71280123 | None:intergenic |
| CTCCAAACATGCTGTTGTTG+TGG | 0.578756 | 2_1:+71277968 | None:intergenic |
| GTGCAGCTTCAGAACCAAGT+AGG | 0.580096 | 2_1:-71280101 | Msa0222250:CDS |
| TCAGTGAGTTGATGTGGAGC+AGG | 0.585114 | 2_1:+71279991 | None:intergenic |
| ATGTTTCCTAGTGCTGATTG+GGG | 0.585973 | 2_1:-71279349 | Msa0222250:CDS |
| AGACACCGATAAACATGTGT+TGG | 0.590173 | 2_1:-71277745 | Msa0222250:CDS |
| AGTTAAATGAGGCAGGACAA+TGG | 0.596972 | 2_1:-71277054 | Msa0222250:CDS |
| TGTGGCAAGCCTAAGATGCA+TGG | 0.598137 | 2_1:-71278044 | Msa0222250:CDS |
| AGAAGTAAATGAGTTAAATG+AGG | 0.599304 | 2_1:-71277065 | Msa0222250:CDS |
| TTGACATTGGAACTTAGGCA+TGG | 0.600463 | 2_1:-71276903 | Msa0222250:exon |
| CTTATGCATCATAATAGTCA+AGG | 0.601239 | 2_1:-71279814 | Msa0222250:CDS |
| TTAATGCTCGAGTTCGCGTG+TGG | 0.602257 | 2_1:-71277297 | Msa0222250:CDS |
| GGAATGAGTTCAAGAATGGA+TGG | 0.604592 | 2_1:-71277001 | Msa0222250:CDS |
| TAATAATATTACACAAAACA+AGG | 0.606372 | 2_1:-71279719 | Msa0222250:CDS |
| ACTAGTTGACACTAATAATG+TGG | 0.612366 | 2_1:-71278062 | Msa0222250:CDS |
| TATTGATCAGTGAGTTGATG+TGG | 0.613925 | 2_1:+71279985 | None:intergenic |
| GACAATGGAGTAGAGAGAAG+AGG | 0.622784 | 2_1:-71277039 | Msa0222250:CDS |
| ATGTGATGTTTCTGAAACTG+AGG | 0.624579 | 2_1:-71279413 | Msa0222250:CDS |
| TGTGGATCATGAAAACCTGA+TGG | 0.624654 | 2_1:+71277986 | None:intergenic |
| CAATCTCTAGAAATGATGGA+AGG | 0.631862 | 2_1:+71279628 | None:intergenic |
| TTGGCATGTACCTTGTAATG+TGG | 0.647194 | 2_1:-71276834 | Msa0222250:three_prime_UTR |
| AGGCTTTCCAGAACGTGCAG+TGG | 0.656796 | 2_1:-71277936 | Msa0222250:CDS |
| CGTTCTGGAAAGCCTCTCTG+AGG | 0.663932 | 2_1:+71277944 | None:intergenic |
| TAACCAGTAAAAGGGCCAAG+TGG | 0.664374 | 2_1:+71279520 | None:intergenic |
| TGTTTCCTAGTGCTGATTGG+GGG | 0.672245 | 2_1:-71279348 | Msa0222250:CDS |
| CATGTTTGGAGGCCTCAGAG+AGG | 0.725435 | 2_1:-71277956 | Msa0222250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAAACAAAAATTTAAA+AGG | + | chr2_1:71279558-71279577 | None:intergenic | 10.0% |
| !! | TAAATAATTAAGTGTATTAT+AGG | + | chr2_1:71279645-71279664 | None:intergenic | 10.0% |
| !! | TAATAATATTACACAAAACA+AGG | - | chr2_1:71277322-71277341 | Msa0222250:intron | 15.0% |
| !! | AATTGCAAAGATAAATAAAT+TGG | - | chr2_1:71277978-71277997 | Msa0222250:CDS | 15.0% |
| !! | TATCTCTACAAATAATTATA+TGG | - | chr2_1:71278251-71278270 | Msa0222250:CDS | 15.0% |
| !! | AATATAAAAAATTTGTACCA+TGG | - | chr2_1:71278404-71278423 | Msa0222250:intron | 15.0% |
| !!! | ATGATAGTTATCATTTTTTT+TGG | - | chr2_1:71278677-71278696 | Msa0222250:intron | 15.0% |
| !!! | TTTTTTTTTTTTTATGGATC+TGG | + | chr2_1:71279510-71279529 | None:intergenic | 15.0% |
| !! | AAATTTAAAAGGAATGAAAT+TGG | + | chr2_1:71279547-71279566 | None:intergenic | 15.0% |
| !! | AATTCTCTTTCTTATGTATA+TGG | - | chr2_1:71277101-71277120 | Msa0222250:CDS | 20.0% |
| !!! | ATTTTTCTTCATATCACAAT+TGG | - | chr2_1:71278197-71278216 | Msa0222250:CDS | 20.0% |
| !! | ATAAAATTTGTATACTCTGT+TGG | - | chr2_1:71278296-71278315 | Msa0222250:intron | 20.0% |
| !!! | TAAAGTCAAAGTCATTTTAT+TGG | - | chr2_1:71278616-71278635 | Msa0222250:intron | 20.0% |
| !! | CTCAAGAATCAAATAAAATT+AGG | + | chr2_1:71278648-71278667 | None:intergenic | 20.0% |
| !!! | TTTCTATGTGTTATTTGTTA+AGG | - | chr2_1:71279214-71279233 | Msa0222250:intron | 20.0% |
| !!! | TCAATAGATTTTGTTACTTT+TGG | - | chr2_1:71279600-71279619 | Msa0222250:CDS | 20.0% |
| !! | TTAAGTGTATTATAGGAAAA+CGG | + | chr2_1:71279638-71279657 | None:intergenic | 20.0% |
| !! | TTAATTCATCAGATAAACAT+AGG | + | chr2_1:71279680-71279699 | None:intergenic | 20.0% |
| !! | ATGTTTATCTGATGAATTAA+TGG | - | chr2_1:71279680-71279699 | Msa0222250:CDS | 20.0% |
| !!! | ATACATTGAATTTGATTTTC+AGG | + | chr2_1:71279926-71279945 | None:intergenic | 20.0% |
| !! | TGAAAATCAAATTCAATGTA+TGG | - | chr2_1:71279925-71279944 | Msa0222250:CDS | 20.0% |
| !! | ATTTCTGTTGATGAATAAAC+TGG | + | chr2_1:71276867-71276886 | None:intergenic | 25.0% |
| !! | CTTATGTTTCTCATTTTGAA+GGG | - | chr2_1:71277345-71277364 | Msa0222250:intron | 25.0% |
| !!! | TTATGTTTCTCATTTTGAAG+GGG | - | chr2_1:71277346-71277365 | Msa0222250:intron | 25.0% |
| ! | TAAGAGTTCAAGATTCTTAA+AGG | - | chr2_1:71277556-71277575 | Msa0222250:intron | 25.0% |
| !!! | TTGCACAAAATTTGTTAGAT+GGG | - | chr2_1:71277579-71277598 | Msa0222250:intron | 25.0% |
| !! | TACAGTAACTTGTAAGTAAA+AGG | - | chr2_1:71277890-71277909 | Msa0222250:intron | 25.0% |
| !!! | GCAAGTTTTAATTTCTGAAA+AGG | - | chr2_1:71277952-71277971 | Msa0222250:CDS | 25.0% |
| !! | ATGATCTGTTAGATCATTTT+GGG | + | chr2_1:71278509-71278528 | None:intergenic | 25.0% |
| !! | TATGATCTGTTAGATCATTT+TGG | + | chr2_1:71278510-71278529 | None:intergenic | 25.0% |
| !!! | CTCTTATTTGTTTTGAAACT+TGG | - | chr2_1:71278575-71278594 | Msa0222250:intron | 25.0% |
| !! | GATTTGAAATAGCATTATTC+AGG | + | chr2_1:71278892-71278911 | None:intergenic | 25.0% |
| ! | GAATTGTATATTGAGACATT+TGG | - | chr2_1:71279403-71279422 | Msa0222250:CDS | 25.0% |
| !! | AAAGTATTTGACCATTGTTA+TGG | + | chr2_1:71279453-71279472 | None:intergenic | 25.0% |
| !!! | TATTGATTTTCTTAGTATGC+AGG | + | chr2_1:71279586-71279605 | None:intergenic | 25.0% |
| ! | AATTTGATACCTGCATTAAT+CGG | + | chr2_1:71279718-71279737 | None:intergenic | 25.0% |
| ! | AGAAGTAAATGAGTTAAATG+AGG | - | chr2_1:71279976-71279995 | Msa0222250:CDS | 25.0% |
| CATTATCATCAGCAACATTA+TGG | - | chr2_1:71276975-71276994 | Msa0222250:CDS | 30.0% | |
| !! | AACTGAGTGATTTTGGAAAT+TGG | - | chr2_1:71277015-71277034 | Msa0222250:CDS | 30.0% |
| ATCAACTCACTGATCAATAT+TGG | - | chr2_1:71277060-71277079 | Msa0222250:CDS | 30.0% | |
| GAATCAGAATAATTCTTTGC+AGG | - | chr2_1:71277154-71277173 | Msa0222250:CDS | 30.0% | |
| CTTATGCATCATAATAGTCA+AGG | - | chr2_1:71277227-71277246 | Msa0222250:CDS | 30.0% | |
| AATAGTCAAGGAATTTGTGT+TGG | - | chr2_1:71277239-71277258 | Msa0222250:CDS | 30.0% | |
| !! | AATGATAAGCTTTGTGGTTT+TGG | + | chr2_1:71277290-71277309 | None:intergenic | 30.0% |
| ! | AGTGATAATGATAAGCTTTG+TGG | + | chr2_1:71277296-71277315 | None:intergenic | 30.0% |
| ! | GCTTATGTTTCTCATTTTGA+AGG | - | chr2_1:71277344-71277363 | Msa0222250:intron | 30.0% |
| !! | TATGTTTCTCATTTTGAAGG+GGG | - | chr2_1:71277347-71277366 | Msa0222250:intron | 30.0% |
| TAGTACTAGTTATGGAAATC+TGG | - | chr2_1:71277496-71277515 | Msa0222250:intron | 30.0% | |
| AGTACTAGTTATGGAAATCT+GGG | - | chr2_1:71277497-71277516 | Msa0222250:intron | 30.0% | |
| TAGTAGCATAACCAGTAAAA+GGG | + | chr2_1:71277532-71277551 | None:intergenic | 30.0% | |
| ATAGTAGCATAACCAGTAAA+AGG | + | chr2_1:71277533-71277552 | None:intergenic | 30.0% | |
| !! | GTTGCACAAAATTTGTTAGA+TGG | - | chr2_1:71277578-71277597 | Msa0222250:intron | 30.0% |
| AATTGTCTCAAGTATATGCA+AGG | + | chr2_1:71278054-71278073 | None:intergenic | 30.0% | |
| TCTATACTGAAAATCCAAGA+TGG | - | chr2_1:71278475-71278494 | Msa0222250:intron | 30.0% | |
| GTTATCAGCATCACTTTAAT+AGG | - | chr2_1:71278542-71278561 | Msa0222250:intron | 30.0% | |
| GGTTAATTGTCTTCAAAGAT+TGG | - | chr2_1:71278698-71278717 | Msa0222250:intron | 30.0% | |
| TTAACCTATTACACATATCC+CGG | + | chr2_1:71278740-71278759 | None:intergenic | 30.0% | |
| ! | TAGTTTAGTACTATTGGTTG+TGG | + | chr2_1:71278963-71278982 | None:intergenic | 30.0% |
| ! | GTCAACTAGTTTAGTACTAT+TGG | + | chr2_1:71278969-71278988 | None:intergenic | 30.0% |
| ACTAGTTGACACTAATAATG+TGG | - | chr2_1:71278979-71278998 | Msa0222250:intron | 30.0% | |
| !! | TTTCAGGTCTATTCTTTTGT+AGG | + | chr2_1:71279030-71279049 | None:intergenic | 30.0% |
| ACAAAAGAATAGACCTGAAA+AGG | - | chr2_1:71279030-71279049 | Msa0222250:intron | 30.0% | |
| TTAAGTGAATTCAAAGGAGT+AGG | + | chr2_1:71279358-71279377 | None:intergenic | 30.0% | |
| TCCTTTGAATTCACTTAAGT+TGG | - | chr2_1:71279360-71279379 | Msa0222250:CDS | 30.0% | |
| !!! | GGCTTTTTGATTTGTTTGAT+TGG | - | chr2_1:71279381-71279400 | Msa0222250:CDS | 30.0% |
| ! | TCTTAAGTTGTCCATAACAA+TGG | - | chr2_1:71279439-71279458 | Msa0222250:CDS | 30.0% |
| !!! | CCAACAGTGGAAATTTTTTA+GGG | + | chr2_1:71279487-71279506 | None:intergenic | 30.0% |
| AAACTATATCCGATTAATGC+AGG | - | chr2_1:71279706-71279725 | Msa0222250:CDS | 30.0% | |
| GATTAATGCAGGTATCAAAT+TGG | - | chr2_1:71279717-71279736 | Msa0222250:CDS | 30.0% | |
| CAAATTCAATGTATGGAACT+TGG | - | chr2_1:71279932-71279951 | Msa0222250:CDS | 30.0% | |
| ! | TAGAGAGAAGAGGTATAAAT+TGG | - | chr2_1:71280012-71280031 | Msa0222250:CDS | 30.0% |
| ! | AAGAGGTATAAATTGGAATG+TGG | - | chr2_1:71280019-71280038 | Msa0222250:CDS | 30.0% |
| ! | TTTTTGCCATATAGACATAG+TGG | - | chr2_1:71280076-71280095 | Msa0222250:CDS | 30.0% |
| TTTCATTGACATTGGAACTT+AGG | - | chr2_1:71280133-71280152 | Msa0222250:CDS | 30.0% | |
| TGACTTTGTAGGATGATTAT+TGG | - | chr2_1:71280188-71280207 | Msa0222250:CDS | 30.0% | |
| ! | TACTGCTACTTCAAATCCTT+TGG | - | chr2_1:71276902-71276921 | Msa0222250:three_prime_UTR | 35.0% |
| CCTAATTCTTGATACTCCAA+AGG | + | chr2_1:71276921-71276940 | None:intergenic | 35.0% | |
| !! | CCTTTGGAGTATCAAGAATT+AGG | - | chr2_1:71276918-71276937 | Msa0222250:exon | 35.0% |
| TGTTGCATCATTAACCTACT+TGG | + | chr2_1:71276957-71276976 | None:intergenic | 35.0% | |
| !! | AAATCACTCAGTTCTGAATG+AGG | + | chr2_1:71277008-71277027 | None:intergenic | 35.0% |
| ! | CATTCAGAACTGAGTGATTT+TGG | - | chr2_1:71277008-71277027 | Msa0222250:CDS | 35.0% |
| !! | TATTGATCAGTGAGTTGATG+TGG | + | chr2_1:71277059-71277078 | None:intergenic | 35.0% |
| ! | TATGGTGCTGAAAAGCAATT+AGG | - | chr2_1:71277119-71277138 | Msa0222250:CDS | 35.0% |
| TCAAGTCTATCACTTCCAAT+AGG | - | chr2_1:71277183-71277202 | Msa0222250:CDS | 35.0% | |
| ! | CAATCTCTAGAAATGATGGA+AGG | + | chr2_1:71277416-71277435 | None:intergenic | 35.0% |
| ! | TCCATCATTTCTAGAGATTG+TGG | - | chr2_1:71277416-71277435 | Msa0222250:intron | 35.0% |
| ! | TCCACAATCTCTAGAAATGA+TGG | + | chr2_1:71277420-71277439 | None:intergenic | 35.0% |
| AAAATCATCACACCAAGACT+TGG | - | chr2_1:71277439-71277458 | Msa0222250:intron | 35.0% | |
| TTTCCATAACTAGTACTAGC+AGG | + | chr2_1:71277494-71277513 | None:intergenic | 35.0% | |
| ! | TCACATGTTGTCACCAATTT+TGG | + | chr2_1:71277614-71277633 | None:intergenic | 35.0% |
| !! | ATGTGATGTTTCTGAAACTG+AGG | - | chr2_1:71277628-71277647 | Msa0222250:intron | 35.0% |
| AAACTGAGGTTGCTTCTAAA+GGG | - | chr2_1:71277642-71277661 | Msa0222250:intron | 35.0% | |
| !! | AATGTTTCCTAGTGCTGATT+GGG | - | chr2_1:71277691-71277710 | Msa0222250:intron | 35.0% |
| ! | GCTTTATTCTGCTGATAATC+TGG | + | chr2_1:71277749-71277768 | None:intergenic | 35.0% |
| CACAACAGCATAAAGTCATT+TGG | + | chr2_1:71277916-71277935 | None:intergenic | 35.0% | |
| AATGACTTTATGCTGTTGTG+TGG | - | chr2_1:71277916-71277935 | Msa0222250:CDS | 35.0% | |
| GAAAATGTATGTCACCTAGA+TGG | + | chr2_1:71278174-71278193 | None:intergenic | 35.0% | |
| ! | CTGTTTTCGTCAACAGTTTA+AGG | - | chr2_1:71278373-71278392 | Msa0222250:intron | 35.0% |
| ! | TTTGATAACACCACAGCAAT+TGG | - | chr2_1:71278451-71278470 | Msa0222250:intron | 35.0% |
| ! | TTGATAACACCACAGCAATT+GGG | - | chr2_1:71278452-71278471 | Msa0222250:intron | 35.0% |
| AAACCATTTGCATCTGTTGA+TGG | + | chr2_1:71278781-71278800 | None:intergenic | 35.0% | |
| ! | GTATTGACAAATCATTTCGC+AGG | + | chr2_1:71278937-71278956 | None:intergenic | 35.0% |
| ! | TTAGTACTATTGGTTGTGGT+CGG | + | chr2_1:71278959-71278978 | None:intergenic | 35.0% |
| AGTAGCCAACACATGTTTAT+CGG | + | chr2_1:71279304-71279323 | None:intergenic | 35.0% | |
| GCCAACTTAAGTGAATTCAA+AGG | + | chr2_1:71279364-71279383 | None:intergenic | 35.0% | |
| CCCTAAAAAATTTCCACTGT+TGG | - | chr2_1:71279484-71279503 | Msa0222250:CDS | 35.0% | |
| !!! | GCCAACAGTGGAAATTTTTT+AGG | + | chr2_1:71279488-71279507 | None:intergenic | 35.0% |
| ATGTGTACTTCTTCAACCAT+AGG | + | chr2_1:71279773-71279792 | None:intergenic | 35.0% | |
| ATGCTTGACAAAAAAACAGC+AGG | - | chr2_1:71279791-71279810 | Msa0222250:CDS | 35.0% | |
| ATTTGGACTGCAATTCTCAT+TGG | + | chr2_1:71279819-71279838 | None:intergenic | 35.0% | |
| AGTCCAAATGAGAGAACTTA+TGG | - | chr2_1:71279830-71279849 | Msa0222250:CDS | 35.0% | |
| TTCAATGCCTTATCCATTCT+AGG | + | chr2_1:71279881-71279900 | None:intergenic | 35.0% | |
| GTAAATGAGTTAAATGAGGC+AGG | - | chr2_1:71279980-71279999 | Msa0222250:CDS | 35.0% | |
| ATGTGGAATGAGTTCAAGAA+TGG | - | chr2_1:71280036-71280055 | Msa0222250:CDS | 35.0% | |
| AAGAATGGATGGAACACTTA+TGG | - | chr2_1:71280051-71280070 | Msa0222250:CDS | 35.0% | |
| TCATGTCCACTATGTCTATA+TGG | + | chr2_1:71280085-71280104 | None:intergenic | 35.0% | |
| TGGATCTGTTTCATTGACAT+TGG | - | chr2_1:71280125-71280144 | Msa0222250:CDS | 35.0% | |
| CTTAGACATCTTGACTTTGT+AGG | - | chr2_1:71280177-71280196 | Msa0222250:CDS | 35.0% | |
| AAAGTCAAGACCACATTACA+AGG | + | chr2_1:71280220-71280239 | None:intergenic | 35.0% | |
| !! | TGTAATGTGGTCTTGACTTT+TGG | - | chr2_1:71280220-71280239 | Msa0222250:CDS | 35.0% |
| !! | GTAATGTGGTCTTGACTTTT+GGG | - | chr2_1:71280221-71280240 | Msa0222250:CDS | 35.0% |
| CATTTCTGACTCTGACCTAT+TGG | + | chr2_1:71277201-71277220 | None:intergenic | 40.0% | |
| CAATAGGTCAGAGTCAGAAA+TGG | - | chr2_1:71277199-71277218 | Msa0222250:CDS | 40.0% | |
| TTATTCCAACCACCAAGTCT+TGG | + | chr2_1:71277454-71277473 | None:intergenic | 40.0% | |
| CTAGCAGGACTCTTTGAATT+AGG | + | chr2_1:71277479-71277498 | None:intergenic | 40.0% | |
| AGTCCTGCTAGTACTAGTTA+TGG | - | chr2_1:71277488-71277507 | Msa0222250:intron | 40.0% | |
| ! | TGGGTTTTGCTCTCCAAAAT+TGG | - | chr2_1:71277598-71277617 | Msa0222250:intron | 40.0% |
| GAAACTGAGGTTGCTTCTAA+AGG | - | chr2_1:71277641-71277660 | Msa0222250:intron | 40.0% | |
| !! | CAATGTTTCCTAGTGCTGAT+TGG | - | chr2_1:71277690-71277709 | Msa0222250:intron | 40.0% |
| !! | ATGTTTCCTAGTGCTGATTG+GGG | - | chr2_1:71277692-71277711 | Msa0222250:intron | 40.0% |
| GTAGCTTAGGTGTTTCTTTG+CGG | - | chr2_1:71277723-71277742 | Msa0222250:CDS | 40.0% | |
| GCTTATGTTCATGCAAGAAG+AGG | - | chr2_1:71277772-71277791 | Msa0222250:intron | 40.0% | |
| AACCCCTTGAAGCCTATAAA+TGG | - | chr2_1:71278124-71278143 | Msa0222250:CDS | 40.0% | |
| ACCCCTTGAAGCCTATAAAT+GGG | - | chr2_1:71278125-71278144 | Msa0222250:CDS | 40.0% | |
| ACAACCTTTCCCCCATTTAT+AGG | + | chr2_1:71278139-71278158 | None:intergenic | 40.0% | |
| ! | GGGAAAGGTTGTCATTTGAA+AGG | - | chr2_1:71278147-71278166 | Msa0222250:CDS | 40.0% |
| GTCATTTGAAAGGTCCATCT+AGG | - | chr2_1:71278157-71278176 | Msa0222250:CDS | 40.0% | |
| CAGACTTCACCATGAATTAC+TGG | + | chr2_1:71278356-71278375 | None:intergenic | 40.0% | |
| AAATTGAGCTAGTCAAAGCC+TGG | + | chr2_1:71278434-71278453 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGACACTGTTTTGC+CGG | - | chr2_1:71278718-71278737 | Msa0222250:intron | 40.0% |
| TTTGCCGGGATATGTGTAAT+AGG | - | chr2_1:71278733-71278752 | Msa0222250:intron | 40.0% | |
| GTACCATCAACAGATGCAAA+TGG | - | chr2_1:71278775-71278794 | Msa0222250:intron | 40.0% | |
| TCATCCTTTGAATCAGTAGC+AGG | - | chr2_1:71278803-71278822 | Msa0222250:intron | 40.0% | |
| !! | AAGACCTGCTACTGATTCAA+AGG | + | chr2_1:71278810-71278829 | None:intergenic | 40.0% |
| TTCAAAGCCAGACTGATGTA+AGG | + | chr2_1:71278845-71278864 | None:intergenic | 40.0% | |
| TTCGCAGGACTTCACTTATA+TGG | + | chr2_1:71278922-71278941 | None:intergenic | 40.0% | |
| ! | AAACCTGATGGAACCTTTTC+AGG | + | chr2_1:71279046-71279065 | None:intergenic | 40.0% |
| TGTGGATCATGAAAACCTGA+TGG | + | chr2_1:71279058-71279077 | None:intergenic | 40.0% | |
| ATCCACAACAACAGCATGTT+TGG | - | chr2_1:71279071-71279090 | Msa0222250:intron | 40.0% | |
| ! | CATGTTTATCGGTGTCTGTA+GGG | + | chr2_1:71279293-71279312 | None:intergenic | 40.0% |
| ! | ACATGTTTATCGGTGTCTGT+AGG | + | chr2_1:71279294-71279313 | None:intergenic | 40.0% |
| AGACACCGATAAACATGTGT+TGG | - | chr2_1:71279296-71279315 | Msa0222250:CDS | 40.0% | |
| GTGCCATAAGTTCTCTCATT+TGG | + | chr2_1:71279836-71279855 | None:intergenic | 40.0% | |
| ! | AGAACTTATGGCACTGAAGT+GGG | - | chr2_1:71279842-71279861 | Msa0222250:CDS | 40.0% |
| AGTTAAATGAGGCAGGACAA+TGG | - | chr2_1:71279987-71280006 | Msa0222250:CDS | 40.0% | |
| GGAATGAGTTCAAGAATGGA+TGG | - | chr2_1:71280040-71280059 | Msa0222250:CDS | 40.0% | |
| CATGATGTTGTGAGATCACT+TGG | - | chr2_1:71280100-71280119 | Msa0222250:CDS | 40.0% | |
| TGTTGTGAGATCACTTGGAT+TGG | - | chr2_1:71280105-71280124 | Msa0222250:CDS | 40.0% | |
| TTGACATTGGAACTTAGGCA+TGG | - | chr2_1:71280138-71280157 | Msa0222250:CDS | 40.0% | |
| TTGGCATGTACCTTGTAATG+TGG | - | chr2_1:71280207-71280226 | Msa0222250:CDS | 40.0% | |
| ATCATCACACCAAGACTTGG+TGG | - | chr2_1:71277442-71277461 | Msa0222250:intron | 45.0% | |
| TATGGAAATCTGGGTCCACT+TGG | - | chr2_1:71277506-71277525 | Msa0222250:intron | 45.0% | |
| TAACCAGTAAAAGGGCCAAG+TGG | + | chr2_1:71277524-71277543 | None:intergenic | 45.0% | |
| !! | TGTTTCCTAGTGCTGATTGG+GGG | - | chr2_1:71277693-71277712 | Msa0222250:intron | 45.0% |
| ! | TCTAGAGACTAGAGAGCATG+AGG | - | chr2_1:71278014-71278033 | Msa0222250:CDS | 45.0% |
| CCCCATTTATAGGCTTCAAG+GGG | + | chr2_1:71278129-71278148 | None:intergenic | 45.0% | |
| CCCCTTGAAGCCTATAAATG+GGG | - | chr2_1:71278126-71278145 | Msa0222250:CDS | 45.0% | |
| CCCCCATTTATAGGCTTCAA+GGG | + | chr2_1:71278130-71278149 | None:intergenic | 45.0% | |
| CCCTTGAAGCCTATAAATGG+GGG | - | chr2_1:71278127-71278146 | Msa0222250:CDS | 45.0% | |
| TCCCCCATTTATAGGCTTCA+AGG | + | chr2_1:71278131-71278150 | None:intergenic | 45.0% | |
| GAAGCCTATAAATGGGGGAA+AGG | - | chr2_1:71278132-71278151 | Msa0222250:CDS | 45.0% | |
| ACCATGAATTACTGGACGAG+GGG | + | chr2_1:71278348-71278367 | None:intergenic | 45.0% | |
| CACCATGAATTACTGGACGA+GGG | + | chr2_1:71278349-71278368 | None:intergenic | 45.0% | |
| TCACCATGAATTACTGGACG+AGG | + | chr2_1:71278350-71278369 | None:intergenic | 45.0% | |
| AATTTGTACCATGGACCTCC+AGG | - | chr2_1:71278413-71278432 | Msa0222250:intron | 45.0% | |
| CAGTATAGACCCAATTGCTG+TGG | + | chr2_1:71278464-71278483 | None:intergenic | 45.0% | |
| TTTGGGCTCGAATTCCATCT+TGG | + | chr2_1:71278492-71278511 | None:intergenic | 45.0% | |
| !! | GGTTTTGACACTGTTTTGCC+GGG | - | chr2_1:71278719-71278738 | Msa0222250:intron | 45.0% |
| AGCTACTCCTTACATCAGTC+TGG | - | chr2_1:71278835-71278854 | Msa0222250:intron | 45.0% | |
| ! | GGCTTTGATCCATGCATCTT+AGG | + | chr2_1:71279009-71279028 | None:intergenic | 45.0% |
| AGACCTGAAAAGGTTCCATC+AGG | - | chr2_1:71279040-71279059 | Msa0222250:intron | 45.0% | |
| CTCCAAACATGCTGTTGTTG+TGG | + | chr2_1:71279076-71279095 | None:intergenic | 45.0% | |
| CACAACAACAGCATGTTTGG+AGG | - | chr2_1:71279074-71279093 | Msa0222250:intron | 45.0% | |
| GAGACAGAGAGACAAACGTA+CGG | + | chr2_1:71279169-71279188 | None:intergenic | 45.0% | |
| !! | CATGTGTTGGCTACTCAAAC+TGG | - | chr2_1:71279309-71279328 | Msa0222250:CDS | 45.0% |
| TTTATGGATCTGGCCAACAG+TGG | + | chr2_1:71279500-71279519 | None:intergenic | 45.0% | |
| ! | GAGAACTTATGGCACTGAAG+TGG | - | chr2_1:71279841-71279860 | Msa0222250:CDS | 45.0% |
| ATGCCTTATCCATTCTAGGC+TGG | + | chr2_1:71279877-71279896 | None:intergenic | 45.0% | |
| GACAATGGAGTAGAGAGAAG+AGG | - | chr2_1:71280002-71280021 | Msa0222250:CDS | 45.0% | |
| ! | GAACTTAGGCATGGTGTTGA+AGG | - | chr2_1:71280147-71280166 | Msa0222250:CDS | 45.0% |
| !!! | AGTTTAATTATTATATTTTT+TGG | - | chr2_1:71279246-71279265 | Msa0222250:intron | 5.0% |
| !!! | TATGATTTTTTTTTTTTTTA+TGG | + | chr2_1:71279516-71279535 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAAAAAATCATA+AGG | - | chr2_1:71279516-71279535 | Msa0222250:CDS | 5.0% |
| GTGCAGCTTCAGAACCAAGT+AGG | - | chr2_1:71276940-71276959 | Msa0222250:CDS | 50.0% | |
| !! | TCAGTGAGTTGATGTGGAGC+AGG | + | chr2_1:71277053-71277072 | None:intergenic | 50.0% |
| !! | TCACACCAAGACTTGGTGGT+TGG | - | chr2_1:71277446-71277465 | Msa0222250:intron | 50.0% |
| TGGGGGAACAGAAGTAGCTT+AGG | - | chr2_1:71277710-71277729 | Msa0222250:intron | 50.0% | |
| ! | GCTGTTGTGTGGACTGCAAA+AGG | - | chr2_1:71277927-71277946 | Msa0222250:CDS | 50.0% |
| TCCCCTCGTCCAGTAATTCA+TGG | - | chr2_1:71278344-71278363 | Msa0222250:intron | 50.0% | |
| TTGAGCTAGTCAAAGCCTGG+AGG | + | chr2_1:71278431-71278450 | None:intergenic | 50.0% | |
| TGTGGCAAGCCTAAGATGCA+TGG | - | chr2_1:71278997-71279016 | Msa0222250:intron | 50.0% | |
| ! | CAGTGGCGATTCTAAGAGCT+TGG | - | chr2_1:71279122-71279141 | Msa0222250:intron | 50.0% |
| !! | AACTGGTCTTTCGCGAAACC+AGG | - | chr2_1:71279326-71279345 | Msa0222250:CDS | 50.0% |
| CAAAGGAGTAGGAACCTACC+TGG | + | chr2_1:71279347-71279366 | None:intergenic | 50.0% | |
| TTAATGCTCGAGTTCGCGTG+TGG | - | chr2_1:71279744-71279763 | Msa0222250:CDS | 50.0% | |
| TTCATGCAGCCAGCCTAGAA+TGG | - | chr2_1:71279865-71279884 | Msa0222250:CDS | 50.0% | |
| CAGCCAGCCTAGAATGGATA+AGG | - | chr2_1:71279871-71279890 | Msa0222250:CDS | 50.0% | |
| ! | GGTCCACTTGGCCCTTTTAC+TGG | - | chr2_1:71277518-71277537 | Msa0222250:intron | 55.0% |
| CTGTTCCCCCAATCAGCACT+AGG | + | chr2_1:71277701-71277720 | None:intergenic | 55.0% | |
| AGTCAAAGCCTGGAGGTCCA+TGG | + | chr2_1:71278424-71278443 | None:intergenic | 55.0% | |
| CATGTTTGGAGGCCTCAGAG+AGG | - | chr2_1:71279085-71279104 | Msa0222250:intron | 55.0% | |
| !! | CGTTCTGGAAAGCCTCTCTG+AGG | + | chr2_1:71279100-71279119 | None:intergenic | 55.0% |
| AGGCTTTCCAGAACGTGCAG+TGG | - | chr2_1:71279105-71279124 | Msa0222250:intron | 55.0% | |
| AGAATCGCCACTGCACGTTC+TGG | + | chr2_1:71279115-71279134 | None:intergenic | 55.0% | |
| GGTCTTTCGCGAAACCAGGT+AGG | - | chr2_1:71279330-71279349 | Msa0222250:CDS | 55.0% | |
| AGTTCGCGTGTGGAAGCCTA+TGG | - | chr2_1:71279754-71279773 | Msa0222250:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 71276807 | 71280256 | 71276807 | ID=Msa0222250;Name=Msa0222250 |
| chr2_1 | mRNA | 71276807 | 71280256 | 71276807 | ID=Msa0222250-mRNA-1;Parent=Msa0222250;Name=Msa0222250-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.5|1|1|1|4|115|624 |
| chr2_1 | exon | 71276807 | 71277335 | 71276807 | ID=Msa0222250-mRNA-1:exon:20498;Parent=Msa0222250-mRNA-1 |
| chr2_1 | exon | 71277716 | 71277776 | 71277716 | ID=Msa0222250-mRNA-1:exon:20497;Parent=Msa0222250-mRNA-1 |
| chr2_1 | exon | 71277896 | 71278308 | 71277896 | ID=Msa0222250-mRNA-1:exon:20496;Parent=Msa0222250-mRNA-1 |
| chr2_1 | exon | 71279270 | 71280256 | 71279270 | ID=Msa0222250-mRNA-1:exon:20495;Parent=Msa0222250-mRNA-1 |
| chr2_1 | CDS | 71279270 | 71280256 | 71279270 | ID=Msa0222250-mRNA-1:cds;Parent=Msa0222250-mRNA-1 |
| chr2_1 | CDS | 71277896 | 71278308 | 71277896 | ID=Msa0222250-mRNA-1:cds;Parent=Msa0222250-mRNA-1 |
| chr2_1 | CDS | 71277716 | 71277776 | 71277716 | ID=Msa0222250-mRNA-1:cds;Parent=Msa0222250-mRNA-1 |
| chr2_1 | CDS | 71276922 | 71277335 | 71276922 | ID=Msa0222250-mRNA-1:cds;Parent=Msa0222250-mRNA-1 |
| chr2_1 | three_prime_UTR | 71276807 | 71276921 | 71276807 | ID=Msa0222250-mRNA-1:three_prime_utr;Parent=Msa0222250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
