Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338970 | KEH39362.1 | 95.032 | 624 | 23 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338970 | sp|Q9SJJ3|BLH8_ARATH | 50.676 | 296 | 105 | 6 | 238 | 526 | 251 | 512 | 5.98e-81 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0338970 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197100 | Msa0338970 | 0.823630 | 1.249114e-53 | -8.615850e-47 |
| Msa0222250 | Msa0338970 | 0.828184 | 1.034937e-54 | -8.615850e-47 |
| Msa0239030 | Msa0338970 | 0.814109 | 1.821241e-51 | -8.615850e-47 |
| Msa0301580 | Msa0338970 | 0.848302 | 6.682694e-60 | -8.615850e-47 |
| Msa0316680 | Msa0338970 | 0.808697 | 2.726183e-50 | -8.615850e-47 |
| Msa0333450 | Msa0338970 | 0.804954 | 1.685547e-49 | -8.615850e-47 |
| Msa0333700 | Msa0338970 | 0.807913 | 4.006786e-50 | -8.615850e-47 |
| Msa0338970 | Msa0343660 | 0.808526 | 2.965541e-50 | -8.615850e-47 |
| Msa0338970 | Msa0739580 | 0.812482 | 4.146450e-51 | -8.615850e-47 |
| Msa0338970 | Msa0782360 | 0.810081 | 1.375944e-50 | -8.615850e-47 |
| Msa0338970 | Msa1406780 | 0.813227 | 2.847793e-51 | -8.615850e-47 |
| Msa0338970 | Msa1431850 | 0.817955 | 2.521583e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338970 | MtrunA17_Chr2g0327021 | 95.032 | 624 | 23 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1170 |
| Msa0338970 | MtrunA17_Chr4g0028701 | 49.083 | 436 | 164 | 12 | 222 | 620 | 218 | 632 | 1.42e-116 | 362 |
| Msa0338970 | MtrunA17_Chr7g0240371 | 47.122 | 278 | 123 | 5 | 236 | 513 | 124 | 377 | 1.98e-76 | 253 |
| Msa0338970 | MtrunA17_Chr4g0008591 | 47.719 | 285 | 116 | 4 | 242 | 521 | 189 | 445 | 5.42e-75 | 251 |
| Msa0338970 | MtrunA17_Chr8g0373801 | 43.416 | 281 | 135 | 5 | 245 | 515 | 384 | 650 | 4.09e-65 | 229 |
| Msa0338970 | MtrunA17_Chr5g0403251 | 41.818 | 275 | 136 | 7 | 245 | 508 | 330 | 591 | 2.37e-60 | 214 |
| Msa0338970 | MtrunA17_Chr1g0177751 | 43.678 | 261 | 128 | 4 | 248 | 502 | 160 | 407 | 2.80e-60 | 212 |
| Msa0338970 | MtrunA17_Chr8g0387321 | 45.211 | 261 | 125 | 5 | 249 | 504 | 185 | 432 | 6.87e-60 | 211 |
| Msa0338970 | MtrunA17_Chr7g0267481 | 47.345 | 226 | 98 | 4 | 303 | 525 | 232 | 439 | 2.82e-59 | 210 |
| Msa0338970 | MtrunA17_Chr4g0025521 | 41.456 | 316 | 153 | 8 | 249 | 555 | 217 | 509 | 8.38e-59 | 209 |
| Msa0338970 | MtrunA17_Chr1g0155681 | 43.310 | 284 | 124 | 7 | 253 | 522 | 174 | 434 | 1.25e-58 | 207 |
| Msa0338970 | MtrunA17_Chr3g0141941 | 40.278 | 288 | 139 | 5 | 245 | 521 | 158 | 423 | 1.86e-58 | 204 |
| Msa0338970 | MtrunA17_Chr3g0141931 | 39.216 | 306 | 142 | 9 | 231 | 523 | 154 | 428 | 2.09e-55 | 194 |
| Msa0338970 | MtrunA17_Chr1g0151681 | 35.577 | 208 | 114 | 4 | 313 | 519 | 315 | 503 | 3.63e-34 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338970 | AT2G27990.1 | 50.676 | 296 | 105 | 6 | 238 | 526 | 251 | 512 | 6.08e-82 | 269 |
| Msa0338970 | AT5G02030.1 | 47.262 | 347 | 137 | 11 | 185 | 511 | 98 | 418 | 2.99e-73 | 246 |
| Msa0338970 | AT4G34610.2 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0338970 | AT4G34610.4 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0338970 | AT4G34610.3 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0338970 | AT4G34610.1 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.79e-66 | 227 |
| Msa0338970 | AT1G75410.1 | 39.306 | 346 | 192 | 6 | 168 | 508 | 81 | 413 | 1.65e-65 | 224 |
| Msa0338970 | AT1G75410.2 | 39.306 | 346 | 192 | 6 | 168 | 508 | 81 | 413 | 1.65e-65 | 224 |
| Msa0338970 | AT4G36870.2 | 46.067 | 267 | 124 | 6 | 249 | 508 | 312 | 565 | 3.76e-65 | 228 |
| Msa0338970 | AT4G36870.1 | 46.067 | 267 | 124 | 6 | 249 | 508 | 312 | 565 | 3.76e-65 | 228 |
| Msa0338970 | AT2G23760.2 | 43.911 | 271 | 133 | 5 | 245 | 508 | 233 | 491 | 4.52e-62 | 217 |
| Msa0338970 | AT2G23760.1 | 43.911 | 271 | 133 | 5 | 245 | 508 | 233 | 491 | 4.52e-62 | 217 |
| Msa0338970 | AT2G23760.3 | 43.911 | 271 | 133 | 5 | 245 | 508 | 233 | 491 | 4.52e-62 | 217 |
| Msa0338970 | AT2G16400.1 | 40.625 | 288 | 146 | 7 | 244 | 530 | 109 | 372 | 3.79e-61 | 211 |
| Msa0338970 | AT1G19700.1 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 5.90e-61 | 212 |
| Msa0338970 | AT1G19700.3 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 5.90e-61 | 212 |
| Msa0338970 | AT1G19700.5 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 5.90e-61 | 212 |
| Msa0338970 | AT1G19700.4 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 5.90e-61 | 212 |
| Msa0338970 | AT1G19700.2 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 5.90e-61 | 212 |
| Msa0338970 | AT2G35940.3 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.46e-59 | 211 |
| Msa0338970 | AT2G35940.1 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.46e-59 | 211 |
| Msa0338970 | AT2G35940.2 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.46e-59 | 211 |
| Msa0338970 | AT2G27220.1 | 37.618 | 319 | 146 | 7 | 220 | 538 | 56 | 321 | 8.39e-53 | 187 |
| Msa0338970 | AT2G27220.3 | 37.618 | 319 | 146 | 7 | 220 | 538 | 56 | 321 | 8.39e-53 | 187 |
| Msa0338970 | AT2G23760.4 | 36.842 | 323 | 133 | 6 | 245 | 508 | 233 | 543 | 1.73e-52 | 192 |
| Msa0338970 | AT5G41410.1 | 38.971 | 272 | 146 | 4 | 250 | 508 | 194 | 458 | 2.29e-52 | 190 |
| Msa0338970 | AT4G36870.4 | 43.145 | 248 | 121 | 6 | 249 | 489 | 312 | 546 | 4.18e-52 | 188 |
| Msa0338970 | AT1G75410.3 | 37.117 | 326 | 187 | 6 | 168 | 488 | 81 | 393 | 1.08e-51 | 183 |
| Msa0338970 | AT4G36870.3 | 42.683 | 246 | 121 | 6 | 249 | 487 | 312 | 544 | 1.10e-50 | 184 |
| Msa0338970 | AT2G27990.2 | 46.154 | 234 | 88 | 5 | 238 | 467 | 251 | 450 | 2.03e-50 | 181 |
| Msa0338970 | AT1G75430.1 | 46.354 | 192 | 85 | 4 | 322 | 508 | 91 | 269 | 7.74e-50 | 175 |
| Msa0338970 | AT2G27220.2 | 35.905 | 337 | 145 | 8 | 220 | 538 | 56 | 339 | 4.38e-49 | 177 |
| Msa0338970 | AT4G32980.1 | 31.206 | 282 | 169 | 6 | 245 | 524 | 197 | 455 | 9.88e-38 | 146 |
| Msa0338970 | AT4G32980.2 | 31.206 | 282 | 169 | 6 | 245 | 524 | 197 | 455 | 9.88e-38 | 146 |
| Msa0338970 | AT1G75430.2 | 38.816 | 152 | 75 | 4 | 321 | 467 | 90 | 228 | 1.05e-24 | 105 |
Find 124 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATGTTGTCACCAATTT+TGG | 0.122717 | 2_4:+59729464 | None:intergenic |
| CATTCAGAACTGAGTGATTT+TGG | 0.129421 | 2_4:-59730067 | Msa0338970:CDS |
| TAAGAGTTCAAGATTCTTAA+AGG | 0.151069 | 2_4:-59729519 | Msa0338970:CDS |
| TGACTTTGTAGGATGATTAT+TGG | 0.203952 | 2_4:-59726891 | Msa0338970:three_prime_UTR |
| AATTCTCTTTCTTATGTATA+TGG | 0.222196 | 2_4:-59729974 | Msa0338970:CDS |
| TAGAGAGAAGAGGTATAAAT+TGG | 0.239051 | 2_4:-59727067 | Msa0338970:CDS |
| AATGATAAGCTTTGTGGTTT+TGG | 0.247497 | 2_4:+59729788 | None:intergenic |
| GAGGCCTCAGAGAGGCTTTC+CGG | 0.248276 | 2_4:-59727983 | Msa0338970:CDS |
| CTAGCAGGACTCTTTGAATT+AGG | 0.255997 | 2_4:+59729599 | None:intergenic |
| CTTAGACATCTTGACTTTGT+AGG | 0.257836 | 2_4:-59726902 | Msa0338970:three_prime_UTR |
| TTCGCAGGACTTCACTTATA+TGG | 0.258775 | 2_4:+59728157 | None:intergenic |
| TTCAATGCCTTATCCATTCT+AGG | 0.259330 | 2_4:+59727201 | None:intergenic |
| ATAGTAGCATAACCAGTAAA+AGG | 0.261980 | 2_4:+59729545 | None:intergenic |
| GCTTTATTCTGCTGATAATC+TGG | 0.263343 | 2_4:+59729329 | None:intergenic |
| CCTTTGGAGTATCAAGAATT+AGG | 0.272397 | 2_4:-59730157 | Msa0338970:CDS |
| CATTATCATCAGCAACATTA+TGG | 0.277940 | 2_4:-59730100 | Msa0338970:CDS |
| GTTGCACAAAATTTGTTAGA+TGG | 0.282371 | 2_4:-59729497 | Msa0338970:CDS |
| GTCAACTAGTTTAGTACTAT+TGG | 0.285954 | 2_4:+59728110 | None:intergenic |
| GTGCCATAAGTTCTCTCATT+TGG | 0.291427 | 2_4:+59727246 | None:intergenic |
| GATTTGAAATAGCATTATTT+AGG | 0.301108 | 2_4:+59728187 | None:intergenic |
| GATTAATGCAGGTATCAAAT+TGG | 0.308082 | 2_4:-59727362 | Msa0338970:intron |
| TAGTACTAGTTATGGAAATC+TGG | 0.321419 | 2_4:-59729579 | Msa0338970:CDS |
| AAGAATGGATGGAACACTTA+TGG | 0.325450 | 2_4:-59727028 | Msa0338970:CDS |
| CATTTCTGACTCTGACCTAT+TGG | 0.330237 | 2_4:+59729877 | None:intergenic |
| AAACCATTTGCATCTGTTGA+TGG | 0.333209 | 2_4:+59728298 | None:intergenic |
| AGTAGCCAACACATGTTTAT+CGG | 0.338043 | 2_4:+59727775 | None:intergenic |
| ATCCACAACAACAGCATGTT+TGG | 0.346556 | 2_4:-59728005 | Msa0338970:CDS |
| AATGTTTCCTAGTGCTGATT+GGG | 0.352550 | 2_4:-59729384 | Msa0338970:CDS |
| GGCTTTGATCCATGCATCTT+AGG | 0.352803 | 2_4:+59728070 | None:intergenic |
| TATGGTGGTGAAAAGCAATT+AGG | 0.353455 | 2_4:-59729956 | Msa0338970:CDS |
| TCATGTCCACTATGTCTATA+TGG | 0.356435 | 2_4:+59726997 | None:intergenic |
| TACTGCTACTTCAAATCCTT+TGG | 0.357101 | 2_4:-59730173 | Msa0338970:CDS |
| CAATGTTTCCTAGTGCTGAT+TGG | 0.357408 | 2_4:-59729385 | Msa0338970:CDS |
| ATTTCTGTTGATGAATAAAC+TGG | 0.361530 | 2_4:+59730211 | None:intergenic |
| ATCAACTCACTGATCAATAT+TGG | 0.368498 | 2_4:-59730015 | Msa0338970:CDS |
| TGTAATGTGGTCTTGACTCT+TGG | 0.371143 | 2_4:-59726859 | Msa0338970:three_prime_UTR |
| GAATCAGAATAATTCTTTGC+AGG | 0.380802 | 2_4:-59729921 | Msa0338970:CDS |
| AGAATCGCCACTGCACGTTC+CGG | 0.392563 | 2_4:+59727964 | None:intergenic |
| CATGTGTTGGCTACTCAAAC+TGG | 0.395238 | 2_4:-59727767 | Msa0338970:CDS |
| AGTCCAAATGAGAGAACTTA+TGG | 0.398547 | 2_4:-59727249 | Msa0338970:CDS |
| ATTTGGACTGCAATTCTCAT+TGG | 0.400633 | 2_4:+59727263 | None:intergenic |
| GTAATGTGGTCTTGACTCTT+GGG | 0.406662 | 2_4:-59726858 | Msa0338970:three_prime_UTR |
| TTTCATTGACATTGGAACTT+AGG | 0.407702 | 2_4:-59726946 | Msa0338970:exon |
| AGTCCTGCTAGTACTAGTTA+TGG | 0.414886 | 2_4:-59729587 | Msa0338970:CDS |
| CAAATTCAATGTATGGAACT+TGG | 0.416249 | 2_4:-59727147 | Msa0338970:CDS |
| TCCACAATCTCTAGAAATGA+TGG | 0.429326 | 2_4:+59729658 | None:intergenic |
| TGTTGCATCATTAACCTACT+TGG | 0.429908 | 2_4:+59730121 | None:intergenic |
| TGAAAATCAAATTCAATGTA+TGG | 0.431807 | 2_4:-59727154 | Msa0338970:CDS |
| TTGCACAAAATTTGTTAGAT+GGG | 0.442823 | 2_4:-59729496 | Msa0338970:CDS |
| ACAAAAGAATAGACCTGAAA+AGG | 0.450106 | 2_4:-59728046 | Msa0338970:CDS |
| ACTCTTGGGCATTGAAATGA+AGG | 0.451673 | 2_4:-59726844 | None:intergenic |
| CATGATGTTGTGAGATCACT+TGG | 0.453466 | 2_4:-59726979 | Msa0338970:CDS |
| GAAACTGAGGTTGCTTCTAA+AGG | 0.458889 | 2_4:-59729434 | Msa0338970:CDS |
| TCCATCATTTCTAGAGATTG+TGG | 0.465297 | 2_4:-59729659 | Msa0338970:CDS |
| AGCTACTCCTTACATCAGTC+TGG | 0.473021 | 2_4:-59728241 | Msa0338970:CDS |
| TCATCCTTTGAATCAGTAGC+AGG | 0.475962 | 2_4:-59728273 | Msa0338970:CDS |
| ATGCCTTATCCATTCTAGGC+TGG | 0.476270 | 2_4:+59727205 | None:intergenic |
| AAACTGAGGTTGCTTCTAAA+GGG | 0.476654 | 2_4:-59729433 | Msa0338970:CDS |
| TGGATCTGTTTCATTGACAT+TGG | 0.478654 | 2_4:-59726954 | Msa0338970:exon |
| CAGCCAGCCTAGAATGGATA+AGG | 0.478775 | 2_4:-59727208 | Msa0338970:CDS |
| GAGAACTTATGGCACTGAAG+TGG | 0.480355 | 2_4:-59727238 | Msa0338970:CDS |
| AGACCTGAAAAGGTTCCATC+AGG | 0.481595 | 2_4:-59728036 | Msa0338970:CDS |
| GTAGCTTAGGTGTTTCTTTG+CGG | 0.484731 | 2_4:-59729352 | Msa0338970:CDS |
| CAATAGGTCAGAGTCAGAAA+TGG | 0.486499 | 2_4:-59729876 | Msa0338970:CDS |
| AGTGATAATGATAAGCTTTG+TGG | 0.494435 | 2_4:+59729782 | None:intergenic |
| TTCATGCAGCCAGCCTAGAA+TGG | 0.494640 | 2_4:-59727214 | Msa0338970:CDS |
| TCAAGTCTATCACTTCCAAT+AGG | 0.496873 | 2_4:-59729892 | Msa0338970:CDS |
| AACTGGTCTTTCGCGAAACC+AGG | 0.498308 | 2_4:-59727750 | Msa0338970:intron |
| TAGTTTAGTACTATTGGTTG+TGG | 0.502195 | 2_4:+59728116 | None:intergenic |
| CATGTTTATCGGTGTCTGTA+GGG | 0.506317 | 2_4:+59727786 | None:intergenic |
| GTAAATGAGTTAAATGAGGC+AGG | 0.508118 | 2_4:-59727099 | Msa0338970:CDS |
| AATAGTCAAGGAATTTGTGT+TGG | 0.508836 | 2_4:-59729836 | Msa0338970:CDS |
| TAGTAGCATAACCAGTAAAA+GGG | 0.510354 | 2_4:+59729546 | None:intergenic |
| AGTTCGCGTGTGGAAGCCTA+TGG | 0.514217 | 2_4:-59727325 | Msa0338970:CDS |
| GAACTTAGGCATGGTGTTGA+AGG | 0.518287 | 2_4:-59726932 | Msa0338970:three_prime_UTR |
| TTAGTACTATTGGTTGTGGT+CGG | 0.518791 | 2_4:+59728120 | None:intergenic |
| AGTACTAGTTATGGAAATCT+GGG | 0.524187 | 2_4:-59729578 | Msa0338970:CDS |
| CAGTGGCGATTCTAAGAGCT+TGG | 0.530709 | 2_4:-59727954 | Msa0338970:CDS |
| ACATGTTTATCGGTGTCTGT+AGG | 0.537212 | 2_4:+59727785 | None:intergenic |
| AGAGTCAAGACCACATTACA+AGG | 0.537714 | 2_4:+59726862 | None:intergenic |
| ATGTGTACTTCTTCAACCAT+AGG | 0.539006 | 2_4:+59727309 | None:intergenic |
| AGAACTTATGGCACTGAAGT+GGG | 0.539197 | 2_4:-59727237 | Msa0338970:CDS |
| TGTTGTGAGATCACTTGGAT+TGG | 0.539982 | 2_4:-59726974 | Msa0338970:CDS |
| TCACATCAAGACTTGGTGGT+TGG | 0.544042 | 2_4:-59729629 | Msa0338970:CDS |
| ATGTGGAATGAGTTCAAGAA+TGG | 0.547007 | 2_4:-59727043 | Msa0338970:CDS |
| AAGACCTGCTACTGATTCAA+AGG | 0.547681 | 2_4:+59728269 | None:intergenic |
| GCTTATGTTCATGCAAGAAG+AGG | 0.548768 | 2_4:-59729303 | Msa0338970:intron |
| TTCAAAGCCAGACTGATGTA+AGG | 0.549663 | 2_4:+59728234 | None:intergenic |
| TCTCTTTCTTATGTATATGG+TGG | 0.551473 | 2_4:-59729971 | Msa0338970:CDS |
| TATGGAAATCTGGGTCCACT+TGG | 0.554507 | 2_4:-59729569 | Msa0338970:CDS |
| GTATTGACAAATCATTTCGC+AGG | 0.555399 | 2_4:+59728142 | None:intergenic |
| AAATCACTCAGTTCTGAATG+AGG | 0.555669 | 2_4:+59730070 | None:intergenic |
| CACAACAACAGCATGTTTGG+AGG | 0.557669 | 2_4:-59728002 | Msa0338970:CDS |
| GTACCATCAACAGATGCAAA+TGG | 0.563901 | 2_4:-59728301 | Msa0338970:CDS |
| AAGAGGTATAAATTGGAATG+TGG | 0.564061 | 2_4:-59727060 | Msa0338970:CDS |
| TTTCCATAACTAGTACTAGC+AGG | 0.567280 | 2_4:+59729584 | None:intergenic |
| AGGCTTTCCGGAACGTGCAG+TGG | 0.573018 | 2_4:-59727971 | Msa0338970:CDS |
| ATCATCACATCAAGACTTGG+TGG | 0.576817 | 2_4:-59729633 | Msa0338970:CDS |
| CCTAATTCTTGATACTCCAA+AGG | 0.577755 | 2_4:+59730157 | None:intergenic |
| CTCCAAACATGCTGTTGTTG+TGG | 0.578756 | 2_4:+59728003 | None:intergenic |
| GTGCAGCTTCAGAACCAAGT+AGG | 0.580096 | 2_4:-59730135 | Msa0338970:CDS |
| TCAGTGAGTTGATGTGGAGC+AGG | 0.585114 | 2_4:+59730025 | None:intergenic |
| ATGTTTCCTAGTGCTGATTG+GGG | 0.585973 | 2_4:-59729383 | Msa0338970:CDS |
| AGACACCGATAAACATGTGT+TGG | 0.590173 | 2_4:-59727780 | Msa0338970:CDS |
| AGTTAAATGAGGCAGGACAA+TGG | 0.596972 | 2_4:-59727092 | Msa0338970:CDS |
| TGTGGCAAGCCTAAGATGCA+TGG | 0.598137 | 2_4:-59728079 | Msa0338970:CDS |
| AGAAGTAAATGAGTTAAATG+AGG | 0.599304 | 2_4:-59727103 | Msa0338970:CDS |
| TTGACATTGGAACTTAGGCA+TGG | 0.600463 | 2_4:-59726941 | Msa0338970:exon |
| CTTATGCATCATAATAGTCA+AGG | 0.601239 | 2_4:-59729848 | Msa0338970:CDS |
| TTAATGCTCGAGTTCGCGTG+TGG | 0.602257 | 2_4:-59727335 | Msa0338970:CDS |
| GGAATGAGTTCAAGAATGGA+TGG | 0.604592 | 2_4:-59727039 | Msa0338970:CDS |
| TAATAATATTACACAAAACA+AGG | 0.606372 | 2_4:-59729753 | Msa0338970:CDS |
| ACTAGTTGACACTAATAATG+TGG | 0.612366 | 2_4:-59728097 | Msa0338970:CDS |
| TATTGATCAGTGAGTTGATG+TGG | 0.613925 | 2_4:+59730019 | None:intergenic |
| AAAATCATCACATCAAGACT+TGG | 0.614582 | 2_4:-59729636 | Msa0338970:CDS |
| GACAATGGAGTAGAGAGAAG+AGG | 0.622784 | 2_4:-59727077 | Msa0338970:CDS |
| ATGTGATGTTTCTGAAACTG+AGG | 0.624579 | 2_4:-59729447 | Msa0338970:CDS |
| TGTGGATCATGAAAACCTGA+TGG | 0.624654 | 2_4:+59728021 | None:intergenic |
| CAATCTCTAGAAATGATGGA+AGG | 0.631862 | 2_4:+59729662 | None:intergenic |
| TTGGCATGTACCTTGTAATG+TGG | 0.647194 | 2_4:-59726872 | Msa0338970:three_prime_UTR |
| TAACCAGTAAAAGGGCCAAG+TGG | 0.664374 | 2_4:+59729554 | None:intergenic |
| CGTTCCGGAAAGCCTCTCTG+AGG | 0.668109 | 2_4:+59727979 | None:intergenic |
| TGTTTCCTAGTGCTGATTGG+GGG | 0.672245 | 2_4:-59729382 | Msa0338970:CDS |
| CATGTTTGGAGGCCTCAGAG+AGG | 0.725435 | 2_4:-59727991 | Msa0338970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAAAAAAAAAATCATA+AGG | - | chr2_4:59729550-59729569 | Msa0338970:CDS | 10.0% |
| !! | ACTTAAAACAAAAATTTAAA+AGG | + | chr2_4:59729592-59729611 | None:intergenic | 10.0% |
| !! | TAATAATATTACACAAAACA+AGG | - | chr2_4:59727360-59727379 | Msa0338970:intron | 15.0% |
| !! | AATTGCAAAGATAAATAAAT+TGG | - | chr2_4:59728015-59728034 | Msa0338970:CDS | 15.0% |
| !! | TATCTCTACAAATAATTATA+TGG | - | chr2_4:59728288-59728307 | Msa0338970:CDS | 15.0% |
| !! | AATATAAAAAATTTGTACCA+TGG | - | chr2_4:59728441-59728460 | Msa0338970:intron | 15.0% |
| !!! | TAAAGTCAAAGTAATTTTAT+TGG | - | chr2_4:59728653-59728672 | Msa0338970:intron | 15.0% |
| !!! | ATGATAGTTATCATTTTTTT+TGG | - | chr2_4:59728714-59728733 | Msa0338970:intron | 15.0% |
| !!! | GATTTTTTTTTTTATAGATC+TGG | + | chr2_4:59729547-59729566 | None:intergenic | 15.0% |
| !! | AAATTTAAAAGGAATGAAAT+TGG | + | chr2_4:59729581-59729600 | None:intergenic | 15.0% |
| !! | TAAATAATCAAGTGTATTAT+AGG | + | chr2_4:59729679-59729698 | None:intergenic | 15.0% |
| !! | AATTCTCTTTCTTATGTATA+TGG | - | chr2_4:59727139-59727158 | Msa0338970:CDS | 20.0% |
| !!! | ATTTTTCTTCATATCACAAT+TGG | - | chr2_4:59728234-59728253 | Msa0338970:CDS | 20.0% |
| !! | ATAAAATTTGTATACTCTGT+TGG | - | chr2_4:59728333-59728352 | Msa0338970:intron | 20.0% |
| !! | CTCAAGAATCAAATAAAATT+AGG | + | chr2_4:59728685-59728704 | None:intergenic | 20.0% |
| !!! | GATTTGAAATAGCATTATTT+AGG | + | chr2_4:59728929-59728948 | None:intergenic | 20.0% |
| !!! | TTTCTATGTGTTATTTGTTA+AGG | - | chr2_4:59729251-59729270 | Msa0338970:intron | 20.0% |
| !!! | GAATTTTATATTGAGACATT+TGG | - | chr2_4:59729440-59729459 | Msa0338970:CDS | 20.0% |
| !!! | TCAATAGATTTTGTTACTTT+TGG | - | chr2_4:59729634-59729653 | Msa0338970:CDS | 20.0% |
| !! | TTAATTCATCAGATAAACAT+AGG | + | chr2_4:59729714-59729733 | None:intergenic | 20.0% |
| !! | ATGTTTATCTGATGAATTAA+TGG | - | chr2_4:59729714-59729733 | Msa0338970:CDS | 20.0% |
| !!! | ATACATTGAATTTGATTTTC+AGG | + | chr2_4:59729960-59729979 | None:intergenic | 20.0% |
| !! | TGAAAATCAAATTCAATGTA+TGG | - | chr2_4:59729959-59729978 | Msa0338970:CDS | 20.0% |
| !! | ATTTCTGTTGATGAATAAAC+TGG | + | chr2_4:59726905-59726924 | None:intergenic | 25.0% |
| !! | CTTATGTTTCACATTTTGAA+GGG | - | chr2_4:59727383-59727402 | Msa0338970:intron | 25.0% |
| !!! | TTATGTTTCACATTTTGAAG+GGG | - | chr2_4:59727384-59727403 | Msa0338970:intron | 25.0% |
| ! | TAAGAGTTCAAGATTCTTAA+AGG | - | chr2_4:59727594-59727613 | Msa0338970:intron | 25.0% |
| !!! | TTGCACAAAATTTGTTAGAT+GGG | - | chr2_4:59727617-59727636 | Msa0338970:intron | 25.0% |
| !! | TACAGTAACTTGTAAGAAAA+AGG | - | chr2_4:59727928-59727947 | Msa0338970:intron | 25.0% |
| !!! | GCAAGTTTTAATTTCTGAAA+AGG | - | chr2_4:59727990-59728009 | Msa0338970:CDS | 25.0% |
| !! | ATGATCTGTTAGATCATTTT+GGG | + | chr2_4:59728546-59728565 | None:intergenic | 25.0% |
| !! | TATGATCTGTTAGATCATTT+TGG | + | chr2_4:59728547-59728566 | None:intergenic | 25.0% |
| !!! | CTCTTATTTGTTTTGAAACT+TGG | - | chr2_4:59728612-59728631 | Msa0338970:intron | 25.0% |
| ! | TTAAGTAAATTCAAAGGAGT+AGG | + | chr2_4:59729395-59729414 | None:intergenic | 25.0% |
| ! | TCCTTTGAATTTACTTAAGT+TGG | - | chr2_4:59729397-59729416 | Msa0338970:CDS | 25.0% |
| ! | CCTTTGAATTTACTTAAGTT+GGG | - | chr2_4:59729398-59729417 | Msa0338970:CDS | 25.0% |
| !! | AAAGTATTTGACCATTGTTA+TGG | + | chr2_4:59729490-59729509 | None:intergenic | 25.0% |
| !!! | TATTGATTTTCTTAGTATGC+AGG | + | chr2_4:59729620-59729639 | None:intergenic | 25.0% |
| ! | TCAAGTGTATTATAGGAAAA+CGG | + | chr2_4:59729672-59729691 | None:intergenic | 25.0% |
| ! | AATTTGATACCTGCATTAAT+CGG | + | chr2_4:59729752-59729771 | None:intergenic | 25.0% |
| ! | AGAAGTAAATGAGTTAAATG+AGG | - | chr2_4:59730010-59730029 | Msa0338970:CDS | 25.0% |
| CATTATCATCAGCAACATTA+TGG | - | chr2_4:59727013-59727032 | Msa0338970:CDS | 30.0% | |
| !! | AACTGAGTGATTTTGGAAAT+TGG | - | chr2_4:59727053-59727072 | Msa0338970:CDS | 30.0% |
| ATCAACTCACTGATCAATAT+TGG | - | chr2_4:59727098-59727117 | Msa0338970:CDS | 30.0% | |
| TCTCTTTCTTATGTATATGG+TGG | - | chr2_4:59727142-59727161 | Msa0338970:CDS | 30.0% | |
| GAATCAGAATAATTCTTTGC+AGG | - | chr2_4:59727192-59727211 | Msa0338970:CDS | 30.0% | |
| CTTATGCATCATAATAGTCA+AGG | - | chr2_4:59727265-59727284 | Msa0338970:CDS | 30.0% | |
| AATAGTCAAGGAATTTGTGT+TGG | - | chr2_4:59727277-59727296 | Msa0338970:CDS | 30.0% | |
| !! | AATGATAAGCTTTGTGGTTT+TGG | + | chr2_4:59727328-59727347 | None:intergenic | 30.0% |
| ! | AGTGATAATGATAAGCTTTG+TGG | + | chr2_4:59727334-59727353 | None:intergenic | 30.0% |
| ! | GCTTATGTTTCACATTTTGA+AGG | - | chr2_4:59727382-59727401 | Msa0338970:intron | 30.0% |
| !! | TATGTTTCACATTTTGAAGG+GGG | - | chr2_4:59727385-59727404 | Msa0338970:intron | 30.0% |
| AAAATCATCACATCAAGACT+TGG | - | chr2_4:59727477-59727496 | Msa0338970:intron | 30.0% | |
| TAGTACTAGTTATGGAAATC+TGG | - | chr2_4:59727534-59727553 | Msa0338970:intron | 30.0% | |
| AGTACTAGTTATGGAAATCT+GGG | - | chr2_4:59727535-59727554 | Msa0338970:intron | 30.0% | |
| TAGTAGCATAACCAGTAAAA+GGG | + | chr2_4:59727570-59727589 | None:intergenic | 30.0% | |
| ATAGTAGCATAACCAGTAAA+AGG | + | chr2_4:59727571-59727590 | None:intergenic | 30.0% | |
| !! | GTTGCACAAAATTTGTTAGA+TGG | - | chr2_4:59727616-59727635 | Msa0338970:intron | 30.0% |
| AATTGTCTCAAGTATATGCA+AGG | + | chr2_4:59728091-59728110 | None:intergenic | 30.0% | |
| TCTATACTGAAAATCCAAGA+TGG | - | chr2_4:59728512-59728531 | Msa0338970:intron | 30.0% | |
| GTTATCAGCATCACTTTAAT+AGG | - | chr2_4:59728579-59728598 | Msa0338970:intron | 30.0% | |
| GGTTAATTGTCTTCAAAGAT+TGG | - | chr2_4:59728735-59728754 | Msa0338970:intron | 30.0% | |
| TTAACCTATTACACATATCC+CGG | + | chr2_4:59728777-59728796 | None:intergenic | 30.0% | |
| ! | TAGTTTAGTACTATTGGTTG+TGG | + | chr2_4:59729000-59729019 | None:intergenic | 30.0% |
| ! | GTCAACTAGTTTAGTACTAT+TGG | + | chr2_4:59729006-59729025 | None:intergenic | 30.0% |
| ACTAGTTGACACTAATAATG+TGG | - | chr2_4:59729016-59729035 | Msa0338970:intron | 30.0% | |
| !! | TTTCAGGTCTATTCTTTTGT+AGG | + | chr2_4:59729067-59729086 | None:intergenic | 30.0% |
| ACAAAAGAATAGACCTGAAA+AGG | - | chr2_4:59729067-59729086 | Msa0338970:intron | 30.0% | |
| CCCAACTTAAGTAAATTCAA+AGG | + | chr2_4:59729401-59729420 | None:intergenic | 30.0% | |
| !!! | GGGTTTTTGATTTGTTTGAT+TGG | - | chr2_4:59729418-59729437 | Msa0338970:CDS | 30.0% |
| ! | TCTTAAGTTGTCCATAACAA+TGG | - | chr2_4:59729476-59729495 | Msa0338970:CDS | 30.0% |
| !!! | CCAACAGTGGAAATTTTTTA+GGG | + | chr2_4:59729524-59729543 | None:intergenic | 30.0% |
| AAACTATATCCGATTAATGC+AGG | - | chr2_4:59729740-59729759 | Msa0338970:CDS | 30.0% | |
| GATTAATGCAGGTATCAAAT+TGG | - | chr2_4:59729751-59729770 | Msa0338970:CDS | 30.0% | |
| CAAATTCAATGTATGGAACT+TGG | - | chr2_4:59729966-59729985 | Msa0338970:CDS | 30.0% | |
| ! | TAGAGAGAAGAGGTATAAAT+TGG | - | chr2_4:59730046-59730065 | Msa0338970:CDS | 30.0% |
| ! | AAGAGGTATAAATTGGAATG+TGG | - | chr2_4:59730053-59730072 | Msa0338970:CDS | 30.0% |
| ! | TTTTTGCCATATAGACATAG+TGG | - | chr2_4:59730110-59730129 | Msa0338970:CDS | 30.0% |
| TTTCATTGACATTGGAACTT+AGG | - | chr2_4:59730167-59730186 | Msa0338970:CDS | 30.0% | |
| TGACTTTGTAGGATGATTAT+TGG | - | chr2_4:59730222-59730241 | Msa0338970:CDS | 30.0% | |
| ! | TACTGCTACTTCAAATCCTT+TGG | - | chr2_4:59726940-59726959 | Msa0338970:three_prime_UTR | 35.0% |
| CCTAATTCTTGATACTCCAA+AGG | + | chr2_4:59726959-59726978 | None:intergenic | 35.0% | |
| !! | CCTTTGGAGTATCAAGAATT+AGG | - | chr2_4:59726956-59726975 | Msa0338970:exon | 35.0% |
| TGTTGCATCATTAACCTACT+TGG | + | chr2_4:59726995-59727014 | None:intergenic | 35.0% | |
| !! | AAATCACTCAGTTCTGAATG+AGG | + | chr2_4:59727046-59727065 | None:intergenic | 35.0% |
| ! | CATTCAGAACTGAGTGATTT+TGG | - | chr2_4:59727046-59727065 | Msa0338970:CDS | 35.0% |
| !! | TATTGATCAGTGAGTTGATG+TGG | + | chr2_4:59727097-59727116 | None:intergenic | 35.0% |
| ! | TATGGTGGTGAAAAGCAATT+AGG | - | chr2_4:59727157-59727176 | Msa0338970:CDS | 35.0% |
| TCAAGTCTATCACTTCCAAT+AGG | - | chr2_4:59727221-59727240 | Msa0338970:CDS | 35.0% | |
| ! | CAATCTCTAGAAATGATGGA+AGG | + | chr2_4:59727454-59727473 | None:intergenic | 35.0% |
| ! | TCCATCATTTCTAGAGATTG+TGG | - | chr2_4:59727454-59727473 | Msa0338970:intron | 35.0% |
| ! | TCCACAATCTCTAGAAATGA+TGG | + | chr2_4:59727458-59727477 | None:intergenic | 35.0% |
| TTTCCATAACTAGTACTAGC+AGG | + | chr2_4:59727532-59727551 | None:intergenic | 35.0% | |
| ! | TCACATGTTGTCACCAATTT+TGG | + | chr2_4:59727652-59727671 | None:intergenic | 35.0% |
| !! | ATGTGATGTTTCTGAAACTG+AGG | - | chr2_4:59727666-59727685 | Msa0338970:intron | 35.0% |
| AAACTGAGGTTGCTTCTAAA+GGG | - | chr2_4:59727680-59727699 | Msa0338970:intron | 35.0% | |
| !! | AATGTTTCCTAGTGCTGATT+GGG | - | chr2_4:59727729-59727748 | Msa0338970:intron | 35.0% |
| ! | GCTTTATTCTGCTGATAATC+TGG | + | chr2_4:59727787-59727806 | None:intergenic | 35.0% |
| CACAACAGCATAAAGTCATT+TGG | + | chr2_4:59727954-59727973 | None:intergenic | 35.0% | |
| AATGACTTTATGCTGTTGTG+TGG | - | chr2_4:59727954-59727973 | Msa0338970:CDS | 35.0% | |
| GAAAATGTATGTCACCTAGA+TGG | + | chr2_4:59728211-59728230 | None:intergenic | 35.0% | |
| ! | CTGTTTTCGTCAACAGTTTA+AGG | - | chr2_4:59728410-59728429 | Msa0338970:intron | 35.0% |
| ! | TTTGATAACACCACAGCAAT+TGG | - | chr2_4:59728488-59728507 | Msa0338970:intron | 35.0% |
| ! | TTGATAACACCACAGCAATT+GGG | - | chr2_4:59728489-59728508 | Msa0338970:intron | 35.0% |
| AAACCATTTGCATCTGTTGA+TGG | + | chr2_4:59728818-59728837 | None:intergenic | 35.0% | |
| ! | GTATTGACAAATCATTTCGC+AGG | + | chr2_4:59728974-59728993 | None:intergenic | 35.0% |
| ! | TTAGTACTATTGGTTGTGGT+CGG | + | chr2_4:59728996-59729015 | None:intergenic | 35.0% |
| AGTAGCCAACACATGTTTAT+CGG | + | chr2_4:59729341-59729360 | None:intergenic | 35.0% | |
| CCCTAAAAAATTTCCACTGT+TGG | - | chr2_4:59729521-59729540 | Msa0338970:CDS | 35.0% | |
| !!! | GCCAACAGTGGAAATTTTTT+AGG | + | chr2_4:59729525-59729544 | None:intergenic | 35.0% |
| ATGTGTACTTCTTCAACCAT+AGG | + | chr2_4:59729807-59729826 | None:intergenic | 35.0% | |
| ATGCTTGACAAAAAAACAGC+AGG | - | chr2_4:59729825-59729844 | Msa0338970:CDS | 35.0% | |
| ATTTGGACTGCAATTCTCAT+TGG | + | chr2_4:59729853-59729872 | None:intergenic | 35.0% | |
| AGTCCAAATGAGAGAACTTA+TGG | - | chr2_4:59729864-59729883 | Msa0338970:CDS | 35.0% | |
| TTCAATGCCTTATCCATTCT+AGG | + | chr2_4:59729915-59729934 | None:intergenic | 35.0% | |
| GTAAATGAGTTAAATGAGGC+AGG | - | chr2_4:59730014-59730033 | Msa0338970:CDS | 35.0% | |
| ATGTGGAATGAGTTCAAGAA+TGG | - | chr2_4:59730070-59730089 | Msa0338970:CDS | 35.0% | |
| AAGAATGGATGGAACACTTA+TGG | - | chr2_4:59730085-59730104 | Msa0338970:CDS | 35.0% | |
| TCATGTCCACTATGTCTATA+TGG | + | chr2_4:59730119-59730138 | None:intergenic | 35.0% | |
| TGGATCTGTTTCATTGACAT+TGG | - | chr2_4:59730159-59730178 | Msa0338970:CDS | 35.0% | |
| CTTAGACATCTTGACTTTGT+AGG | - | chr2_4:59730211-59730230 | Msa0338970:CDS | 35.0% | |
| CATTTCTGACTCTGACCTAT+TGG | + | chr2_4:59727239-59727258 | None:intergenic | 40.0% | |
| CAATAGGTCAGAGTCAGAAA+TGG | - | chr2_4:59727237-59727256 | Msa0338970:CDS | 40.0% | |
| ATCATCACATCAAGACTTGG+TGG | - | chr2_4:59727480-59727499 | Msa0338970:intron | 40.0% | |
| CTAGCAGGACTCTTTGAATT+AGG | + | chr2_4:59727517-59727536 | None:intergenic | 40.0% | |
| AGTCCTGCTAGTACTAGTTA+TGG | - | chr2_4:59727526-59727545 | Msa0338970:intron | 40.0% | |
| ! | TGGGTTTTGCTCTCCAAAAT+TGG | - | chr2_4:59727636-59727655 | Msa0338970:intron | 40.0% |
| GAAACTGAGGTTGCTTCTAA+AGG | - | chr2_4:59727679-59727698 | Msa0338970:intron | 40.0% | |
| !! | CAATGTTTCCTAGTGCTGAT+TGG | - | chr2_4:59727728-59727747 | Msa0338970:intron | 40.0% |
| !! | ATGTTTCCTAGTGCTGATTG+GGG | - | chr2_4:59727730-59727749 | Msa0338970:intron | 40.0% |
| GTAGCTTAGGTGTTTCTTTG+CGG | - | chr2_4:59727761-59727780 | Msa0338970:CDS | 40.0% | |
| GCTTATGTTCATGCAAGAAG+AGG | - | chr2_4:59727810-59727829 | Msa0338970:intron | 40.0% | |
| AACCCCTTGAAGCCTATAAA+TGG | - | chr2_4:59728161-59728180 | Msa0338970:CDS | 40.0% | |
| ACCCCTTGAAGCCTATAAAT+GGG | - | chr2_4:59728162-59728181 | Msa0338970:CDS | 40.0% | |
| ACAACCTTTCCCCCATTTAT+AGG | + | chr2_4:59728176-59728195 | None:intergenic | 40.0% | |
| ! | GGGAAAGGTTGTCATTTGAA+AGG | - | chr2_4:59728184-59728203 | Msa0338970:CDS | 40.0% |
| GTCATTTGAAAGGTCCATCT+AGG | - | chr2_4:59728194-59728213 | Msa0338970:CDS | 40.0% | |
| AAATTGAGCTAGTCAAAGCC+TGG | + | chr2_4:59728471-59728490 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGACACTGTTTTGC+CGG | - | chr2_4:59728755-59728774 | Msa0338970:intron | 40.0% |
| TTTGCCGGGATATGTGTAAT+AGG | - | chr2_4:59728770-59728789 | Msa0338970:intron | 40.0% | |
| GTACCATCAACAGATGCAAA+TGG | - | chr2_4:59728812-59728831 | Msa0338970:intron | 40.0% | |
| TCATCCTTTGAATCAGTAGC+AGG | - | chr2_4:59728840-59728859 | Msa0338970:intron | 40.0% | |
| !! | AAGACCTGCTACTGATTCAA+AGG | + | chr2_4:59728847-59728866 | None:intergenic | 40.0% |
| TTCAAAGCCAGACTGATGTA+AGG | + | chr2_4:59728882-59728901 | None:intergenic | 40.0% | |
| TTCGCAGGACTTCACTTATA+TGG | + | chr2_4:59728959-59728978 | None:intergenic | 40.0% | |
| ! | AAACCTGATGGAACCTTTTC+AGG | + | chr2_4:59729083-59729102 | None:intergenic | 40.0% |
| TGTGGATCATGAAAACCTGA+TGG | + | chr2_4:59729095-59729114 | None:intergenic | 40.0% | |
| ATCCACAACAACAGCATGTT+TGG | - | chr2_4:59729108-59729127 | Msa0338970:intron | 40.0% | |
| ! | CATGTTTATCGGTGTCTGTA+GGG | + | chr2_4:59729330-59729349 | None:intergenic | 40.0% |
| ! | ACATGTTTATCGGTGTCTGT+AGG | + | chr2_4:59729331-59729350 | None:intergenic | 40.0% |
| AGACACCGATAAACATGTGT+TGG | - | chr2_4:59729333-59729352 | Msa0338970:CDS | 40.0% | |
| TTTATAGATCTGGCCAACAG+TGG | + | chr2_4:59729537-59729556 | None:intergenic | 40.0% | |
| GTGCCATAAGTTCTCTCATT+TGG | + | chr2_4:59729870-59729889 | None:intergenic | 40.0% | |
| ! | AGAACTTATGGCACTGAAGT+GGG | - | chr2_4:59729876-59729895 | Msa0338970:CDS | 40.0% |
| AGTTAAATGAGGCAGGACAA+TGG | - | chr2_4:59730021-59730040 | Msa0338970:CDS | 40.0% | |
| GGAATGAGTTCAAGAATGGA+TGG | - | chr2_4:59730074-59730093 | Msa0338970:CDS | 40.0% | |
| CATGATGTTGTGAGATCACT+TGG | - | chr2_4:59730134-59730153 | Msa0338970:CDS | 40.0% | |
| TGTTGTGAGATCACTTGGAT+TGG | - | chr2_4:59730139-59730158 | Msa0338970:CDS | 40.0% | |
| TTGACATTGGAACTTAGGCA+TGG | - | chr2_4:59730172-59730191 | Msa0338970:CDS | 40.0% | |
| TTGGCATGTACCTTGTAATG+TGG | - | chr2_4:59730241-59730260 | Msa0338970:CDS | 40.0% | |
| AGAGTCAAGACCACATTACA+AGG | + | chr2_4:59730254-59730273 | None:intergenic | 40.0% | |
| ! | TGTAATGTGGTCTTGACTCT+TGG | - | chr2_4:59730254-59730273 | Msa0338970:CDS | 40.0% |
| ! | GTAATGTGGTCTTGACTCTT+GGG | - | chr2_4:59730255-59730274 | Msa0338970:CDS | 40.0% |
| !! | TCACATCAAGACTTGGTGGT+TGG | - | chr2_4:59727484-59727503 | Msa0338970:intron | 45.0% |
| TATGGAAATCTGGGTCCACT+TGG | - | chr2_4:59727544-59727563 | Msa0338970:intron | 45.0% | |
| TAACCAGTAAAAGGGCCAAG+TGG | + | chr2_4:59727562-59727581 | None:intergenic | 45.0% | |
| !! | TGTTTCCTAGTGCTGATTGG+GGG | - | chr2_4:59727731-59727750 | Msa0338970:intron | 45.0% |
| ! | TCTAGAGACTAGAGAGCATG+AGG | - | chr2_4:59728051-59728070 | Msa0338970:CDS | 45.0% |
| CCCCATTTATAGGCTTCAAG+GGG | + | chr2_4:59728166-59728185 | None:intergenic | 45.0% | |
| CCCCTTGAAGCCTATAAATG+GGG | - | chr2_4:59728163-59728182 | Msa0338970:CDS | 45.0% | |
| CCCCCATTTATAGGCTTCAA+GGG | + | chr2_4:59728167-59728186 | None:intergenic | 45.0% | |
| CCCTTGAAGCCTATAAATGG+GGG | - | chr2_4:59728164-59728183 | Msa0338970:CDS | 45.0% | |
| TCCCCCATTTATAGGCTTCA+AGG | + | chr2_4:59728168-59728187 | None:intergenic | 45.0% | |
| GAAGCCTATAAATGGGGGAA+AGG | - | chr2_4:59728169-59728188 | Msa0338970:CDS | 45.0% | |
| ACCATGAATTACTCGACGAG+GGG | + | chr2_4:59728385-59728404 | None:intergenic | 45.0% | |
| CACCATGAATTACTCGACGA+GGG | + | chr2_4:59728386-59728405 | None:intergenic | 45.0% | |
| TCACCATGAATTACTCGACG+AGG | + | chr2_4:59728387-59728406 | None:intergenic | 45.0% | |
| AATTTGTACCATGGACCTCC+AGG | - | chr2_4:59728450-59728469 | Msa0338970:intron | 45.0% | |
| CAGTATAGACCCAATTGCTG+TGG | + | chr2_4:59728501-59728520 | None:intergenic | 45.0% | |
| TTTGGGCTCGAATTCCATCT+TGG | + | chr2_4:59728529-59728548 | None:intergenic | 45.0% | |
| !! | GGTTTTGACACTGTTTTGCC+GGG | - | chr2_4:59728756-59728775 | Msa0338970:intron | 45.0% |
| AGCTACTCCTTACATCAGTC+TGG | - | chr2_4:59728872-59728891 | Msa0338970:intron | 45.0% | |
| ! | GGCTTTGATCCATGCATCTT+AGG | + | chr2_4:59729046-59729065 | None:intergenic | 45.0% |
| AGACCTGAAAAGGTTCCATC+AGG | - | chr2_4:59729077-59729096 | Msa0338970:intron | 45.0% | |
| CTCCAAACATGCTGTTGTTG+TGG | + | chr2_4:59729113-59729132 | None:intergenic | 45.0% | |
| CACAACAACAGCATGTTTGG+AGG | - | chr2_4:59729111-59729130 | Msa0338970:intron | 45.0% | |
| GAGACAGAGAGACAAACGTA+CGG | + | chr2_4:59729206-59729225 | None:intergenic | 45.0% | |
| !! | CATGTGTTGGCTACTCAAAC+TGG | - | chr2_4:59729346-59729365 | Msa0338970:CDS | 45.0% |
| ! | GAGAACTTATGGCACTGAAG+TGG | - | chr2_4:59729875-59729894 | Msa0338970:CDS | 45.0% |
| ATGCCTTATCCATTCTAGGC+TGG | + | chr2_4:59729911-59729930 | None:intergenic | 45.0% | |
| GACAATGGAGTAGAGAGAAG+AGG | - | chr2_4:59730036-59730055 | Msa0338970:CDS | 45.0% | |
| ! | GAACTTAGGCATGGTGTTGA+AGG | - | chr2_4:59730181-59730200 | Msa0338970:CDS | 45.0% |
| !!! | AGTTTAATTATTATATTTTT+TGG | - | chr2_4:59729283-59729302 | Msa0338970:intron | 5.0% |
| GTGCAGCTTCAGAACCAAGT+AGG | - | chr2_4:59726978-59726997 | Msa0338970:CDS | 50.0% | |
| !! | TCAGTGAGTTGATGTGGAGC+AGG | + | chr2_4:59727091-59727110 | None:intergenic | 50.0% |
| TGGGGGAACAGAAGTAGCTT+AGG | - | chr2_4:59727748-59727767 | Msa0338970:intron | 50.0% | |
| ! | GCTGTTGTGTGGACTGCAAA+AGG | - | chr2_4:59727965-59727984 | Msa0338970:CDS | 50.0% |
| TCCCCTCGTCGAGTAATTCA+TGG | - | chr2_4:59728381-59728400 | Msa0338970:intron | 50.0% | |
| TTGAGCTAGTCAAAGCCTGG+AGG | + | chr2_4:59728468-59728487 | None:intergenic | 50.0% | |
| TGTGGCAAGCCTAAGATGCA+TGG | - | chr2_4:59729034-59729053 | Msa0338970:intron | 50.0% | |
| ! | CAGTGGCGATTCTAAGAGCT+TGG | - | chr2_4:59729159-59729178 | Msa0338970:intron | 50.0% |
| !! | AACTGGTCTTTCGCGAAACC+AGG | - | chr2_4:59729363-59729382 | Msa0338970:CDS | 50.0% |
| CAAAGGAGTAGGAACCTACC+TGG | + | chr2_4:59729384-59729403 | None:intergenic | 50.0% | |
| TTAATGCTCGAGTTCGCGTG+TGG | - | chr2_4:59729778-59729797 | Msa0338970:CDS | 50.0% | |
| TTCATGCAGCCAGCCTAGAA+TGG | - | chr2_4:59729899-59729918 | Msa0338970:CDS | 50.0% | |
| CAGCCAGCCTAGAATGGATA+AGG | - | chr2_4:59729905-59729924 | Msa0338970:CDS | 50.0% | |
| ! | GGTCCACTTGGCCCTTTTAC+TGG | - | chr2_4:59727556-59727575 | Msa0338970:intron | 55.0% |
| CTGTTCCCCCAATCAGCACT+AGG | + | chr2_4:59727739-59727758 | None:intergenic | 55.0% | |
| AGTCAAAGCCTGGAGGTCCA+TGG | + | chr2_4:59728461-59728480 | None:intergenic | 55.0% | |
| CATGTTTGGAGGCCTCAGAG+AGG | - | chr2_4:59729122-59729141 | Msa0338970:intron | 55.0% | |
| AGAATCGCCACTGCACGTTC+CGG | + | chr2_4:59729152-59729171 | None:intergenic | 55.0% | |
| GGTCTTTCGCGAAACCAGGT+AGG | - | chr2_4:59729367-59729386 | Msa0338970:CDS | 55.0% | |
| AGTTCGCGTGTGGAAGCCTA+TGG | - | chr2_4:59729788-59729807 | Msa0338970:CDS | 55.0% | |
| GAGGCCTCAGAGAGGCTTTC+CGG | - | chr2_4:59729130-59729149 | Msa0338970:intron | 60.0% | |
| CGTTCCGGAAAGCCTCTCTG+AGG | + | chr2_4:59729137-59729156 | None:intergenic | 60.0% | |
| AGGCTTTCCGGAACGTGCAG+TGG | - | chr2_4:59729142-59729161 | Msa0338970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 59726845 | 59730290 | 59726845 | ID=Msa0338970;Name=Msa0338970 |
| chr2_4 | mRNA | 59726845 | 59730290 | 59726845 | ID=Msa0338970-mRNA-1;Parent=Msa0338970;Name=Msa0338970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.5|1|1|1|4|115|624 |
| chr2_4 | exon | 59726845 | 59727373 | 59726845 | ID=Msa0338970-mRNA-1:exon:18562;Parent=Msa0338970-mRNA-1 |
| chr2_4 | exon | 59727751 | 59727811 | 59727751 | ID=Msa0338970-mRNA-1:exon:18561;Parent=Msa0338970-mRNA-1 |
| chr2_4 | exon | 59727931 | 59728343 | 59727931 | ID=Msa0338970-mRNA-1:exon:18560;Parent=Msa0338970-mRNA-1 |
| chr2_4 | exon | 59729304 | 59730290 | 59729304 | ID=Msa0338970-mRNA-1:exon:18559;Parent=Msa0338970-mRNA-1 |
| chr2_4 | CDS | 59729304 | 59730290 | 59729304 | ID=Msa0338970-mRNA-1:cds;Parent=Msa0338970-mRNA-1 |
| chr2_4 | CDS | 59727931 | 59728343 | 59727931 | ID=Msa0338970-mRNA-1:cds;Parent=Msa0338970-mRNA-1 |
| chr2_4 | CDS | 59727751 | 59727811 | 59727751 | ID=Msa0338970-mRNA-1:cds;Parent=Msa0338970-mRNA-1 |
| chr2_4 | CDS | 59726960 | 59727373 | 59726960 | ID=Msa0338970-mRNA-1:cds;Parent=Msa0338970-mRNA-1 |
| chr2_4 | three_prime_UTR | 59726845 | 59726959 | 59726845 | ID=Msa0338970-mRNA-1:three_prime_utr;Parent=Msa0338970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
