Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301580 | KEH39362.1 | 94.391 | 624 | 27 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301580 | sp|Q9SJJ3|BLH8_ARATH | 50.338 | 296 | 106 | 6 | 238 | 526 | 251 | 512 | 2.24e-80 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0301580 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055450 | Msa0301580 | 0.811309 | 7.467176e-51 | -8.615850e-47 |
| Msa0124130 | Msa0301580 | 0.802663 | 5.042190e-49 | -8.615850e-47 |
| Msa0197100 | Msa0301580 | 0.804193 | 2.430069e-49 | -8.615850e-47 |
| Msa0222250 | Msa0301580 | 0.832972 | 6.966152e-56 | -8.615850e-47 |
| Msa0239030 | Msa0301580 | 0.807526 | 4.841845e-50 | -8.615850e-47 |
| Msa0252770 | Msa0301580 | 0.803928 | 2.758843e-49 | -8.615850e-47 |
| Msa0301580 | Msa0316680 | 0.807683 | 4.483909e-50 | -8.615850e-47 |
| Msa0301580 | Msa0338970 | 0.848302 | 6.682694e-60 | -8.615850e-47 |
| Msa0301580 | Msa0451400 | 0.809257 | 2.069199e-50 | -8.615850e-47 |
| Msa0301580 | Msa0782360 | 0.812516 | 4.077271e-51 | -8.615850e-47 |
| Msa0301580 | Msa0860280 | 0.805715 | 1.167918e-49 | -8.615850e-47 |
| Msa0301580 | Msa1125810 | 0.802874 | 4.561615e-49 | -8.615850e-47 |
| Msa0301580 | Msa1228190 | 0.836241 | 1.049895e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301580 | MtrunA17_Chr2g0327021 | 94.391 | 624 | 27 | 3 | 1 | 624 | 1 | 616 | 0.0 | 1165 |
| Msa0301580 | MtrunA17_Chr4g0028701 | 49.083 | 436 | 164 | 12 | 222 | 620 | 218 | 632 | 2.64e-116 | 361 |
| Msa0301580 | MtrunA17_Chr7g0240371 | 47.122 | 278 | 123 | 5 | 236 | 513 | 124 | 377 | 2.02e-76 | 252 |
| Msa0301580 | MtrunA17_Chr4g0008591 | 47.368 | 285 | 117 | 4 | 242 | 521 | 189 | 445 | 2.47e-74 | 249 |
| Msa0301580 | MtrunA17_Chr8g0373801 | 43.060 | 281 | 136 | 5 | 245 | 515 | 384 | 650 | 1.59e-64 | 227 |
| Msa0301580 | MtrunA17_Chr1g0177751 | 44.061 | 261 | 127 | 4 | 248 | 502 | 160 | 407 | 1.34e-60 | 213 |
| Msa0301580 | MtrunA17_Chr5g0403251 | 41.455 | 275 | 137 | 7 | 245 | 508 | 330 | 591 | 4.39e-60 | 214 |
| Msa0301580 | MtrunA17_Chr8g0387321 | 45.211 | 261 | 125 | 5 | 249 | 504 | 185 | 432 | 5.79e-60 | 211 |
| Msa0301580 | MtrunA17_Chr7g0267481 | 47.788 | 226 | 97 | 4 | 303 | 525 | 232 | 439 | 1.57e-59 | 211 |
| Msa0301580 | MtrunA17_Chr3g0141941 | 40.625 | 288 | 138 | 5 | 245 | 521 | 158 | 423 | 2.59e-59 | 207 |
| Msa0301580 | MtrunA17_Chr1g0155681 | 43.662 | 284 | 123 | 7 | 253 | 522 | 174 | 434 | 2.81e-59 | 209 |
| Msa0301580 | MtrunA17_Chr4g0025521 | 41.772 | 316 | 152 | 8 | 249 | 555 | 217 | 509 | 4.65e-59 | 210 |
| Msa0301580 | MtrunA17_Chr3g0141931 | 38.889 | 306 | 143 | 8 | 231 | 523 | 154 | 428 | 1.24e-55 | 195 |
| Msa0301580 | MtrunA17_Chr1g0151681 | 35.577 | 208 | 114 | 4 | 313 | 519 | 315 | 503 | 3.53e-34 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301580 | AT2G27990.1 | 50.338 | 296 | 106 | 6 | 238 | 526 | 251 | 512 | 2.28e-81 | 268 |
| Msa0301580 | AT5G02030.1 | 46.974 | 347 | 138 | 11 | 185 | 511 | 98 | 418 | 8.47e-73 | 245 |
| Msa0301580 | AT4G34610.2 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.41e-66 | 227 |
| Msa0301580 | AT4G34610.4 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.41e-66 | 227 |
| Msa0301580 | AT4G34610.3 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.41e-66 | 227 |
| Msa0301580 | AT4G34610.1 | 44.631 | 298 | 137 | 8 | 250 | 543 | 141 | 414 | 1.41e-66 | 227 |
| Msa0301580 | AT1G75410.1 | 39.306 | 346 | 192 | 6 | 168 | 508 | 81 | 413 | 1.37e-65 | 224 |
| Msa0301580 | AT1G75410.2 | 39.306 | 346 | 192 | 6 | 168 | 508 | 81 | 413 | 1.37e-65 | 224 |
| Msa0301580 | AT4G36870.2 | 45.489 | 266 | 127 | 5 | 249 | 508 | 312 | 565 | 1.34e-64 | 226 |
| Msa0301580 | AT4G36870.1 | 45.489 | 266 | 127 | 5 | 249 | 508 | 312 | 565 | 1.34e-64 | 226 |
| Msa0301580 | AT2G23760.2 | 43.542 | 271 | 134 | 5 | 245 | 508 | 233 | 491 | 1.75e-61 | 216 |
| Msa0301580 | AT2G23760.1 | 43.542 | 271 | 134 | 5 | 245 | 508 | 233 | 491 | 1.75e-61 | 216 |
| Msa0301580 | AT2G23760.3 | 43.542 | 271 | 134 | 5 | 245 | 508 | 233 | 491 | 1.75e-61 | 216 |
| Msa0301580 | AT2G16400.1 | 40.625 | 288 | 146 | 7 | 244 | 530 | 109 | 372 | 2.67e-61 | 211 |
| Msa0301580 | AT1G19700.1 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 8.79e-61 | 211 |
| Msa0301580 | AT1G19700.3 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 8.79e-61 | 211 |
| Msa0301580 | AT1G19700.5 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 8.79e-61 | 211 |
| Msa0301580 | AT1G19700.4 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 8.79e-61 | 211 |
| Msa0301580 | AT1G19700.2 | 42.545 | 275 | 130 | 4 | 245 | 508 | 161 | 418 | 8.79e-61 | 211 |
| Msa0301580 | AT2G35940.3 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.60e-59 | 211 |
| Msa0301580 | AT2G35940.1 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.60e-59 | 211 |
| Msa0301580 | AT2G35940.2 | 44.403 | 268 | 123 | 4 | 250 | 502 | 190 | 446 | 1.60e-59 | 211 |
| Msa0301580 | AT2G27220.1 | 37.618 | 319 | 146 | 7 | 220 | 538 | 56 | 321 | 7.20e-53 | 187 |
| Msa0301580 | AT2G27220.3 | 37.618 | 319 | 146 | 7 | 220 | 538 | 56 | 321 | 7.20e-53 | 187 |
| Msa0301580 | AT5G41410.1 | 38.971 | 272 | 146 | 4 | 250 | 508 | 194 | 458 | 4.51e-52 | 189 |
| Msa0301580 | AT2G23760.4 | 36.533 | 323 | 134 | 6 | 245 | 508 | 233 | 543 | 5.42e-52 | 190 |
| Msa0301580 | AT1G75410.3 | 37.117 | 326 | 187 | 6 | 168 | 488 | 81 | 393 | 1.02e-51 | 184 |
| Msa0301580 | AT4G36870.4 | 42.510 | 247 | 124 | 5 | 249 | 489 | 312 | 546 | 2.30e-51 | 186 |
| Msa0301580 | AT1G75430.1 | 46.875 | 192 | 84 | 4 | 322 | 508 | 91 | 269 | 9.63e-51 | 177 |
| Msa0301580 | AT4G36870.3 | 42.041 | 245 | 124 | 5 | 249 | 487 | 312 | 544 | 5.22e-50 | 182 |
| Msa0301580 | AT2G27990.2 | 45.726 | 234 | 89 | 5 | 238 | 467 | 251 | 450 | 7.05e-50 | 180 |
| Msa0301580 | AT2G27220.2 | 35.905 | 337 | 145 | 8 | 220 | 538 | 56 | 339 | 2.93e-49 | 178 |
| Msa0301580 | AT4G32980.1 | 31.206 | 282 | 169 | 6 | 245 | 524 | 197 | 455 | 3.54e-37 | 145 |
| Msa0301580 | AT4G32980.2 | 31.206 | 282 | 169 | 6 | 245 | 524 | 197 | 455 | 3.54e-37 | 145 |
| Msa0301580 | AT1G75430.2 | 39.474 | 152 | 74 | 4 | 321 | 467 | 90 | 228 | 2.15e-25 | 107 |
Find 120 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTGAACTGAGTGATTT+TGG | 0.076755 | 2_3:+57930954 | Msa0301580:CDS |
| TCACATGTTGTCACCAATTT+TGG | 0.122717 | 2_3:-57931557 | None:intergenic |
| TAAGAGTTCAAGATTCTTAA+AGG | 0.151069 | 2_3:+57931502 | Msa0301580:CDS |
| TGACTTTGTAGGATGATTAT+TGG | 0.203952 | 2_3:+57934106 | Msa0301580:three_prime_UTR |
| AATTCTCTTTCTTATGTATA+TGG | 0.222196 | 2_3:+57931047 | Msa0301580:CDS |
| TAGAGAGAAGAGGTATAAAT+TGG | 0.239051 | 2_3:+57933930 | Msa0301580:CDS |
| AATGATAAGCTTTGTGGTTT+TGG | 0.247497 | 2_3:-57931233 | None:intergenic |
| GAGGCCTCAGAGAGGCTTTC+CGG | 0.248276 | 2_3:+57933046 | Msa0301580:CDS |
| CTAGCAGGACTCTTTGAATT+AGG | 0.255997 | 2_3:-57931422 | None:intergenic |
| CTTAGACATCTTGACTTTGT+AGG | 0.257836 | 2_3:+57934095 | Msa0301580:three_prime_UTR |
| TTCGCAGGACTTCACTTATA+TGG | 0.258775 | 2_3:-57932872 | None:intergenic |
| TTCAATGCCTTATCCATTCT+AGG | 0.259330 | 2_3:-57933796 | None:intergenic |
| ATAGTAGCATAACCAGTAAA+AGG | 0.261980 | 2_3:-57931476 | None:intergenic |
| GCTTTATTCTGCTGATAATC+TGG | 0.271358 | 2_3:-57931692 | None:intergenic |
| GTTGCACAAAATTTGTTAGA+TGG | 0.282371 | 2_3:+57931524 | Msa0301580:CDS |
| GTCAACTAGTTTAGAACTAT+TGG | 0.285954 | 2_3:-57932919 | None:intergenic |
| GCTTATAATTTGCATTTCTA+AGG | 0.287522 | 2_3:-57930779 | None:intergenic |
| GTGCCATAAGTTCTCTCATT+TGG | 0.291427 | 2_3:-57933751 | None:intergenic |
| GATTTGAAATAGCATTATTT+AGG | 0.301108 | 2_3:-57932842 | None:intergenic |
| GATTAATGCAGGTATCAAAT+TGG | 0.308082 | 2_3:+57933635 | Msa0301580:intron |
| TAGTACTAGTTATGGAAATC+TGG | 0.321419 | 2_3:+57931442 | Msa0301580:CDS |
| AAGAATGGATGGAACACTTA+TGG | 0.325450 | 2_3:+57933969 | Msa0301580:CDS |
| CATTTCTGACTCTGACCTAT+TGG | 0.330237 | 2_3:-57931144 | None:intergenic |
| AAACCATTTGCATCTGTTGA+TGG | 0.333209 | 2_3:-57932731 | None:intergenic |
| AGTAGCCAACACATGTTTAT+CGG | 0.338043 | 2_3:-57933254 | None:intergenic |
| AATGTTTCCTAGTGCTGATT+GGG | 0.352550 | 2_3:+57931637 | Msa0301580:CDS |
| GGCTTTGATCCATGCATCTT+AGG | 0.352803 | 2_3:-57932959 | None:intergenic |
| TATGGTGGTGAAAAGCAATT+AGG | 0.353455 | 2_3:+57931065 | Msa0301580:CDS |
| TCATGTCCACTATGTCTATA+TGG | 0.356435 | 2_3:-57934000 | None:intergenic |
| ATCCACAACAACGGCATGTT+TGG | 0.357087 | 2_3:+57933024 | Msa0301580:CDS |
| CAATGTTTCCTAGTGCTGAT+TGG | 0.357408 | 2_3:+57931636 | Msa0301580:CDS |
| ATTTCTGTTGATGAATAAAC+TGG | 0.361530 | 2_3:-57930810 | None:intergenic |
| ATCAACTCACTGATCAATAT+TGG | 0.368498 | 2_3:+57931006 | Msa0301580:CDS |
| TGTAATGTGGTCTTGACTCT+TGG | 0.371143 | 2_3:+57934138 | Msa0301580:three_prime_UTR |
| GAATCAGAATAATTCTTTGC+AGG | 0.380802 | 2_3:+57931100 | Msa0301580:CDS |
| AGAATCGCCACTGCACGTTC+CGG | 0.392563 | 2_3:-57933065 | None:intergenic |
| CATGTGTTGGCTACTCAAAC+TGG | 0.395238 | 2_3:+57933262 | Msa0301580:CDS |
| AGTCCAAATGAGAGAACTTA+TGG | 0.398547 | 2_3:+57933748 | Msa0301580:CDS |
| ATTTGGACTGCAATTCTCAT+TGG | 0.400633 | 2_3:-57933734 | None:intergenic |
| GTAATGTGGTCTTGACTCTT+GGG | 0.406662 | 2_3:+57934139 | Msa0301580:three_prime_UTR |
| TTTCATTGACATTGGAACTT+AGG | 0.407702 | 2_3:+57934051 | Msa0301580:exon |
| AGTCCTGCTAGTACTAGTTA+TGG | 0.414886 | 2_3:+57931434 | Msa0301580:CDS |
| CAAATTCAATGTATGGAACT+TGG | 0.416249 | 2_3:+57933850 | Msa0301580:CDS |
| TCCACAATCTCTAGAAATGA+TGG | 0.429326 | 2_3:-57931363 | None:intergenic |
| TGTTGCATCATTAACCTACT+TGG | 0.429908 | 2_3:-57930900 | None:intergenic |
| TGAAAATCAAATTCAATGTA+TGG | 0.431807 | 2_3:+57933843 | Msa0301580:CDS |
| TTGCACAAAATTTGTTAGAT+GGG | 0.442823 | 2_3:+57931525 | Msa0301580:CDS |
| ACAAAAGAATAGACCTGAAA+AGG | 0.450106 | 2_3:+57932983 | Msa0301580:CDS |
| ACTCTTGGGCATTGAAATGA+AGG | 0.451673 | 2_3:+57934153 | Msa0301580:three_prime_UTR |
| CCTAGTTCTTGATACTCAAA+AGG | 0.452958 | 2_3:-57930864 | None:intergenic |
| CATGATGTTGTGAGATCACT+TGG | 0.453466 | 2_3:+57934018 | Msa0301580:CDS |
| GAAACTGAGGTTGCTTCTAA+AGG | 0.458889 | 2_3:+57931587 | Msa0301580:CDS |
| TCCATCATTTCTAGAGATTG+TGG | 0.465297 | 2_3:+57931362 | Msa0301580:CDS |
| AGCTACTCCTTACATCAGTC+TGG | 0.473021 | 2_3:+57932788 | Msa0301580:CDS |
| TCATCCTTTGAATCAGTAGC+AGG | 0.475962 | 2_3:+57932756 | Msa0301580:CDS |
| ATGCCTTATCCATTCTAGGC+TGG | 0.476270 | 2_3:-57933792 | None:intergenic |
| AAACTGAGGTTGCTTCTAAA+GGG | 0.476654 | 2_3:+57931588 | Msa0301580:CDS |
| TGGATCTGTTTCATTGACAT+TGG | 0.478654 | 2_3:+57934043 | Msa0301580:exon |
| CAGCCAGCCTAGAATGGATA+AGG | 0.478775 | 2_3:+57933789 | Msa0301580:CDS |
| GAGAACTTATGGCACTGAAG+TGG | 0.480355 | 2_3:+57933759 | Msa0301580:CDS |
| AGACCTGAAAAGGTTCCATC+AGG | 0.481595 | 2_3:+57932993 | Msa0301580:CDS |
| GTAGCTTAGGTGTTTCTTTG+CGG | 0.484731 | 2_3:+57931669 | Msa0301580:CDS |
| CAATAGGTCAGAGTCAGAAA+TGG | 0.486499 | 2_3:+57931145 | Msa0301580:CDS |
| AGTGATAATGATAAGCTTTG+TGG | 0.494435 | 2_3:-57931239 | None:intergenic |
| TTCATGCAGCCAGCCTAGAA+TGG | 0.494640 | 2_3:+57933783 | Msa0301580:CDS |
| TCAAGTCTATCACTTCCAAT+AGG | 0.496873 | 2_3:+57931129 | Msa0301580:CDS |
| AACTGGTCTTTCGCGAAACC+AGG | 0.498308 | 2_3:+57933279 | Msa0301580:CDS |
| CACAACAACGGCATGTTTGG+AGG | 0.503395 | 2_3:+57933027 | Msa0301580:CDS |
| CATGTTTATCGGTGTCTGTA+GGG | 0.506317 | 2_3:-57933243 | None:intergenic |
| GTAAATGAGTTAAATGAGGC+AGG | 0.508118 | 2_3:+57933898 | Msa0301580:CDS |
| TAGTAGCATAACCAGTAAAA+GGG | 0.510354 | 2_3:-57931475 | None:intergenic |
| AGTTCGCGTGTGGAAGCCTA+TGG | 0.514217 | 2_3:+57933672 | Msa0301580:CDS |
| GAACTTAGGCATGGTGTTGA+AGG | 0.518287 | 2_3:+57934065 | Msa0301580:three_prime_UTR |
| AGTACTAGTTATGGAAATCT+GGG | 0.524187 | 2_3:+57931443 | Msa0301580:CDS |
| CAGTGGCGATTCTAAGAGCT+TGG | 0.530709 | 2_3:+57933075 | Msa0301580:CDS |
| ACATGTTTATCGGTGTCTGT+AGG | 0.537212 | 2_3:-57933244 | None:intergenic |
| AGAGTCAAGACCACATTACA+AGG | 0.537714 | 2_3:-57934135 | None:intergenic |
| ATGTGTACTTCTTCAACCAT+AGG | 0.539006 | 2_3:-57933688 | None:intergenic |
| AGAACTTATGGCACTGAAGT+GGG | 0.539197 | 2_3:+57933760 | Msa0301580:CDS |
| TGTTGTGAGATCACTTGGAT+TGG | 0.539982 | 2_3:+57934023 | Msa0301580:CDS |
| TCACATCAAGACTTGGTGGT+TGG | 0.544042 | 2_3:+57931392 | Msa0301580:CDS |
| ATGTGGAATGAGTTCAAGAA+TGG | 0.547007 | 2_3:+57933954 | Msa0301580:CDS |
| AAGACCTGCTACTGATTCAA+AGG | 0.547681 | 2_3:-57932760 | None:intergenic |
| TAGTTTAGAACTATTGGTTG+TGG | 0.549653 | 2_3:-57932913 | None:intergenic |
| TTCAAAGCCAGACTGATGTA+AGG | 0.549663 | 2_3:-57932795 | None:intergenic |
| TCTCTTTCTTATGTATATGG+TGG | 0.551473 | 2_3:+57931050 | Msa0301580:CDS |
| TATGGAAATCTGGGTCCACT+TGG | 0.554507 | 2_3:+57931452 | Msa0301580:CDS |
| GTATTGACAAATCATTTCGC+AGG | 0.555399 | 2_3:-57932887 | None:intergenic |
| CTCCAAACATGCCGTTGTTG+TGG | 0.556913 | 2_3:-57933026 | None:intergenic |
| AAATCACTCAGTTCAGAATG+AGG | 0.558152 | 2_3:-57930951 | None:intergenic |
| GTACCATCAACAGATGCAAA+TGG | 0.563901 | 2_3:+57932728 | Msa0301580:CDS |
| AAGAGGTATAAATTGGAATG+TGG | 0.564061 | 2_3:+57933937 | Msa0301580:CDS |
| TTTCCATAACTAGTACTAGC+AGG | 0.567280 | 2_3:-57931437 | None:intergenic |
| TTAGAACTATTGGTTGTGGT+CGG | 0.571655 | 2_3:-57932909 | None:intergenic |
| AGGCTTTCCGGAACGTGCAG+TGG | 0.573018 | 2_3:+57933058 | Msa0301580:CDS |
| ATCATCACATCAAGACTTGG+TGG | 0.576817 | 2_3:+57931388 | Msa0301580:CDS |
| GCTTATGTTCATGCAAGAAG+AGG | 0.580890 | 2_3:+57931718 | Msa0301580:CDS |
| ATGTTTCCTAGTGCTGATTG+GGG | 0.585973 | 2_3:+57931638 | Msa0301580:CDS |
| AGACACCGATAAACATGTGT+TGG | 0.590173 | 2_3:+57933249 | Msa0301580:CDS |
| AGTTAAATGAGGCAGGACAA+TGG | 0.596972 | 2_3:+57933905 | Msa0301580:CDS |
| TGTGGCAAGCCTAAGATGCA+TGG | 0.598137 | 2_3:+57932950 | Msa0301580:CDS |
| AGAAGTAAATGAGTTAAATG+AGG | 0.599304 | 2_3:+57933894 | Msa0301580:CDS |
| TTGACATTGGAACTTAGGCA+TGG | 0.600463 | 2_3:+57934056 | Msa0301580:exon |
| CTTATGCATCATAATAGTCA+AGG | 0.601239 | 2_3:+57931173 | Msa0301580:CDS |
| TTAATGCTCGAGTTCGCGTG+TGG | 0.602257 | 2_3:+57933662 | Msa0301580:CDS |
| GGAATGAGTTCAAGAATGGA+TGG | 0.604592 | 2_3:+57933958 | Msa0301580:CDS |
| TAATAATATTACACAAAACA+AGG | 0.606372 | 2_3:+57931268 | Msa0301580:CDS |
| ACTAGTTGACACTAATAATG+TGG | 0.612366 | 2_3:+57932932 | Msa0301580:CDS |
| TATTGATCAGTGAGTTGATG+TGG | 0.613925 | 2_3:-57931002 | None:intergenic |
| AAAATCATCACATCAAGACT+TGG | 0.614582 | 2_3:+57931385 | Msa0301580:CDS |
| GACAATGGAGTAGAGAGAAG+AGG | 0.622784 | 2_3:+57933920 | Msa0301580:CDS |
| ATGTGATGTTTCTGAAACTG+AGG | 0.624579 | 2_3:+57931574 | Msa0301580:CDS |
| TGTGGATCATGAAAACCTGA+TGG | 0.624654 | 2_3:-57933008 | None:intergenic |
| GTGCAGCTTCAGAACCAAGT+AGG | 0.625967 | 2_3:+57930886 | Msa0301580:CDS |
| CAATCTCTAGAAATGATGGA+AGG | 0.631862 | 2_3:-57931359 | None:intergenic |
| TTGGCATGTACCTTGTAATG+TGG | 0.647194 | 2_3:+57934125 | Msa0301580:three_prime_UTR |
| TAACCAGTAAAAGGGCCAAG+TGG | 0.664374 | 2_3:-57931467 | None:intergenic |
| CGTTCCGGAAAGCCTCTCTG+AGG | 0.668109 | 2_3:-57933050 | None:intergenic |
| TGTTTCCTAGTGCTGATTGG+GGG | 0.672245 | 2_3:+57931639 | Msa0301580:CDS |
| CATGTTTGGAGGCCTCAGAG+AGG | 0.723416 | 2_3:+57933038 | Msa0301580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAAACAAAAATTTAAA+AGG | - | chr2_3:57933505-57933524 | None:intergenic | 10.0% |
| !! | TAAATAATTAAGTGTATTAT+AGG | - | chr2_3:57933592-57933611 | None:intergenic | 10.0% |
| !! | TAATAATATTACACAAAACA+AGG | + | chr2_3:57931268-57931287 | Msa0301580:CDS | 15.0% |
| !! | AATTGCAAAGATAAATAAAT+TGG | + | chr2_3:57931924-57931943 | Msa0301580:intron | 15.0% |
| !! | TATCTCTACAAATAATTATA+TGG | + | chr2_3:57932197-57932216 | Msa0301580:intron | 15.0% |
| !! | AATATAAAAAATTTGTACCA+TGG | + | chr2_3:57932350-57932369 | Msa0301580:intron | 15.0% |
| !!! | TAAAGTCAAAGTAATTTTAT+TGG | + | chr2_3:57932567-57932586 | Msa0301580:intron | 15.0% |
| !! | ATCCATAAAAAAAAATCATA+AGG | + | chr2_3:57933463-57933482 | Msa0301580:intron | 15.0% |
| !! | AAATTTAAAAGGAATGAAAT+TGG | - | chr2_3:57933494-57933513 | None:intergenic | 15.0% |
| !! | CACTTAATTATTTATTATCT+TGG | + | chr2_3:57933598-57933617 | Msa0301580:intron | 15.0% |
| !! | AATTCTCTTTCTTATGTATA+TGG | + | chr2_3:57931047-57931066 | Msa0301580:CDS | 20.0% |
| !!! | ATTTTTCTTCATATCACAAT+TGG | + | chr2_3:57932143-57932162 | Msa0301580:intron | 20.0% |
| !! | ATAAAATTTGTATACACTGT+TGG | + | chr2_3:57932242-57932261 | Msa0301580:intron | 20.0% |
| !! | CTCAAGAATCAAATAAAATT+AGG | - | chr2_3:57932599-57932618 | None:intergenic | 20.0% |
| !!! | TTTTAATTGTCTTCAAAGAT+TGG | + | chr2_3:57932649-57932668 | Msa0301580:intron | 20.0% |
| !!! | GATTTGAAATAGCATTATTT+AGG | - | chr2_3:57932845-57932864 | None:intergenic | 20.0% |
| !!! | TTTCTATGTGTTATTTGTTA+AGG | + | chr2_3:57933167-57933186 | Msa0301580:intron | 20.0% |
| !! | TTTCAATCAAACAAATCAAA+AGG | - | chr2_3:57933339-57933358 | None:intergenic | 20.0% |
| !!! | ATGATTTTTTTTTATGGATC+TGG | - | chr2_3:57933462-57933481 | None:intergenic | 20.0% |
| !!! | CACCTTATGATTTTTTTTTA+TGG | - | chr2_3:57933468-57933487 | None:intergenic | 20.0% |
| !!! | TCAATAGATTTTGTTACTTT+TGG | + | chr2_3:57933547-57933566 | Msa0301580:intron | 20.0% |
| !! | TTAAGTGTATTATAGGAAAA+CGG | - | chr2_3:57933585-57933604 | None:intergenic | 20.0% |
| !!! | ATACATTGAATTTGATTTTC+AGG | - | chr2_3:57933844-57933863 | None:intergenic | 20.0% |
| !! | TGAAAATCAAATTCAATGTA+TGG | + | chr2_3:57933843-57933862 | Msa0301580:CDS | 20.0% |
| !! | GCTTATAATTTGCATTTCTA+AGG | - | chr2_3:57930782-57930801 | None:intergenic | 25.0% |
| !! | ATTTCTGTTGATGAATAAAC+TGG | - | chr2_3:57930813-57930832 | None:intergenic | 25.0% |
| !!! | TTATGTTTCACATTTTGAAG+AGG | + | chr2_3:57931292-57931311 | Msa0301580:CDS | 25.0% |
| !!! | TATGTTTCACATTTTGAAGA+GGG | + | chr2_3:57931293-57931312 | Msa0301580:CDS | 25.0% |
| ! | TAAGAGTTCAAGATTCTTAA+AGG | + | chr2_3:57931502-57931521 | Msa0301580:CDS | 25.0% |
| !!! | TTGCACAAAATTTGTTAGAT+GGG | + | chr2_3:57931525-57931544 | Msa0301580:CDS | 25.0% |
| !! | TACAGTAACTTGTAAGTAAA+AGG | + | chr2_3:57931836-57931855 | Msa0301580:intron | 25.0% |
| !!! | GCAAGTTTTAATTTCTGAAA+AGG | + | chr2_3:57931898-57931917 | Msa0301580:intron | 25.0% |
| !! | ATGATCTGTTAGATCATTTT+GGG | - | chr2_3:57932460-57932479 | None:intergenic | 25.0% |
| !! | TATGATCTGTTAGATCATTT+TGG | - | chr2_3:57932461-57932480 | None:intergenic | 25.0% |
| !!! | CTCTTATTTGTTTTGAAACT+TGG | + | chr2_3:57932526-57932545 | Msa0301580:intron | 25.0% |
| ! | AAATTGTATATCGAGACATT+TGG | + | chr2_3:57933356-57933375 | Msa0301580:intron | 25.0% |
| ! | AAAGTAATTGACCATTGTTA+TGG | - | chr2_3:57933406-57933425 | None:intergenic | 25.0% |
| !!! | TATTGATTTTCTTAGTATGC+AGG | - | chr2_3:57933533-57933552 | None:intergenic | 25.0% |
| ! | AATTTGATACCTGCATTAAT+CGG | - | chr2_3:57933636-57933655 | None:intergenic | 25.0% |
| ! | AGAAGTAAATGAGTTAAATG+AGG | + | chr2_3:57933894-57933913 | Msa0301580:CDS | 25.0% |
| !! | AACTGAGTGATTTTGGAAAT+TGG | + | chr2_3:57930961-57930980 | Msa0301580:CDS | 30.0% |
| ATCAACTCACTGATCAATAT+TGG | + | chr2_3:57931006-57931025 | Msa0301580:CDS | 30.0% | |
| TCTCTTTCTTATGTATATGG+TGG | + | chr2_3:57931050-57931069 | Msa0301580:CDS | 30.0% | |
| GAATCAGAATAATTCTTTGC+AGG | + | chr2_3:57931100-57931119 | Msa0301580:CDS | 30.0% | |
| CTTATGCATCATAATAGTCA+AGG | + | chr2_3:57931173-57931192 | Msa0301580:CDS | 30.0% | |
| !! | AATGATAAGCTTTGTGGTTT+TGG | - | chr2_3:57931236-57931255 | None:intergenic | 30.0% |
| ! | AGTGATAATGATAAGCTTTG+TGG | - | chr2_3:57931242-57931261 | None:intergenic | 30.0% |
| AAAATCATCACATCAAGACT+TGG | + | chr2_3:57931385-57931404 | Msa0301580:CDS | 30.0% | |
| TAGTACTAGTTATGGAAATC+TGG | + | chr2_3:57931442-57931461 | Msa0301580:CDS | 30.0% | |
| AGTACTAGTTATGGAAATCT+GGG | + | chr2_3:57931443-57931462 | Msa0301580:CDS | 30.0% | |
| TAGTAGCATAACCAGTAAAA+GGG | - | chr2_3:57931478-57931497 | None:intergenic | 30.0% | |
| ATAGTAGCATAACCAGTAAA+AGG | - | chr2_3:57931479-57931498 | None:intergenic | 30.0% | |
| !! | GTTGCACAAAATTTGTTAGA+TGG | + | chr2_3:57931524-57931543 | Msa0301580:CDS | 30.0% |
| AATTGTCTCAAGTATATGCA+AGG | - | chr2_3:57932000-57932019 | None:intergenic | 30.0% | |
| TCTATACTGAAAATCCAAGA+TGG | + | chr2_3:57932426-57932445 | Msa0301580:intron | 30.0% | |
| GTTATCAGCATCACTTTAAT+AGG | + | chr2_3:57932493-57932512 | Msa0301580:intron | 30.0% | |
| AACCTATATTACACATATCC+CGG | - | chr2_3:57932691-57932710 | None:intergenic | 30.0% | |
| ! | TAGTTTAGAACTATTGGTTG+TGG | - | chr2_3:57932916-57932935 | None:intergenic | 30.0% |
| ! | GTCAACTAGTTTAGAACTAT+TGG | - | chr2_3:57932922-57932941 | None:intergenic | 30.0% |
| ACTAGTTGACACTAATAATG+TGG | + | chr2_3:57932932-57932951 | Msa0301580:CDS | 30.0% | |
| !! | TTTCAGGTCTATTCTTTTGT+AGG | - | chr2_3:57932983-57933002 | None:intergenic | 30.0% |
| ACAAAAGAATAGACCTGAAA+AGG | + | chr2_3:57932983-57933002 | Msa0301580:CDS | 30.0% | |
| TTAAGTGAATTCAAAGGAGT+AGG | - | chr2_3:57933311-57933330 | None:intergenic | 30.0% | |
| TCCTTTGAATTCACTTAAGT+TGG | + | chr2_3:57933313-57933332 | Msa0301580:intron | 30.0% | |
| ! | TCTTAAGTTGTCCATAACAA+TGG | + | chr2_3:57933392-57933411 | Msa0301580:intron | 30.0% |
| AAACTATATCCGATTAATGC+AGG | + | chr2_3:57933624-57933643 | Msa0301580:intron | 30.0% | |
| GATTAATGCAGGTATCAAAT+TGG | + | chr2_3:57933635-57933654 | Msa0301580:intron | 30.0% | |
| CAAATTCAATGTATGGAACT+TGG | + | chr2_3:57933850-57933869 | Msa0301580:CDS | 30.0% | |
| ! | TAGAGAGAAGAGGTATAAAT+TGG | + | chr2_3:57933930-57933949 | Msa0301580:CDS | 30.0% |
| ! | AAGAGGTATAAATTGGAATG+TGG | + | chr2_3:57933937-57933956 | Msa0301580:CDS | 30.0% |
| ! | TTTTTGCCATATAGACATAG+TGG | + | chr2_3:57933994-57934013 | Msa0301580:CDS | 30.0% |
| TTTCATTGACATTGGAACTT+AGG | + | chr2_3:57934051-57934070 | Msa0301580:exon | 30.0% | |
| TGACTTTGTAGGATGATTAT+TGG | + | chr2_3:57934106-57934125 | Msa0301580:three_prime_UTR | 30.0% | |
| ! | CCTAGTTCTTGATACTCAAA+AGG | - | chr2_3:57930867-57930886 | None:intergenic | 35.0% |
| !! | CCTTTTGAGTATCAAGAACT+AGG | + | chr2_3:57930864-57930883 | Msa0301580:CDS | 35.0% |
| TGTTGCATCATTAACCTACT+TGG | - | chr2_3:57930903-57930922 | None:intergenic | 35.0% | |
| AAATCACTCAGTTCAGAATG+AGG | - | chr2_3:57930954-57930973 | None:intergenic | 35.0% | |
| ! | CATTCTGAACTGAGTGATTT+TGG | + | chr2_3:57930954-57930973 | Msa0301580:CDS | 35.0% |
| !! | TATTGATCAGTGAGTTGATG+TGG | - | chr2_3:57931005-57931024 | None:intergenic | 35.0% |
| ! | TATGGTGGTGAAAAGCAATT+AGG | + | chr2_3:57931065-57931084 | Msa0301580:CDS | 35.0% |
| TCAAGTCTATCACTTCCAAT+AGG | + | chr2_3:57931129-57931148 | Msa0301580:CDS | 35.0% | |
| ! | CAATCTCTAGAAATGATGGA+AGG | - | chr2_3:57931362-57931381 | None:intergenic | 35.0% |
| ! | TCCATCATTTCTAGAGATTG+TGG | + | chr2_3:57931362-57931381 | Msa0301580:CDS | 35.0% |
| ! | TCCACAATCTCTAGAAATGA+TGG | - | chr2_3:57931366-57931385 | None:intergenic | 35.0% |
| TTTCCATAACTAGTACTAGC+AGG | - | chr2_3:57931440-57931459 | None:intergenic | 35.0% | |
| ! | TCACATGTTGTCACCAATTT+TGG | - | chr2_3:57931560-57931579 | None:intergenic | 35.0% |
| !! | ATGTGATGTTTCTGAAACTG+AGG | + | chr2_3:57931574-57931593 | Msa0301580:CDS | 35.0% |
| AAACTGAGGTTGCTTCTAAA+GGG | + | chr2_3:57931588-57931607 | Msa0301580:CDS | 35.0% | |
| !! | AATGTTTCCTAGTGCTGATT+GGG | + | chr2_3:57931637-57931656 | Msa0301580:CDS | 35.0% |
| ! | GCTTTATTCTGCTGATAATC+TGG | - | chr2_3:57931695-57931714 | None:intergenic | 35.0% |
| CACAACAGCATAAAGTCATT+TGG | - | chr2_3:57931862-57931881 | None:intergenic | 35.0% | |
| AATGACTTTATGCTGTTGTG+TGG | + | chr2_3:57931862-57931881 | Msa0301580:intron | 35.0% | |
| GAAAATGTATGTCACCTAGA+TGG | - | chr2_3:57932120-57932139 | None:intergenic | 35.0% | |
| ! | CTGTTTTCGTCAACAGTTTA+AGG | + | chr2_3:57932319-57932338 | Msa0301580:intron | 35.0% |
| ! | TTTGATAACACCACAGCAAT+TGG | + | chr2_3:57932402-57932421 | Msa0301580:intron | 35.0% |
| ! | TTGATAACACCACAGCAATT+GGG | + | chr2_3:57932403-57932422 | Msa0301580:intron | 35.0% |
| AAACCATTTGCATCTGTTGA+TGG | - | chr2_3:57932734-57932753 | None:intergenic | 35.0% | |
| ! | GTATTGACAAATCATTTCGC+AGG | - | chr2_3:57932890-57932909 | None:intergenic | 35.0% |
| ! | TTAGAACTATTGGTTGTGGT+CGG | - | chr2_3:57932912-57932931 | None:intergenic | 35.0% |
| ! | GTTTTCATGATCCACAACAA+CGG | + | chr2_3:57933015-57933034 | Msa0301580:CDS | 35.0% |
| AGTAGCCAACACATGTTTAT+CGG | - | chr2_3:57933257-57933276 | None:intergenic | 35.0% | |
| GCCAACTTAAGTGAATTCAA+AGG | - | chr2_3:57933317-57933336 | None:intergenic | 35.0% | |
| ACCCTAAAAATTTCCACTGT+TGG | + | chr2_3:57933436-57933455 | Msa0301580:intron | 35.0% | |
| ! | GCCAACAGTGGAAATTTTTA+GGG | - | chr2_3:57933440-57933459 | None:intergenic | 35.0% |
| ATGTGTACTTCTTCAACCAT+AGG | - | chr2_3:57933691-57933710 | None:intergenic | 35.0% | |
| ATGCTTGACAAAAAAACAGC+AGG | + | chr2_3:57933709-57933728 | Msa0301580:CDS | 35.0% | |
| ATTTGGACTGCAATTCTCAT+TGG | - | chr2_3:57933737-57933756 | None:intergenic | 35.0% | |
| AGTCCAAATGAGAGAACTTA+TGG | + | chr2_3:57933748-57933767 | Msa0301580:CDS | 35.0% | |
| TTCAATGCCTTATCCATTCT+AGG | - | chr2_3:57933799-57933818 | None:intergenic | 35.0% | |
| GTAAATGAGTTAAATGAGGC+AGG | + | chr2_3:57933898-57933917 | Msa0301580:CDS | 35.0% | |
| ATGTGGAATGAGTTCAAGAA+TGG | + | chr2_3:57933954-57933973 | Msa0301580:CDS | 35.0% | |
| AAGAATGGATGGAACACTTA+TGG | + | chr2_3:57933969-57933988 | Msa0301580:CDS | 35.0% | |
| TCATGTCCACTATGTCTATA+TGG | - | chr2_3:57934003-57934022 | None:intergenic | 35.0% | |
| TGGATCTGTTTCATTGACAT+TGG | + | chr2_3:57934043-57934062 | Msa0301580:exon | 35.0% | |
| CTTAGACATCTTGACTTTGT+AGG | + | chr2_3:57934095-57934114 | Msa0301580:three_prime_UTR | 35.0% | |
| CATTTCTGACTCTGACCTAT+TGG | - | chr2_3:57931147-57931166 | None:intergenic | 40.0% | |
| CAATAGGTCAGAGTCAGAAA+TGG | + | chr2_3:57931145-57931164 | Msa0301580:CDS | 40.0% | |
| ATCATCACATCAAGACTTGG+TGG | + | chr2_3:57931388-57931407 | Msa0301580:CDS | 40.0% | |
| CTAGCAGGACTCTTTGAATT+AGG | - | chr2_3:57931425-57931444 | None:intergenic | 40.0% | |
| AGTCCTGCTAGTACTAGTTA+TGG | + | chr2_3:57931434-57931453 | Msa0301580:CDS | 40.0% | |
| ! | TGGGTTTTGCTCTCCAAAAT+TGG | + | chr2_3:57931544-57931563 | Msa0301580:CDS | 40.0% |
| GAAACTGAGGTTGCTTCTAA+AGG | + | chr2_3:57931587-57931606 | Msa0301580:CDS | 40.0% | |
| !! | CAATGTTTCCTAGTGCTGAT+TGG | + | chr2_3:57931636-57931655 | Msa0301580:CDS | 40.0% |
| !! | ATGTTTCCTAGTGCTGATTG+GGG | + | chr2_3:57931638-57931657 | Msa0301580:CDS | 40.0% |
| GTAGCTTAGGTGTTTCTTTG+CGG | + | chr2_3:57931669-57931688 | Msa0301580:CDS | 40.0% | |
| GCTTATGTTCATGCAAGAAG+AGG | + | chr2_3:57931718-57931737 | Msa0301580:CDS | 40.0% | |
| AACCCCTTGAAGCCTATAAA+TGG | + | chr2_3:57932070-57932089 | Msa0301580:intron | 40.0% | |
| ACCCCTTGAAGCCTATAAAT+GGG | + | chr2_3:57932071-57932090 | Msa0301580:intron | 40.0% | |
| ACAACCTTTCCCCCATTTAT+AGG | - | chr2_3:57932085-57932104 | None:intergenic | 40.0% | |
| ! | GGGAAAGGTTGTCATTTGAA+AGG | + | chr2_3:57932093-57932112 | Msa0301580:intron | 40.0% |
| GTCATTTGAAAGGTCCATCT+AGG | + | chr2_3:57932103-57932122 | Msa0301580:intron | 40.0% | |
| CTTTAATAGTCAAAGCCTGG+AGG | - | chr2_3:57932377-57932396 | None:intergenic | 40.0% | |
| ! | GAGCTTTAATAGTCAAAGCC+TGG | - | chr2_3:57932380-57932399 | None:intergenic | 40.0% |
| ! | TTTGGGCTCTAATTCCATCT+TGG | - | chr2_3:57932443-57932462 | None:intergenic | 40.0% |
| !!! | TGGTTTTGACACTGTTTTGC+CGG | + | chr2_3:57932669-57932688 | Msa0301580:intron | 40.0% |
| TGCCGGGATATGTGTAATAT+AGG | + | chr2_3:57932686-57932705 | Msa0301580:intron | 40.0% | |
| GTACCATCAACAGATGCAAA+TGG | + | chr2_3:57932728-57932747 | Msa0301580:CDS | 40.0% | |
| TCATCCTTTGAATCAGTAGC+AGG | + | chr2_3:57932756-57932775 | Msa0301580:CDS | 40.0% | |
| !! | AAGACCTGCTACTGATTCAA+AGG | - | chr2_3:57932763-57932782 | None:intergenic | 40.0% |
| TTCAAAGCCAGACTGATGTA+AGG | - | chr2_3:57932798-57932817 | None:intergenic | 40.0% | |
| TTCGCAGGACTTCACTTATA+TGG | - | chr2_3:57932875-57932894 | None:intergenic | 40.0% | |
| ! | AAACCTGATGGAACCTTTTC+AGG | - | chr2_3:57932999-57933018 | None:intergenic | 40.0% |
| TGTGGATCATGAAAACCTGA+TGG | - | chr2_3:57933011-57933030 | None:intergenic | 40.0% | |
| ! | CATGTTTATCGGTGTCTGTA+GGG | - | chr2_3:57933246-57933265 | None:intergenic | 40.0% |
| ! | ACATGTTTATCGGTGTCTGT+AGG | - | chr2_3:57933247-57933266 | None:intergenic | 40.0% |
| AGACACCGATAAACATGTGT+TGG | + | chr2_3:57933249-57933268 | Msa0301580:CDS | 40.0% | |
| ATCGAGACATTTGGTCACAT+TGG | + | chr2_3:57933365-57933384 | Msa0301580:intron | 40.0% | |
| ! | GGCCAACAGTGGAAATTTTT+AGG | - | chr2_3:57933441-57933460 | None:intergenic | 40.0% |
| GTGCCATAAGTTCTCTCATT+TGG | - | chr2_3:57933754-57933773 | None:intergenic | 40.0% | |
| ! | AGAACTTATGGCACTGAAGT+GGG | + | chr2_3:57933760-57933779 | Msa0301580:CDS | 40.0% |
| AGTTAAATGAGGCAGGACAA+TGG | + | chr2_3:57933905-57933924 | Msa0301580:CDS | 40.0% | |
| GGAATGAGTTCAAGAATGGA+TGG | + | chr2_3:57933958-57933977 | Msa0301580:CDS | 40.0% | |
| CATGATGTTGTGAGATCACT+TGG | + | chr2_3:57934018-57934037 | Msa0301580:CDS | 40.0% | |
| TGTTGTGAGATCACTTGGAT+TGG | + | chr2_3:57934023-57934042 | Msa0301580:CDS | 40.0% | |
| TTGACATTGGAACTTAGGCA+TGG | + | chr2_3:57934056-57934075 | Msa0301580:exon | 40.0% | |
| TTGGCATGTACCTTGTAATG+TGG | + | chr2_3:57934125-57934144 | Msa0301580:three_prime_UTR | 40.0% | |
| AGAGTCAAGACCACATTACA+AGG | - | chr2_3:57934138-57934157 | None:intergenic | 40.0% | |
| ! | TGTAATGTGGTCTTGACTCT+TGG | + | chr2_3:57934138-57934157 | Msa0301580:three_prime_UTR | 40.0% |
| ! | GTAATGTGGTCTTGACTCTT+GGG | + | chr2_3:57934139-57934158 | Msa0301580:three_prime_UTR | 40.0% |
| !! | TCACATCAAGACTTGGTGGT+TGG | + | chr2_3:57931392-57931411 | Msa0301580:CDS | 45.0% |
| TATGGAAATCTGGGTCCACT+TGG | + | chr2_3:57931452-57931471 | Msa0301580:CDS | 45.0% | |
| TAACCAGTAAAAGGGCCAAG+TGG | - | chr2_3:57931470-57931489 | None:intergenic | 45.0% | |
| !! | TGTTTCCTAGTGCTGATTGG+GGG | + | chr2_3:57931639-57931658 | Msa0301580:CDS | 45.0% |
| ! | TCTAGAGACTAGAGAGCATG+AGG | + | chr2_3:57931960-57931979 | Msa0301580:intron | 45.0% |
| CCCCATTTATAGGCTTCAAG+GGG | - | chr2_3:57932075-57932094 | None:intergenic | 45.0% | |
| CCCCTTGAAGCCTATAAATG+GGG | + | chr2_3:57932072-57932091 | Msa0301580:intron | 45.0% | |
| CCCCCATTTATAGGCTTCAA+GGG | - | chr2_3:57932076-57932095 | None:intergenic | 45.0% | |
| CCCTTGAAGCCTATAAATGG+GGG | + | chr2_3:57932073-57932092 | Msa0301580:intron | 45.0% | |
| TCCCCCATTTATAGGCTTCA+AGG | - | chr2_3:57932077-57932096 | None:intergenic | 45.0% | |
| GAAGCCTATAAATGGGGGAA+AGG | + | chr2_3:57932078-57932097 | Msa0301580:intron | 45.0% | |
| ACCATGAATTACTCGACGAG+GGG | - | chr2_3:57932294-57932313 | None:intergenic | 45.0% | |
| CACCATGAATTACTCGACGA+GGG | - | chr2_3:57932295-57932314 | None:intergenic | 45.0% | |
| TCACCATGAATTACTCGACG+AGG | - | chr2_3:57932296-57932315 | None:intergenic | 45.0% | |
| AATTTGTACCATGGACCTCC+AGG | + | chr2_3:57932359-57932378 | Msa0301580:intron | 45.0% | |
| CAGTATAGACCCAATTGCTG+TGG | - | chr2_3:57932415-57932434 | None:intergenic | 45.0% | |
| !! | GGTTTTGACACTGTTTTGCC+GGG | + | chr2_3:57932670-57932689 | Msa0301580:intron | 45.0% |
| AGCTACTCCTTACATCAGTC+TGG | + | chr2_3:57932788-57932807 | Msa0301580:CDS | 45.0% | |
| ! | GGCTTTGATCCATGCATCTT+AGG | - | chr2_3:57932962-57932981 | None:intergenic | 45.0% |
| AGACCTGAAAAGGTTCCATC+AGG | + | chr2_3:57932993-57933012 | Msa0301580:CDS | 45.0% | |
| ATCCACAACAACGGCATGTT+TGG | + | chr2_3:57933024-57933043 | Msa0301580:CDS | 45.0% | |
| GAGACAGAGAGACAAACGTA+CGG | - | chr2_3:57933122-57933141 | None:intergenic | 45.0% | |
| !! | CATGTGTTGGCTACTCAAAC+TGG | + | chr2_3:57933262-57933281 | Msa0301580:CDS | 45.0% |
| TTTATGGATCTGGCCAACAG+TGG | - | chr2_3:57933452-57933471 | None:intergenic | 45.0% | |
| ! | GAGAACTTATGGCACTGAAG+TGG | + | chr2_3:57933759-57933778 | Msa0301580:CDS | 45.0% |
| ATGCCTTATCCATTCTAGGC+TGG | - | chr2_3:57933795-57933814 | None:intergenic | 45.0% | |
| GACAATGGAGTAGAGAGAAG+AGG | + | chr2_3:57933920-57933939 | Msa0301580:CDS | 45.0% | |
| ! | GAACTTAGGCATGGTGTTGA+AGG | + | chr2_3:57934065-57934084 | Msa0301580:three_prime_UTR | 45.0% |
| !!! | AGTTTAATTATTATATTTTT+TGG | + | chr2_3:57933199-57933218 | Msa0301580:intron | 5.0% |
| GTGCAGCTTCAGAACCAAGT+AGG | + | chr2_3:57930886-57930905 | Msa0301580:CDS | 50.0% | |
| TGGGGGAACAGAAGTAGCTT+AGG | + | chr2_3:57931656-57931675 | Msa0301580:CDS | 50.0% | |
| ! | GCTGTTGTGTGGACTGCAAA+AGG | + | chr2_3:57931873-57931892 | Msa0301580:intron | 50.0% |
| TCCCCTCGTCGAGTAATTCA+TGG | + | chr2_3:57932290-57932309 | Msa0301580:intron | 50.0% | |
| TGTGGCAAGCCTAAGATGCA+TGG | + | chr2_3:57932950-57932969 | Msa0301580:CDS | 50.0% | |
| CTCCAAACATGCCGTTGTTG+TGG | - | chr2_3:57933029-57933048 | None:intergenic | 50.0% | |
| CACAACAACGGCATGTTTGG+AGG | + | chr2_3:57933027-57933046 | Msa0301580:CDS | 50.0% | |
| ! | CAGTGGCGATTCTAAGAGCT+TGG | + | chr2_3:57933075-57933094 | Msa0301580:CDS | 50.0% |
| !! | AACTGGTCTTTCGCGAAACC+AGG | + | chr2_3:57933279-57933298 | Msa0301580:CDS | 50.0% |
| CAAAGGAGTAGGAACCTACC+TGG | - | chr2_3:57933300-57933319 | None:intergenic | 50.0% | |
| TTAATGCTCGAGTTCGCGTG+TGG | + | chr2_3:57933662-57933681 | Msa0301580:CDS | 50.0% | |
| TTCATGCAGCCAGCCTAGAA+TGG | + | chr2_3:57933783-57933802 | Msa0301580:CDS | 50.0% | |
| CAGCCAGCCTAGAATGGATA+AGG | + | chr2_3:57933789-57933808 | Msa0301580:CDS | 50.0% | |
| ! | GGTCCACTTGGCCCTTTTAC+TGG | + | chr2_3:57931464-57931483 | Msa0301580:CDS | 55.0% |
| CTGTTCCCCCAATCAGCACT+AGG | - | chr2_3:57931647-57931666 | None:intergenic | 55.0% | |
| AGTCAAAGCCTGGAGGTCCA+TGG | - | chr2_3:57932370-57932389 | None:intergenic | 55.0% | |
| CATGTTTGGAGGCCTCAGAG+AGG | + | chr2_3:57933038-57933057 | Msa0301580:CDS | 55.0% | |
| AGAATCGCCACTGCACGTTC+CGG | - | chr2_3:57933068-57933087 | None:intergenic | 55.0% | |
| GGTCTTTCGCGAAACCAGGT+AGG | + | chr2_3:57933283-57933302 | Msa0301580:intron | 55.0% | |
| AGTTCGCGTGTGGAAGCCTA+TGG | + | chr2_3:57933672-57933691 | Msa0301580:CDS | 55.0% | |
| GAGGCCTCAGAGAGGCTTTC+CGG | + | chr2_3:57933046-57933065 | Msa0301580:CDS | 60.0% | |
| CGTTCCGGAAAGCCTCTCTG+AGG | - | chr2_3:57933053-57933072 | None:intergenic | 60.0% | |
| AGGCTTTCCGGAACGTGCAG+TGG | + | chr2_3:57933058-57933077 | Msa0301580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 57930753 | 57934174 | 57930753 | ID=Msa0301580;Name=Msa0301580 |
| chr2_3 | mRNA | 57930753 | 57934174 | 57930753 | ID=Msa0301580-mRNA-1;Parent=Msa0301580;Name=Msa0301580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.5|1|1|1|4|115|624 |
| chr2_3 | exon | 57930753 | 57931739 | 57930753 | ID=Msa0301580-mRNA-1:exon:18650;Parent=Msa0301580-mRNA-1 |
| chr2_3 | exon | 57932708 | 57933120 | 57932708 | ID=Msa0301580-mRNA-1:exon:18651;Parent=Msa0301580-mRNA-1 |
| chr2_3 | exon | 57933240 | 57933300 | 57933240 | ID=Msa0301580-mRNA-1:exon:18652;Parent=Msa0301580-mRNA-1 |
| chr2_3 | exon | 57933646 | 57934174 | 57933646 | ID=Msa0301580-mRNA-1:exon:18653;Parent=Msa0301580-mRNA-1 |
| chr2_3 | CDS | 57930753 | 57931739 | 57930753 | ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1 |
| chr2_3 | CDS | 57932708 | 57933120 | 57932708 | ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1 |
| chr2_3 | CDS | 57933240 | 57933300 | 57933240 | ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1 |
| chr2_3 | CDS | 57933646 | 57934059 | 57933646 | ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1 |
| chr2_3 | three_prime_UTR | 57934060 | 57934174 | 57934060 | ID=Msa0301580-mRNA-1:three_prime_utr;Parent=Msa0301580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
