AlfalfaGEDB | Msa0301580

M. sativa cultivar zhongmu-4 / Msa0301580

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010016 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010223 GO:0010228 GO:0010229 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141
PFAM: PF07526.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301580	KEH39362.1	94.391	624	27	3	1	624	1	616	0.0	1165

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301580	sp\|Q9SJJ3\|BLH8_ARATH	50.338	296	106	6	238	526	251	512	2.24e-80	268

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0301580	TF	HB-BELL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0055450	Msa0301580	0.811309	7.467176e-51	-8.615850e-47
Msa0124130	Msa0301580	0.802663	5.042190e-49	-8.615850e-47
Msa0197100	Msa0301580	0.804193	2.430069e-49	-8.615850e-47
Msa0222250	Msa0301580	0.832972	6.966152e-56	-8.615850e-47
Msa0239030	Msa0301580	0.807526	4.841845e-50	-8.615850e-47
Msa0252770	Msa0301580	0.803928	2.758843e-49	-8.615850e-47
Msa0301580	Msa0316680	0.807683	4.483909e-50	-8.615850e-47
Msa0301580	Msa0338970	0.848302	6.682694e-60	-8.615850e-47
Msa0301580	Msa0451400	0.809257	2.069199e-50	-8.615850e-47
Msa0301580	Msa0782360	0.812516	4.077271e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301580	MtrunA17_Chr2g0327021	94.391	624	27	3	1	624	1	616	0.0	1165
Msa0301580	MtrunA17_Chr4g0028701	49.083	436	164	12	222	620	218	632	2.64e-116	361
Msa0301580	MtrunA17_Chr7g0240371	47.122	278	123	5	236	513	124	377	2.02e-76	252
Msa0301580	MtrunA17_Chr4g0008591	47.368	285	117	4	242	521	189	445	2.47e-74	249
Msa0301580	MtrunA17_Chr8g0373801	43.060	281	136	5	245	515	384	650	1.59e-64	227
Msa0301580	MtrunA17_Chr1g0177751	44.061	261	127	4	248	502	160	407	1.34e-60	213
Msa0301580	MtrunA17_Chr5g0403251	41.455	275	137	7	245	508	330	591	4.39e-60	214
Msa0301580	MtrunA17_Chr8g0387321	45.211	261	125	5	249	504	185	432	5.79e-60	211
Msa0301580	MtrunA17_Chr7g0267481	47.788	226	97	4	303	525	232	439	1.57e-59	211
Msa0301580	MtrunA17_Chr3g0141941	40.625	288	138	5	245	521	158	423	2.59e-59	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301580	AT2G27990.1	50.338	296	106	6	238	526	251	512	2.28e-81	268
Msa0301580	AT5G02030.1	46.974	347	138	11	185	511	98	418	8.47e-73	245
Msa0301580	AT4G34610.2	44.631	298	137	8	250	543	141	414	1.41e-66	227
Msa0301580	AT4G34610.4	44.631	298	137	8	250	543	141	414	1.41e-66	227
Msa0301580	AT4G34610.3	44.631	298	137	8	250	543	141	414	1.41e-66	227
Msa0301580	AT4G34610.1	44.631	298	137	8	250	543	141	414	1.41e-66	227
Msa0301580	AT1G75410.1	39.306	346	192	6	168	508	81	413	1.37e-65	224
Msa0301580	AT1G75410.2	39.306	346	192	6	168	508	81	413	1.37e-65	224
Msa0301580	AT4G36870.2	45.489	266	127	5	249	508	312	565	1.34e-64	226
Msa0301580	AT4G36870.1	45.489	266	127	5	249	508	312	565	1.34e-64	226

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Find 120 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCACATCAAGACT+TGG	0.614582	2_3:+57931385	Msa0301580:CDS
AAACCATTTGCATCTGTTGA+TGG	0.333209	2_3:-57932731	None:intergenic
AAACTGAGGTTGCTTCTAAA+GGG	0.476654	2_3:+57931588	Msa0301580:CDS
AAATCACTCAGTTCAGAATG+AGG	0.558152	2_3:-57930951	None:intergenic
AACTGGTCTTTCGCGAAACC+AGG	0.498308	2_3:+57933279	Msa0301580:CDS
AAGAATGGATGGAACACTTA+TGG	0.325450	2_3:+57933969	Msa0301580:CDS
AAGACCTGCTACTGATTCAA+AGG	0.547681	2_3:-57932760	None:intergenic
AAGAGGTATAAATTGGAATG+TGG	0.564061	2_3:+57933937	Msa0301580:CDS
AATGATAAGCTTTGTGGTTT+TGG	0.247497	2_3:-57931233	None:intergenic
AATGTTTCCTAGTGCTGATT+GGG	0.352550	2_3:+57931637	Msa0301580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAACTCACTGATCAATAT+TGG	+	chr2_3:57931006-57931025	Msa0301580:CDS	30.0%
TCTCTTTCTTATGTATATGG+TGG	+	chr2_3:57931050-57931069	Msa0301580:CDS	30.0%
GAATCAGAATAATTCTTTGC+AGG	+	chr2_3:57931100-57931119	Msa0301580:CDS	30.0%
CTTATGCATCATAATAGTCA+AGG	+	chr2_3:57931173-57931192	Msa0301580:CDS	30.0%
AAAATCATCACATCAAGACT+TGG	+	chr2_3:57931385-57931404	Msa0301580:CDS	30.0%
TAGTACTAGTTATGGAAATC+TGG	+	chr2_3:57931442-57931461	Msa0301580:CDS	30.0%
AGTACTAGTTATGGAAATCT+GGG	+	chr2_3:57931443-57931462	Msa0301580:CDS	30.0%
TAGTAGCATAACCAGTAAAA+GGG	-	chr2_3:57931478-57931497	None:intergenic	30.0%
ATAGTAGCATAACCAGTAAA+AGG	-	chr2_3:57931479-57931498	None:intergenic	30.0%
AATTGTCTCAAGTATATGCA+AGG	-	chr2_3:57932000-57932019	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	57930753	57934174	57930753	ID=Msa0301580;Name=Msa0301580
chr2_3	mRNA	57930753	57934174	57930753	ID=Msa0301580-mRNA-1;Parent=Msa0301580;Name=Msa0301580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|1\|0.5\|1\|1\|1\|4\|115\|624
chr2_3	exon	57930753	57931739	57930753	ID=Msa0301580-mRNA-1:exon:18650;Parent=Msa0301580-mRNA-1
chr2_3	exon	57932708	57933120	57932708	ID=Msa0301580-mRNA-1:exon:18651;Parent=Msa0301580-mRNA-1
chr2_3	exon	57933240	57933300	57933240	ID=Msa0301580-mRNA-1:exon:18652;Parent=Msa0301580-mRNA-1
chr2_3	exon	57933646	57934174	57933646	ID=Msa0301580-mRNA-1:exon:18653;Parent=Msa0301580-mRNA-1
chr2_3	CDS	57930753	57931739	57930753	ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1
chr2_3	CDS	57932708	57933120	57932708	ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1
chr2_3	CDS	57933240	57933300	57933240	ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1
chr2_3	CDS	57933646	57934059	57933646	ID=Msa0301580-mRNA-1:cds;Parent=Msa0301580-mRNA-1
chr2_3	three_prime_UTR	57934060	57934174	57934060	ID=Msa0301580-mRNA-1:three_prime_utr;Parent=Msa0301580-mRNA-1

Gene Sequence

>Msa0301580

ATGCAGGATCTTGTTCAAGTTAGAAACCTTAGAAATGCAAATTATAAGCTTGATGAACCAGTTTATTCATCAACAGAAATGCTCAACTTCTTAACTACTACTACTTCAAATCCTTTTGAGTATCAAGAACTAGGTGCAGCTTCAGAACCAAGTAGGTTAATGATGCAACATTATCATCAGCAACATTATGCTTCATTACCTCATTCTGAACTGAGTGATTTTGGAAATTGGAGAAACAGTGTTTCTGCTCCACATCAACTCACTGATCAATATTGGTTATTAAACAATGCAAACAATTCTCTTTCTTATGTATATGGTGGTGAAAAGCAATTAGGTTTGATGCATCAGAATCAGAATAATTCTTTGCAGGATGTTGTCAAGTCTATCACTTCCAATAGGTCAGAGTCAGAAATGGCATCACTTATGCATCATAATAGTCAAGGAATTTGTGTTGAAAATGCTTCTGAGCTTCAACTTCAACCAAAACCACAAAGCTTATCATTATCACTTTCATCTAATAATATTACACAAAACAAGGCTTATGTTTCACATTTTGAAGAGGGTACTTCTTCAACAGATGAATTTCAAAGAATGAAGCATATGAAGCCTTCCATCATTTCTAGAGATTGTGGAAAATCATCACATCAAGACTTGGTGGTTGGAATAATACCTAATTCAAAGAGTCCTGCTAGTACTAGTTATGGAAATCTGGGTCCACTTGGCCCTTTTACTGGTTATGCTACTATTCTTAAGAGTTCAAGATTCTTAAAGGTTGCACAAAATTTGTTAGATGGGTTTTGCTCTCCAAAATTGGTGACAACATGTGATGTTTCTGAAACTGAGGTTGCTTCTAAAGGGAGTAATTATTCATGTTCTTCATCATCAATGTTTCCTAGTGCTGATTGGGGGAACAGAAGTAGCTTAGGTGTTTCTTTGCGGCCAGATTATCAGCAGAATAAAGCGAAGCTTATGTTCATGCAAGAAGAGGTTAACAAGCGATACAAGCAGTACCATCAACAGATGCAAATGGTTTTTTCATCCTTTGAATCAGTAGCAGGTCTTAATTCAGCTACTCCTTACATCAGTCTGGCTTTGAAGACTGTATCAAAACACTTCAAGTGCCTAAATAATGCTATTTCAAATCAGCTCAACCATATAAGTGAAGTCCTGCGAAATGATTTGTCAATACCGACCACAACCAATAGTTCTAAACTAGTTGACACTAATAATGTGGCAAGCCTAAGATGCATGGATCAAAGCCTACAAAAGAATAGACCTGAAAAGGTTCCATCAGGTTTTCATGATCCACAACAACGGCATGTTTGGAGGCCTCAGAGAGGCTTTCCGGAACGTGCAGTGGCGATTCTAAGAGCTTGGTTGTTTGAACATTTTCTTCATCCTTACCCTACAGACACCGATAAACATGTGTTGGCTACTCAAACTGGTCTTTCGCGAAACCAGGTATCAAATTGGTTTATTAATGCTCGAGTTCGCGTGTGGAAGCCTATGGTTGAAGAAGTACACATGCTTGACAAAAAAACAGCAGGTGCCAATGAGAATTGCAGTCCAAATGAGAGAACTTATGGCACTGAAGTGGGTTCATGCAGCCAGCCTAGAATGGATAAGGCATTGAATAAGTTTGTTATGCATTCAATACCTGAAAATCAAATTCAATGTATGGAACTTGGTTCATCTATAGATACAAATGCAGAAGTAAATGAGTTAAATGAGGCAGGACAATGGAGTAGAGAGAAGAGGTATAAATTGGAATGTGGAATGAGTTCAAGAATGGATGGAACACTTATGGATTTTTTGCCATATAGACATAGTGGACATGATGTTGTGAGATCACTTGGATTGGATCTGTTTCATTGA

Protein sequence

>Msa0301580

MQDLVQVRNLRNANYKLDEPVYSSTEMLNFLTTTTSNPFEYQELGAASEPSRLMMQHYHQQHYASLPHSELSDFGNWRNSVSAPHQLTDQYWLLNNANNSLSYVYGGEKQLGLMHQNQNNSLQDVVKSITSNRSESEMASLMHHNSQGICVENASELQLQPKPQSLSLSLSSNNITQNKAYVSHFEEGTSSTDEFQRMKHMKPSIISRDCGKSSHQDLVVGIIPNSKSPASTSYGNLGPLGPFTGYATILKSSRFLKVAQNLLDGFCSPKLVTTCDVSETEVASKGSNYSCSSSSMFPSADWGNRSSLGVSLRPDYQQNKAKLMFMQEEVNKRYKQYHQQMQMVFSSFESVAGLNSATPYISLALKTVSKHFKCLNNAISNQLNHISEVLRNDLSIPTTTNSSKLVDTNNVASLRCMDQSLQKNRPEKVPSGFHDPQQRHVWRPQRGFPERAVAILRAWLFEHFLHPYPTDTDKHVLATQTGLSRNQVSNWFINARVRVWKPMVEEVHMLDKKTAGANENCSPNERTYGTEVGSCSQPRMDKALNKFVMHSIPENQIQCMELGSSIDTNAEVNELNEAGQWSREKRYKLECGMSSRMDGTLMDFLPYRHSGHDVVRSLGLDLFH*