Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223510 | XP_003597419.1 | 90.385 | 156 | 11 | 2 | 1 | 154 | 1 | 154 | 8.63e-83 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223510 | G7IRZ7 | 90.385 | 156 | 11 | 2 | 1 | 154 | 1 | 154 | 4.12e-83 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223510 | Msa0295040 | 0.977169 | 3.025682e-143 | -8.615850e-47 |
| Msa0223510 | Msa0339960 | 0.842256 | 2.890373e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223510 | MtrunA17_Chr2g0328751 | 90.385 | 156 | 11 | 2 | 1 | 154 | 1 | 154 | 7.94e-87 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223510 | AT5G52370.1 | 56.934 | 137 | 51 | 2 | 11 | 142 | 4 | 137 | 9.30e-47 | 149 |
| Msa0223510 | AT5G58990.1 | 70.238 | 84 | 25 | 0 | 55 | 138 | 59 | 142 | 5.82e-44 | 142 |
Find 44 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTCTCTTCACTCATTT+TGG | 0.107429 | 2_1:+73086768 | None:intergenic |
| CCTGACCATGAAATTTGTTT+TGG | 0.221543 | 2_1:+73090345 | Msa0223510:three_prime_UTR |
| GACCTTCTTTCTTTCTTTCT+CGG | 0.232940 | 2_1:-73086804 | None:intergenic |
| TCTTCATAGGTATTTCTCTT+TGG | 0.248862 | 2_1:+73090398 | Msa0223510:three_prime_UTR |
| CTTTGTATTGACTTTGGGTT+TGG | 0.289890 | 2_1:+73090160 | Msa0223510:three_prime_UTR |
| GTTTAATTCTCTTTCTTCAT+AGG | 0.294112 | 2_1:+73090385 | Msa0223510:three_prime_UTR |
| TTCTCCCAAAACAAATTTCA+TGG | 0.294163 | 2_1:-73090350 | None:intergenic |
| TACAAAGCATTAACTTGCTT+GGG | 0.302226 | 2_1:-73090144 | None:intergenic |
| AACTTCCTTCCAATGAGTTT+TGG | 0.309432 | 2_1:-73087048 | None:intergenic |
| TAATGCTTTGTATTGACTTT+GGG | 0.341936 | 2_1:+73090155 | Msa0223510:exon |
| AACCTTGTAGAGATTGAGTT+TGG | 0.370445 | 2_1:-73087084 | None:intergenic |
| TTAATGCTTTGTATTGACTT+TGG | 0.391640 | 2_1:+73090154 | Msa0223510:exon |
| CTTTCTTTCTTTCTCGGTTG+CGG | 0.399286 | 2_1:-73086798 | None:intergenic |
| GTGGAGTTCACAAGCGTTGT+TGG | 0.404726 | 2_1:+73090039 | Msa0223510:CDS |
| AAATCAATGGCGAATGCATT+AGG | 0.413021 | 2_1:+73086828 | Msa0223510:exon |
| CTTTGATTTCTTAGTAGCTT+CGG | 0.416628 | 2_1:-73086955 | None:intergenic |
| ATACAAAGCATTAACTTGCT+TGG | 0.423842 | 2_1:-73090145 | None:intergenic |
| CCAAAACAAATTTCATGGTC+AGG | 0.438794 | 2_1:-73090345 | None:intergenic |
| ATACCTTTCGCATTCATGTA+AGG | 0.451489 | 2_1:+73090281 | Msa0223510:three_prime_UTR |
| AGATGGAGAAGAAGTGGAAA+GGG | 0.459353 | 2_1:-73086919 | None:intergenic |
| GATGAAAGTGAAAGTGAAAG+TGG | 0.464963 | 2_1:-73086892 | None:intergenic |
| TTTGGGAGAATAAACTGAAT+GGG | 0.470019 | 2_1:+73090363 | Msa0223510:three_prime_UTR |
| TGGTAACCGATTCCCCAGTT+AGG | 0.472104 | 2_1:-73087020 | None:intergenic |
| ACCACATGGCCAAAACTCAT+TGG | 0.495437 | 2_1:+73087039 | Msa0223510:CDS |
| CACCAAACTCAATCTCTACA+AGG | 0.521765 | 2_1:+73087082 | Msa0223510:CDS |
| AGAAAGAAGGTCGAAATCAA+TGG | 0.528228 | 2_1:+73086815 | Msa0223510:exon |
| TCGGAAGCGGCATCAGAAGA+TGG | 0.536957 | 2_1:-73086936 | None:intergenic |
| AAGATGGAGAAGAAGTGGAA+AGG | 0.544670 | 2_1:-73086920 | None:intergenic |
| TGGAAAACATGGAAAAGCAT+GGG | 0.563870 | 2_1:+73087192 | Msa0223510:CDS |
| CGTTGTTGGAGGTACCTCCC+AGG | 0.564766 | 2_1:+73090053 | Msa0223510:CDS |
| TTTCTTAGTAGCTTCGGAAG+CGG | 0.572868 | 2_1:-73086949 | None:intergenic |
| ACAAAGCATTAACTTGCTTG+GGG | 0.578946 | 2_1:-73090143 | None:intergenic |
| CATGGCCAAAACTCATTGGA+AGG | 0.579589 | 2_1:+73087043 | Msa0223510:CDS |
| AACCGAGAAAGAAAGAAAGA+AGG | 0.587990 | 2_1:+73086802 | Msa0223510:five_prime_UTR |
| ACTGTCTGTGGAACTTGTCA+AGG | 0.589263 | 2_1:-73090105 | None:intergenic |
| ATGGAAAACATGGAAAAGCA+TGG | 0.589492 | 2_1:+73087191 | Msa0223510:CDS |
| GAGTTCACAAGCGTTGTTGG+AGG | 0.593322 | 2_1:+73090042 | Msa0223510:CDS |
| TCTGTGGAACTTGTCAAGGT+TGG | 0.598044 | 2_1:-73090101 | None:intergenic |
| ATCAGAAGATGGAGAAGAAG+TGG | 0.602316 | 2_1:-73086925 | None:intergenic |
| CTGGGGAATCGGTTACCACA+TGG | 0.607209 | 2_1:+73087025 | Msa0223510:CDS |
| GAACCTTACATGAATGCGAA+AGG | 0.624925 | 2_1:-73090284 | None:intergenic |
| AAACAAATTTCATGGTCAGG+AGG | 0.646633 | 2_1:-73090342 | None:intergenic |
| AAAATCTAATCTAAGACACA+AGG | 0.680620 | 2_1:-73090204 | None:intergenic |
| GGAAAACATGGAAAAGCATG+GGG | 0.695615 | 2_1:+73087193 | Msa0223510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTAATTTTTCAAAT+GGG | + | chr2_1:73087234-73087253 | Msa0223510:intron | 10.0% |
| !! | CATATATAAAAAAATTAAAG+GGG | - | chr2_1:73089027-73089046 | None:intergenic | 10.0% |
| !! | CCATATATAAAAAAATTAAA+GGG | - | chr2_1:73089028-73089047 | None:intergenic | 10.0% |
| !! | ACCATATATAAAAAAATTAA+AGG | - | chr2_1:73089029-73089048 | None:intergenic | 10.0% |
| !!! | AATAAAATAATTTTATCTAC+AGG | - | chr2_1:73089366-73089385 | None:intergenic | 10.0% |
| !!! | TTTATATTTTTTTCTTTTGC+AGG | + | chr2_1:73087168-73087187 | Msa0223510:intron | 15.0% |
| !!! | GTTAGTTTTAATTTTTCAAA+TGG | + | chr2_1:73087233-73087252 | Msa0223510:intron | 15.0% |
| !! | TAAAATTGTAAGATAATATG+AGG | - | chr2_1:73088079-73088098 | None:intergenic | 15.0% |
| !!! | TTGAATCATTTTTATGTTTA+AGG | + | chr2_1:73088298-73088317 | Msa0223510:intron | 15.0% |
| !!! | TATTAAATAAAGCAGATTTT+GGG | - | chr2_1:73088333-73088352 | None:intergenic | 15.0% |
| !!! | ATATTAAATAAAGCAGATTT+TGG | - | chr2_1:73088334-73088353 | None:intergenic | 15.0% |
| !!! | ATGTTTAAAAGTATGTTTAT+TGG | + | chr2_1:73088667-73088686 | Msa0223510:intron | 15.0% |
| !! | AAATTTATAATTTCTGTTGA+GGG | + | chr2_1:73088781-73088800 | Msa0223510:intron | 15.0% |
| !!! | CCCTTTAATTTTTTTATATA+TGG | + | chr2_1:73089025-73089044 | Msa0223510:intron | 15.0% |
| !! | TATGTTATATCAAATTCACT+TGG | + | chr2_1:73087353-73087372 | Msa0223510:intron | 20.0% |
| !!! | AACTTAAAGTTTAAAACAGA+AGG | - | chr2_1:73087821-73087840 | None:intergenic | 20.0% |
| !!! | TTTAAACTTTAAGTTCATCA+TGG | + | chr2_1:73087826-73087845 | Msa0223510:intron | 20.0% |
| !! | ATCTTGGTTTATCATATAAA+AGG | + | chr2_1:73087888-73087907 | Msa0223510:intron | 20.0% |
| !!! | AATCATTTTTATGTTTAAGG+TGG | + | chr2_1:73088301-73088320 | Msa0223510:intron | 20.0% |
| !! | TAAAAAGTCCCTTAAAAAAA+GGG | - | chr2_1:73088481-73088500 | None:intergenic | 20.0% |
| !! | TTAAAAAGTCCCTTAAAAAA+AGG | - | chr2_1:73088482-73088501 | None:intergenic | 20.0% |
| !! | AAAATACTATATCGAACATT+TGG | - | chr2_1:73088696-73088715 | None:intergenic | 20.0% |
| !! | GAAATTTATAATTTCTGTTG+AGG | + | chr2_1:73088780-73088799 | Msa0223510:intron | 20.0% |
| !!! | AAAGACCATATAATTTTACA+TGG | - | chr2_1:73089771-73089790 | None:intergenic | 20.0% |
| !!! | AATTTGTTCTAGCAATAATT+TGG | + | chr2_1:73089882-73089901 | Msa0223510:intron | 20.0% |
| !!! | TATTTTTTTCTTTTGCAGGA+TGG | + | chr2_1:73087172-73087191 | Msa0223510:intron | 25.0% |
| !!! | TTCAAATGGGTTTATTTTTC+TGG | + | chr2_1:73087247-73087266 | Msa0223510:intron | 25.0% |
| ! | AACTGTTTGATAAATGTTGT+AGG | + | chr2_1:73087289-73087308 | Msa0223510:intron | 25.0% |
| !! | AGTCATGTATTTGATGATTT+AGG | + | chr2_1:73087419-73087438 | Msa0223510:intron | 25.0% |
| !! | GTCATGTATTTGATGATTTA+GGG | + | chr2_1:73087420-73087439 | Msa0223510:intron | 25.0% |
| !! | AAGCATTTGCTACATTATTT+AGG | + | chr2_1:73087446-73087465 | Msa0223510:intron | 25.0% |
| ! | AGCTTATAACATAAACACTT+AGG | - | chr2_1:73087624-73087643 | None:intergenic | 25.0% |
| ! | ATTTGGATGTTAATATCTCT+AGG | + | chr2_1:73087725-73087744 | Msa0223510:intron | 25.0% |
| !! | GTGCAACATATATGAAATTT+TGG | - | chr2_1:73087761-73087780 | None:intergenic | 25.0% |
| !!! | TTATTTGGTTTGCTTAATCT+TGG | + | chr2_1:73087872-73087891 | Msa0223510:intron | 25.0% |
| !!! | TTGCTTGTTATATTCTTGTT+AGG | + | chr2_1:73087979-73087998 | Msa0223510:intron | 25.0% |
| !!! | TGCTTGTTATATTCTTGTTA+GGG | + | chr2_1:73087980-73087999 | Msa0223510:intron | 25.0% |
| !! | ATTTAAGGTGATAATCTACT+GGG | - | chr2_1:73088219-73088238 | None:intergenic | 25.0% |
| ! | AAGCATAAACATCTCATTTA+AGG | - | chr2_1:73088234-73088253 | None:intergenic | 25.0% |
| ! | TAAATGAGATGTTTATGCTT+AGG | + | chr2_1:73088234-73088253 | Msa0223510:intron | 25.0% |
| !! | TTCTACTGATAATGACTATA+TGG | - | chr2_1:73088362-73088381 | None:intergenic | 25.0% |
| ! | AAAAAGTCCCTTAAAAAAAG+GGG | - | chr2_1:73088480-73088499 | None:intergenic | 25.0% |
| !! | TTTAACTTATGACAAGATGT+AGG | + | chr2_1:73088497-73088516 | Msa0223510:intron | 25.0% |
| ! | TTAACTTATGACAAGATGTA+GGG | + | chr2_1:73088498-73088517 | Msa0223510:intron | 25.0% |
| ! | AAAGTAATTGCATTCATTTC+TGG | + | chr2_1:73088560-73088579 | Msa0223510:intron | 25.0% |
| ! | GCATATGTTTAATAGAAAGA+AGG | + | chr2_1:73088813-73088832 | Msa0223510:intron | 25.0% |
| ! | ATGTTTAATAGAAAGAAGGA+AGG | + | chr2_1:73088817-73088836 | Msa0223510:intron | 25.0% |
| ! | TGTTTAATAGAAAGAAGGAA+GGG | + | chr2_1:73088818-73088837 | Msa0223510:intron | 25.0% |
| ! | AGAAATTCGTCTAAATAGAA+AGG | + | chr2_1:73088864-73088883 | Msa0223510:intron | 25.0% |
| ! | TATTAAACATATGCTTCCTT+GGG | - | chr2_1:73088938-73088957 | None:intergenic | 25.0% |
| ! | GCATATGTTTAATAGAAAGA+AGG | + | chr2_1:73088813-73088832 | Msa0223510:intron | 25.0% |
| ! | ATGTTTAATAGAAAGAAGGA+AGG | + | chr2_1:73088817-73088836 | Msa0223510:intron | 25.0% |
| ! | TGTTTAATAGAAAGAAGGAA+GGG | + | chr2_1:73088818-73088837 | Msa0223510:intron | 25.0% |
| ! | TAAAAAAATTAAAGGGGTTC+TGG | - | chr2_1:73089021-73089040 | None:intergenic | 25.0% |
| ! | TTGAAAATACTCAAGCTTAA+TGG | + | chr2_1:73089160-73089179 | Msa0223510:intron | 25.0% |
| !!! | ATACAAAAGTTTGTTAGACA+GGG | - | chr2_1:73089213-73089232 | None:intergenic | 25.0% |
| !!! | AATACAAAAGTTTGTTAGAC+AGG | - | chr2_1:73089214-73089233 | None:intergenic | 25.0% |
| ! | AATAGCTTTCTACATGAAAA+TGG | - | chr2_1:73089267-73089286 | None:intergenic | 25.0% |
| ! | GAAATACACTTGCATTATAA+TGG | + | chr2_1:73089306-73089325 | Msa0223510:intron | 25.0% |
| !!! | TGCATTATAATGGATCTTTT+TGG | + | chr2_1:73089316-73089335 | Msa0223510:intron | 25.0% |
| !!! | GCATTATAATGGATCTTTTT+GGG | + | chr2_1:73089317-73089336 | Msa0223510:intron | 25.0% |
| !! | TGAAATCTAAAACTATTTCC+CGG | - | chr2_1:73089501-73089520 | None:intergenic | 25.0% |
| !!! | AGTTTTAGATTTCAAAGTAC+AGG | + | chr2_1:73089507-73089526 | Msa0223510:intron | 25.0% |
| !!! | GTTTTAGATTTCAAAGTACA+GGG | + | chr2_1:73089508-73089527 | Msa0223510:intron | 25.0% |
| !! | ATTTTCAATCATAACTGATG+TGG | - | chr2_1:73089540-73089559 | None:intergenic | 25.0% |
| ! | ATACTTTCAATCTTTGTATG+AGG | + | chr2_1:73089711-73089730 | Msa0223510:intron | 25.0% |
| !!! | TACAATGCACACTTTATTTT+TGG | - | chr2_1:73089924-73089943 | None:intergenic | 25.0% |
| !!! | TGAACTCCACTAATTTTTTT+CGG | - | chr2_1:73090029-73090048 | None:intergenic | 25.0% |
| !!! | TTAATGCTTTGTATTGACTT+TGG | + | chr2_1:73090154-73090173 | Msa0223510:exon | 25.0% |
| !!! | TAATGCTTTGTATTGACTTT+GGG | + | chr2_1:73090155-73090174 | Msa0223510:exon | 25.0% |
| !! | AAAATCTAATCTAAGACACA+AGG | - | chr2_1:73090207-73090226 | None:intergenic | 25.0% |
| !! | TCTTAGATTAGATTTTCAAC+TGG | + | chr2_1:73090211-73090230 | Msa0223510:three_prime_UTR | 25.0% |
| ! | GTTTAATTCTCTTTCTTCAT+AGG | + | chr2_1:73090385-73090404 | Msa0223510:three_prime_UTR | 25.0% |
| !!! | GTTTTGAAGAGTGTTGATTT+TGG | - | chr2_1:73086856-73086875 | None:intergenic | 30.0% |
| ! | CTTTGATTTCTTAGTAGCTT+CGG | - | chr2_1:73086958-73086977 | None:intergenic | 30.0% |
| TACTCCAAAATGTGAAAACA+AGG | - | chr2_1:73087385-73087404 | None:intergenic | 30.0% | |
| !!! | TCACATTTTGGAGTAAAAGT+TGG | + | chr2_1:73087390-73087409 | Msa0223510:intron | 30.0% |
| !! | GCTATTTTCATAAACTATCC+TGG | - | chr2_1:73087536-73087555 | None:intergenic | 30.0% |
| ! | AGTTTAAGTTTATCCCACTA+AGG | - | chr2_1:73087676-73087695 | None:intergenic | 30.0% |
| !!! | GCACTTATTTTATCACACAA+TGG | - | chr2_1:73087796-73087815 | None:intergenic | 30.0% |
| !!! | TCTTTTGTCATGGTCTTATT+TGG | + | chr2_1:73087857-73087876 | Msa0223510:intron | 30.0% |
| CCATAAAGAAAGAACAACAA+AGG | - | chr2_1:73087918-73087937 | None:intergenic | 30.0% | |
| !! | CCTTTGTTGTTCTTTCTTTA+TGG | + | chr2_1:73087915-73087934 | Msa0223510:intron | 30.0% |
| !! | GCTTGTTATATTCTTGTTAG+GGG | + | chr2_1:73087981-73088000 | Msa0223510:intron | 30.0% |
| TGTTAATGAAAGAATGAAGC+TGG | + | chr2_1:73088133-73088152 | Msa0223510:intron | 30.0% | |
| GTTAATGAAAGAATGAAGCT+GGG | + | chr2_1:73088134-73088153 | Msa0223510:intron | 30.0% | |
| ! | TTTTCAATACGCAAGTTTGA+CGG | - | chr2_1:73088180-73088199 | None:intergenic | 30.0% |
| ! | AATCTACTGGGTTCTATTTT+TGG | - | chr2_1:73088207-73088226 | None:intergenic | 30.0% |
| ! | CATTTAAGGTGATAATCTAC+TGG | - | chr2_1:73088220-73088239 | None:intergenic | 30.0% |
| GATTCAATAAGCAAGTTTGA+TGG | - | chr2_1:73088285-73088304 | None:intergenic | 30.0% | |
| !! | CATTTTTATGTTTAAGGTGG+TGG | + | chr2_1:73088304-73088323 | Msa0223510:intron | 30.0% |
| !!! | ACATAGAACCCCTTTTTTTA+AGG | + | chr2_1:73088469-73088488 | Msa0223510:intron | 30.0% |
| !!! | CATAGAACCCCTTTTTTTAA+GGG | + | chr2_1:73088470-73088489 | Msa0223510:intron | 30.0% |
| !!! | GGTTTTGTTATAAAACGTGT+TGG | + | chr2_1:73088581-73088600 | Msa0223510:intron | 30.0% |
| CTTAGTAGAACATTCTAACA+AGG | - | chr2_1:73088731-73088750 | None:intergenic | 30.0% | |
| AGAAAGGATTGTAATCTTGA+AGG | + | chr2_1:73088880-73088899 | Msa0223510:intron | 30.0% | |
| CTATTAAACATATGCTTCCT+TGG | - | chr2_1:73088939-73088958 | None:intergenic | 30.0% | |
| ATATATGGTTGTAATCCTGA+AGG | + | chr2_1:73089040-73089059 | Msa0223510:intron | 30.0% | |
| TATTCTAGGTATTACTAGCA+AGG | + | chr2_1:73089067-73089086 | Msa0223510:intron | 30.0% | |
| TACTAGCAAGGATTGTAATT+TGG | + | chr2_1:73089079-73089098 | Msa0223510:intron | 30.0% | |
| TATGCATGTTTATGTTACCT+TGG | + | chr2_1:73089106-73089125 | Msa0223510:intron | 30.0% | |
| TGCACTCAAATAAAATTCCA+AGG | - | chr2_1:73089126-73089145 | None:intergenic | 30.0% | |
| !! | TCTTTTTGGGCTAACTATTT+TGG | + | chr2_1:73089330-73089349 | Msa0223510:intron | 30.0% |
| TCATATTTCAGCTTGACTTT+AGG | + | chr2_1:73089440-73089459 | Msa0223510:intron | 30.0% | |
| ! | GAAATCTAAAACTATTTCCC+GGG | - | chr2_1:73089500-73089519 | None:intergenic | 30.0% |
| !! | GTCAACATTGTCTTTTTCAT+TGG | + | chr2_1:73089733-73089752 | Msa0223510:intron | 30.0% |
| GTGCTCCATGTAAAATTATA+TGG | + | chr2_1:73089763-73089782 | Msa0223510:intron | 30.0% | |
| !! | AATTGTATGTGTTGCTTGTA+TGG | + | chr2_1:73089821-73089840 | Msa0223510:intron | 30.0% |
| GATATCATGTAAATTGTTGC+AGG | + | chr2_1:73089984-73090003 | Msa0223510:intron | 30.0% | |
| !! | TACAAAGCATTAACTTGCTT+GGG | - | chr2_1:73090147-73090166 | None:intergenic | 30.0% |
| !! | ATACAAAGCATTAACTTGCT+TGG | - | chr2_1:73090148-73090167 | None:intergenic | 30.0% |
| !! | CTGACCATGAAATTTGTTTT+GGG | + | chr2_1:73090346-73090365 | Msa0223510:three_prime_UTR | 30.0% |
| TTCTCCCAAAACAAATTTCA+TGG | - | chr2_1:73090353-73090372 | None:intergenic | 30.0% | |
| !! | TTTTGGGAGAATAAACTGAA+TGG | + | chr2_1:73090362-73090381 | Msa0223510:three_prime_UTR | 30.0% |
| TTTGGGAGAATAAACTGAAT+GGG | + | chr2_1:73090363-73090382 | Msa0223510:three_prime_UTR | 30.0% | |
| TCTTCATAGGTATTTCTCTT+TGG | + | chr2_1:73090398-73090417 | Msa0223510:three_prime_UTR | 30.0% | |
| AACCGAGAAAGAAAGAAAGA+AGG | + | chr2_1:73086802-73086821 | Msa0223510:five_prime_UTR | 35.0% | |
| GACCTTCTTTCTTTCTTTCT+CGG | - | chr2_1:73086807-73086826 | None:intergenic | 35.0% | |
| AGAAAGAAGGTCGAAATCAA+TGG | + | chr2_1:73086815-73086834 | Msa0223510:exon | 35.0% | |
| AAATCAATGGCGAATGCATT+AGG | + | chr2_1:73086828-73086847 | Msa0223510:exon | 35.0% | |
| GATGAAAGTGAAAGTGAAAG+TGG | - | chr2_1:73086895-73086914 | None:intergenic | 35.0% | |
| ! | TAGCTCAGTTTTTACCTAAC+TGG | + | chr2_1:73087006-73087025 | Msa0223510:CDS | 35.0% |
| ! | AGCTCAGTTTTTACCTAACT+GGG | + | chr2_1:73087007-73087026 | Msa0223510:CDS | 35.0% |
| ! | TTTTTACCTAACTGGGGAAT+CGG | + | chr2_1:73087014-73087033 | Msa0223510:CDS | 35.0% |
| ! | AACTTCCTTCCAATGAGTTT+TGG | - | chr2_1:73087051-73087070 | None:intergenic | 35.0% |
| AACCTTGTAGAGATTGAGTT+TGG | - | chr2_1:73087087-73087106 | None:intergenic | 35.0% | |
| ATGGAAAACATGGAAAAGCA+TGG | + | chr2_1:73087191-73087210 | Msa0223510:CDS | 35.0% | |
| ! | TGGAAAACATGGAAAAGCAT+GGG | + | chr2_1:73087192-73087211 | Msa0223510:CDS | 35.0% |
| !! | TGGGGTATTGCTCATAAAAA+TGG | + | chr2_1:73087211-73087230 | Msa0223510:CDS | 35.0% |
| !!! | AGAGCCTTGTTTTCACATTT+TGG | + | chr2_1:73087378-73087397 | Msa0223510:intron | 35.0% |
| !! | CTTATTTTCATATGCTCTCC+AGG | + | chr2_1:73087515-73087534 | Msa0223510:intron | 35.0% |
| ATTCAAAACCAAGCCTTAGT+GGG | + | chr2_1:73087660-73087679 | Msa0223510:intron | 35.0% | |
| !! | GGCTGATTTATCTTTTGTCA+TGG | + | chr2_1:73087847-73087866 | Msa0223510:intron | 35.0% |
| ACCTAAATCCAGATATTGCT+TGG | + | chr2_1:73088028-73088047 | Msa0223510:intron | 35.0% | |
| CCTAAATCCAGATATTGCTT+GGG | + | chr2_1:73088029-73088048 | Msa0223510:intron | 35.0% | |
| CTAAATCCAGATATTGCTTG+GGG | + | chr2_1:73088030-73088049 | Msa0223510:intron | 35.0% | |
| !! | TTTTATGTTTAAGGTGGTGG+TGG | + | chr2_1:73088307-73088326 | Msa0223510:intron | 35.0% |
| ! | GCTTTTGCTAGTGTATTAGA+TGG | + | chr2_1:73088635-73088654 | Msa0223510:intron | 35.0% |
| AGGATTGTAATCTTGAAGGA+TGG | + | chr2_1:73088884-73088903 | Msa0223510:intron | 35.0% | |
| ATCTTGAAGGATGGTATACT+AGG | + | chr2_1:73088893-73088912 | Msa0223510:intron | 35.0% | |
| TTATGAAATCCCCTTGTGTA+CGG | + | chr2_1:73089384-73089403 | Msa0223510:intron | 35.0% | |
| ATTTCAGCTTGACTTTAGGT+TGG | + | chr2_1:73089444-73089463 | Msa0223510:intron | 35.0% | |
| ! | TTTCAGCTTGACTTTAGGTT+GGG | + | chr2_1:73089445-73089464 | Msa0223510:intron | 35.0% |
| AGTCTACTGCTTTGATCAAA+TGG | - | chr2_1:73089565-73089584 | None:intergenic | 35.0% | |
| !! | GTACTACATCGTCATTTTCT+AGG | - | chr2_1:73089591-73089610 | None:intergenic | 35.0% |
| AGTGTGAAGTGTGTAAATGA+AGG | + | chr2_1:73089626-73089645 | Msa0223510:intron | 35.0% | |
| !!! | CTTTTTCAGCACTTATTCTC+TGG | + | chr2_1:73089953-73089972 | Msa0223510:intron | 35.0% |
| !! | TTTTTCGGAGCATCTACTAT+TGG | - | chr2_1:73090014-73090033 | None:intergenic | 35.0% |
| GATGCTCCGAAAAAAATTAG+TGG | + | chr2_1:73090020-73090039 | Msa0223510:CDS | 35.0% | |
| !! | AACTTTTAAGTCACTGTCTG+TGG | - | chr2_1:73090120-73090139 | None:intergenic | 35.0% |
| !! | ACAAAGCATTAACTTGCTTG+GGG | - | chr2_1:73090146-73090165 | None:intergenic | 35.0% |
| !! | CTTTGTATTGACTTTGGGTT+TGG | + | chr2_1:73090160-73090179 | Msa0223510:three_prime_UTR | 35.0% |
| ATACCTTTCGCATTCATGTA+AGG | + | chr2_1:73090281-73090300 | Msa0223510:three_prime_UTR | 35.0% | |
| AAACAAATTTCATGGTCAGG+AGG | - | chr2_1:73090345-73090364 | None:intergenic | 35.0% | |
| CCAAAACAAATTTCATGGTC+AGG | - | chr2_1:73090348-73090367 | None:intergenic | 35.0% | |
| !! | CCTGACCATGAAATTTGTTT+TGG | + | chr2_1:73090345-73090364 | Msa0223510:three_prime_UTR | 35.0% |
| CTTTCTTTCTTTCTCGGTTG+CGG | - | chr2_1:73086801-73086820 | None:intergenic | 40.0% | |
| AGATGGAGAAGAAGTGGAAA+GGG | - | chr2_1:73086922-73086941 | None:intergenic | 40.0% | |
| AAGATGGAGAAGAAGTGGAA+AGG | - | chr2_1:73086923-73086942 | None:intergenic | 40.0% | |
| ATCAGAAGATGGAGAAGAAG+TGG | - | chr2_1:73086928-73086947 | None:intergenic | 40.0% | |
| TTTCTTAGTAGCTTCGGAAG+CGG | - | chr2_1:73086952-73086971 | None:intergenic | 40.0% | |
| ! | GCTCAGTTTTTACCTAACTG+GGG | + | chr2_1:73087008-73087027 | Msa0223510:CDS | 40.0% |
| CACCAAACTCAATCTCTACA+AGG | + | chr2_1:73087082-73087101 | Msa0223510:CDS | 40.0% | |
| ! | CTTTTGCAGGATGGAAAACA+TGG | + | chr2_1:73087181-73087200 | Msa0223510:intron | 40.0% |
| ! | GGAAAACATGGAAAAGCATG+GGG | + | chr2_1:73087193-73087212 | Msa0223510:CDS | 40.0% |
| CATTCAAAACCAAGCCTTAG+TGG | + | chr2_1:73087659-73087678 | Msa0223510:intron | 40.0% | |
| AAGTTTATCCCACTAAGGCT+TGG | - | chr2_1:73087671-73087690 | None:intergenic | 40.0% | |
| TCTTTCATGCTACCTGTTTC+TGG | + | chr2_1:73087698-73087717 | Msa0223510:intron | 40.0% | |
| CCCAAGCAATATCTGGATTT+AGG | - | chr2_1:73088032-73088051 | None:intergenic | 40.0% | |
| ATATTGCTTGGGGTGGATAT+TGG | + | chr2_1:73088040-73088059 | Msa0223510:intron | 40.0% | |
| !! | AGTTTGATGGTGATCTCGTA+AGG | - | chr2_1:73088272-73088291 | None:intergenic | 40.0% |
| ! | GAACATTGAGTCACTTTCCT+AGG | + | chr2_1:73088407-73088426 | Msa0223510:intron | 40.0% |
| CGAATTTCTGATCCTTCCTT+GGG | - | chr2_1:73088853-73088872 | None:intergenic | 40.0% | |
| ACGAATTTCTGATCCTTCCT+TGG | - | chr2_1:73088854-73088873 | None:intergenic | 40.0% | |
| ATGGTATACTAGGATCTGTC+AGG | + | chr2_1:73088903-73088922 | Msa0223510:intron | 40.0% | |
| CAGATTTCTGATCCTTCCTT+GGG | - | chr2_1:73088984-73089003 | None:intergenic | 40.0% | |
| ACAGATTTCTGATCCTTCCT+TGG | - | chr2_1:73088985-73089004 | None:intergenic | 40.0% | |
| AGGAAGGATCAGAAATCTGT+CGG | + | chr2_1:73088985-73089004 | Msa0223510:intron | 40.0% | |
| ATGGTTGTAATCCTGAAGGA+TGG | + | chr2_1:73089044-73089063 | Msa0223510:intron | 40.0% | |
| ATCCTGAAGGATGGTATTCT+AGG | + | chr2_1:73089053-73089072 | Msa0223510:intron | 40.0% | |
| TACCTAGAATACCATCCTTC+AGG | - | chr2_1:73089058-73089077 | None:intergenic | 40.0% | |
| ! | ACTCAAGCTTAATGGATAGC+TGG | + | chr2_1:73089168-73089187 | Msa0223510:intron | 40.0% |
| ACTCACTATACCGTACACAA+GGG | - | chr2_1:73089397-73089416 | None:intergenic | 40.0% | |
| TACTCACTATACCGTACACA+AGG | - | chr2_1:73089398-73089417 | None:intergenic | 40.0% | |
| TAAAACTATTTCCCGGGAGT+GGG | - | chr2_1:73089494-73089513 | None:intergenic | 40.0% | |
| !! | TGAAGGTATTGCATATCAGC+AGG | + | chr2_1:73089643-73089662 | Msa0223510:intron | 40.0% |
| !! | GAAGGTATTGCATATCAGCA+GGG | + | chr2_1:73089644-73089663 | Msa0223510:intron | 40.0% |
| TTGCTTGTATGGAAGCTTAG+AGG | + | chr2_1:73089832-73089851 | Msa0223510:intron | 40.0% | |
| ! | CTGATGCTTTTACTACACCT+GGG | - | chr2_1:73090073-73090092 | None:intergenic | 40.0% |
| ! | TCTGATGCTTTTACTACACC+TGG | - | chr2_1:73090074-73090093 | None:intergenic | 40.0% |
| GAACCTTACATGAATGCGAA+AGG | - | chr2_1:73090287-73090306 | None:intergenic | 40.0% | |
| ACCACATGGCCAAAACTCAT+TGG | + | chr2_1:73087039-73087058 | Msa0223510:CDS | 45.0% | |
| !! | TCCAATGAGTTTTGGCCATG+TGG | - | chr2_1:73087043-73087062 | None:intergenic | 45.0% |
| CATGGCCAAAACTCATTGGA+AGG | + | chr2_1:73087043-73087062 | Msa0223510:CDS | 45.0% | |
| !! | TCATGCTACCTGTTTCTGGT+CGG | + | chr2_1:73087702-73087721 | Msa0223510:intron | 45.0% |
| !! | TACCTGTTTCTGGTCGGATT+TGG | + | chr2_1:73087708-73087727 | Msa0223510:intron | 45.0% |
| ATCCAAATCCGACCAGAAAC+AGG | - | chr2_1:73087713-73087732 | None:intergenic | 45.0% | |
| ACAAGCAAATCGCATGCATG+TGG | - | chr2_1:73087967-73087986 | None:intergenic | 45.0% | |
| AATCCAGATATTGCTTGGGG+TGG | + | chr2_1:73088033-73088052 | Msa0223510:intron | 45.0% | |
| TATCCACCCCAAGCAATATC+TGG | - | chr2_1:73088039-73088058 | None:intergenic | 45.0% | |
| !! | CTGGGTGTATTTTTGAGAGC+TGG | + | chr2_1:73088152-73088171 | Msa0223510:intron | 45.0% |
| ATGGTGATCTCGTAAGGTGA+AGG | - | chr2_1:73088266-73088285 | None:intergenic | 45.0% | |
| AAAACCATTCTGCACAGCCT+AGG | - | chr2_1:73088427-73088446 | None:intergenic | 45.0% | |
| ! | AGGCTGTGCAGAATGGTTTT+TGG | + | chr2_1:73088427-73088446 | Msa0223510:intron | 45.0% |
| TGTCAGGAGAGTAAATCCCA+AGG | + | chr2_1:73088919-73088938 | Msa0223510:intron | 45.0% | |
| GGAAGGATCAGAAATCTGTC+GGG | + | chr2_1:73088986-73089005 | Msa0223510:intron | 45.0% | |
| CTCACTATACCGTACACAAG+GGG | - | chr2_1:73089396-73089415 | None:intergenic | 45.0% | |
| CTAAAACTATTTCCCGGGAG+TGG | - | chr2_1:73089495-73089514 | None:intergenic | 45.0% | |
| ! | ATGCTTTTACTACACCTGGG+AGG | - | chr2_1:73090070-73090089 | None:intergenic | 45.0% |
| TCTGTGGAACTTGTCAAGGT+TGG | - | chr2_1:73090104-73090123 | None:intergenic | 45.0% | |
| ACTGTCTGTGGAACTTGTCA+AGG | - | chr2_1:73090108-73090127 | None:intergenic | 45.0% | |
| ! | TGGTAACCGATTCCCCAGTT+AGG | - | chr2_1:73087023-73087042 | None:intergenic | 50.0% |
| CTTTCCTAGGCTGTGCAGAA+TGG | + | chr2_1:73088420-73088439 | Msa0223510:intron | 50.0% | |
| GGAAGGGAGAGTAAATCCCA+AGG | + | chr2_1:73088834-73088853 | Msa0223510:intron | 50.0% | |
| GGGAGAGTAAATCCCAAGGA+AGG | + | chr2_1:73088838-73088857 | Msa0223510:intron | 50.0% | |
| GGAAGGGAGAGTAAATCCCA+AGG | + | chr2_1:73088834-73088853 | Msa0223510:intron | 50.0% | |
| GGGAGAGTAAATCCCAAGGA+AGG | + | chr2_1:73088838-73088857 | Msa0223510:intron | 50.0% | |
| GTTAGACAGGGACTTCGTCT+TGG | - | chr2_1:73089201-73089220 | None:intergenic | 50.0% | |
| AGGTTGGGTTCCTTCTGAGT+TGG | + | chr2_1:73089460-73089479 | Msa0223510:intron | 50.0% | |
| GGTGAGTTTGCCAACTCAGA+AGG | - | chr2_1:73089473-73089492 | None:intergenic | 50.0% | |
| ! | CAGCAGGGATTTTCCATGCA+CGG | + | chr2_1:73089659-73089678 | Msa0223510:intron | 50.0% |
| ! | GTGGAGTTCACAAGCGTTGT+TGG | + | chr2_1:73090039-73090058 | Msa0223510:CDS | 50.0% |
| ! | GAGTTCACAAGCGTTGTTGG+AGG | + | chr2_1:73090042-73090061 | Msa0223510:CDS | 50.0% |
| TCGGAAGCGGCATCAGAAGA+TGG | - | chr2_1:73086939-73086958 | None:intergenic | 55.0% | |
| CTGGGGAATCGGTTACCACA+TGG | + | chr2_1:73087025-73087044 | Msa0223510:CDS | 55.0% | |
| TTGGCAAACTCACCCACTCC+CGG | + | chr2_1:73089479-73089498 | Msa0223510:intron | 55.0% | |
| ! | AGGGATTTTCCATGCACGGC+AGG | + | chr2_1:73089663-73089682 | Msa0223510:intron | 55.0% |
| TGGCAAACTCACCCACTCCC+GGG | + | chr2_1:73089480-73089499 | Msa0223510:intron | 60.0% | |
| GTTCAAGCACCTGCCGTGCA+TGG | - | chr2_1:73089675-73089694 | None:intergenic | 60.0% | |
| !! | CGTTGTTGGAGGTACCTCCC+AGG | + | chr2_1:73090053-73090072 | Msa0223510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73086772 | 73090421 | 73086772 | ID=Msa0223510;Name=Msa0223510 |
| chr2_1 | mRNA | 73086772 | 73090421 | 73086772 | ID=Msa0223510-mRNA-1;Parent=Msa0223510;Name=Msa0223510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|1|1|3|264|154 |
| chr2_1 | exon | 73086772 | 73087103 | 73086772 | ID=Msa0223510-mRNA-1:exon:21311;Parent=Msa0223510-mRNA-1 |
| chr2_1 | exon | 73087190 | 73087232 | 73087190 | ID=Msa0223510-mRNA-1:exon:21312;Parent=Msa0223510-mRNA-1 |
| chr2_1 | exon | 73090006 | 73090421 | 73090006 | ID=Msa0223510-mRNA-1:exon:21313;Parent=Msa0223510-mRNA-1 |
| chr2_1 | five_prime_UTR | 73086772 | 73086833 | 73086772 | ID=Msa0223510-mRNA-1:five_prime_utr;Parent=Msa0223510-mRNA-1 |
| chr2_1 | CDS | 73086834 | 73087103 | 73086834 | ID=Msa0223510-mRNA-1:cds;Parent=Msa0223510-mRNA-1 |
| chr2_1 | CDS | 73087190 | 73087232 | 73087190 | ID=Msa0223510-mRNA-1:cds;Parent=Msa0223510-mRNA-1 |
| chr2_1 | CDS | 73090006 | 73090157 | 73090006 | ID=Msa0223510-mRNA-1:cds;Parent=Msa0223510-mRNA-1 |
| chr2_1 | three_prime_UTR | 73090158 | 73090421 | 73090158 | ID=Msa0223510-mRNA-1:three_prime_utr;Parent=Msa0223510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
