Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339960 | XP_003597419.1 | 90.909 | 154 | 12 | 1 | 1 | 152 | 1 | 154 | 5.25e-84 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223510 | Msa0339960 | 0.842256 | 2.890373e-58 | -8.615850e-47 |
| Msa0264570 | Msa0339960 | 0.864647 | 1.045750e-64 | -8.615850e-47 |
| Msa0295040 | Msa0339960 | 0.839846 | 1.240892e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339960 | MtrunA17_Chr2g0328751 | 90.909 | 154 | 12 | 1 | 1 | 152 | 1 | 154 | 4.83e-88 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339960 | AT5G52370.1 | 56.061 | 132 | 54 | 2 | 9 | 140 | 10 | 137 | 9.24e-46 | 146 |
| Msa0339960 | AT5G58990.1 | 69.048 | 84 | 26 | 0 | 53 | 136 | 59 | 142 | 3.65e-43 | 140 |
Find 44 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTCTCTTCACTCATTT+TGG | 0.107429 | 2_4:-61225660 | None:intergenic |
| CCTGACCATGAAATTTGTTT+TGG | 0.221543 | 2_4:-61221836 | Msa0339960:three_prime_UTR |
| GACCTTCTTTCTTTCTTTCT+CGG | 0.232940 | 2_4:+61225624 | None:intergenic |
| TCTTCATAGGTATTTCTCTT+TGG | 0.248862 | 2_4:-61221783 | Msa0339960:three_prime_UTR |
| CTTTGTATTGACTTTGGGTT+TGG | 0.289890 | 2_4:-61222021 | Msa0339960:three_prime_UTR |
| GTTTAATTCTCTTTCTTCAT+AGG | 0.294112 | 2_4:-61221796 | Msa0339960:three_prime_UTR |
| TTCTCCCAAAACAAATTTCA+TGG | 0.294163 | 2_4:+61221831 | None:intergenic |
| TACAAAGCATTAACTTGCTT+GGG | 0.302226 | 2_4:+61222037 | None:intergenic |
| AACTTCCTTCCAATGAGTTT+TGG | 0.309432 | 2_4:+61225386 | None:intergenic |
| TAATGCTTTGTATTGACTTT+GGG | 0.341936 | 2_4:-61222026 | Msa0339960:three_prime_UTR |
| AACCTTGTAGAGATTGAGTT+TGG | 0.370445 | 2_4:+61225350 | None:intergenic |
| TTAATGCTTTGTATTGACTT+TGG | 0.391640 | 2_4:-61222027 | Msa0339960:exon |
| CTTTCTTTCTTTCTCGGTTG+CGG | 0.399286 | 2_4:+61225630 | None:intergenic |
| GTGGAGTTCACAAGCGTTGT+TGG | 0.404726 | 2_4:-61222142 | Msa0339960:CDS |
| AAATCAATGGCGAATGCATT+AGG | 0.413021 | 2_4:-61225600 | Msa0339960:exon |
| CTTTGATTTCTTAGTAGCTT+CGG | 0.416628 | 2_4:+61225479 | None:intergenic |
| ATACAAAGCATTAACTTGCT+TGG | 0.423842 | 2_4:+61222036 | None:intergenic |
| CCAAAACAAATTTCATGGTC+AGG | 0.438794 | 2_4:+61221836 | None:intergenic |
| ATACCTTTCGCATTCATGTA+AGG | 0.451489 | 2_4:-61221900 | Msa0339960:three_prime_UTR |
| AGATGGAGAAGAAGTGGAAA+GGG | 0.459353 | 2_4:+61225515 | None:intergenic |
| TTTGGGAGAATAAACTGAAT+GGG | 0.470019 | 2_4:-61221818 | Msa0339960:three_prime_UTR |
| TGGTAACCGATTCCCCAGTT+AGG | 0.472104 | 2_4:+61225414 | None:intergenic |
| GGTTCTGATGAAAGTGAAAG+TGG | 0.474945 | 2_4:+61225536 | None:intergenic |
| ACCACATGGCCAAAACTCAT+TGG | 0.495437 | 2_4:-61225395 | Msa0339960:CDS |
| CACCAAACTCAATCTCTACA+AGG | 0.521765 | 2_4:-61225352 | Msa0339960:intron |
| TGCAAAACATGGAAAAGCAT+GGG | 0.524761 | 2_4:-61225239 | Msa0339960:CDS |
| AGAAAGAAGGTCGAAATCAA+TGG | 0.528228 | 2_4:-61225613 | Msa0339960:exon |
| TCGGAAGCGGCATCAGAAGA+TGG | 0.536957 | 2_4:+61225498 | None:intergenic |
| AAGATGGAGAAGAAGTGGAA+AGG | 0.544670 | 2_4:+61225514 | None:intergenic |
| CGTTGTTGGAGGTACCTCCC+AGG | 0.564766 | 2_4:-61222128 | Msa0339960:CDS |
| ATGCAAAACATGGAAAAGCA+TGG | 0.570040 | 2_4:-61225240 | Msa0339960:CDS |
| TTTCTTAGTAGCTTCGGAAG+CGG | 0.572868 | 2_4:+61225485 | None:intergenic |
| ACAAAGCATTAACTTGCTTG+GGG | 0.578946 | 2_4:+61222038 | None:intergenic |
| CATGGCCAAAACTCATTGGA+AGG | 0.579589 | 2_4:-61225391 | Msa0339960:CDS |
| AACCGAGAAAGAAAGAAAGA+AGG | 0.587990 | 2_4:-61225626 | Msa0339960:five_prime_UTR |
| ACTGTCTGTGGAACTTGTCA+AGG | 0.589263 | 2_4:+61222076 | None:intergenic |
| GAGTTCACAAGCGTTGTTGG+AGG | 0.593322 | 2_4:-61222139 | Msa0339960:CDS |
| TCTGTGGAACTTGTCAAGGT+TGG | 0.598044 | 2_4:+61222080 | None:intergenic |
| ATCAGAAGATGGAGAAGAAG+TGG | 0.602316 | 2_4:+61225509 | None:intergenic |
| CTGGGGAATCGGTTACCACA+TGG | 0.607209 | 2_4:-61225409 | Msa0339960:CDS |
| GAACCTTACATGAATGCGAA+AGG | 0.624925 | 2_4:+61221897 | None:intergenic |
| AAACAAATTTCATGGTCAGG+AGG | 0.646633 | 2_4:+61221839 | None:intergenic |
| AAAATCTAATCTAAGACACA+AGG | 0.680620 | 2_4:+61221977 | None:intergenic |
| GCAAAACATGGAAAAGCATG+GGG | 0.690856 | 2_4:-61225238 | Msa0339960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTTTTTTTTGC+AGG | - | chr2_4:61222175-61222194 | Msa0339960:CDS | 10.0% |
| !!! | TTAGTTTTTAATTTTTCAAA+TGG | - | chr2_4:61222241-61222260 | Msa0339960:intron | 10.0% |
| !!! | TAGTTTTTAATTTTTCAAAT+GGG | - | chr2_4:61222242-61222261 | Msa0339960:intron | 10.0% |
| !!! | TTTAAAGAATTTAAAATTCT+AGG | + | chr2_4:61222554-61222573 | None:intergenic | 10.0% |
| !! | CATATATAAAAAAATTAAAG+GGG | + | chr2_4:61224246-61224265 | None:intergenic | 10.0% |
| !! | CCATATATAAAAAAATTAAA+GGG | + | chr2_4:61224247-61224266 | None:intergenic | 10.0% |
| !! | ACCATATATAAAAAAATTAA+AGG | + | chr2_4:61224248-61224267 | None:intergenic | 10.0% |
| !!! | AATAAAATAATTTTATCTAC+AGG | + | chr2_4:61224585-61224604 | None:intergenic | 10.0% |
| !! | TAAAATTGTAAGATAATATG+AGG | + | chr2_4:61223299-61223318 | None:intergenic | 15.0% |
| !!! | TTGAATCATTTTTATGTTTA+AGG | - | chr2_4:61223518-61223537 | Msa0339960:intron | 15.0% |
| !!! | TATTAAATAAAGCAGATTTT+GGG | + | chr2_4:61223553-61223572 | None:intergenic | 15.0% |
| !!! | ATATTAAATAAAGCAGATTT+TGG | + | chr2_4:61223554-61223573 | None:intergenic | 15.0% |
| !!! | ATGTTTAAAAGTATGTTTAT+TGG | - | chr2_4:61223886-61223905 | Msa0339960:intron | 15.0% |
| !! | AAATTTATAATTTCTGTTGA+GGG | - | chr2_4:61224000-61224019 | Msa0339960:intron | 15.0% |
| !!! | CCCTTTAATTTTTTTATATA+TGG | - | chr2_4:61224244-61224263 | Msa0339960:intron | 15.0% |
| !! | TATGTTATATCAAATTCACT+TGG | - | chr2_4:61222361-61222380 | Msa0339960:intron | 20.0% |
| !!! | AACTTAAAGTTTAAAACAGA+AGG | + | chr2_4:61223041-61223060 | None:intergenic | 20.0% |
| !!! | TTTAAACTTTAAGTTCATCA+TGG | - | chr2_4:61223046-61223065 | Msa0339960:intron | 20.0% |
| !! | ATCTTGGTTTATCATATAAA+AGG | - | chr2_4:61223108-61223127 | Msa0339960:intron | 20.0% |
| !!! | AATCATTTTTATGTTTAAGG+TGG | - | chr2_4:61223521-61223540 | Msa0339960:intron | 20.0% |
| !! | TTAAAAAGTCCCTTAAAAAA+GGG | + | chr2_4:61223701-61223720 | None:intergenic | 20.0% |
| !! | AAAATACTATATCGAACATT+TGG | + | chr2_4:61223915-61223934 | None:intergenic | 20.0% |
| !! | GAAATTTATAATTTCTGTTG+AGG | - | chr2_4:61223999-61224018 | Msa0339960:intron | 20.0% |
| !!! | AAAGACCATATAATTTTACA+TGG | + | chr2_4:61225000-61225019 | None:intergenic | 20.0% |
| !!! | AATTTGTTCTAGCAATAATT+TGG | - | chr2_4:61225111-61225130 | Msa0339960:intron | 20.0% |
| !!! | TTCAAATGGGTTTATTTTTC+TGG | - | chr2_4:61222255-61222274 | Msa0339960:intron | 25.0% |
| ! | AACTGTTTGATAAATGTTGT+AGG | - | chr2_4:61222297-61222316 | Msa0339960:intron | 25.0% |
| !! | AGTCATGTATTTGATGATTT+AGG | - | chr2_4:61222639-61222658 | Msa0339960:intron | 25.0% |
| !! | GTCATGTATTTGATGATTTA+GGG | - | chr2_4:61222640-61222659 | Msa0339960:intron | 25.0% |
| !! | AAGCATTTGCTACATTATTT+AGG | - | chr2_4:61222666-61222685 | Msa0339960:intron | 25.0% |
| ! | AGCTTATAACATAAACACTT+AGG | + | chr2_4:61222844-61222863 | None:intergenic | 25.0% |
| ! | ATTTGGATGTTAATATCTCT+AGG | - | chr2_4:61222945-61222964 | Msa0339960:intron | 25.0% |
| !! | GTGCAACATATATGAAATTT+TGG | + | chr2_4:61222981-61223000 | None:intergenic | 25.0% |
| !!! | TTATTTGGTTTGCTTAATCT+TGG | - | chr2_4:61223092-61223111 | Msa0339960:intron | 25.0% |
| !!! | TTGCTTGTTATATTCTTGTT+AGG | - | chr2_4:61223199-61223218 | Msa0339960:intron | 25.0% |
| !!! | TGCTTGTTATATTCTTGTTA+GGG | - | chr2_4:61223200-61223219 | Msa0339960:intron | 25.0% |
| !! | ATTTAAGGTGATAATCTACT+GGG | + | chr2_4:61223439-61223458 | None:intergenic | 25.0% |
| ! | AAGCATAAACATCTCATTTA+AGG | + | chr2_4:61223454-61223473 | None:intergenic | 25.0% |
| ! | TAAATGAGATGTTTATGCTT+AGG | - | chr2_4:61223454-61223473 | Msa0339960:intron | 25.0% |
| !! | TTCTACTGATAATGACTATA+TGG | + | chr2_4:61223582-61223601 | None:intergenic | 25.0% |
| ! | TAAAAAGTCCCTTAAAAAAG+GGG | + | chr2_4:61223700-61223719 | None:intergenic | 25.0% |
| ! | GTTAAAAAGTCCCTTAAAAA+AGG | + | chr2_4:61223702-61223721 | None:intergenic | 25.0% |
| !! | TTTAACTTATGACAAGATGT+AGG | - | chr2_4:61223716-61223735 | Msa0339960:intron | 25.0% |
| ! | TTAACTTATGACAAGATGTA+GGG | - | chr2_4:61223717-61223736 | Msa0339960:intron | 25.0% |
| ! | AAAGTAATTGCATTCATTTC+TGG | - | chr2_4:61223779-61223798 | Msa0339960:intron | 25.0% |
| ! | GCATATGTTTAATAGAAAGA+AGG | - | chr2_4:61224032-61224051 | Msa0339960:intron | 25.0% |
| ! | ATGTTTAATAGAAAGAAGGA+AGG | - | chr2_4:61224036-61224055 | Msa0339960:intron | 25.0% |
| ! | TGTTTAATAGAAAGAAGGAA+GGG | - | chr2_4:61224037-61224056 | Msa0339960:intron | 25.0% |
| ! | AGAAATTCGTCTAAATAGAA+AGG | - | chr2_4:61224083-61224102 | Msa0339960:intron | 25.0% |
| ! | TATTAAACATATGCTTCCTT+GGG | + | chr2_4:61224157-61224176 | None:intergenic | 25.0% |
| ! | GCATATGTTTAATAGAAAGA+AGG | - | chr2_4:61224032-61224051 | Msa0339960:intron | 25.0% |
| ! | ATGTTTAATAGAAAGAAGGA+AGG | - | chr2_4:61224036-61224055 | Msa0339960:intron | 25.0% |
| ! | TGTTTAATAGAAAGAAGGAA+GGG | - | chr2_4:61224037-61224056 | Msa0339960:intron | 25.0% |
| ! | TAAAAAAATTAAAGGGGTTC+TGG | + | chr2_4:61224240-61224259 | None:intergenic | 25.0% |
| ! | TTGAAAATACTCAAGCTTAA+TGG | - | chr2_4:61224379-61224398 | Msa0339960:intron | 25.0% |
| !!! | ATACAAAAGTTTGTTAGACA+GGG | + | chr2_4:61224432-61224451 | None:intergenic | 25.0% |
| !!! | AATACAAAAGTTTGTTAGAC+AGG | + | chr2_4:61224433-61224452 | None:intergenic | 25.0% |
| ! | AATAGCTTTCTACATGAAAA+TGG | + | chr2_4:61224486-61224505 | None:intergenic | 25.0% |
| ! | GAAATACACTTGCATTATAA+TGG | - | chr2_4:61224525-61224544 | Msa0339960:intron | 25.0% |
| !!! | TGCATTATAATGGATCTTTT+TGG | - | chr2_4:61224535-61224554 | Msa0339960:intron | 25.0% |
| !!! | GCATTATAATGGATCTTTTT+GGG | - | chr2_4:61224536-61224555 | Msa0339960:intron | 25.0% |
| !! | TGAAATCTAAAACTATTTCC+CGG | + | chr2_4:61224720-61224739 | None:intergenic | 25.0% |
| !!! | AGTTTTAGATTTCAAAGTAC+AGG | - | chr2_4:61224726-61224745 | Msa0339960:intron | 25.0% |
| !!! | GTTTTAGATTTCAAAGTACA+GGG | - | chr2_4:61224727-61224746 | Msa0339960:intron | 25.0% |
| !! | ATTTTCAATCATAACTGATG+TGG | + | chr2_4:61224759-61224778 | None:intergenic | 25.0% |
| ! | ATACTTTCAATCTTTGTATG+AGG | - | chr2_4:61224940-61224959 | Msa0339960:intron | 25.0% |
| !!! | TACAATGCACACTTTATTTT+TGG | + | chr2_4:61225181-61225200 | None:intergenic | 25.0% |
| !!! | TGAACTCCACTAATTTTTTT+CGG | + | chr2_4:61225286-61225305 | None:intergenic | 25.0% |
| !!! | TTAATGCTTTGTATTGACTT+TGG | - | chr2_4:61225411-61225430 | Msa0339960:CDS | 25.0% |
| !!! | TAATGCTTTGTATTGACTTT+GGG | - | chr2_4:61225412-61225431 | Msa0339960:CDS | 25.0% |
| !! | AAAATCTAATCTAAGACACA+AGG | + | chr2_4:61225464-61225483 | None:intergenic | 25.0% |
| !! | TCTTAGATTAGATTTTCAAC+TGG | - | chr2_4:61225468-61225487 | Msa0339960:CDS | 25.0% |
| ! | GTTTAATTCTCTTTCTTCAT+AGG | - | chr2_4:61225642-61225661 | Msa0339960:five_prime_UTR | 25.0% |
| !!! | GTTTTGAAGAGTGTTGATTT+TGG | + | chr2_4:61221866-61221885 | None:intergenic | 30.0% |
| ! | CTTTGATTTCTTAGTAGCTT+CGG | + | chr2_4:61221962-61221981 | None:intergenic | 30.0% |
| TTGAGGTGAATTTCATTGTT+TGG | - | chr2_4:61222457-61222476 | Msa0339960:intron | 30.0% | |
| GTGAATTTCATTGTTTGGAT+GGG | - | chr2_4:61222462-61222481 | Msa0339960:intron | 30.0% | |
| TGAATTTCATTGTTTGGATG+GGG | - | chr2_4:61222463-61222482 | Msa0339960:intron | 30.0% | |
| TCAGGAAATGTAATGTTATG+AGG | - | chr2_4:61222502-61222521 | Msa0339960:intron | 30.0% | |
| CAGGAAATGTAATGTTATGA+GGG | - | chr2_4:61222503-61222522 | Msa0339960:intron | 30.0% | |
| !!! | ACACTCTAGTTTTCACATTT+TGG | - | chr2_4:61222598-61222617 | Msa0339960:intron | 30.0% |
| !!! | TCACATTTTGGAGTAAAAGT+TGG | - | chr2_4:61222610-61222629 | Msa0339960:intron | 30.0% |
| !! | GCTATTTTCATAAACTATCC+TGG | + | chr2_4:61222756-61222775 | None:intergenic | 30.0% |
| ! | AGTTTAAGTTTATCCCACTA+AGG | + | chr2_4:61222896-61222915 | None:intergenic | 30.0% |
| !!! | GCACTTATTTTATCACACAA+TGG | + | chr2_4:61223016-61223035 | None:intergenic | 30.0% |
| !!! | TCTTTTGTCATGGTCTTATT+TGG | - | chr2_4:61223077-61223096 | Msa0339960:intron | 30.0% |
| CCATAAAGAAAGAACAACAA+AGG | + | chr2_4:61223138-61223157 | None:intergenic | 30.0% | |
| !! | CCTTTGTTGTTCTTTCTTTA+TGG | - | chr2_4:61223135-61223154 | Msa0339960:intron | 30.0% |
| !! | GCTTGTTATATTCTTGTTAG+GGG | - | chr2_4:61223201-61223220 | Msa0339960:intron | 30.0% |
| TGTTAATGAAAGAATGAAGC+TGG | - | chr2_4:61223353-61223372 | Msa0339960:intron | 30.0% | |
| GTTAATGAAAGAATGAAGCT+GGG | - | chr2_4:61223354-61223373 | Msa0339960:intron | 30.0% | |
| ! | TTTTCAATACGCAAGTTTGA+CGG | + | chr2_4:61223400-61223419 | None:intergenic | 30.0% |
| ! | AATCTACTGGGTTCTATTTT+TGG | + | chr2_4:61223427-61223446 | None:intergenic | 30.0% |
| ! | CATTTAAGGTGATAATCTAC+TGG | + | chr2_4:61223440-61223459 | None:intergenic | 30.0% |
| GATTCAATAAGCAAGTTTGA+TGG | + | chr2_4:61223505-61223524 | None:intergenic | 30.0% | |
| !! | CATTTTTATGTTTAAGGTGG+TGG | - | chr2_4:61223524-61223543 | Msa0339960:intron | 30.0% |
| !!! | AACATAGAACCCCTTTTTTA+AGG | - | chr2_4:61223688-61223707 | Msa0339960:intron | 30.0% |
| !!! | ACATAGAACCCCTTTTTTAA+GGG | - | chr2_4:61223689-61223708 | Msa0339960:intron | 30.0% |
| !!! | GGTTTTGTTATAAAACGTGT+TGG | - | chr2_4:61223800-61223819 | Msa0339960:intron | 30.0% |
| CTTAGTAGAACATTCTAACA+AGG | + | chr2_4:61223950-61223969 | None:intergenic | 30.0% | |
| AGAAAGGATTGTAATCTTGA+AGG | - | chr2_4:61224099-61224118 | Msa0339960:intron | 30.0% | |
| CTATTAAACATATGCTTCCT+TGG | + | chr2_4:61224158-61224177 | None:intergenic | 30.0% | |
| ATATATGGTTGTAATCCTGA+AGG | - | chr2_4:61224259-61224278 | Msa0339960:intron | 30.0% | |
| TATTCTAGGTATTACTAGCA+AGG | - | chr2_4:61224286-61224305 | Msa0339960:intron | 30.0% | |
| TACTAGCAAGGATTGTAATT+TGG | - | chr2_4:61224298-61224317 | Msa0339960:intron | 30.0% | |
| TATGCATGTTTATGTTACCT+TGG | - | chr2_4:61224325-61224344 | Msa0339960:intron | 30.0% | |
| TGCACTCAAATAAAATTCCA+AGG | + | chr2_4:61224345-61224364 | None:intergenic | 30.0% | |
| !! | TCTTTTTGGGCTAACTATTT+TGG | - | chr2_4:61224549-61224568 | Msa0339960:intron | 30.0% |
| TCATATTTCAGCTTGACTTT+AGG | - | chr2_4:61224659-61224678 | Msa0339960:intron | 30.0% | |
| ! | GAAATCTAAAACTATTTCCC+GGG | + | chr2_4:61224719-61224738 | None:intergenic | 30.0% |
| !! | GTCAACATTGTCTTTTTCAT+TGG | - | chr2_4:61224962-61224981 | Msa0339960:intron | 30.0% |
| GTGCTCCATGTAAAATTATA+TGG | - | chr2_4:61224992-61225011 | Msa0339960:intron | 30.0% | |
| !! | AATTGTATGTGTTGCTTGTA+TGG | - | chr2_4:61225050-61225069 | Msa0339960:intron | 30.0% |
| GATATCATGTAAATTGTTGC+AGG | - | chr2_4:61225241-61225260 | Msa0339960:CDS | 30.0% | |
| !! | TACAAAGCATTAACTTGCTT+GGG | + | chr2_4:61225404-61225423 | None:intergenic | 30.0% |
| !! | ATACAAAGCATTAACTTGCT+TGG | + | chr2_4:61225405-61225424 | None:intergenic | 30.0% |
| !! | CTGACCATGAAATTTGTTTT+GGG | - | chr2_4:61225603-61225622 | Msa0339960:exon | 30.0% |
| TTCTCCCAAAACAAATTTCA+TGG | + | chr2_4:61225610-61225629 | None:intergenic | 30.0% | |
| !! | TTTTGGGAGAATAAACTGAA+TGG | - | chr2_4:61225619-61225638 | Msa0339960:five_prime_UTR | 30.0% |
| TTTGGGAGAATAAACTGAAT+GGG | - | chr2_4:61225620-61225639 | Msa0339960:five_prime_UTR | 30.0% | |
| TCTTCATAGGTATTTCTCTT+TGG | - | chr2_4:61225655-61225674 | Msa0339960:five_prime_UTR | 30.0% | |
| AACCGAGAAAGAAAGAAAGA+AGG | - | chr2_4:61221812-61221831 | Msa0339960:three_prime_UTR | 35.0% | |
| GACCTTCTTTCTTTCTTTCT+CGG | + | chr2_4:61221817-61221836 | None:intergenic | 35.0% | |
| AGAAAGAAGGTCGAAATCAA+TGG | - | chr2_4:61221825-61221844 | Msa0339960:three_prime_UTR | 35.0% | |
| AAATCAATGGCGAATGCATT+AGG | - | chr2_4:61221838-61221857 | Msa0339960:three_prime_UTR | 35.0% | |
| ! | TAGCTCAGTTTTTACCTAAC+TGG | - | chr2_4:61222010-61222029 | Msa0339960:three_prime_UTR | 35.0% |
| ! | AGCTCAGTTTTTACCTAACT+GGG | - | chr2_4:61222011-61222030 | Msa0339960:three_prime_UTR | 35.0% |
| ! | TTTTTACCTAACTGGGGAAT+CGG | - | chr2_4:61222018-61222037 | Msa0339960:three_prime_UTR | 35.0% |
| ! | AACTTCCTTCCAATGAGTTT+TGG | + | chr2_4:61222055-61222074 | None:intergenic | 35.0% |
| AACCTTGTAGAGATTGAGTT+TGG | + | chr2_4:61222091-61222110 | None:intergenic | 35.0% | |
| ! | TTTTTGCAGGATGCAAAACA+TGG | - | chr2_4:61222188-61222207 | Msa0339960:intron | 35.0% |
| ATGCAAAACATGGAAAAGCA+TGG | - | chr2_4:61222198-61222217 | Msa0339960:intron | 35.0% | |
| ! | TGCAAAACATGGAAAAGCAT+GGG | - | chr2_4:61222199-61222218 | Msa0339960:intron | 35.0% |
| !! | TGGGGTATTGCTCATAAAAA+TGG | - | chr2_4:61222218-61222237 | Msa0339960:intron | 35.0% |
| TGAGGGAATGTAATGTTATG+AGG | - | chr2_4:61222421-61222440 | Msa0339960:intron | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr2_4:61222422-61222441 | Msa0339960:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr2_4:61222440-61222459 | Msa0339960:intron | 35.0% | |
| GGTGAATTTCATTGTTTGGA+TGG | - | chr2_4:61222461-61222480 | Msa0339960:intron | 35.0% | |
| GAATTTCATTGTTTGGATGG+GGG | - | chr2_4:61222464-61222483 | Msa0339960:intron | 35.0% | |
| GGGAATGTAATGTAATGTTC+AGG | - | chr2_4:61222484-61222503 | Msa0339960:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr2_4:61222440-61222459 | Msa0339960:intron | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr2_4:61222581-61222600 | None:intergenic | 35.0% | |
| TGTGAAAACTAGAGTGTGTT+TGG | + | chr2_4:61222595-61222614 | None:intergenic | 35.0% | |
| !! | CTTATTTTCATATGCTCTCC+AGG | - | chr2_4:61222735-61222754 | Msa0339960:intron | 35.0% |
| ATTCAAAACCAAGCCTTAGT+GGG | - | chr2_4:61222880-61222899 | Msa0339960:intron | 35.0% | |
| !! | GGCTGATTTATCTTTTGTCA+TGG | - | chr2_4:61223067-61223086 | Msa0339960:intron | 35.0% |
| ACCTAAATCCAGATATTGCT+TGG | - | chr2_4:61223248-61223267 | Msa0339960:intron | 35.0% | |
| CCTAAATCCAGATATTGCTT+GGG | - | chr2_4:61223249-61223268 | Msa0339960:intron | 35.0% | |
| CTAAATCCAGATATTGCTTG+GGG | - | chr2_4:61223250-61223269 | Msa0339960:intron | 35.0% | |
| !! | TTTTATGTTTAAGGTGGTGG+TGG | - | chr2_4:61223527-61223546 | Msa0339960:intron | 35.0% |
| ! | GCTTTTGCTAGTGTATTAGA+TGG | - | chr2_4:61223854-61223873 | Msa0339960:intron | 35.0% |
| AGGATTGTAATCTTGAAGGA+TGG | - | chr2_4:61224103-61224122 | Msa0339960:intron | 35.0% | |
| ATCTTGAAGGATGGTATACT+AGG | - | chr2_4:61224112-61224131 | Msa0339960:intron | 35.0% | |
| TTATGAAATCCCCTTGTGTA+CGG | - | chr2_4:61224603-61224622 | Msa0339960:intron | 35.0% | |
| ATTTCAGCTTGACTTTAGGT+TGG | - | chr2_4:61224663-61224682 | Msa0339960:intron | 35.0% | |
| ! | TTTCAGCTTGACTTTAGGTT+GGG | - | chr2_4:61224664-61224683 | Msa0339960:intron | 35.0% |
| AGTCTACTGCTTTGATCAAA+TGG | + | chr2_4:61224784-61224803 | None:intergenic | 35.0% | |
| !! | GTACTACATCGTCATTTTCT+AGG | + | chr2_4:61224810-61224829 | None:intergenic | 35.0% |
| AGTGTGAAGTGTGTAAATGA+AGG | - | chr2_4:61224845-61224864 | Msa0339960:intron | 35.0% | |
| TTTCCATGCAAGTGGTATTA+CGG | - | chr2_4:61224888-61224907 | Msa0339960:intron | 35.0% | |
| !!! | CTTTTTCAGCACTTATTCTC+TGG | - | chr2_4:61225210-61225229 | Msa0339960:intron | 35.0% |
| !! | TTTTTCGGAGCATCTACTAT+TGG | + | chr2_4:61225271-61225290 | None:intergenic | 35.0% |
| GATGCTCCGAAAAAAATTAG+TGG | - | chr2_4:61225277-61225296 | Msa0339960:intron | 35.0% | |
| !! | AACTTTTAAGTCACTGTCTG+TGG | + | chr2_4:61225377-61225396 | None:intergenic | 35.0% |
| !! | ACAAAGCATTAACTTGCTTG+GGG | + | chr2_4:61225403-61225422 | None:intergenic | 35.0% |
| !! | CTTTGTATTGACTTTGGGTT+TGG | - | chr2_4:61225417-61225436 | Msa0339960:CDS | 35.0% |
| ATACCTTTCGCATTCATGTA+AGG | - | chr2_4:61225538-61225557 | Msa0339960:CDS | 35.0% | |
| AAACAAATTTCATGGTCAGG+AGG | + | chr2_4:61225602-61225621 | None:intergenic | 35.0% | |
| CCAAAACAAATTTCATGGTC+AGG | + | chr2_4:61225605-61225624 | None:intergenic | 35.0% | |
| !! | CCTGACCATGAAATTTGTTT+TGG | - | chr2_4:61225602-61225621 | Msa0339960:exon | 35.0% |
| CTTTCTTTCTTTCTCGGTTG+CGG | + | chr2_4:61221811-61221830 | None:intergenic | 40.0% | |
| ! | GGTTCTGATGAAAGTGAAAG+TGG | + | chr2_4:61221905-61221924 | None:intergenic | 40.0% |
| AGATGGAGAAGAAGTGGAAA+GGG | + | chr2_4:61221926-61221945 | None:intergenic | 40.0% | |
| AAGATGGAGAAGAAGTGGAA+AGG | + | chr2_4:61221927-61221946 | None:intergenic | 40.0% | |
| ATCAGAAGATGGAGAAGAAG+TGG | + | chr2_4:61221932-61221951 | None:intergenic | 40.0% | |
| TTTCTTAGTAGCTTCGGAAG+CGG | + | chr2_4:61221956-61221975 | None:intergenic | 40.0% | |
| ! | GCTCAGTTTTTACCTAACTG+GGG | - | chr2_4:61222012-61222031 | Msa0339960:three_prime_UTR | 40.0% |
| CACCAAACTCAATCTCTACA+AGG | - | chr2_4:61222086-61222105 | Msa0339960:CDS | 40.0% | |
| ! | GCAAAACATGGAAAAGCATG+GGG | - | chr2_4:61222200-61222219 | Msa0339960:intron | 40.0% |
| TAAGAGCCTTAGAGTGTGTT+TGG | - | chr2_4:61222384-61222403 | Msa0339960:intron | 40.0% | |
| AACTAGAGTGTGTTTGGATG+AGG | + | chr2_4:61222589-61222608 | None:intergenic | 40.0% | |
| CATTCAAAACCAAGCCTTAG+TGG | - | chr2_4:61222879-61222898 | Msa0339960:intron | 40.0% | |
| AAGTTTATCCCACTAAGGCT+TGG | + | chr2_4:61222891-61222910 | None:intergenic | 40.0% | |
| TCTTTCATGCTACCTGTTTC+TGG | - | chr2_4:61222918-61222937 | Msa0339960:intron | 40.0% | |
| CCCAAGCAATATCTGGATTT+AGG | + | chr2_4:61223252-61223271 | None:intergenic | 40.0% | |
| ATATTGCTTGGGGTGGATAT+TGG | - | chr2_4:61223260-61223279 | Msa0339960:intron | 40.0% | |
| !! | AGTTTGATGGTGATCTCGTA+AGG | + | chr2_4:61223492-61223511 | None:intergenic | 40.0% |
| ! | GAACATTGAGTCACTTTCCT+AGG | - | chr2_4:61223627-61223646 | Msa0339960:intron | 40.0% |
| CGAATTTCTGATCCTTCCTT+GGG | + | chr2_4:61224072-61224091 | None:intergenic | 40.0% | |
| ACGAATTTCTGATCCTTCCT+TGG | + | chr2_4:61224073-61224092 | None:intergenic | 40.0% | |
| ATGGTATACTAGGATCTGTC+AGG | - | chr2_4:61224122-61224141 | Msa0339960:intron | 40.0% | |
| CAGATTTCTGATCCTTCCTT+GGG | + | chr2_4:61224203-61224222 | None:intergenic | 40.0% | |
| ACAGATTTCTGATCCTTCCT+TGG | + | chr2_4:61224204-61224223 | None:intergenic | 40.0% | |
| AGGAAGGATCAGAAATCTGT+CGG | - | chr2_4:61224204-61224223 | Msa0339960:intron | 40.0% | |
| ATGGTTGTAATCCTGAAGGA+TGG | - | chr2_4:61224263-61224282 | Msa0339960:intron | 40.0% | |
| ATCCTGAAGGATGGTATTCT+AGG | - | chr2_4:61224272-61224291 | Msa0339960:intron | 40.0% | |
| TACCTAGAATACCATCCTTC+AGG | + | chr2_4:61224277-61224296 | None:intergenic | 40.0% | |
| ! | ACTCAAGCTTAATGGATAGC+TGG | - | chr2_4:61224387-61224406 | Msa0339960:intron | 40.0% |
| ACTCACTATACCGTACACAA+GGG | + | chr2_4:61224616-61224635 | None:intergenic | 40.0% | |
| TACTCACTATACCGTACACA+AGG | + | chr2_4:61224617-61224636 | None:intergenic | 40.0% | |
| TAAAACTATTTCCCGGGAGT+GGG | + | chr2_4:61224713-61224732 | None:intergenic | 40.0% | |
| !! | TGAAGGTATTGCATATCAGC+AGG | - | chr2_4:61224862-61224881 | Msa0339960:intron | 40.0% |
| !! | GAAGGTATTGCATATCAGCA+GGG | - | chr2_4:61224863-61224882 | Msa0339960:intron | 40.0% |
| TTGCTTGTATGGAAGCTTAG+AGG | - | chr2_4:61225061-61225080 | Msa0339960:intron | 40.0% | |
| ! | CTGATGCTTTTACTACACCT+GGG | + | chr2_4:61225330-61225349 | None:intergenic | 40.0% |
| ! | TCTGATGCTTTTACTACACC+TGG | + | chr2_4:61225331-61225350 | None:intergenic | 40.0% |
| GAACCTTACATGAATGCGAA+AGG | + | chr2_4:61225544-61225563 | None:intergenic | 40.0% | |
| ACCACATGGCCAAAACTCAT+TGG | - | chr2_4:61222043-61222062 | Msa0339960:exon | 45.0% | |
| !! | TCCAATGAGTTTTGGCCATG+TGG | + | chr2_4:61222047-61222066 | None:intergenic | 45.0% |
| CATGGCCAAAACTCATTGGA+AGG | - | chr2_4:61222047-61222066 | Msa0339960:CDS | 45.0% | |
| CCTTAGAGTGTGTTTGGATG+CGG | - | chr2_4:61222390-61222409 | Msa0339960:intron | 45.0% | |
| CTTAGAGTGTGTTTGGATGC+GGG | - | chr2_4:61222391-61222410 | Msa0339960:intron | 45.0% | |
| ! | TTGGATGCGGGAATGTTTTG+AGG | - | chr2_4:61222403-61222422 | Msa0339960:intron | 45.0% |
| !! | TGGATGCGGGAATGTTTTGA+GGG | - | chr2_4:61222404-61222423 | Msa0339960:intron | 45.0% |
| !! | TCATGCTACCTGTTTCTGGT+CGG | - | chr2_4:61222922-61222941 | Msa0339960:intron | 45.0% |
| !! | TACCTGTTTCTGGTCGGATT+TGG | - | chr2_4:61222928-61222947 | Msa0339960:intron | 45.0% |
| ATCCAAATCCGACCAGAAAC+AGG | + | chr2_4:61222933-61222952 | None:intergenic | 45.0% | |
| ACAAGCAAATCGCATGCATG+TGG | + | chr2_4:61223187-61223206 | None:intergenic | 45.0% | |
| AATCCAGATATTGCTTGGGG+TGG | - | chr2_4:61223253-61223272 | Msa0339960:intron | 45.0% | |
| TATCCACCCCAAGCAATATC+TGG | + | chr2_4:61223259-61223278 | None:intergenic | 45.0% | |
| !! | CTGGGTGTATTTTTGAGAGC+TGG | - | chr2_4:61223372-61223391 | Msa0339960:intron | 45.0% |
| ATGGTGATCTCGTAAGGTGA+AGG | + | chr2_4:61223486-61223505 | None:intergenic | 45.0% | |
| AAAACCATTCTGCACAGCCT+AGG | + | chr2_4:61223647-61223666 | None:intergenic | 45.0% | |
| ! | AGGCTGTGCAGAATGGTTTT+TGG | - | chr2_4:61223647-61223666 | Msa0339960:intron | 45.0% |
| TGTCAGGAGAGTAAATCCCA+AGG | - | chr2_4:61224138-61224157 | Msa0339960:intron | 45.0% | |
| GGAAGGATCAGAAATCTGTC+GGG | - | chr2_4:61224205-61224224 | Msa0339960:intron | 45.0% | |
| CTCACTATACCGTACACAAG+GGG | + | chr2_4:61224615-61224634 | None:intergenic | 45.0% | |
| CTAAAACTATTTCCCGGGAG+TGG | + | chr2_4:61224714-61224733 | None:intergenic | 45.0% | |
| ! | ATGCTTTTACTACACCTGGG+AGG | + | chr2_4:61225327-61225346 | None:intergenic | 45.0% |
| TCTGTGGAACTTGTCAAGGT+TGG | + | chr2_4:61225361-61225380 | None:intergenic | 45.0% | |
| ACTGTCTGTGGAACTTGTCA+AGG | + | chr2_4:61225365-61225384 | None:intergenic | 45.0% | |
| ! | TGGTAACCGATTCCCCAGTT+AGG | + | chr2_4:61222027-61222046 | None:intergenic | 50.0% |
| CCGCATCCAAACACACTCTA+AGG | + | chr2_4:61222393-61222412 | None:intergenic | 50.0% | |
| CTTTCCTAGGCTGTGCAGAA+TGG | - | chr2_4:61223640-61223659 | Msa0339960:intron | 50.0% | |
| GGAAGGGAGAGTAAATCCCA+AGG | - | chr2_4:61224053-61224072 | Msa0339960:intron | 50.0% | |
| GGGAGAGTAAATCCCAAGGA+AGG | - | chr2_4:61224057-61224076 | Msa0339960:intron | 50.0% | |
| GGAAGGGAGAGTAAATCCCA+AGG | - | chr2_4:61224053-61224072 | Msa0339960:intron | 50.0% | |
| GGGAGAGTAAATCCCAAGGA+AGG | - | chr2_4:61224057-61224076 | Msa0339960:intron | 50.0% | |
| GTTAGACAGGGACTTCGTCT+TGG | + | chr2_4:61224420-61224439 | None:intergenic | 50.0% | |
| AGGTTGGGTTCCTTCTGAGT+TGG | - | chr2_4:61224679-61224698 | Msa0339960:intron | 50.0% | |
| GGTGAGTTTGCCAACTCAGA+AGG | + | chr2_4:61224692-61224711 | None:intergenic | 50.0% | |
| ! | GCAGGGATTTTCCATGCAAG+TGG | - | chr2_4:61224880-61224899 | Msa0339960:intron | 50.0% |
| CTGCCGTAATACCACTTGCA+TGG | + | chr2_4:61224894-61224913 | None:intergenic | 50.0% | |
| CATGCAAGTGGTATTACGGC+AGG | - | chr2_4:61224892-61224911 | Msa0339960:intron | 50.0% | |
| ! | GTGGAGTTCACAAGCGTTGT+TGG | - | chr2_4:61225296-61225315 | Msa0339960:intron | 50.0% |
| ! | GAGTTCACAAGCGTTGTTGG+AGG | - | chr2_4:61225299-61225318 | Msa0339960:intron | 50.0% |
| TCGGAAGCGGCATCAGAAGA+TGG | + | chr2_4:61221943-61221962 | None:intergenic | 55.0% | |
| CTGGGGAATCGGTTACCACA+TGG | - | chr2_4:61222029-61222048 | Msa0339960:exon | 55.0% | |
| TTGGCAAACTCACCCACTCC+CGG | - | chr2_4:61224698-61224717 | Msa0339960:intron | 55.0% | |
| TGGCAAACTCACCCACTCCC+GGG | - | chr2_4:61224699-61224718 | Msa0339960:intron | 60.0% | |
| !! | CGTTGTTGGAGGTACCTCCC+AGG | - | chr2_4:61225310-61225329 | Msa0339960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61221782 | 61225678 | 61221782 | ID=Msa0339960;Name=Msa0339960 |
| chr2_4 | mRNA | 61221782 | 61225678 | 61221782 | ID=Msa0339960-mRNA-1;Parent=Msa0339960;Name=Msa0339960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62|1|1|1|1|1|3|264|152 |
| chr2_4 | exon | 61221782 | 61222197 | 61221782 | ID=Msa0339960-mRNA-1:exon:19180;Parent=Msa0339960-mRNA-1 |
| chr2_4 | exon | 61225221 | 61225263 | 61225221 | ID=Msa0339960-mRNA-1:exon:19179;Parent=Msa0339960-mRNA-1 |
| chr2_4 | exon | 61225353 | 61225678 | 61225353 | ID=Msa0339960-mRNA-1:exon:19178;Parent=Msa0339960-mRNA-1 |
| chr2_4 | five_prime_UTR | 61225617 | 61225678 | 61225617 | ID=Msa0339960-mRNA-1:five_prime_utr;Parent=Msa0339960-mRNA-1 |
| chr2_4 | CDS | 61225353 | 61225616 | 61225353 | ID=Msa0339960-mRNA-1:cds;Parent=Msa0339960-mRNA-1 |
| chr2_4 | CDS | 61225221 | 61225263 | 61225221 | ID=Msa0339960-mRNA-1:cds;Parent=Msa0339960-mRNA-1 |
| chr2_4 | CDS | 61222046 | 61222197 | 61222046 | ID=Msa0339960-mRNA-1:cds;Parent=Msa0339960-mRNA-1 |
| chr2_4 | three_prime_UTR | 61221782 | 61222045 | 61221782 | ID=Msa0339960-mRNA-1:three_prime_utr;Parent=Msa0339960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
