Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295040 | XP_003597419.1 | 90.385 | 156 | 11 | 2 | 1 | 154 | 1 | 154 | 8.63e-83 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295040 | G7IRZ7 | 90.385 | 156 | 11 | 2 | 1 | 154 | 1 | 154 | 4.12e-83 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223510 | Msa0295040 | 0.977169 | 3.025682e-143 | -8.615850e-47 |
| Msa0295040 | Msa0339960 | 0.839846 | 1.240892e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295040 | MtrunA17_Chr2g0328751 | 90.385 | 156 | 11 | 2 | 1 | 154 | 1 | 154 | 7.94e-87 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295040 | AT5G52370.1 | 56.934 | 137 | 51 | 2 | 11 | 142 | 4 | 137 | 9.30e-47 | 149 |
| Msa0295040 | AT5G58990.1 | 70.238 | 84 | 25 | 0 | 55 | 138 | 59 | 142 | 5.82e-44 | 142 |
Find 44 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTCTCTTCACTCATTT+TGG | 0.107429 | 2_3:+47271382 | None:intergenic |
| CCTGACCATGAAATTTGTTT+TGG | 0.221543 | 2_3:+47274958 | Msa0295040:three_prime_UTR |
| GACCTTCTTTCTTTCTTTCT+CGG | 0.232940 | 2_3:-47271418 | None:intergenic |
| TCTTCATAGGTATTTCTCTT+TGG | 0.248862 | 2_3:+47275009 | Msa0295040:three_prime_UTR |
| GGGTTTAATTCTTTCTTCAT+AGG | 0.286805 | 2_3:+47274996 | Msa0295040:three_prime_UTR |
| CTTTGTATTGACTTTGGGTT+TGG | 0.289890 | 2_3:+47274773 | Msa0295040:three_prime_UTR |
| TTCTCCCAAAACAAATTTCA+TGG | 0.294163 | 2_3:-47274963 | None:intergenic |
| TACAAAGCATTAACTTGCTT+GGG | 0.302226 | 2_3:-47274757 | None:intergenic |
| AACTTCCTTCCAATGAGTTT+TGG | 0.309432 | 2_3:-47271662 | None:intergenic |
| TAATGCTTTGTATTGACTTT+GGG | 0.341936 | 2_3:+47274768 | Msa0295040:exon |
| AACCTTGTAGAGATTGAGTT+TGG | 0.370445 | 2_3:-47271698 | None:intergenic |
| TTAATGCTTTGTATTGACTT+TGG | 0.391640 | 2_3:+47274767 | Msa0295040:exon |
| CTTTCTTTCTTTCTCGGTTG+CGG | 0.399286 | 2_3:-47271412 | None:intergenic |
| GTGGAGTTCACAAGCGTTGT+TGG | 0.404726 | 2_3:+47274652 | Msa0295040:CDS |
| AAATCAATGGCGAATGCATT+AGG | 0.413021 | 2_3:+47271442 | Msa0295040:exon |
| CTTTGATTTCTTAGTAGCTT+CGG | 0.416628 | 2_3:-47271569 | None:intergenic |
| ATACAAAGCATTAACTTGCT+TGG | 0.423842 | 2_3:-47274758 | None:intergenic |
| CCAAAACAAATTTCATGGTC+AGG | 0.438794 | 2_3:-47274958 | None:intergenic |
| ATACCTTTCGCATTCATGTA+AGG | 0.451489 | 2_3:+47274894 | Msa0295040:three_prime_UTR |
| AGATGGAGAAGAAGTGGAAA+GGG | 0.459353 | 2_3:-47271533 | None:intergenic |
| GATGAAAGTGAAAGTGAAAG+TGG | 0.464963 | 2_3:-47271506 | None:intergenic |
| TTTGGGAGAATAAACTGAAT+GGG | 0.470019 | 2_3:+47274976 | Msa0295040:three_prime_UTR |
| TGGTAACCGATTCCCCAGTT+AGG | 0.472104 | 2_3:-47271634 | None:intergenic |
| ACCACATGGCCAAAACTCAT+TGG | 0.495437 | 2_3:+47271653 | Msa0295040:CDS |
| CACCAAACTCAATCTCTACA+AGG | 0.521765 | 2_3:+47271696 | Msa0295040:CDS |
| AGAAAGAAGGTCGAAATCAA+TGG | 0.528228 | 2_3:+47271429 | Msa0295040:exon |
| TCGGAAGCGGCATCAGAAGA+TGG | 0.536957 | 2_3:-47271550 | None:intergenic |
| AAGATGGAGAAGAAGTGGAA+AGG | 0.544670 | 2_3:-47271534 | None:intergenic |
| TGGAAAACATGGAAAAGCAT+GGG | 0.563870 | 2_3:+47271806 | Msa0295040:CDS |
| CGTTGTTGGAGGTACCTCCC+AGG | 0.564766 | 2_3:+47274666 | Msa0295040:CDS |
| TTTCTTAGTAGCTTCGGAAG+CGG | 0.572868 | 2_3:-47271563 | None:intergenic |
| ACAAAGCATTAACTTGCTTG+GGG | 0.578946 | 2_3:-47274756 | None:intergenic |
| CATGGCCAAAACTCATTGGA+AGG | 0.579589 | 2_3:+47271657 | Msa0295040:CDS |
| AACCGAGAAAGAAAGAAAGA+AGG | 0.587990 | 2_3:+47271416 | Msa0295040:five_prime_UTR |
| ACTGTCTGTGGAACTTGTCA+AGG | 0.589263 | 2_3:-47274718 | None:intergenic |
| ATGGAAAACATGGAAAAGCA+TGG | 0.589492 | 2_3:+47271805 | Msa0295040:CDS |
| GAGTTCACAAGCGTTGTTGG+AGG | 0.593322 | 2_3:+47274655 | Msa0295040:CDS |
| TCTGTGGAACTTGTCAAGGT+TGG | 0.598044 | 2_3:-47274714 | None:intergenic |
| ATCAGAAGATGGAGAAGAAG+TGG | 0.602316 | 2_3:-47271539 | None:intergenic |
| CTGGGGAATCGGTTACCACA+TGG | 0.607209 | 2_3:+47271639 | Msa0295040:CDS |
| GAACCTTACATGAATGCGAA+AGG | 0.624925 | 2_3:-47274897 | None:intergenic |
| AAACAAATTTCATGGTCAGG+AGG | 0.646633 | 2_3:-47274955 | None:intergenic |
| AAAATCTAATCTAAGACACA+AGG | 0.680620 | 2_3:-47274817 | None:intergenic |
| GGAAAACATGGAAAAGCATG+GGG | 0.695615 | 2_3:+47271807 | Msa0295040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTAATTTTTCAAAT+GGG | + | chr2_3:47271848-47271867 | Msa0295040:intron | 10.0% |
| !! | CATATATAAAAAAATTAAAG+GGG | - | chr2_3:47273640-47273659 | None:intergenic | 10.0% |
| !! | CCATATATAAAAAAATTAAA+GGG | - | chr2_3:47273641-47273660 | None:intergenic | 10.0% |
| !! | ACCATATATAAAAAAATTAA+AGG | - | chr2_3:47273642-47273661 | None:intergenic | 10.0% |
| !!! | AATAAAATAATTTTATCTAC+AGG | - | chr2_3:47273979-47273998 | None:intergenic | 10.0% |
| !!! | TTTATATTTTTTTCTTTTGC+AGG | + | chr2_3:47271782-47271801 | Msa0295040:intron | 15.0% |
| !!! | GTTAGTTTTAATTTTTCAAA+TGG | + | chr2_3:47271847-47271866 | Msa0295040:intron | 15.0% |
| !! | TAAAATTGTAAGATAATATG+AGG | - | chr2_3:47272693-47272712 | None:intergenic | 15.0% |
| !!! | TTGAATCATTTTTATGTTTA+AGG | + | chr2_3:47272912-47272931 | Msa0295040:intron | 15.0% |
| !!! | TATTAAATAAAGCAGATTTT+GGG | - | chr2_3:47272947-47272966 | None:intergenic | 15.0% |
| !!! | ATATTAAATAAAGCAGATTT+TGG | - | chr2_3:47272948-47272967 | None:intergenic | 15.0% |
| !!! | ATGTTTAAAAGTATGTTTAT+TGG | + | chr2_3:47273280-47273299 | Msa0295040:intron | 15.0% |
| !! | AAATTTATAATTTCTGTTGA+GGG | + | chr2_3:47273394-47273413 | Msa0295040:intron | 15.0% |
| !!! | CCCTTTAATTTTTTTATATA+TGG | + | chr2_3:47273638-47273657 | Msa0295040:intron | 15.0% |
| !! | TATGTTATATCAAATTCACT+TGG | + | chr2_3:47271967-47271986 | Msa0295040:intron | 20.0% |
| !!! | AACTTAAAGTTTAAAACAGA+AGG | - | chr2_3:47272435-47272454 | None:intergenic | 20.0% |
| !!! | TTTAAACTTTAAGTTCATCA+TGG | + | chr2_3:47272440-47272459 | Msa0295040:intron | 20.0% |
| !! | ATCTTGGTTTATCATATAAA+AGG | + | chr2_3:47272502-47272521 | Msa0295040:intron | 20.0% |
| !!! | AATCATTTTTATGTTTAAGG+TGG | + | chr2_3:47272915-47272934 | Msa0295040:intron | 20.0% |
| !! | TTAAAAAGTCCCTAAAAAAA+GGG | - | chr2_3:47273095-47273114 | None:intergenic | 20.0% |
| !! | AAAATACTATATCGAACATT+TGG | - | chr2_3:47273309-47273328 | None:intergenic | 20.0% |
| !! | GAAATTTATAATTTCTGTTG+AGG | + | chr2_3:47273393-47273412 | Msa0295040:intron | 20.0% |
| !!! | AAAGACCATATAATTTTACA+TGG | - | chr2_3:47274384-47274403 | None:intergenic | 20.0% |
| !!! | AATTTGTTCTAGCAATAATT+TGG | + | chr2_3:47274495-47274514 | Msa0295040:intron | 20.0% |
| !!! | TATTTTTTTCTTTTGCAGGA+TGG | + | chr2_3:47271786-47271805 | Msa0295040:intron | 25.0% |
| !!! | TTCAAATGGGTTTATTTTTC+TGG | + | chr2_3:47271861-47271880 | Msa0295040:intron | 25.0% |
| ! | AACTGTTTGATAAATGTTGT+AGG | + | chr2_3:47271903-47271922 | Msa0295040:intron | 25.0% |
| !! | AGTCATGTATTTGATGATTT+AGG | + | chr2_3:47272033-47272052 | Msa0295040:intron | 25.0% |
| !! | GTCATGTATTTGATGATTTA+GGG | + | chr2_3:47272034-47272053 | Msa0295040:intron | 25.0% |
| !! | AAGCATTTGCTACATTATTT+AGG | + | chr2_3:47272060-47272079 | Msa0295040:intron | 25.0% |
| ! | AGCTTATAACATAAACACTT+AGG | - | chr2_3:47272238-47272257 | None:intergenic | 25.0% |
| ! | ATTTGGATGTTAATATCTCT+AGG | + | chr2_3:47272339-47272358 | Msa0295040:intron | 25.0% |
| !! | GTGCAACATATATGAAATTT+TGG | - | chr2_3:47272375-47272394 | None:intergenic | 25.0% |
| !!! | TTATTTGGTTTGCTTAATCT+TGG | + | chr2_3:47272486-47272505 | Msa0295040:intron | 25.0% |
| !!! | TTGCTTGTTATATTCTTGTT+AGG | + | chr2_3:47272593-47272612 | Msa0295040:intron | 25.0% |
| !!! | TGCTTGTTATATTCTTGTTA+GGG | + | chr2_3:47272594-47272613 | Msa0295040:intron | 25.0% |
| !! | ATTTAAGGTGATAATCTACT+GGG | - | chr2_3:47272833-47272852 | None:intergenic | 25.0% |
| ! | AAGCATAAACATCTCATTTA+AGG | - | chr2_3:47272848-47272867 | None:intergenic | 25.0% |
| ! | TAAATGAGATGTTTATGCTT+AGG | + | chr2_3:47272848-47272867 | Msa0295040:intron | 25.0% |
| !! | TTCTACTGATAATGACTATA+TGG | - | chr2_3:47272976-47272995 | None:intergenic | 25.0% |
| ! | TAAAAAGTCCCTAAAAAAAG+GGG | - | chr2_3:47273094-47273113 | None:intergenic | 25.0% |
| ! | GTTAAAAAGTCCCTAAAAAA+AGG | - | chr2_3:47273096-47273115 | None:intergenic | 25.0% |
| !! | TTTAACTTATGACAAGATGT+AGG | + | chr2_3:47273110-47273129 | Msa0295040:intron | 25.0% |
| ! | TTAACTTATGACAAGATGTA+GGG | + | chr2_3:47273111-47273130 | Msa0295040:intron | 25.0% |
| ! | AAAGTAATTGCATTCATTTC+TGG | + | chr2_3:47273173-47273192 | Msa0295040:intron | 25.0% |
| ! | GCATATGTTTAATAGAAAGA+AGG | + | chr2_3:47273426-47273445 | Msa0295040:intron | 25.0% |
| ! | ATGTTTAATAGAAAGAAGGA+AGG | + | chr2_3:47273430-47273449 | Msa0295040:intron | 25.0% |
| ! | TGTTTAATAGAAAGAAGGAA+GGG | + | chr2_3:47273431-47273450 | Msa0295040:intron | 25.0% |
| ! | AGAAATTCGTCTAAATAGAA+AGG | + | chr2_3:47273477-47273496 | Msa0295040:intron | 25.0% |
| ! | TATTAAACATATGCTTCCTT+GGG | - | chr2_3:47273551-47273570 | None:intergenic | 25.0% |
| ! | GCATATGTTTAATAGAAAGA+AGG | + | chr2_3:47273426-47273445 | Msa0295040:intron | 25.0% |
| ! | ATGTTTAATAGAAAGAAGGA+AGG | + | chr2_3:47273430-47273449 | Msa0295040:intron | 25.0% |
| ! | TGTTTAATAGAAAGAAGGAA+GGG | + | chr2_3:47273431-47273450 | Msa0295040:intron | 25.0% |
| ! | TAAAAAAATTAAAGGGGTTC+TGG | - | chr2_3:47273634-47273653 | None:intergenic | 25.0% |
| ! | TTGAAAATACTCAAGCTTAA+TGG | + | chr2_3:47273773-47273792 | Msa0295040:intron | 25.0% |
| !!! | ATACAAAAGTTTGTTAGACA+GGG | - | chr2_3:47273826-47273845 | None:intergenic | 25.0% |
| !!! | AATACAAAAGTTTGTTAGAC+AGG | - | chr2_3:47273827-47273846 | None:intergenic | 25.0% |
| ! | AATAGCTTTCTACATGAAAA+TGG | - | chr2_3:47273880-47273899 | None:intergenic | 25.0% |
| ! | GAAATACACTTGCATTATAA+TGG | + | chr2_3:47273919-47273938 | Msa0295040:intron | 25.0% |
| !!! | TGCATTATAATGGATCTTTT+TGG | + | chr2_3:47273929-47273948 | Msa0295040:intron | 25.0% |
| !!! | GCATTATAATGGATCTTTTT+GGG | + | chr2_3:47273930-47273949 | Msa0295040:intron | 25.0% |
| !! | TGAAATCTAAAACTATTTCC+CGG | - | chr2_3:47274114-47274133 | None:intergenic | 25.0% |
| !!! | AGTTTTAGATTTCAAAGTAC+AGG | + | chr2_3:47274120-47274139 | Msa0295040:intron | 25.0% |
| !!! | GTTTTAGATTTCAAAGTACA+GGG | + | chr2_3:47274121-47274140 | Msa0295040:intron | 25.0% |
| !! | ATTTTCAATCATAACTGATG+TGG | - | chr2_3:47274153-47274172 | None:intergenic | 25.0% |
| ! | ATACTTTCAATCTTTGTATG+AGG | + | chr2_3:47274324-47274343 | Msa0295040:intron | 25.0% |
| !!! | TACAATGCACACTTTATTTT+TGG | - | chr2_3:47274537-47274556 | None:intergenic | 25.0% |
| !!! | TGAACTCCACTAATTTTTTT+CGG | - | chr2_3:47274642-47274661 | None:intergenic | 25.0% |
| !!! | TTAATGCTTTGTATTGACTT+TGG | + | chr2_3:47274767-47274786 | Msa0295040:exon | 25.0% |
| !!! | TAATGCTTTGTATTGACTTT+GGG | + | chr2_3:47274768-47274787 | Msa0295040:exon | 25.0% |
| !! | AAAATCTAATCTAAGACACA+AGG | - | chr2_3:47274820-47274839 | None:intergenic | 25.0% |
| !! | TCTTAGATTAGATTTTCAAC+TGG | + | chr2_3:47274824-47274843 | Msa0295040:three_prime_UTR | 25.0% |
| !!! | GTTTTGAAGAGTGTTGATTT+TGG | - | chr2_3:47271470-47271489 | None:intergenic | 30.0% |
| ! | CTTTGATTTCTTAGTAGCTT+CGG | - | chr2_3:47271572-47271591 | None:intergenic | 30.0% |
| TACTCCAAAATGTGAAAACA+AGG | - | chr2_3:47271999-47272018 | None:intergenic | 30.0% | |
| !!! | TCACATTTTGGAGTAAAAGT+TGG | + | chr2_3:47272004-47272023 | Msa0295040:intron | 30.0% |
| !! | GCTATTTTCATAAACTATCC+TGG | - | chr2_3:47272150-47272169 | None:intergenic | 30.0% |
| ! | AGTTTAAGTTTATCCCACTA+AGG | - | chr2_3:47272290-47272309 | None:intergenic | 30.0% |
| !!! | GCACTTATTTTATCACACAA+TGG | - | chr2_3:47272410-47272429 | None:intergenic | 30.0% |
| !!! | TCTTTTGTCATGGTCTTATT+TGG | + | chr2_3:47272471-47272490 | Msa0295040:intron | 30.0% |
| CCATAAAGAAAGAACAACAA+AGG | - | chr2_3:47272532-47272551 | None:intergenic | 30.0% | |
| !! | CCTTTGTTGTTCTTTCTTTA+TGG | + | chr2_3:47272529-47272548 | Msa0295040:intron | 30.0% |
| !! | GCTTGTTATATTCTTGTTAG+GGG | + | chr2_3:47272595-47272614 | Msa0295040:intron | 30.0% |
| TGTTAATGAAAGAATGAAGC+TGG | + | chr2_3:47272747-47272766 | Msa0295040:intron | 30.0% | |
| GTTAATGAAAGAATGAAGCT+GGG | + | chr2_3:47272748-47272767 | Msa0295040:intron | 30.0% | |
| ! | TTTTCAATACGCAAGTTTGA+CGG | - | chr2_3:47272794-47272813 | None:intergenic | 30.0% |
| ! | AATCTACTGGGTTCTATTTT+TGG | - | chr2_3:47272821-47272840 | None:intergenic | 30.0% |
| ! | CATTTAAGGTGATAATCTAC+TGG | - | chr2_3:47272834-47272853 | None:intergenic | 30.0% |
| GATTCAATAAGCAAGTTTGA+TGG | - | chr2_3:47272899-47272918 | None:intergenic | 30.0% | |
| !! | CATTTTTATGTTTAAGGTGG+TGG | + | chr2_3:47272918-47272937 | Msa0295040:intron | 30.0% |
| !!! | AACATAGAACCCCTTTTTTT+AGG | + | chr2_3:47273082-47273101 | Msa0295040:intron | 30.0% |
| !!! | ACATAGAACCCCTTTTTTTA+GGG | + | chr2_3:47273083-47273102 | Msa0295040:intron | 30.0% |
| !!! | GGTTTTGTTATAAAACGTGT+TGG | + | chr2_3:47273194-47273213 | Msa0295040:intron | 30.0% |
| CTTAGTAGAACATTCTAACA+AGG | - | chr2_3:47273344-47273363 | None:intergenic | 30.0% | |
| AGAAAGGATTGTAATCTTGA+AGG | + | chr2_3:47273493-47273512 | Msa0295040:intron | 30.0% | |
| CTATTAAACATATGCTTCCT+TGG | - | chr2_3:47273552-47273571 | None:intergenic | 30.0% | |
| ATATATGGTTGTAATCCTGA+AGG | + | chr2_3:47273653-47273672 | Msa0295040:intron | 30.0% | |
| TATTCTAGGTATTACTAGCA+AGG | + | chr2_3:47273680-47273699 | Msa0295040:intron | 30.0% | |
| TACTAGCAAGGATTGTAATT+TGG | + | chr2_3:47273692-47273711 | Msa0295040:intron | 30.0% | |
| TATGCATGTTTATGTTACCT+TGG | + | chr2_3:47273719-47273738 | Msa0295040:intron | 30.0% | |
| TGCACTCAAATAAAATTCCA+AGG | - | chr2_3:47273739-47273758 | None:intergenic | 30.0% | |
| !! | TCTTTTTGGGCTAACTATTT+TGG | + | chr2_3:47273943-47273962 | Msa0295040:intron | 30.0% |
| TCATATTTCAGCTTGACTTT+AGG | + | chr2_3:47274053-47274072 | Msa0295040:intron | 30.0% | |
| ! | GAAATCTAAAACTATTTCCC+GGG | - | chr2_3:47274113-47274132 | None:intergenic | 30.0% |
| !! | GTCAACATTGTCTTTTTCAT+TGG | + | chr2_3:47274346-47274365 | Msa0295040:intron | 30.0% |
| GTGCTCCATGTAAAATTATA+TGG | + | chr2_3:47274376-47274395 | Msa0295040:intron | 30.0% | |
| !! | AATTGTATGTGTTGCTTGTA+TGG | + | chr2_3:47274434-47274453 | Msa0295040:intron | 30.0% |
| GATATCATGTAAATTGTTGC+AGG | + | chr2_3:47274597-47274616 | Msa0295040:intron | 30.0% | |
| !! | TACAAAGCATTAACTTGCTT+GGG | - | chr2_3:47274760-47274779 | None:intergenic | 30.0% |
| !! | ATACAAAGCATTAACTTGCT+TGG | - | chr2_3:47274761-47274780 | None:intergenic | 30.0% |
| !! | CTGACCATGAAATTTGTTTT+GGG | + | chr2_3:47274959-47274978 | Msa0295040:three_prime_UTR | 30.0% |
| TTCTCCCAAAACAAATTTCA+TGG | - | chr2_3:47274966-47274985 | None:intergenic | 30.0% | |
| !! | TTTTGGGAGAATAAACTGAA+TGG | + | chr2_3:47274975-47274994 | Msa0295040:three_prime_UTR | 30.0% |
| TTTGGGAGAATAAACTGAAT+GGG | + | chr2_3:47274976-47274995 | Msa0295040:three_prime_UTR | 30.0% | |
| GGGTTTAATTCTTTCTTCAT+AGG | + | chr2_3:47274996-47275015 | Msa0295040:three_prime_UTR | 30.0% | |
| TCTTCATAGGTATTTCTCTT+TGG | + | chr2_3:47275009-47275028 | Msa0295040:three_prime_UTR | 30.0% | |
| AACCGAGAAAGAAAGAAAGA+AGG | + | chr2_3:47271416-47271435 | Msa0295040:five_prime_UTR | 35.0% | |
| GACCTTCTTTCTTTCTTTCT+CGG | - | chr2_3:47271421-47271440 | None:intergenic | 35.0% | |
| AGAAAGAAGGTCGAAATCAA+TGG | + | chr2_3:47271429-47271448 | Msa0295040:exon | 35.0% | |
| AAATCAATGGCGAATGCATT+AGG | + | chr2_3:47271442-47271461 | Msa0295040:exon | 35.0% | |
| GATGAAAGTGAAAGTGAAAG+TGG | - | chr2_3:47271509-47271528 | None:intergenic | 35.0% | |
| ! | TAGCTCAGTTTTTACCTAAC+TGG | + | chr2_3:47271620-47271639 | Msa0295040:CDS | 35.0% |
| ! | AGCTCAGTTTTTACCTAACT+GGG | + | chr2_3:47271621-47271640 | Msa0295040:CDS | 35.0% |
| ! | TTTTTACCTAACTGGGGAAT+CGG | + | chr2_3:47271628-47271647 | Msa0295040:CDS | 35.0% |
| ! | AACTTCCTTCCAATGAGTTT+TGG | - | chr2_3:47271665-47271684 | None:intergenic | 35.0% |
| AACCTTGTAGAGATTGAGTT+TGG | - | chr2_3:47271701-47271720 | None:intergenic | 35.0% | |
| ATGGAAAACATGGAAAAGCA+TGG | + | chr2_3:47271805-47271824 | Msa0295040:CDS | 35.0% | |
| ! | TGGAAAACATGGAAAAGCAT+GGG | + | chr2_3:47271806-47271825 | Msa0295040:CDS | 35.0% |
| !! | TGGGGTATTGCTCATAAAAA+TGG | + | chr2_3:47271825-47271844 | Msa0295040:CDS | 35.0% |
| !!! | AGAGCCTTGTTTTCACATTT+TGG | + | chr2_3:47271992-47272011 | Msa0295040:intron | 35.0% |
| !! | CTTATTTTCATATGCTCTCC+AGG | + | chr2_3:47272129-47272148 | Msa0295040:intron | 35.0% |
| ATTCAAAACCAAGCCTTAGT+GGG | + | chr2_3:47272274-47272293 | Msa0295040:intron | 35.0% | |
| !! | GGCTGATTTATCTTTTGTCA+TGG | + | chr2_3:47272461-47272480 | Msa0295040:intron | 35.0% |
| ACCTAAATCCAGATATTGCT+TGG | + | chr2_3:47272642-47272661 | Msa0295040:intron | 35.0% | |
| CCTAAATCCAGATATTGCTT+GGG | + | chr2_3:47272643-47272662 | Msa0295040:intron | 35.0% | |
| CTAAATCCAGATATTGCTTG+GGG | + | chr2_3:47272644-47272663 | Msa0295040:intron | 35.0% | |
| !! | TTTTATGTTTAAGGTGGTGG+TGG | + | chr2_3:47272921-47272940 | Msa0295040:intron | 35.0% |
| ! | GCTTTTGCTAGTGTATTAGA+TGG | + | chr2_3:47273248-47273267 | Msa0295040:intron | 35.0% |
| AGGATTGTAATCTTGAAGGA+TGG | + | chr2_3:47273497-47273516 | Msa0295040:intron | 35.0% | |
| ATCTTGAAGGATGGTATACT+AGG | + | chr2_3:47273506-47273525 | Msa0295040:intron | 35.0% | |
| TTATGAAATCCCCTTGTGTA+CGG | + | chr2_3:47273997-47274016 | Msa0295040:intron | 35.0% | |
| ATTTCAGCTTGACTTTAGGT+TGG | + | chr2_3:47274057-47274076 | Msa0295040:intron | 35.0% | |
| ! | TTTCAGCTTGACTTTAGGTT+GGG | + | chr2_3:47274058-47274077 | Msa0295040:intron | 35.0% |
| AGTCTACTGCTTTGATCAAA+TGG | - | chr2_3:47274178-47274197 | None:intergenic | 35.0% | |
| !! | GTACTACATCGTCATTTTCT+AGG | - | chr2_3:47274204-47274223 | None:intergenic | 35.0% |
| AGTGTGAAGTGTGTAAATGA+AGG | + | chr2_3:47274239-47274258 | Msa0295040:intron | 35.0% | |
| !!! | CTTTTTCAGCACTTATTCTC+TGG | + | chr2_3:47274566-47274585 | Msa0295040:intron | 35.0% |
| !! | TTTTTCGGAGCATCTACTAT+TGG | - | chr2_3:47274627-47274646 | None:intergenic | 35.0% |
| GATGCTCCGAAAAAAATTAG+TGG | + | chr2_3:47274633-47274652 | Msa0295040:CDS | 35.0% | |
| !! | AACTTTTAAGTCACTGTCTG+TGG | - | chr2_3:47274733-47274752 | None:intergenic | 35.0% |
| !! | ACAAAGCATTAACTTGCTTG+GGG | - | chr2_3:47274759-47274778 | None:intergenic | 35.0% |
| !! | CTTTGTATTGACTTTGGGTT+TGG | + | chr2_3:47274773-47274792 | Msa0295040:three_prime_UTR | 35.0% |
| ATACCTTTCGCATTCATGTA+AGG | + | chr2_3:47274894-47274913 | Msa0295040:three_prime_UTR | 35.0% | |
| AAACAAATTTCATGGTCAGG+AGG | - | chr2_3:47274958-47274977 | None:intergenic | 35.0% | |
| CCAAAACAAATTTCATGGTC+AGG | - | chr2_3:47274961-47274980 | None:intergenic | 35.0% | |
| !! | CCTGACCATGAAATTTGTTT+TGG | + | chr2_3:47274958-47274977 | Msa0295040:three_prime_UTR | 35.0% |
| CTTTCTTTCTTTCTCGGTTG+CGG | - | chr2_3:47271415-47271434 | None:intergenic | 40.0% | |
| AGATGGAGAAGAAGTGGAAA+GGG | - | chr2_3:47271536-47271555 | None:intergenic | 40.0% | |
| AAGATGGAGAAGAAGTGGAA+AGG | - | chr2_3:47271537-47271556 | None:intergenic | 40.0% | |
| ATCAGAAGATGGAGAAGAAG+TGG | - | chr2_3:47271542-47271561 | None:intergenic | 40.0% | |
| TTTCTTAGTAGCTTCGGAAG+CGG | - | chr2_3:47271566-47271585 | None:intergenic | 40.0% | |
| ! | GCTCAGTTTTTACCTAACTG+GGG | + | chr2_3:47271622-47271641 | Msa0295040:CDS | 40.0% |
| CACCAAACTCAATCTCTACA+AGG | + | chr2_3:47271696-47271715 | Msa0295040:CDS | 40.0% | |
| ! | CTTTTGCAGGATGGAAAACA+TGG | + | chr2_3:47271795-47271814 | Msa0295040:intron | 40.0% |
| ! | GGAAAACATGGAAAAGCATG+GGG | + | chr2_3:47271807-47271826 | Msa0295040:CDS | 40.0% |
| CATTCAAAACCAAGCCTTAG+TGG | + | chr2_3:47272273-47272292 | Msa0295040:intron | 40.0% | |
| AAGTTTATCCCACTAAGGCT+TGG | - | chr2_3:47272285-47272304 | None:intergenic | 40.0% | |
| TCTTTCATGCTACCTGTTTC+TGG | + | chr2_3:47272312-47272331 | Msa0295040:intron | 40.0% | |
| CCCAAGCAATATCTGGATTT+AGG | - | chr2_3:47272646-47272665 | None:intergenic | 40.0% | |
| ATATTGCTTGGGGTGGATAT+TGG | + | chr2_3:47272654-47272673 | Msa0295040:intron | 40.0% | |
| !! | AGTTTGATGGTGATCTCGTA+AGG | - | chr2_3:47272886-47272905 | None:intergenic | 40.0% |
| ! | GAACATTGAGTCACTTTCCT+AGG | + | chr2_3:47273021-47273040 | Msa0295040:intron | 40.0% |
| CGAATTTCTGATCCTTCCTT+GGG | - | chr2_3:47273466-47273485 | None:intergenic | 40.0% | |
| ACGAATTTCTGATCCTTCCT+TGG | - | chr2_3:47273467-47273486 | None:intergenic | 40.0% | |
| ATGGTATACTAGGATCTGTC+AGG | + | chr2_3:47273516-47273535 | Msa0295040:intron | 40.0% | |
| CAGATTTCTGATCCTTCCTT+GGG | - | chr2_3:47273597-47273616 | None:intergenic | 40.0% | |
| ACAGATTTCTGATCCTTCCT+TGG | - | chr2_3:47273598-47273617 | None:intergenic | 40.0% | |
| AGGAAGGATCAGAAATCTGT+CGG | + | chr2_3:47273598-47273617 | Msa0295040:intron | 40.0% | |
| ATGGTTGTAATCCTGAAGGA+TGG | + | chr2_3:47273657-47273676 | Msa0295040:intron | 40.0% | |
| ATCCTGAAGGATGGTATTCT+AGG | + | chr2_3:47273666-47273685 | Msa0295040:intron | 40.0% | |
| TACCTAGAATACCATCCTTC+AGG | - | chr2_3:47273671-47273690 | None:intergenic | 40.0% | |
| ! | ACTCAAGCTTAATGGATAGC+TGG | + | chr2_3:47273781-47273800 | Msa0295040:intron | 40.0% |
| ACTCACTATACCGTACACAA+GGG | - | chr2_3:47274010-47274029 | None:intergenic | 40.0% | |
| TACTCACTATACCGTACACA+AGG | - | chr2_3:47274011-47274030 | None:intergenic | 40.0% | |
| TAAAACTATTTCCCGGGAGT+GGG | - | chr2_3:47274107-47274126 | None:intergenic | 40.0% | |
| !! | TGAAGGTATTGCATATCAGC+AGG | + | chr2_3:47274256-47274275 | Msa0295040:intron | 40.0% |
| !! | GAAGGTATTGCATATCAGCA+GGG | + | chr2_3:47274257-47274276 | Msa0295040:intron | 40.0% |
| TTGCTTGTATGGAAGCTTAG+AGG | + | chr2_3:47274445-47274464 | Msa0295040:intron | 40.0% | |
| ! | CTGATGCTTTTACTACACCT+GGG | - | chr2_3:47274686-47274705 | None:intergenic | 40.0% |
| ! | TCTGATGCTTTTACTACACC+TGG | - | chr2_3:47274687-47274706 | None:intergenic | 40.0% |
| GAACCTTACATGAATGCGAA+AGG | - | chr2_3:47274900-47274919 | None:intergenic | 40.0% | |
| ACCACATGGCCAAAACTCAT+TGG | + | chr2_3:47271653-47271672 | Msa0295040:CDS | 45.0% | |
| !! | TCCAATGAGTTTTGGCCATG+TGG | - | chr2_3:47271657-47271676 | None:intergenic | 45.0% |
| CATGGCCAAAACTCATTGGA+AGG | + | chr2_3:47271657-47271676 | Msa0295040:CDS | 45.0% | |
| !! | TCATGCTACCTGTTTCTGGT+CGG | + | chr2_3:47272316-47272335 | Msa0295040:intron | 45.0% |
| !! | TACCTGTTTCTGGTCGGATT+TGG | + | chr2_3:47272322-47272341 | Msa0295040:intron | 45.0% |
| ATCCAAATCCGACCAGAAAC+AGG | - | chr2_3:47272327-47272346 | None:intergenic | 45.0% | |
| ACAAGCAAATCGCATGCATG+TGG | - | chr2_3:47272581-47272600 | None:intergenic | 45.0% | |
| AATCCAGATATTGCTTGGGG+TGG | + | chr2_3:47272647-47272666 | Msa0295040:intron | 45.0% | |
| TATCCACCCCAAGCAATATC+TGG | - | chr2_3:47272653-47272672 | None:intergenic | 45.0% | |
| !! | CTGGGTGTATTTTTGAGAGC+TGG | + | chr2_3:47272766-47272785 | Msa0295040:intron | 45.0% |
| ATGGTGATCTCGTAAGGTGA+AGG | - | chr2_3:47272880-47272899 | None:intergenic | 45.0% | |
| AAAACCATTCTGCACAGCCT+AGG | - | chr2_3:47273041-47273060 | None:intergenic | 45.0% | |
| ! | AGGCTGTGCAGAATGGTTTT+TGG | + | chr2_3:47273041-47273060 | Msa0295040:intron | 45.0% |
| TGTCAGGAGAGTAAATCCCA+AGG | + | chr2_3:47273532-47273551 | Msa0295040:intron | 45.0% | |
| GGAAGGATCAGAAATCTGTC+GGG | + | chr2_3:47273599-47273618 | Msa0295040:intron | 45.0% | |
| CTCACTATACCGTACACAAG+GGG | - | chr2_3:47274009-47274028 | None:intergenic | 45.0% | |
| CTAAAACTATTTCCCGGGAG+TGG | - | chr2_3:47274108-47274127 | None:intergenic | 45.0% | |
| ! | ATGCTTTTACTACACCTGGG+AGG | - | chr2_3:47274683-47274702 | None:intergenic | 45.0% |
| TCTGTGGAACTTGTCAAGGT+TGG | - | chr2_3:47274717-47274736 | None:intergenic | 45.0% | |
| ACTGTCTGTGGAACTTGTCA+AGG | - | chr2_3:47274721-47274740 | None:intergenic | 45.0% | |
| ! | TGGTAACCGATTCCCCAGTT+AGG | - | chr2_3:47271637-47271656 | None:intergenic | 50.0% |
| CTTTCCTAGGCTGTGCAGAA+TGG | + | chr2_3:47273034-47273053 | Msa0295040:intron | 50.0% | |
| GGAAGGGAGAGTAAATCCCA+AGG | + | chr2_3:47273447-47273466 | Msa0295040:intron | 50.0% | |
| GGGAGAGTAAATCCCAAGGA+AGG | + | chr2_3:47273451-47273470 | Msa0295040:intron | 50.0% | |
| GGAAGGGAGAGTAAATCCCA+AGG | + | chr2_3:47273447-47273466 | Msa0295040:intron | 50.0% | |
| GGGAGAGTAAATCCCAAGGA+AGG | + | chr2_3:47273451-47273470 | Msa0295040:intron | 50.0% | |
| GTTAGACAGGGACTTCGTCT+TGG | - | chr2_3:47273814-47273833 | None:intergenic | 50.0% | |
| AGGTTGGGTTCCTTCTGAGT+TGG | + | chr2_3:47274073-47274092 | Msa0295040:intron | 50.0% | |
| GGTGAGTTTGCCAACTCAGA+AGG | - | chr2_3:47274086-47274105 | None:intergenic | 50.0% | |
| ! | CAGCAGGGATTTTCCATGCA+CGG | + | chr2_3:47274272-47274291 | Msa0295040:intron | 50.0% |
| ! | GTGGAGTTCACAAGCGTTGT+TGG | + | chr2_3:47274652-47274671 | Msa0295040:CDS | 50.0% |
| ! | GAGTTCACAAGCGTTGTTGG+AGG | + | chr2_3:47274655-47274674 | Msa0295040:CDS | 50.0% |
| TCGGAAGCGGCATCAGAAGA+TGG | - | chr2_3:47271553-47271572 | None:intergenic | 55.0% | |
| CTGGGGAATCGGTTACCACA+TGG | + | chr2_3:47271639-47271658 | Msa0295040:CDS | 55.0% | |
| TTGGCAAACTCACCCACTCC+CGG | + | chr2_3:47274092-47274111 | Msa0295040:intron | 55.0% | |
| ! | AGGGATTTTCCATGCACGGC+AGG | + | chr2_3:47274276-47274295 | Msa0295040:intron | 55.0% |
| TGGCAAACTCACCCACTCCC+GGG | + | chr2_3:47274093-47274112 | Msa0295040:intron | 60.0% | |
| GTTCAAGCACCTGCCGTGCA+TGG | - | chr2_3:47274288-47274307 | None:intergenic | 60.0% | |
| !! | CGTTGTTGGAGGTACCTCCC+AGG | + | chr2_3:47274666-47274685 | Msa0295040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 47271386 | 47275032 | 47271386 | ID=Msa0295040;Name=Msa0295040 |
| chr2_3 | mRNA | 47271386 | 47275032 | 47271386 | ID=Msa0295040-mRNA-1;Parent=Msa0295040;Name=Msa0295040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|1|1|3|262|154 |
| chr2_3 | exon | 47271386 | 47271717 | 47271386 | ID=Msa0295040-mRNA-1:exon:14735;Parent=Msa0295040-mRNA-1 |
| chr2_3 | exon | 47271804 | 47271846 | 47271804 | ID=Msa0295040-mRNA-1:exon:14736;Parent=Msa0295040-mRNA-1 |
| chr2_3 | exon | 47274619 | 47275032 | 47274619 | ID=Msa0295040-mRNA-1:exon:14737;Parent=Msa0295040-mRNA-1 |
| chr2_3 | five_prime_UTR | 47271386 | 47271447 | 47271386 | ID=Msa0295040-mRNA-1:five_prime_utr;Parent=Msa0295040-mRNA-1 |
| chr2_3 | CDS | 47271448 | 47271717 | 47271448 | ID=Msa0295040-mRNA-1:cds;Parent=Msa0295040-mRNA-1 |
| chr2_3 | CDS | 47271804 | 47271846 | 47271804 | ID=Msa0295040-mRNA-1:cds;Parent=Msa0295040-mRNA-1 |
| chr2_3 | CDS | 47274619 | 47274770 | 47274619 | ID=Msa0295040-mRNA-1:cds;Parent=Msa0295040-mRNA-1 |
| chr2_3 | three_prime_UTR | 47274771 | 47275032 | 47274771 | ID=Msa0295040-mRNA-1:three_prime_utr;Parent=Msa0295040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
