AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0224100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0224100 MtrunA17_Chr2g0329921 94.719 303 14 1 1 301 1 303 0.0 553
Msa0224100 MtrunA17_Chr8g0342871 46.254 307 136 7 1 300 1 285 1.89e-77 237
Msa0224100 MtrunA17_Chr5g0401061 40.952 210 99 6 1 208 1 187 1.43e-35 130
Msa0224100 MtrunA17_Chr4g0054131 38.605 215 112 5 1 208 1 202 2.31e-34 127
Msa0224100 MtrunA17_Chr8g0384671 37.681 207 104 7 1 204 1 185 1.58e-30 116
Msa0224100 MtrunA17_Chr2g0293381 35.885 209 107 5 1 204 1 187 5.81e-30 115
Msa0224100 MtrunA17_Chr1g0166681 67.241 58 19 0 1 58 1 58 1.41e-20 87.4
Msa0224100 MtrunA17_Chr8g0383821 62.069 58 22 0 1 58 1 58 1.83e-19 82.8
Msa0224100 MtrunA17_Chr7g0260771 42.254 71 38 2 135 204 60 128 3.61e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0224100 AT1G72740.2 44.737 304 136 9 1 298 1 278 6.42e-69 216
Msa0224100 AT1G72740.1 44.194 310 135 10 1 298 1 284 9.21e-67 210
Msa0224100 AT1G17520.4 41.083 314 142 9 1 298 1 287 6.14e-56 183
Msa0224100 AT1G17520.3 40.952 315 142 10 1 298 1 288 3.34e-54 178
Msa0224100 AT1G17520.1 40.625 320 141 10 1 298 1 293 3.79e-54 178
Msa0224100 AT1G17520.2 40.498 321 141 11 1 298 1 294 2.79e-52 174
Msa0224100 AT1G49950.3 37.500 208 109 3 1 208 1 187 1.22e-31 120
Msa0224100 AT1G49950.1 37.500 208 109 3 1 208 1 187 1.22e-31 120
Msa0224100 AT1G49950.2 37.500 208 109 3 1 208 1 187 1.22e-31 120
Msa0224100 AT5G67580.2 34.314 204 117 5 1 204 1 187 1.63e-25 103
Msa0224100 AT5G67580.1 34.314 204 117 5 1 204 1 187 1.63e-25 103
Msa0224100 AT3G49850.1 33.014 209 111 5 1 204 1 185 3.60e-23 97.1
Msa0224100 AT3G49850.2 33.014 209 111 5 1 204 1 185 3.60e-23 97.1
Msa0224100 AT1G54260.1 35.079 191 91 5 139 298 6 194 8.73e-21 88.6
Msa0224100 AT1G54240.1 31.638 177 95 8 141 298 57 226 1.89e-11 63.2
Msa0224100 AT2G18050.1 40.476 84 46 2 137 218 24 105 7.90e-11 60.1

Find 74 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGTTCGCTTCACTTAATT+TGG 0.214811 2_1:+73837259 Msa0224100:exon
CCTGGCAGGTCCATTTCTTT+TGG 0.234603 2_1:-73836935 None:intergenic
ACAGAAAGATATTCAAAGTT+TGG 0.268113 2_1:+73837073 Msa0224100:CDS
AGTTTCGGAAGCTTCCTTTA+TGG 0.269510 2_1:-73836987 None:intergenic
AGAAATATGGTGCTGGAAAA+TGG 0.290469 2_1:+73832554 Msa0224100:CDS
CAGAAAGATATTCAAAGTTT+GGG 0.300205 2_1:+73837074 Msa0224100:CDS
ACGAACCTTGAGATCAATAT+TGG 0.326871 2_1:-73832626 None:intergenic
CATCAAGGTGTTCAGAAATA+TGG 0.349929 2_1:+73832541 Msa0224100:CDS
TGCATATGATGATGCCATAA+AGG 0.370905 2_1:+73836973 Msa0224100:CDS
ACAAAATGGTTACAAGATAA+AGG 0.372290 2_1:+73836865 Msa0224100:CDS
TGCTGCTGCTGCTGTTGCTC+CGG 0.384625 2_1:+73832985 Msa0224100:CDS
CATCACCTGCAGGTACAAAA+TGG 0.394363 2_1:+73836851 Msa0224100:intron
ACTCCCAAGGGTAAACCATC+TGG 0.398706 2_1:+73832884 Msa0224100:CDS
AAGTCTGCAGGCTAGAGTTT+CGG 0.422011 2_1:-73837002 None:intergenic
ACTACCTACACCAAAAGAAA+TGG 0.422553 2_1:+73836925 Msa0224100:CDS
GCAGAAGCAGCAGGAGTACC+AGG 0.430652 2_1:-73832953 None:intergenic
TGAAGCTCTATCAACAATCA+AGG 0.441177 2_1:+73834588 Msa0224100:CDS
GGTACTCCTGCTGCTTCTGC+TGG 0.444786 2_1:+73832956 Msa0224100:CDS
AGCATTTAAGTCAGAACCAT+TGG 0.454179 2_1:-73834614 None:intergenic
GACCCAGATGGTTTACCCTT+GGG 0.462495 2_1:-73832887 None:intergenic
CCTTCTCCGTCTCCTGCTCC+TGG 0.470392 2_1:+73832935 Msa0224100:CDS
AGACCCAGATGGTTTACCCT+TGG 0.488584 2_1:-73832888 None:intergenic
GGAGCAACAGCAGCAGCAGC+AGG 0.489385 2_1:-73832983 None:intergenic
GGAGTAGCATTGCTTGGAGC+AGG 0.489776 2_1:-73832914 None:intergenic
GGAGTACCAGCAGAAGCAGC+AGG 0.492329 2_1:-73832962 None:intergenic
TTCTGAGAAGGCTGGCTAGT+AGG 0.497538 2_1:-73833052 None:intergenic
CTCAAGCTCAGACTCCGATT+CGG 0.498629 2_1:+73833026 Msa0224100:CDS
AATTATTAGATGACCCTGGC+AGG 0.501469 2_1:-73836949 None:intergenic
ATTATACTGAGGGTAAATCT+TGG 0.508478 2_1:-73833089 None:intergenic
GCAGCAGGAGTACCAGGAGC+AGG 0.512995 2_1:-73832947 None:intergenic
TGCTATTATTAGCTTCATTG+AGG 0.513608 2_1:+73834633 Msa0224100:CDS
GCATTTAAGTCAGAACCATT+GGG 0.513681 2_1:-73834613 None:intergenic
CTCAGAAAGAGAAGAGAGAT+GGG 0.513728 2_1:+73832475 Msa0224100:exon
CTCCGCGTCAGCAAGTCTGC+AGG 0.514816 2_1:-73837014 None:intergenic
CACTAGGTGCAAAGTTAAGA+AGG 0.516076 2_1:+73835653 Msa0224100:CDS
CCGTTCCAATATTGATCTCA+AGG 0.518952 2_1:+73832621 Msa0224100:CDS
GGAGAAGGAGTAGCATTGCT+TGG 0.518958 2_1:-73832920 None:intergenic
GGTGTAGCAGCAACATTGAC+CGG 0.528722 2_1:-73833004 None:intergenic
CTCCCAAGGGTAAACCATCT+GGG 0.529021 2_1:+73832885 Msa0224100:CDS
CCAAAAGAAATGGACCTGCC+AGG 0.529549 2_1:+73836935 Msa0224100:CDS
GCTCAGAAAGAGAAGAGAGA+TGG 0.531225 2_1:+73832474 Msa0224100:exon
CAAAATTTCAGAAGGACACT+AGG 0.531519 2_1:+73835637 Msa0224100:CDS
TTTGGCTACTGCAGCAGTCA+GGG 0.538485 2_1:+73837048 Msa0224100:CDS
CAGTCAAGGGAAACTTGAAA+AGG 0.538946 2_1:+73835681 Msa0224100:CDS
GAAGAAGAAGCTCTGCATCA+AGG 0.542831 2_1:+73832526 Msa0224100:CDS
CTCAAAGTCAAAATTTCAGA+AGG 0.543098 2_1:+73835629 Msa0224100:CDS
CTCAAAGGAACTTGAAACAA+AGG 0.548952 2_1:-73837389 None:intergenic
TGGGAAATCAGAAGCAGAAG+TGG 0.548959 2_1:+73832494 Msa0224100:CDS
AAGATAAAGGACACCTCAGT+GGG 0.554986 2_1:+73836878 Msa0224100:CDS
GGAGTACCAGGAGCAGGAGA+CGG 0.555301 2_1:-73832941 None:intergenic
TTAAGAAGGCTTGTCAGTCA+AGG 0.558246 2_1:+73835667 Msa0224100:CDS
TGTCATAACTTGACATGTGT+TGG 0.558378 2_1:+73837512 Msa0224100:three_prime_UTR
TTGACTAGTCTATTAGTACT+CGG 0.562653 2_1:+73832408 None:intergenic
GGTGTTCAGAAATATGGTGC+TGG 0.564792 2_1:+73832547 Msa0224100:CDS
CCAGGAGCAGGAGACGGAGA+AGG 0.566651 2_1:-73832935 None:intergenic
TAAGAAGGCTTGTCAGTCAA+GGG 0.572247 2_1:+73835668 Msa0224100:CDS
TGTCATCATTCTGAGAAGGC+TGG 0.574703 2_1:-73833060 None:intergenic
CGAATCGGAGTCTGAGCTTG+AGG 0.575521 2_1:-73833025 None:intergenic
CAAAAGAAATGGACCTGCCA+GGG 0.589349 2_1:+73836936 Msa0224100:CDS
TCAAAACCCTAAAACTCCCA+AGG 0.596857 2_1:+73832871 Msa0224100:CDS
TCTGTGATGGCAGGTATGCT+CGG 0.596964 2_1:+73837232 Msa0224100:intron
TGGCTAGTAGGAGTCCGAAT+CGG 0.600441 2_1:-73833040 None:intergenic
AAGATATTCAAAGTTTGGGG+AGG 0.610909 2_1:+73837078 Msa0224100:CDS
GCATTGTCATCATTCTGAGA+AGG 0.619580 2_1:-73833064 None:intergenic
AGCCTGCAGACTTGCTGACG+CGG 0.625031 2_1:+73837012 Msa0224100:CDS
AGAAAGATATTCAAAGTTTG+GGG 0.625477 2_1:+73837075 Msa0224100:CDS
GCAAAATTATTAGATGACCC+TGG 0.640236 2_1:-73836953 None:intergenic
CCTTGAGATCAATATTGGAA+CGG 0.643002 2_1:-73832621 None:intergenic
CAAAACCCTAAAACTCCCAA+GGG 0.647393 2_1:+73832872 Msa0224100:CDS
TCAACAATCAAGGATCCCAA+TGG 0.653809 2_1:+73834598 Msa0224100:CDS
GGAGCAGGAGAAGACCCAGA+TGG 0.666811 2_1:-73832899 None:intergenic
GATAAAGGACACCTCAGTGG+GGG 0.678712 2_1:+73836880 Msa0224100:CDS
CAAGATAAAGGACACCTCAG+TGG 0.681785 2_1:+73836877 Msa0224100:CDS
AGATAAAGGACACCTCAGTG+GGG 0.739882 2_1:+73836879 Msa0224100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTTTTTTTTTGAA+AGG + chr2_1:73834997-73835016 Msa0224100:intron 10.0%
!! ATCATATAATATCAATATAA+AGG - chr2_1:73836094-73836113 None:intergenic 10.0%
!!! AAAGGTTTAAATTTTTTATT+GGG - chr2_1:73837374-73837393 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_1:73837351-73837370 None:intergenic 100.0%
!! ACAGTAAGTAATATAATTTA+GGG + chr2_1:73833312-73833331 Msa0224100:intron 15.0%
!! AACAAAAATAAGATATATCA+TGG - chr2_1:73834491-73834510 None:intergenic 15.0%
!!! TTGTACTTTTTATTTTTATC+AGG + chr2_1:73834548-73834567 Msa0224100:intron 15.0%
!!! TTTTTGTTTTATACTTTTTG+AGG + chr2_1:73835567-73835586 Msa0224100:intron 15.0%
!! ATAATATCAATATAAAGGAA+AGG - chr2_1:73836089-73836108 None:intergenic 15.0%
!!! AAGGTTTAAATTTTTTATTG+GGG - chr2_1:73837373-73837392 None:intergenic 15.0%
!!! CAAAGGTTTAAATTTTTTAT+TGG - chr2_1:73837375-73837394 None:intergenic 15.0%
!!! TTTTGTGTTACTTTTTTTTT+TGG + chr2_1:73837420-73837439 Msa0224100:three_prime_UTR 15.0%
!!! TTTGTGTTACTTTTTTTTTT+GGG + chr2_1:73837421-73837440 Msa0224100:three_prime_UTR 15.0%
!!! TTTTTTTTTGGGAATAAAAT+TGG + chr2_1:73837432-73837451 Msa0224100:three_prime_UTR 15.0%
!! AATTTCACAAAAACATAAAC+TGG - chr2_1:73832674-73832693 None:intergenic 20.0%
!! GACAGTAAGTAATATAATTT+AGG + chr2_1:73833311-73833330 Msa0224100:intron 20.0%
!! ATGGTAAGTTATATGATTTA+GGG + chr2_1:73833383-73833402 Msa0224100:intron 20.0%
!! ACAAAATACTGAATTATGAA+TGG + chr2_1:73833698-73833717 Msa0224100:intron 20.0%
!! CAAAATACTGAATTATGAAT+GGG + chr2_1:73833699-73833718 Msa0224100:intron 20.0%
!! AAAATACTGAATTATGAATG+GGG + chr2_1:73833700-73833719 Msa0224100:intron 20.0%
!!! CACATTCTTATTATACATTT+TGG - chr2_1:73833889-73833908 None:intergenic 20.0%
!!! TGTGTTTTTTTAAAGATGAA+GGG + chr2_1:73834285-73834304 Msa0224100:intron 20.0%
!! ATAATATGTTCTTAATTGAC+AGG - chr2_1:73834518-73834537 None:intergenic 20.0%
!! TCAATTAAGAACATATTATG+AGG + chr2_1:73834519-73834538 Msa0224100:intron 20.0%
!! CAATTAAGAACATATTATGA+GGG + chr2_1:73834520-73834539 Msa0224100:intron 20.0%
!!! TTTGACATTTATTTTTACAC+CGG + chr2_1:73835319-73835338 Msa0224100:intron 20.0%
!!! AAATATGCAATTTTTACATG+TGG - chr2_1:73835382-73835401 None:intergenic 20.0%
!!! ACACAATCTCAAATTTTATT+TGG - chr2_1:73835408-73835427 None:intergenic 20.0%
!!! CTTTTTGATCTTTTAAATGT+GGG + chr2_1:73835523-73835542 Msa0224100:intron 20.0%
!! AATTTATTTACGAGTAGATA+GGG - chr2_1:73837166-73837185 None:intergenic 20.0%
!! AAATTTATTTACGAGTAGAT+AGG - chr2_1:73837167-73837186 None:intergenic 20.0%
!!! TTTTGTTTCAACATTTAAAC+TGG + chr2_1:73837298-73837317 Msa0224100:three_prime_UTR 20.0%
!!! AGGTTTAAATTTTTTATTGG+GGG - chr2_1:73837372-73837391 None:intergenic 20.0%
!! AAAAAGTAACACAAAAACAT+TGG - chr2_1:73837416-73837435 None:intergenic 20.0%
!!! AAGTGGTTTTTTTTCTATAT+AGG + chr2_1:73837470-73837489 Msa0224100:three_prime_UTR 20.0%
!!! TTTTTTTCTATATAGGAGAT+TGG + chr2_1:73837477-73837496 Msa0224100:three_prime_UTR 20.0%
!!! TTGTGATTGATTTTTTGTTC+AGG + chr2_1:73832817-73832836 Msa0224100:intron 25.0%
!!! GATTTTTTGTTCAGGATAAA+TGG + chr2_1:73832825-73832844 Msa0224100:intron 25.0%
! ACAAAATTGCATAAAGAAAG+GGG - chr2_1:73833121-73833140 None:intergenic 25.0%
! CACAAAATTGCATAAAGAAA+GGG - chr2_1:73833122-73833141 None:intergenic 25.0%
! TCACAAAATTGCATAAAGAA+AGG - chr2_1:73833123-73833142 None:intergenic 25.0%
! CATATAACTTACCATCAAAT+TGG - chr2_1:73833378-73833397 None:intergenic 25.0%
! GATGGTAAGTTATATGATTT+AGG + chr2_1:73833382-73833401 Msa0224100:intron 25.0%
! TATCCAATTTACTCTCAAAT+TGG - chr2_1:73833410-73833429 None:intergenic 25.0%
! TTTGCAAAAATTCAAAACCA+GGG + chr2_1:73833454-73833473 Msa0224100:intron 25.0%
!! TTTGCCTAATTGCAAATTTT+AGG + chr2_1:73833480-73833499 Msa0224100:intron 25.0%
!! TTGCCTAATTGCAAATTTTA+GGG + chr2_1:73833481-73833500 Msa0224100:intron 25.0%
! TTCAATTTCATTGGATGAAT+TGG + chr2_1:73833522-73833541 Msa0224100:intron 25.0%
! TAAATATACAATCCTTTCAG+AGG - chr2_1:73833746-73833765 None:intergenic 25.0%
!!! CTGCATAATTTTTTCACAAT+AGG - chr2_1:73833800-73833819 None:intergenic 25.0%
!!! AATTTTTCAAATGAGATGGA+GGG - chr2_1:73833990-73834009 None:intergenic 25.0%
!!! TAATTTTTCAAATGAGATGG+AGG - chr2_1:73833991-73834010 None:intergenic 25.0%
!!! GAGTAATTTTTCAAATGAGA+TGG - chr2_1:73833994-73834013 None:intergenic 25.0%
! TATGGGATATAATTGTATCA+TGG - chr2_1:73834064-73834083 None:intergenic 25.0%
! GAGACAAATTAACAATAGAT+GGG + chr2_1:73834087-73834106 Msa0224100:intron 25.0%
! AGACAAATTAACAATAGATG+GGG + chr2_1:73834088-73834107 Msa0224100:intron 25.0%
! CTATGAATTAAATGGAGAAT+TGG - chr2_1:73834227-73834246 None:intergenic 25.0%
! TCCATTTAATTCATAGAAAG+TGG + chr2_1:73834231-73834250 Msa0224100:intron 25.0%
!!! CTGTGTTTTTTTAAAGATGA+AGG + chr2_1:73834284-73834303 Msa0224100:intron 25.0%
!!! AAAGTGTTCTGATTTTAACA+TGG + chr2_1:73834340-73834359 Msa0224100:intron 25.0%
!! TTTTATCAGGTACAATTCAT+TGG + chr2_1:73834561-73834580 Msa0224100:intron 25.0%
! TACTTATGATCACTATTTAG+TGG + chr2_1:73834697-73834716 Msa0224100:intron 25.0%
! AAAGATCTTAGATTGAATTG+CGG + chr2_1:73834782-73834801 Msa0224100:intron 25.0%
! AATATGTAACGTCAATCATT+TGG + chr2_1:73834950-73834969 Msa0224100:intron 25.0%
! ATATGTAACGTCAATCATTT+GGG + chr2_1:73834951-73834970 Msa0224100:intron 25.0%
! AGAGGGACTAAAATAAAAAA+TGG + chr2_1:73835204-73835223 Msa0224100:intron 25.0%
! GAGGGACTAAAATAAAAAAT+GGG + chr2_1:73835205-73835224 Msa0224100:intron 25.0%
! TAAAAAATGGGTATCTATAG+AGG + chr2_1:73835217-73835236 Msa0224100:intron 25.0%
! AAAAAATGGGTATCTATAGA+GGG + chr2_1:73835218-73835237 Msa0224100:intron 25.0%
!!! TGAATTGATTTTAAACTCTC+CGG - chr2_1:73835341-73835360 None:intergenic 25.0%
! AAAATCAATTCATCAACTCA+AGG + chr2_1:73835349-73835368 Msa0224100:intron 25.0%
!! GCTTTTTGATCTTTTAAATG+TGG + chr2_1:73835522-73835541 Msa0224100:intron 25.0%
!!! ATTTCTTTAAAGCATTACAG+AGG - chr2_1:73835716-73835735 None:intergenic 25.0%
!!! GTTAGTTACTTATTTCTGTT+TGG + chr2_1:73835834-73835853 Msa0224100:intron 25.0%
!! TTTTTGAATTTCTGTCACAT+AGG + chr2_1:73835972-73835991 Msa0224100:intron 25.0%
! ACAATAATTTCTTCAGCAAT+GGG - chr2_1:73836133-73836152 None:intergenic 25.0%
! GATAAGGATAACGAATAAAA+AGG - chr2_1:73836184-73836203 None:intergenic 25.0%
!!! TATTTCTCACTGATTTTTTC+CGG + chr2_1:73836279-73836298 Msa0224100:intron 25.0%
!!! TTTTACTCTGTTACTTCTAA+TGG + chr2_1:73836400-73836419 Msa0224100:intron 25.0%
! TACTCAAATAAACACAAACA+CGG - chr2_1:73836566-73836585 None:intergenic 25.0%
!! GTGTTTATTTGAGTATGTTT+TGG + chr2_1:73836571-73836590 Msa0224100:intron 25.0%
! ACAAAATGGTTACAAGATAA+AGG + chr2_1:73836865-73836884 Msa0224100:CDS 25.0%
! ACAGAAAGATATTCAAAGTT+TGG + chr2_1:73837073-73837092 Msa0224100:CDS 25.0%
! CAGAAAGATATTCAAAGTTT+GGG + chr2_1:73837074-73837093 Msa0224100:CDS 25.0%
! AGAAAGATATTCAAAGTTTG+GGG + chr2_1:73837075-73837094 Msa0224100:CDS 25.0%
! TTACTTGCATAACTTATAGT+TGG - chr2_1:73837191-73837210 None:intergenic 25.0%
!! TAAAATGACCATTGTTCTTT+TGG + chr2_1:73837208-73837227 Msa0224100:intron 25.0%
! TGTTGAAACAAAAACACTAT+AGG - chr2_1:73837291-73837310 None:intergenic 25.0%
!! TAAAAACATTTTTCACTGGA+TGG - chr2_1:73837325-73837344 None:intergenic 25.0%
!!! TTTAAATTTTTTATTGGGGG+GGG - chr2_1:73837369-73837388 None:intergenic 25.0%
!!! GTTTAAATTTTTTATTGGGG+GGG - chr2_1:73837370-73837389 None:intergenic 25.0%
!!! GGTTTAAATTTTTTATTGGG+GGG - chr2_1:73837371-73837390 None:intergenic 25.0%
! TTTTTGTTCAGGATAAATGG+CGG + chr2_1:73832828-73832847 Msa0224100:intron 30.0%
ATTATACTGAGGGTAAATCT+TGG - chr2_1:73833092-73833111 None:intergenic 30.0%
TGTAAACAAACAAATTCAGG+GGG - chr2_1:73833211-73833230 None:intergenic 30.0%
GTGTAAACAAACAAATTCAG+GGG - chr2_1:73833212-73833231 None:intergenic 30.0%
GGTGTAAACAAACAAATTCA+GGG - chr2_1:73833213-73833232 None:intergenic 30.0%
AGGTGTAAACAAACAAATTC+AGG - chr2_1:73833214-73833233 None:intergenic 30.0%
TGCTCTATTCGTAAATTTCA+AGG - chr2_1:73833234-73833253 None:intergenic 30.0%
GTTTGCAAAAATTCAAAACC+AGG + chr2_1:73833453-73833472 Msa0224100:intron 30.0%
! TGCCTAATTGCAAATTTTAG+GGG + chr2_1:73833482-73833501 Msa0224100:intron 30.0%
!! ATTTTAGGGGTGTAAATGTT+CGG + chr2_1:73833495-73833514 Msa0224100:intron 30.0%
TTCATCCAATGAAATTGAAG+AGG - chr2_1:73833521-73833540 None:intergenic 30.0%
TGGTGATTTACTCTTTGATT+TGG + chr2_1:73833542-73833561 Msa0224100:intron 30.0%
!! TTTACTCTTTGATTTGGTAC+TGG + chr2_1:73833548-73833567 Msa0224100:intron 30.0%
! GATAAAAGTACGAGTTTGAT+AGG + chr2_1:73833570-73833589 Msa0224100:intron 30.0%
CTTGATCCAACAATCAAAAT+CGG - chr2_1:73833836-73833855 None:intergenic 30.0%
TTTGATTGTTGGATCAAGAT+TGG + chr2_1:73833838-73833857 Msa0224100:intron 30.0%
ACCATCTGATTAAGATCATA+AGG - chr2_1:73833914-73833933 None:intergenic 30.0%
!! ATTTTTCAAATGAGATGGAG+GGG - chr2_1:73833989-73834008 None:intergenic 30.0%
TGAAAAATTACTCTTCACCA+AGG + chr2_1:73834001-73834020 Msa0224100:intron 30.0%
GAAAAATTACTCTTCACCAA+GGG + chr2_1:73834002-73834021 Msa0224100:intron 30.0%
TCTTCAAAAAGAAAATCCCT+TGG - chr2_1:73834021-73834040 None:intergenic 30.0%
ATTGTATCATGGCATTTCTT+TGG - chr2_1:73834053-73834072 None:intergenic 30.0%
!! TGTTAATTTGTCTCGAGTAT+GGG - chr2_1:73834081-73834100 None:intergenic 30.0%
!! TTGTTAATTTGTCTCGAGTA+TGG - chr2_1:73834082-73834101 None:intergenic 30.0%
CGAGACAAATTAACAATAGA+TGG + chr2_1:73834086-73834105 Msa0224100:intron 30.0%
GACAAATTAACAATAGATGG+GGG + chr2_1:73834089-73834108 Msa0224100:intron 30.0%
ACAAATTAACAATAGATGGG+GGG + chr2_1:73834090-73834109 Msa0224100:intron 30.0%
!! GGTAGCAAATTGTTTTATTG+TGG - chr2_1:73834178-73834197 None:intergenic 30.0%
! GCCACTTTCTATGAATTAAA+TGG - chr2_1:73834235-73834254 None:intergenic 30.0%
ATTCATAGAAAGTGGCAAAT+AGG + chr2_1:73834239-73834258 Msa0224100:intron 30.0%
!! TTTTTAAAGATGAAGGGCTT+AGG + chr2_1:73834291-73834310 Msa0224100:intron 30.0%
!! TTTTAAAGATGAAGGGCTTA+GGG + chr2_1:73834292-73834311 Msa0224100:intron 30.0%
! TGCTATTATTAGCTTCATTG+AGG + chr2_1:73834633-73834652 Msa0224100:CDS 30.0%
!!! CATCAAAAGTGTTTTCCTTT+TGG + chr2_1:73834890-73834909 Msa0224100:intron 30.0%
!!! TTTTTTTTGAAAGGCGATTG+TGG + chr2_1:73835006-73835025 Msa0224100:intron 30.0%
! ATAAGTGTTGCCAAATAAGA+AGG - chr2_1:73835110-73835129 None:intergenic 30.0%
TCAACCTATAATGTATCAGA+GGG + chr2_1:73835187-73835206 Msa0224100:intron 30.0%
!! AATTTCCTTGCTTTTGTGTT+CGG + chr2_1:73835431-73835450 Msa0224100:intron 30.0%
!!! CTTCTGAAATTTTGACTTTG+AGG - chr2_1:73835631-73835650 None:intergenic 30.0%
CTCAAAGTCAAAATTTCAGA+AGG + chr2_1:73835629-73835648 Msa0224100:CDS 30.0%
! ACACACTATAAAGGAGTATA+AGG - chr2_1:73835774-73835793 None:intergenic 30.0%
AAAGAAAGTGACAGAAAATG+AGG - chr2_1:73836017-73836036 None:intergenic 30.0%
AATATAAAGGAAAGGCTTCA+AGG - chr2_1:73836081-73836100 None:intergenic 30.0%
CAATAATTTCTTCAGCAATG+GGG - chr2_1:73836132-73836151 None:intergenic 30.0%
GACAATAATTTCTTCAGCAA+TGG - chr2_1:73836134-73836153 None:intergenic 30.0%
AAGGATCCAGAAAGAAATTA+TGG - chr2_1:73836165-73836184 None:intergenic 30.0%
TAACAAGTATGAAGTCAACA+AGG - chr2_1:73836213-73836232 None:intergenic 30.0%
! ACTTCATACTTGTTAGATGT+GGG + chr2_1:73836218-73836237 Msa0224100:intron 30.0%
!! CAAGCAAAATGAAGCATTTT+TGG - chr2_1:73836352-73836371 None:intergenic 30.0%
ACATAGAACATACAACATTG+AGG - chr2_1:73836375-73836394 None:intergenic 30.0%
! AACTGTGAGGACATTTTATT+TGG + chr2_1:73836500-73836519 Msa0224100:intron 30.0%
ACTCAAATAAACACAAACAC+GGG - chr2_1:73836565-73836584 None:intergenic 30.0%
! ACTCTTTCTTTTTCTGCTAT+TGG - chr2_1:73836605-73836624 None:intergenic 30.0%
AAGATTGAACGTGTGTAAAA+TGG + chr2_1:73836710-73836729 Msa0224100:intron 30.0%
! CGTCTAAAAACATTTTTCAC+TGG - chr2_1:73837329-73837348 None:intergenic 30.0%
!!! TTAAATTTTTTATTGGGGGG+GGG - chr2_1:73837368-73837387 None:intergenic 30.0%
! CATCAAGGTGTTCAGAAATA+TGG + chr2_1:73832541-73832560 Msa0224100:CDS 35.0%
! AGAAATATGGTGCTGGAAAA+TGG + chr2_1:73832554-73832573 Msa0224100:CDS 35.0%
!! CGAGTTTTTGACTGAATTGA+GGG - chr2_1:73832597-73832616 None:intergenic 35.0%
CCTTGAGATCAATATTGGAA+CGG - chr2_1:73832624-73832643 None:intergenic 35.0%
ACGAACCTTGAGATCAATAT+TGG - chr2_1:73832629-73832648 None:intergenic 35.0%
! TCGTTTTGTCTTCCTTAATC+AGG + chr2_1:73832645-73832664 Msa0224100:intron 35.0%
! CGTTTTGTCTTCCTTAATCA+GGG + chr2_1:73832646-73832665 Msa0224100:intron 35.0%
ATAAACCCTAACCCTGATTA+AGG - chr2_1:73832660-73832679 None:intergenic 35.0%
! CGGAATTTGAATGTTTTTCC+TGG + chr2_1:73832848-73832867 Msa0224100:CDS 35.0%
TTGCATAAAGAAAGGGGAAA+AGG - chr2_1:73833115-73833134 None:intergenic 35.0%
TTGTGTGTGGTTGTTTGATT+TGG + chr2_1:73833168-73833187 Msa0224100:intron 35.0%
!! GATCTTTCTGTTGACTTGTA+AGG + chr2_1:73833280-73833299 Msa0224100:intron 35.0%
GGACCAATTTGAGAGTAAAT+TGG + chr2_1:73833404-73833423 Msa0224100:intron 35.0%
CACCCCTAAAATTTGCAATT+AGG - chr2_1:73833487-73833506 None:intergenic 35.0%
ATGAGTTCTCATTAGATGTC+GGG - chr2_1:73833625-73833644 None:intergenic 35.0%
GATGAGTTCTCATTAGATGT+CGG - chr2_1:73833626-73833645 None:intergenic 35.0%
GCTTGTGTGGCAATAATAAT+AGG - chr2_1:73833648-73833667 None:intergenic 35.0%
GATTACAAAATCAGCTTGTG+TGG - chr2_1:73833661-73833680 None:intergenic 35.0%
TACTGAATTATGAATGGGGT+TGG + chr2_1:73833704-73833723 Msa0224100:intron 35.0%
AATCCTTTCAGAGGAAAAAG+GGG - chr2_1:73833737-73833756 None:intergenic 35.0%
CAATCCTTTCAGAGGAAAAA+GGG - chr2_1:73833738-73833757 None:intergenic 35.0%
ACAATCCTTTCAGAGGAAAA+AGG - chr2_1:73833739-73833758 None:intergenic 35.0%
!!! TGTCATCCGATTTTGATTGT+TGG + chr2_1:73833827-73833846 Msa0224100:intron 35.0%
GGACTCAAAGTTAACAAAGT+GGG - chr2_1:73833868-73833887 None:intergenic 35.0%
TGGACTCAAAGTTAACAAAG+TGG - chr2_1:73833869-73833888 None:intergenic 35.0%
GCCTTATGATCTTAATCAGA+TGG + chr2_1:73833910-73833929 Msa0224100:intron 35.0%
TGCATGATTGCATGAGTATA+TGG + chr2_1:73833947-73833966 Msa0224100:intron 35.0%
!! TTTTTCAAATGAGATGGAGG+GGG - chr2_1:73833988-73834007 None:intergenic 35.0%
ATAGAAAGTGGCAAATAGGT+GGG + chr2_1:73834243-73834262 Msa0224100:intron 35.0%
TGAAGCTCTATCAACAATCA+AGG + chr2_1:73834588-73834607 Msa0224100:CDS 35.0%
GCATTTAAGTCAGAACCATT+GGG - chr2_1:73834616-73834635 None:intergenic 35.0%
AGCATTTAAGTCAGAACCAT+TGG - chr2_1:73834617-73834636 None:intergenic 35.0%
! TTATTAGCTTCATTGAGGTG+AGG + chr2_1:73834638-73834657 Msa0224100:intron 35.0%
TGGGAGTCATAAAACCTAAT+TGG - chr2_1:73834812-73834831 None:intergenic 35.0%
!!! CAAAAGTGTTTTCCTTTTGG+TGG + chr2_1:73834893-73834912 Msa0224100:intron 35.0%
CAAAATACCTTTCCACCAAA+AGG - chr2_1:73834908-73834927 None:intergenic 35.0%
GTACAGTATGCATTTGATTG+TGG + chr2_1:73834973-73834992 Msa0224100:intron 35.0%
GGCAACAAATTGATACGAAT+TGG + chr2_1:73835027-73835046 Msa0224100:intron 35.0%
AAGTTAAAGGTAGTTAGTCG+GGG - chr2_1:73835157-73835176 None:intergenic 35.0%
GAAGTTAAAGGTAGTTAGTC+GGG - chr2_1:73835158-73835177 None:intergenic 35.0%
GGAAGTTAAAGGTAGTTAGT+CGG - chr2_1:73835159-73835178 None:intergenic 35.0%
! CTAACTACCTTTAACTTCCT+CGG + chr2_1:73835160-73835179 Msa0224100:intron 35.0%
! TAACTACCTTTAACTTCCTC+GGG + chr2_1:73835161-73835180 Msa0224100:intron 35.0%
CTCTGATACATTATAGGTTG+AGG - chr2_1:73835188-73835207 None:intergenic 35.0%
CTCAACCTATAATGTATCAG+AGG + chr2_1:73835186-73835205 Msa0224100:intron 35.0%
TAGTCCCTCTGATACATTAT+AGG - chr2_1:73835194-73835213 None:intergenic 35.0%
!! ATTTCCTTGCTTTTGTGTTC+GGG + chr2_1:73835432-73835451 Msa0224100:intron 35.0%
! GATTCCTTTTTATGGGAGTT+GGG + chr2_1:73835457-73835476 Msa0224100:intron 35.0%
! ATTCCTTTTTATGGGAGTTG+GGG + chr2_1:73835458-73835477 Msa0224100:intron 35.0%
! AGATCAAAAAGCACGATAGA+TGG - chr2_1:73835514-73835533 None:intergenic 35.0%
CAAAATTTCAGAAGGACACT+AGG + chr2_1:73835637-73835656 Msa0224100:CDS 35.0%
ACACTAAGCACACACTATAA+AGG - chr2_1:73835783-73835802 None:intergenic 35.0%
GAGTTAAGTCAGTTTACTCT+TGG + chr2_1:73835884-73835903 Msa0224100:intron 35.0%
CAATGGGGATCACTAATATA+GGG - chr2_1:73836117-73836136 None:intergenic 35.0%
GAAAGAAATTATGGAGTAGC+AGG - chr2_1:73836156-73836175 None:intergenic 35.0%
GCTACTCCATAATTTCTTTC+TGG + chr2_1:73836156-73836175 Msa0224100:intron 35.0%
GTCAACAAGGTAACATGATA+AGG - chr2_1:73836200-73836219 None:intergenic 35.0%
! GACTTCATACTTGTTAGATG+TGG + chr2_1:73836217-73836236 Msa0224100:intron 35.0%
ATGTCTAACATGAAAATCGC+CGG - chr2_1:73836301-73836320 None:intergenic 35.0%
! CTCTGTTACTTCTAATGGTT+TGG + chr2_1:73836405-73836424 Msa0224100:intron 35.0%
! TGTTACTTCTAATGGTTTGG+AGG + chr2_1:73836408-73836427 Msa0224100:intron 35.0%
GGAGGAAAAAAAATTGCTCT+AGG + chr2_1:73836426-73836445 Msa0224100:intron 35.0%
!! GCTCTAGGATTAATTGTAAC+AGG + chr2_1:73836441-73836460 Msa0224100:intron 35.0%
!! GACATTTTATTTGGAATCCC+AGG + chr2_1:73836509-73836528 Msa0224100:intron 35.0%
! TTTATTTGGAATCCCAGGTT+CGG + chr2_1:73836514-73836533 Msa0224100:intron 35.0%
CTCAAATAAACACAAACACG+GGG - chr2_1:73836564-73836583 None:intergenic 35.0%
ACTACCTACACCAAAAGAAA+TGG + chr2_1:73836925-73836944 Msa0224100:CDS 35.0%
GCAAAATTATTAGATGACCC+TGG - chr2_1:73836956-73836975 None:intergenic 35.0%
! TGCATATGATGATGCCATAA+AGG + chr2_1:73836973-73836992 Msa0224100:CDS 35.0%
AAGATATTCAAAGTTTGGGG+AGG + chr2_1:73837078-73837097 Msa0224100:CDS 35.0%
TCACAGAACCAAAAGAACAA+TGG - chr2_1:73837219-73837238 None:intergenic 35.0%
!!! TTGTTCTTTTGGTTCTGTGA+TGG + chr2_1:73837219-73837238 Msa0224100:intron 35.0%
ACTGTTCGCTTCACTTAATT+TGG + chr2_1:73837259-73837278 Msa0224100:exon 35.0%
!!! TAAATTTTTTATTGGGGGGG+GGG - chr2_1:73837367-73837386 None:intergenic 35.0%
CTCAAAGGAACTTGAAACAA+AGG - chr2_1:73837392-73837411 None:intergenic 35.0%
! CACAAAAACATTGGTCTCAA+AGG - chr2_1:73837407-73837426 None:intergenic 35.0%
!!! GGTCTTTAGTTTTGTGAAAG+TGG + chr2_1:73837453-73837472 Msa0224100:three_prime_UTR 35.0%
TGTCATAACTTGACATGTGT+TGG + chr2_1:73837512-73837531 Msa0224100:three_prime_UTR 35.0%
CTCAGAAAGAGAAGAGAGAT+GGG + chr2_1:73832475-73832494 Msa0224100:exon 40.0%
!! GCGAGTTTTTGACTGAATTG+AGG - chr2_1:73832598-73832617 None:intergenic 40.0%
CCGTTCCAATATTGATCTCA+AGG + chr2_1:73832621-73832640 Msa0224100:CDS 40.0%
TGTCTTCCTTAATCAGGGTT+AGG + chr2_1:73832651-73832670 Msa0224100:intron 40.0%
GTCTTCCTTAATCAGGGTTA+GGG + chr2_1:73832652-73832671 Msa0224100:intron 40.0%
TCAAAACCCTAAAACTCCCA+AGG + chr2_1:73832871-73832890 Msa0224100:CDS 40.0%
CAAAACCCTAAAACTCCCAA+GGG + chr2_1:73832872-73832891 Msa0224100:CDS 40.0%
! GTTTACCCTTGGGAGTTTTA+GGG - chr2_1:73832880-73832899 None:intergenic 40.0%
! GCATTGTCATCATTCTGAGA+AGG - chr2_1:73833067-73833086 None:intergenic 40.0%
GGGGAAAAGGATTATACTGA+GGG - chr2_1:73833102-73833121 None:intergenic 40.0%
AGGGGAAAAGGATTATACTG+AGG - chr2_1:73833103-73833122 None:intergenic 40.0%
ATTTGTGCGCAAATTGTGTG+TGG + chr2_1:73833155-73833174 Msa0224100:intron 40.0%
!! TGTGGTTGTTTGATTTGGAG+TGG + chr2_1:73833173-73833192 Msa0224100:intron 40.0%
AACAAATTCAGGGGGCAAAT+TGG - chr2_1:73833203-73833222 None:intergenic 40.0%
GACTTCAGAGACCAATTTGA+TGG + chr2_1:73833364-73833383 Msa0224100:intron 40.0%
TTCGGCCTCTTCAATTTCAT+TGG + chr2_1:73833513-73833532 Msa0224100:intron 40.0%
TGAGTTCTCATTAGATGTCG+GGG - chr2_1:73833624-73833643 None:intergenic 40.0%
AATTGGCACGTACCAATTCA+GGG - chr2_1:73834210-73834229 None:intergenic 40.0%
CATAGAAAGTGGCAAATAGG+TGG + chr2_1:73834242-73834261 Msa0224100:intron 40.0%
TCAACAATCAAGGATCCCAA+TGG + chr2_1:73834598-73834617 Msa0224100:CDS 40.0%
TCACAGCAAGTCAAGCATTT+GGG - chr2_1:73834831-73834850 None:intergenic 40.0%
ATCACAGCAAGTCAAGCATT+TGG - chr2_1:73834832-73834851 None:intergenic 40.0%
! GTGTTTTCCTTTTGGTGGAA+AGG + chr2_1:73834898-73834917 Msa0224100:intron 40.0%
ATTGGAATTGCAGTACTGTG+AGG + chr2_1:73835045-73835064 Msa0224100:intron 40.0%
AAGAAGGAAGGAGAGAGTTT+GGG - chr2_1:73835094-73835113 None:intergenic 40.0%
TAAGAAGGAAGGAGAGAGTT+TGG - chr2_1:73835095-73835114 None:intergenic 40.0%
CTCTCTCCTTCCTTCTTATT+TGG + chr2_1:73835097-73835116 Msa0224100:intron 40.0%
GTGTTGCCAAATAAGAAGGA+AGG - chr2_1:73835106-73835125 None:intergenic 40.0%
CAAAGCGACTGATATTGAAC+TGG - chr2_1:73835303-73835322 None:intergenic 40.0%
!! TTCGGGTGGATTCCTTTTTA+TGG + chr2_1:73835449-73835468 Msa0224100:intron 40.0%
!! TCGGGTGGATTCCTTTTTAT+GGG + chr2_1:73835450-73835469 Msa0224100:intron 40.0%
! GGATTCCTTTTTATGGGAGT+TGG + chr2_1:73835456-73835475 Msa0224100:intron 40.0%
TGCGAAGTAAGCTACATTTC+TGG - chr2_1:73835491-73835510 None:intergenic 40.0%
CACTAGGTGCAAAGTTAAGA+AGG + chr2_1:73835653-73835672 Msa0224100:CDS 40.0%
TTAAGAAGGCTTGTCAGTCA+AGG + chr2_1:73835667-73835686 Msa0224100:CDS 40.0%
TAAGAAGGCTTGTCAGTCAA+GGG + chr2_1:73835668-73835687 Msa0224100:CDS 40.0%
CAGTCAAGGGAAACTTGAAA+AGG + chr2_1:73835681-73835700 Msa0224100:CDS 40.0%
GATCCACTGTATTCCAAAGT+CGG + chr2_1:73835926-73835945 Msa0224100:intron 40.0%
!! TAACCGACTTTGGAATACAG+TGG - chr2_1:73835932-73835951 None:intergenic 40.0%
!! ACGCATTGATTAACCGACTT+TGG - chr2_1:73835942-73835961 None:intergenic 40.0%
GCAATGGGGATCACTAATAT+AGG - chr2_1:73836118-73836137 None:intergenic 40.0%
ACCACTTGACTGTAACAACA+GGG - chr2_1:73836478-73836497 None:intergenic 40.0%
AACCACTTGACTGTAACAAC+AGG - chr2_1:73836479-73836498 None:intergenic 40.0%
AGTCAAGTGGTTTAACTGTG+AGG + chr2_1:73836487-73836506 Msa0224100:intron 40.0%
AATAAACACAAACACGGGGA+GGG - chr2_1:73836560-73836579 None:intergenic 40.0%
AAATAAACACAAACACGGGG+AGG - chr2_1:73836561-73836580 None:intergenic 40.0%
!!! TTGAGTATGTTTTGGCCACT+AGG + chr2_1:73836579-73836598 Msa0224100:intron 40.0%
!! TTTTTCTGCTATTGGCCTAG+TGG - chr2_1:73836597-73836616 None:intergenic 40.0%
! CACGTTCAATCTTTCTAGCA+TGG - chr2_1:73836703-73836722 None:intergenic 40.0%
! TGTAACCATTTTGTACCTGC+AGG - chr2_1:73836859-73836878 None:intergenic 40.0%
AAGATAAAGGACACCTCAGT+GGG + chr2_1:73836878-73836897 Msa0224100:CDS 40.0%
!! AGGTCCATTTCTTTTGGTGT+AGG - chr2_1:73836932-73836951 None:intergenic 40.0%
AATTATTAGATGACCCTGGC+AGG - chr2_1:73836952-73836971 None:intergenic 40.0%
AGTTTCGGAAGCTTCCTTTA+TGG - chr2_1:73836990-73837009 None:intergenic 40.0%
!! CGCGGAGAATAAGTCATTTT+TGG + chr2_1:73837030-73837049 Msa0224100:CDS 40.0%
!!! AAATTTTTTATTGGGGGGGG+GGG - chr2_1:73837366-73837385 None:intergenic 40.0%
GCTCAGAAAGAGAAGAGAGA+TGG + chr2_1:73832474-73832493 Msa0224100:exon 45.0%
TGGGAAATCAGAAGCAGAAG+TGG + chr2_1:73832494-73832513 Msa0224100:CDS 45.0%
GAAGAAGAAGCTCTGCATCA+AGG + chr2_1:73832526-73832545 Msa0224100:CDS 45.0%
GGTGTTCAGAAATATGGTGC+TGG + chr2_1:73832547-73832566 Msa0224100:CDS 45.0%
!!! GGAGTTTTAGGGTTTTGACC+AGG - chr2_1:73832869-73832888 None:intergenic 45.0%
! GGTTTACCCTTGGGAGTTTT+AGG - chr2_1:73832881-73832900 None:intergenic 45.0%
! TGTCATCATTCTGAGAAGGC+TGG - chr2_1:73833063-73833082 None:intergenic 45.0%
TGCAATTAGGCAAAAGACCC+TGG - chr2_1:73833474-73833493 None:intergenic 45.0%
! TGTCCCCTTTTTCCTCTGAA+AGG + chr2_1:73833731-73833750 Msa0224100:intron 45.0%
! AGGAAGCACGAATCACATGT+TGG - chr2_1:73833780-73833799 None:intergenic 45.0%
! GATGGAGGGGGTTTTCAATT+TGG - chr2_1:73833976-73833995 None:intergenic 45.0%
ACTCCATTTGCCAGGAATTC+CGG - chr2_1:73834129-73834148 None:intergenic 45.0%
ACCAATTCAGGGTTCAAGCT+GGG - chr2_1:73834199-73834218 None:intergenic 45.0%
TACCAATTCAGGGTTCAAGC+TGG - chr2_1:73834200-73834219 None:intergenic 45.0%
GAATTGGCACGTACCAATTC+AGG - chr2_1:73834211-73834230 None:intergenic 45.0%
AGATGAAGGGCTTAGGGTTT+AGG + chr2_1:73834298-73834317 Msa0224100:intron 45.0%
TTGAGGTGAGGTGACTTTCA+TGG + chr2_1:73834650-73834669 Msa0224100:intron 45.0%
TGAGGTGAGGTGACTTTCAT+GGG + chr2_1:73834651-73834670 Msa0224100:intron 45.0%
TGAATTGCGGCTGTCCAATT+AGG + chr2_1:73834795-73834814 Msa0224100:intron 45.0%
AGGAGAGAGTTTGGGCAATT+GGG - chr2_1:73835086-73835105 None:intergenic 45.0%
AAGGAGAGAGTTTGGGCAAT+TGG - chr2_1:73835087-73835106 None:intergenic 45.0%
GGGATCTTCTTGAGATGGTT+GGG - chr2_1:73835137-73835156 None:intergenic 45.0%
AGCGACTGATATTGAACTGG+TGG - chr2_1:73835300-73835319 None:intergenic 45.0%
AGTCCCCAACTCCCATAAAA+AGG - chr2_1:73835464-73835483 None:intergenic 45.0%
! TTTTATGGGAGTTGGGGACT+TGG + chr2_1:73835464-73835483 Msa0224100:intron 45.0%
TTTATGGGAGTTGGGGACTT+GGG + chr2_1:73835465-73835484 Msa0224100:intron 45.0%
CATGTTAGACATGCGTCTGT+TGG + chr2_1:73836309-73836328 Msa0224100:intron 45.0%
CACTTGACTGTAACAACAGG+GGG - chr2_1:73836476-73836495 None:intergenic 45.0%
CCACTTGACTGTAACAACAG+GGG - chr2_1:73836477-73836496 None:intergenic 45.0%
ATAAACACAAACACGGGGAG+GGG - chr2_1:73836559-73836578 None:intergenic 45.0%
AAGGAGAGGGAGATAGAGAA+GGG + chr2_1:73836659-73836678 Msa0224100:intron 45.0%
ACTAATCAGTCATCACCTGC+AGG + chr2_1:73836841-73836860 Msa0224100:intron 45.0%
CATCACCTGCAGGTACAAAA+TGG + chr2_1:73836851-73836870 Msa0224100:intron 45.0%
CAAGATAAAGGACACCTCAG+TGG + chr2_1:73836877-73836896 Msa0224100:CDS 45.0%
AGATAAAGGACACCTCAGTG+GGG + chr2_1:73836879-73836898 Msa0224100:CDS 45.0%
CAAAAGAAATGGACCTGCCA+GGG + chr2_1:73836936-73836955 Msa0224100:CDS 45.0%
AAGTCTGCAGGCTAGAGTTT+CGG - chr2_1:73837005-73837024 None:intergenic 45.0%
!!! TCTTTTGGTTCTGTGATGGC+AGG + chr2_1:73837223-73837242 Msa0224100:intron 45.0%
!!! AATTTTTTATTGGGGGGGGG+GGG - chr2_1:73837365-73837384 None:intergenic 45.0%
ACTCCCAAGGGTAAACCATC+TGG + chr2_1:73832884-73832903 Msa0224100:CDS 50.0%
CTCCCAAGGGTAAACCATCT+GGG + chr2_1:73832885-73832904 Msa0224100:CDS 50.0%
GACCCAGATGGTTTACCCTT+GGG - chr2_1:73832890-73832909 None:intergenic 50.0%
AGACCCAGATGGTTTACCCT+TGG - chr2_1:73832891-73832910 None:intergenic 50.0%
GGAGAAGGAGTAGCATTGCT+TGG - chr2_1:73832923-73832942 None:intergenic 50.0%
GGTGTAGCAGCAACATTGAC+CGG - chr2_1:73833007-73833026 None:intergenic 50.0%
CTCAAGCTCAGACTCCGATT+CGG + chr2_1:73833026-73833045 Msa0224100:CDS 50.0%
TGGCTAGTAGGAGTCCGAAT+CGG - chr2_1:73833043-73833062 None:intergenic 50.0%
! TTCTGAGAAGGCTGGCTAGT+AGG - chr2_1:73833055-73833074 None:intergenic 50.0%
!! CTCTAAAACCCCGGAATTCC+TGG + chr2_1:73834116-73834135 Msa0224100:intron 50.0%
TCCATTTGCCAGGAATTCCG+GGG - chr2_1:73834127-73834146 None:intergenic 50.0%
CTCCATTTGCCAGGAATTCC+GGG - chr2_1:73834128-73834147 None:intergenic 50.0%
GGAATTCCTGGCAAATGGAG+TGG + chr2_1:73834128-73834147 Msa0224100:intron 50.0%
ACCCAGCTTGAACCCTGAAT+TGG + chr2_1:73834195-73834214 Msa0224100:intron 50.0%
GAGGTGAGGTGACTTTCATG+GGG + chr2_1:73834652-73834671 Msa0224100:intron 50.0%
AGGTGAGGTGACTTTCATGG+GGG + chr2_1:73834653-73834672 Msa0224100:intron 50.0%
AGAGAGTTTGGGCAATTGGG+AGG - chr2_1:73835083-73835102 None:intergenic 50.0%
GGGGATCTTCTTGAGATGGT+TGG - chr2_1:73835138-73835157 None:intergenic 50.0%
AGTCGGGGATCTTCTTGAGA+TGG - chr2_1:73835142-73835161 None:intergenic 50.0%
TGAGGTCCCGAGGAAGTTAA+AGG - chr2_1:73835170-73835189 None:intergenic 50.0%
! CATTATAGGTTGAGGTCCCG+AGG - chr2_1:73835180-73835199 None:intergenic 50.0%
!! TCCTTGCTTTTGTGTTCGGG+TGG + chr2_1:73835435-73835454 Msa0224100:intron 50.0%
TCCACCCGAACACAAAAGCA+AGG - chr2_1:73835439-73835458 None:intergenic 50.0%
! GCAAGTTGTGCTTTTGCTGC+AGG - chr2_1:73835609-73835628 None:intergenic 50.0%
CCCCTGTTGTTACAGTCAAG+TGG + chr2_1:73836474-73836493 Msa0224100:intron 50.0%
TAAACACAAACACGGGGAGG+GGG - chr2_1:73836558-73836577 None:intergenic 50.0%
!! TCTTGAGTCCGTGTTGCTTG+AGG + chr2_1:73836636-73836655 Msa0224100:intron 50.0%
CTCTCCTTCCTCAAGCAACA+CGG - chr2_1:73836647-73836666 None:intergenic 50.0%
!! GTGTTGCTTGAGGAAGGAGA+GGG + chr2_1:73836646-73836665 Msa0224100:intron 50.0%
GAAGGAGAGGGAGATAGAGA+AGG + chr2_1:73836658-73836677 Msa0224100:intron 50.0%
GATAAAGGACACCTCAGTGG+GGG + chr2_1:73836880-73836899 Msa0224100:CDS 50.0%
! CCTGGCAGGTCCATTTCTTT+TGG - chr2_1:73836938-73836957 None:intergenic 50.0%
CCAAAAGAAATGGACCTGCC+AGG + chr2_1:73836935-73836954 Msa0224100:CDS 50.0%
!! TTTTGGCTACTGCAGCAGTC+AGG + chr2_1:73837047-73837066 Msa0224100:CDS 50.0%
TTTGGCTACTGCAGCAGTCA+GGG + chr2_1:73837048-73837067 Msa0224100:CDS 50.0%
TCTGTGATGGCAGGTATGCT+CGG + chr2_1:73837232-73837251 Msa0224100:intron 50.0%
!!! ATTTTTTATTGGGGGGGGGG+GGG - chr2_1:73837364-73837383 None:intergenic 50.0%
GGAGTAGCATTGCTTGGAGC+AGG - chr2_1:73832917-73832936 None:intergenic 55.0%
CGAATCGGAGTCTGAGCTTG+AGG - chr2_1:73833028-73833047 None:intergenic 55.0%
!! GGGGGGTTTCTCTAAAACCC+CGG + chr2_1:73834107-73834126 Msa0224100:intron 55.0%
ACCCCGGAATTCCTGGCAAA+TGG + chr2_1:73834123-73834142 Msa0224100:intron 55.0%
GTCACTCCACTCCATTTGCC+AGG - chr2_1:73834137-73834156 None:intergenic 55.0%
!! GAGTCCGTGTTGCTTGAGGA+AGG + chr2_1:73836640-73836659 Msa0224100:intron 55.0%
!! CGTGTTGCTTGAGGAAGGAG+AGG + chr2_1:73836645-73836664 Msa0224100:intron 55.0%
AGCTAACTTCACCCCCACTG+AGG - chr2_1:73836894-73836913 None:intergenic 55.0%
!!! TTTTTTATTGGGGGGGGGGG+GGG - chr2_1:73837363-73837382 None:intergenic 55.0%
GGAGCAGGAGAAGACCCAGA+TGG - chr2_1:73832902-73832921 None:intergenic 60.0%
! GGAGTACCAGGAGCAGGAGA+CGG - chr2_1:73832944-73832963 None:intergenic 60.0%
!! GCAGAAGCAGCAGGAGTACC+AGG - chr2_1:73832956-73832975 None:intergenic 60.0%
! GGTACTCCTGCTGCTTCTGC+TGG + chr2_1:73832956-73832975 Msa0224100:CDS 60.0%
! GGAGTACCAGCAGAAGCAGC+AGG - chr2_1:73832965-73832984 None:intergenic 60.0%
TGCTGCTGCTGCTGTTGCTC+CGG + chr2_1:73832985-73833004 Msa0224100:CDS 60.0%
! TGGAATCCCAGGTTCGGTCC+AGG + chr2_1:73836520-73836539 Msa0224100:intron 60.0%
! GGAATCCCAGGTTCGGTCCA+GGG + chr2_1:73836521-73836540 Msa0224100:intron 60.0%
! AGGGGGAAGTTTGGTGACCC+TGG - chr2_1:73836541-73836560 None:intergenic 60.0%
AACACGGGGAGGGGGAAGTT+TGG - chr2_1:73836550-73836569 None:intergenic 60.0%
!! AGCCTGCAGACTTGCTGACG+CGG + chr2_1:73837012-73837031 Msa0224100:CDS 60.0%
! TTTTTATTGGGGGGGGGGGG+GGG - chr2_1:73837362-73837381 None:intergenic 60.0%
CCAGGAGCAGGAGACGGAGA+AGG - chr2_1:73832938-73832957 None:intergenic 65.0%
CCTTCTCCGTCTCCTGCTCC+TGG + chr2_1:73832935-73832954 Msa0224100:CDS 65.0%
!! GCAGCAGGAGTACCAGGAGC+AGG - chr2_1:73832950-73832969 None:intergenic 65.0%
GGAGCAACAGCAGCAGCAGC+AGG - chr2_1:73832986-73833005 None:intergenic 65.0%
GGTGACCCTGGACCGAACCT+GGG - chr2_1:73836529-73836548 None:intergenic 65.0%
TGGTGACCCTGGACCGAACC+TGG - chr2_1:73836530-73836549 None:intergenic 65.0%
CTCCGCGTCAGCAAGTCTGC+AGG - chr2_1:73837017-73837036 None:intergenic 65.0%
! TTTTATTGGGGGGGGGGGGG+GGG - chr2_1:73837361-73837380 None:intergenic 65.0%
TTTATTGGGGGGGGGGGGGG+GGG - chr2_1:73837360-73837379 None:intergenic 70.0%
TTATTGGGGGGGGGGGGGGG+GGG - chr2_1:73837359-73837378 None:intergenic 75.0%
! TATTGGGGGGGGGGGGGGGG+GGG - chr2_1:73837358-73837377 None:intergenic 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - chr2_1:73837357-73837376 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr2_1:73837356-73837375 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr2_1:73837355-73837374 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 73832421 73837644 73832421 ID=Msa0224100;Name=Msa0224100
chr2_1 mRNA 73832421 73837644 73832421 ID=Msa0224100-mRNA-1;Parent=Msa0224100;Name=Msa0224100-mRNA-1;_AED=0.14;_eAED=0.14;_QI=72|1|1|1|1|1|6|368|301
chr2_1 exon 73832421 73832642 73832421 ID=Msa0224100-mRNA-1:exon:21741;Parent=Msa0224100-mRNA-1
chr2_1 exon 73832839 73833104 73832839 ID=Msa0224100-mRNA-1:exon:21742;Parent=Msa0224100-mRNA-1
chr2_1 exon 73834570 73834654 73834570 ID=Msa0224100-mRNA-1:exon:21743;Parent=Msa0224100-mRNA-1
chr2_1 exon 73835613 73835702 73835613 ID=Msa0224100-mRNA-1:exon:21744;Parent=Msa0224100-mRNA-1
chr2_1 exon 73836863 73837145 73836863 ID=Msa0224100-mRNA-1:exon:21745;Parent=Msa0224100-mRNA-1
chr2_1 exon 73837245 73837644 73837245 ID=Msa0224100-mRNA-1:exon:21746;Parent=Msa0224100-mRNA-1
chr2_1 five_prime_UTR 73832421 73832492 73832421 ID=Msa0224100-mRNA-1:five_prime_utr;Parent=Msa0224100-mRNA-1
chr2_1 CDS 73832493 73832642 73832493 ID=Msa0224100-mRNA-1:cds;Parent=Msa0224100-mRNA-1
chr2_1 CDS 73832839 73833104 73832839 ID=Msa0224100-mRNA-1:cds;Parent=Msa0224100-mRNA-1
chr2_1 CDS 73834570 73834654 73834570 ID=Msa0224100-mRNA-1:cds;Parent=Msa0224100-mRNA-1
chr2_1 CDS 73835613 73835702 73835613 ID=Msa0224100-mRNA-1:cds;Parent=Msa0224100-mRNA-1
chr2_1 CDS 73836863 73837145 73836863 ID=Msa0224100-mRNA-1:cds;Parent=Msa0224100-mRNA-1
chr2_1 CDS 73837245 73837276 73837245 ID=Msa0224100-mRNA-1:cds;Parent=Msa0224100-mRNA-1
chr2_1 three_prime_UTR 73837277 73837644 73837277 ID=Msa0224100-mRNA-1:three_prime_utr;Parent=Msa0224100-mRNA-1
Gene Sequence

>Msa0224100

ATGGGAAATCAGAAGCAGAAGTGGACAGCTGAAGAAGAAGAAGCTCTGCATCAAGGTGTTCAGAAATATGGTGCTGGAAAATGGAAGCACATTCTCAAAGACCCTCAATTCAGTCAAAAACTCGCTAGCCGTTCCAATATTGATCTCAAGGATAAATGGCGGAATTTGAATGTTTTTCCTGGTCAAAACCCTAAAACTCCCAAGGGTAAACCATCTGGGTCTTCTCCTGCTCCAAGCAATGCTACTCCTTCTCCGTCTCCTGCTCCTGGTACTCCTGCTGCTTCTGCTGGTACTCCTGCTGCTGCTGCTGTTGCTCCGGTCAATGTTGCTGCTACACCTCAAGCTCAGACTCCGATTCGGACTCCTACTAGCCAGCCTTCTCAGAATGATGACAATGCTGCCAAGATTTACCCTCAGTACAATTCATTGGTTTTTGAAGCTCTATCAACAATCAAGGATCCCAATGGTTCTGACTTAAATGCTATTATTAGCTTCATTGAGCAAAAGCACAACTTGCCTCAAAGTCAAAATTTCAGAAGGACACTAGGTGCAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGATAAAGGACACCTCAGTGGGGGTGAAGTTAGCTGATGACTCAAAACTACCTACACCAAAAGAAATGGACCTGCCAGGGTCATCTAATAATTTTGCATATGATGATGCCATAAAGGAAGCTTCCGAAACTCTAGCCTGCAGACTTGCTGACGCGGAGAATAAGTCATTTTTGGCTACTGCAGCAGTCAGGGAGACAGAAAGATATTCAAAGTTTGGGGAGGAAAATGATGCAATGTTAAAGATTGCAGAAGAGATTTATGCAAAATGTATGCTCGGTGAAACTGTTCGCTTCACTTAA

Protein sequence

>Msa0224100

MGNQKQKWTAEEEEALHQGVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNVFPGQNPKTPKGKPSGSSPAPSNATPSPSPAPGTPAASAGTPAAAAVAPVNVAATPQAQTPIRTPTSQPSQNDDNAAKIYPQYNSLVFEALSTIKDPNGSDLNAIISFIEQKHNLPQSQNFRRTLGAKLRRLVSQGKLEKVQNGYKIKDTSVGVKLADDSKLPTPKEMDLPGSSNNFAYDDAIKEASETLACRLADAENKSFLATAAVRETERYSKFGEENDAMLKIAEEIYAKCMLGETVRFT*