Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226600 | XP_003597838.1 | 89.873 | 158 | 5 | 1 | 1 | 147 | 1 | 158 | 1.90e-99 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226600 | sp|Q8LBK6|GRS15_ARATH | 59.756 | 164 | 49 | 4 | 1 | 147 | 5 | 168 | 1.37e-63 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226600 | G7IMH4 | 89.873 | 158 | 5 | 1 | 1 | 147 | 1 | 158 | 9.06e-100 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0226600 | Msa0687020 | 0.808246 | 3.403151e-50 | -8.615850e-47 |
| Msa0226600 | Msa0788710 | 0.810423 | 1.161164e-50 | -8.615850e-47 |
| Msa0226600 | Msa0967370 | 0.802235 | 6.178047e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226600 | MtrunA17_Chr2g0332591 | 89.873 | 158 | 5 | 1 | 1 | 147 | 1 | 158 | 1.74e-103 | 292 |
| Msa0226600 | MtrunA17_Chr4g0047431 | 41.600 | 125 | 62 | 1 | 29 | 142 | 259 | 383 | 2.34e-25 | 100 |
| Msa0226600 | MtrunA17_Chr4g0047431 | 41.584 | 101 | 48 | 1 | 53 | 142 | 154 | 254 | 6.23e-24 | 96.3 |
| Msa0226600 | MtrunA17_Chr4g0047431 | 42.391 | 92 | 41 | 1 | 63 | 142 | 400 | 491 | 7.99e-22 | 90.1 |
| Msa0226600 | MtrunA17_Chr4g0006981 | 35.417 | 96 | 48 | 2 | 55 | 136 | 212 | 307 | 2.30e-14 | 68.6 |
| Msa0226600 | MtrunA17_Chr7g0249071 | 44.444 | 54 | 26 | 1 | 96 | 145 | 77 | 130 | 5.30e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226600 | AT3G15660.2 | 59.756 | 164 | 49 | 4 | 1 | 147 | 5 | 168 | 1.39e-64 | 195 |
| Msa0226600 | AT3G15660.1 | 59.756 | 164 | 49 | 4 | 1 | 147 | 5 | 168 | 1.39e-64 | 195 |
| Msa0226600 | AT4G04950.1 | 43.564 | 101 | 46 | 1 | 54 | 143 | 152 | 252 | 5.65e-26 | 102 |
| Msa0226600 | AT4G04950.1 | 42.453 | 106 | 48 | 2 | 50 | 142 | 276 | 381 | 3.72e-22 | 91.7 |
| Msa0226600 | AT4G04950.1 | 41.000 | 100 | 48 | 1 | 54 | 142 | 389 | 488 | 1.41e-21 | 90.1 |
| Msa0226600 | AT3G54900.1 | 38.655 | 119 | 57 | 3 | 42 | 145 | 55 | 172 | 1.51e-23 | 90.9 |
| Msa0226600 | AT2G38270.1 | 37.000 | 100 | 49 | 2 | 55 | 140 | 193 | 292 | 5.75e-17 | 75.9 |
Find 38 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACTAGTTCCAGTTATTA+TGG | 0.218267 | 2_1:+77117915 | Msa0226600:CDS |
| AAAATGTTCCTAGCACTTAA+AGG | 0.239296 | 2_1:-77119199 | None:intergenic |
| TCAGTCTTGACTGTCATTTC+AGG | 0.241047 | 2_1:-77120468 | None:intergenic |
| ACTAATAAACTTGAGAATTC+TGG | 0.269273 | 2_1:+77117996 | Msa0226600:CDS |
| TTCATTAAGGGAGAGTTTAT+TGG | 0.294164 | 2_1:+77120071 | Msa0226600:CDS |
| TAGTCACATTATTATAAATC+AGG | 0.349615 | 2_1:-77120503 | None:intergenic |
| GTATCTCATTCCATAATAAC+TGG | 0.376771 | 2_1:-77117925 | None:intergenic |
| CCCTTCATGTAAATCATAAC+AGG | 0.387480 | 2_1:-77118159 | None:intergenic |
| AATCCACACTGTGGGAAATC+AGG | 0.415306 | 2_1:-77118186 | None:intergenic |
| TTTGTCAAGTATTGTTGAGC+AGG | 0.430543 | 2_1:+77118025 | Msa0226600:CDS |
| TCCTGTTATGATTTACATGA+AGG | 0.434713 | 2_1:+77118158 | Msa0226600:CDS |
| CAGATGTTCCTTTAAGTGCT+AGG | 0.438137 | 2_1:+77119191 | Msa0226600:intron |
| GAATTCTCAAGTTTATTAGT+TGG | 0.447427 | 2_1:-77117993 | None:intergenic |
| CTTGTAGAGTGGTGAGTTGA+AGG | 0.457610 | 2_1:+77120198 | Msa0226600:intron |
| AAGCAGTAAAAGCACAACTA+AGG | 0.522251 | 2_1:+77120244 | Msa0226600:exon |
| ATTAAGGGAGAGTTTATTGG+TGG | 0.524548 | 2_1:+77120074 | Msa0226600:CDS |
| TAAAAGCACAACTAAGGTGA+TGG | 0.525816 | 2_1:+77120250 | Msa0226600:exon |
| ATGAAAACTTGTGGAAATGT+TGG | 0.528223 | 2_1:-77120053 | None:intergenic |
| ACGCAGACAACTTCGAACTA+AGG | 0.530669 | 2_1:-77116308 | None:intergenic |
| CCTGTTATGATTTACATGAA+GGG | 0.540704 | 2_1:+77118159 | Msa0226600:CDS |
| TGATGGGATTTAAAAGAGAG+AGG | 0.541927 | 2_1:+77120267 | Msa0226600:three_prime_UTR |
| AGCGATTCCCTTGAAAAGAA+TGG | 0.556100 | 2_1:-77116377 | None:intergenic |
| AAAATGCTGTAAAAGCCTAC+AGG | 0.564696 | 2_1:+77119239 | Msa0226600:CDS |
| TATTGTTCTTAGTATGCACC+AGG | 0.565729 | 2_1:+77120103 | Msa0226600:CDS |
| AAAAGCACAACTAAGGTGAT+GGG | 0.568881 | 2_1:+77120251 | Msa0226600:exon |
| AGTCACATTATTATAAATCA+GGG | 0.570757 | 2_1:-77120502 | None:intergenic |
| TGGAATGAGATACACAACTA+AGG | 0.585500 | 2_1:+77117935 | Msa0226600:CDS |
| AACAAATAAACAATAAAGCA+AGG | 0.587219 | 2_1:-77120442 | None:intergenic |
| ATACATCAGAATTGCTTCCA+TGG | 0.588974 | 2_1:+77116351 | Msa0226600:exon |
| CTTGAAAAGAATGGTCGCCA+TGG | 0.597220 | 2_1:-77116368 | None:intergenic |
| TAATAATGTACAGGATGTCA+AGG | 0.615496 | 2_1:+77118131 | Msa0226600:intron |
| GAGAACTAAATCCACACTGT+GGG | 0.625350 | 2_1:-77118194 | None:intergenic |
| TCTCCCTTAATGAAAACTTG+TGG | 0.625424 | 2_1:-77120062 | None:intergenic |
| GTACCTGATTTCCCACAGTG+TGG | 0.627551 | 2_1:+77118183 | Msa0226600:CDS |
| TTTGAAGTCATCGTGTGTGT+CGG | 0.634139 | 2_1:-77117970 | None:intergenic |
| GGTTGGAAAACTTACACGTG+TGG | 0.650775 | 2_1:-77116413 | None:intergenic |
| ACAGATTGCATCGAACAAGT+CGG | 0.673003 | 2_1:-77120299 | None:intergenic |
| AGAGAACTAAATCCACACTG+TGG | 0.712972 | 2_1:-77118195 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr2_1:77116735-77116754 | Msa0226600:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr2_1:77116736-77116755 | Msa0226600:intron | 10.0% |
| !! | AGTAAATTTAAAAAGAAAAA+GGG | - | chr2_1:77117437-77117456 | None:intergenic | 10.0% |
| !! | AAGTAAATTTAAAAAGAAAA+AGG | - | chr2_1:77117438-77117457 | None:intergenic | 10.0% |
| !!! | AATGTTAATTTTAAAAAACT+AGG | - | chr2_1:77119325-77119344 | None:intergenic | 10.0% |
| !! | GAATTATGTTAATGTTAAAA+TGG | + | chr2_1:77116609-77116628 | Msa0226600:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr2_1:77116737-77116756 | Msa0226600:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr2_1:77116800-77116819 | Msa0226600:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr2_1:77116801-77116820 | Msa0226600:intron | 15.0% |
| !!! | ACACTTTTTTTTTTAGTAAA+TGG | + | chr2_1:77116871-77116890 | Msa0226600:intron | 15.0% |
| !!! | CACTTTTTTTTTTAGTAAAT+GGG | + | chr2_1:77116872-77116891 | Msa0226600:intron | 15.0% |
| !!! | GTTAAAGTTTTAAAACAATA+TGG | + | chr2_1:77118222-77118241 | Msa0226600:intron | 15.0% |
| !!! | GAAACTAAAACAATTTTAAA+GGG | + | chr2_1:77118922-77118941 | Msa0226600:intron | 15.0% |
| !!! | TCAATTGTTTAATTTACTTA+TGG | + | chr2_1:77119046-77119065 | Msa0226600:intron | 15.0% |
| !! | TAACATTTACAATAAGTTAA+AGG | + | chr2_1:77119338-77119357 | Msa0226600:intron | 15.0% |
| !!! | AAAATTAGGGTTTGATTTTA+GGG | - | chr2_1:77116437-77116456 | None:intergenic | 20.0% |
| !! | CAGAAAAAAGAAGAAAATTA+GGG | - | chr2_1:77116450-77116469 | None:intergenic | 20.0% |
| !!! | TTTTTCTATTTTACGGTATT+GGG | + | chr2_1:77116494-77116513 | Msa0226600:intron | 20.0% |
| !! | TCTGATAAATAAAAATTGCA+GGG | - | chr2_1:77116559-77116578 | None:intergenic | 20.0% |
| !!! | TTTTATTTATCAGAGTGAAA+TGG | + | chr2_1:77116565-77116584 | Msa0226600:intron | 20.0% |
| !! | TTTATTTATCAGAGTGAAAT+GGG | + | chr2_1:77116566-77116585 | Msa0226600:intron | 20.0% |
| !! | TTATGTTAATGTTAAAATGG+AGG | + | chr2_1:77116612-77116631 | Msa0226600:intron | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr2_1:77116760-77116779 | Msa0226600:intron | 20.0% |
| !!! | TTGAAATGACTCAATTATTT+TGG | + | chr2_1:77116847-77116866 | Msa0226600:intron | 20.0% |
| !!! | TGAAATGACTCAATTATTTT+GGG | + | chr2_1:77116848-77116867 | Msa0226600:intron | 20.0% |
| !!! | AAATCTTGAAAAGCTTTTTA+AGG | + | chr2_1:77116938-77116957 | Msa0226600:intron | 20.0% |
| !! | TAATTATGTAAGTTTGATCA+TGG | + | chr2_1:77117116-77117135 | Msa0226600:intron | 20.0% |
| !!! | TTTTCGTGTTATGATTTAAA+TGG | + | chr2_1:77117812-77117831 | Msa0226600:intron | 20.0% |
| !!! | ATTGTGTTTTTTGTATGTAA+TGG | + | chr2_1:77117864-77117883 | Msa0226600:intron | 20.0% |
| !! | TTACATTTCTACAAACATTA+TGG | + | chr2_1:77118408-77118427 | Msa0226600:intron | 20.0% |
| !!! | TTTGGTTTTATTATGTTGAA+TGG | + | chr2_1:77118850-77118869 | Msa0226600:intron | 20.0% |
| !!! | GGAAACTAAAACAATTTTAA+AGG | + | chr2_1:77118921-77118940 | Msa0226600:intron | 20.0% |
| !!! | AAAACACATTTGAAACTTAA+AGG | - | chr2_1:77119025-77119044 | None:intergenic | 20.0% |
| !! | CTGATCTTCATTAATATATT+TGG | - | chr2_1:77119464-77119483 | None:intergenic | 20.0% |
| !!! | AGAATTTTGATATCCTTTAA+TGG | + | chr2_1:77119579-77119598 | Msa0226600:intron | 20.0% |
| !!! | TGAAGTTACAGTTTTATTTT+TGG | + | chr2_1:77119700-77119719 | Msa0226600:intron | 20.0% |
| !!! | ATTTTCAAACATATTAGTAC+CGG | + | chr2_1:77119914-77119933 | Msa0226600:intron | 20.0% |
| !! | AGGGAAAAGTAAATTATATT+TGG | - | chr2_1:77119953-77119972 | None:intergenic | 20.0% |
| !! | CAATTATTAAGCTGTTAAAA+GGG | - | chr2_1:77119972-77119991 | None:intergenic | 20.0% |
| !! | TCAATTATTAAGCTGTTAAA+AGG | - | chr2_1:77119973-77119992 | None:intergenic | 20.0% |
| !!! | TTGACGAATAAAAATTTGTT+AGG | + | chr2_1:77120394-77120413 | Msa0226600:three_prime_UTR | 20.0% |
| !! | AACAAATAAACAATAAAGCA+AGG | - | chr2_1:77120445-77120464 | None:intergenic | 20.0% |
| !! | AGTCACATTATTATAAATCA+GGG | - | chr2_1:77120505-77120524 | None:intergenic | 20.0% |
| !! | TAGTCACATTATTATAAATC+AGG | - | chr2_1:77120506-77120525 | None:intergenic | 20.0% |
| !!! | GAAAATTAGGGTTTGATTTT+AGG | - | chr2_1:77116438-77116457 | None:intergenic | 25.0% |
| ! | GCAGAAAAAAGAAGAAAATT+AGG | - | chr2_1:77116451-77116470 | None:intergenic | 25.0% |
| !!! | TCCATGCTTTTTCTATTTTA+CGG | + | chr2_1:77116487-77116506 | Msa0226600:intron | 25.0% |
| !! | CTTTTTCTATTTTACGGTAT+TGG | + | chr2_1:77116493-77116512 | Msa0226600:intron | 25.0% |
| ! | ATAAATAAAAATTGCAGGGT+GGG | - | chr2_1:77116555-77116574 | None:intergenic | 25.0% |
| ! | CTCTGATAAATAAAAATTGC+AGG | - | chr2_1:77116560-77116579 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | + | chr2_1:77116759-77116778 | Msa0226600:intron | 25.0% |
| !! | TCACTCAAAATCAATTTTTG+TGG | - | chr2_1:77117094-77117113 | None:intergenic | 25.0% |
| ! | AAATGTGAAGTGATTATGTT+TGG | + | chr2_1:77117152-77117171 | Msa0226600:intron | 25.0% |
| ! | TCTAACTTGAAGCTAAAATT+TGG | - | chr2_1:77117246-77117265 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr2_1:77117311-77117330 | None:intergenic | 25.0% |
| !!! | TACACCTTTAGAATCAATTT+TGG | + | chr2_1:77117330-77117349 | Msa0226600:intron | 25.0% |
| !!! | TTTTTTGTATGTAATGGTGT+TGG | + | chr2_1:77117870-77117889 | Msa0226600:intron | 25.0% |
| ! | GAATTCTCAAGTTTATTAGT+TGG | - | chr2_1:77117996-77118015 | None:intergenic | 25.0% |
| ! | ACTAATAAACTTGAGAATTC+TGG | + | chr2_1:77117996-77118015 | Msa0226600:CDS | 25.0% |
| !! | GCAAGTAAATGATAATTTTC+AGG | + | chr2_1:77118244-77118263 | Msa0226600:intron | 25.0% |
| ! | AAACTATACGAGAAACTATT+AGG | + | chr2_1:77118651-77118670 | Msa0226600:intron | 25.0% |
| !! | GTTTATGTAATCTCATGTTT+TGG | + | chr2_1:77118832-77118851 | Msa0226600:intron | 25.0% |
| !!! | ATTTTAAAGGGTTAGTACAT+AGG | + | chr2_1:77118934-77118953 | Msa0226600:intron | 25.0% |
| ! | GATCATTATGATTAAATTGC+AGG | - | chr2_1:77118966-77118985 | None:intergenic | 25.0% |
| ! | TATTCACAGTAAATTTCTGT+AGG | - | chr2_1:77119072-77119091 | None:intergenic | 25.0% |
| ! | ACACGATTGATATTTGAAAA+TGG | - | chr2_1:77119558-77119577 | None:intergenic | 25.0% |
| ! | TTGAATTTCATAGCCATTAA+AGG | - | chr2_1:77119595-77119614 | None:intergenic | 25.0% |
| ! | TTAATGGCTATGAAATTCAA+TGG | + | chr2_1:77119595-77119614 | Msa0226600:intron | 25.0% |
| !! | TATTTTCTTTGCATTTGAAG+TGG | + | chr2_1:77119858-77119877 | Msa0226600:intron | 25.0% |
| !! | ATTTCCACAAGTTTTCATTA+AGG | + | chr2_1:77120058-77120077 | Msa0226600:CDS | 25.0% |
| !! | TTTCCACAAGTTTTCATTAA+GGG | + | chr2_1:77120059-77120078 | Msa0226600:CDS | 25.0% |
| ! | GATGTGAAATATTGTTAAAC+AGG | - | chr2_1:77120178-77120197 | None:intergenic | 25.0% |
| !! | TGTCTTTGTATTAGATTTTC+TGG | + | chr2_1:77120351-77120370 | Msa0226600:three_prime_UTR | 25.0% |
| !! | TGTCTCTTTCTTCTGTTTTT+GGG | - | chr2_1:77116282-77116301 | None:intergenic | 30.0% |
| ! | ATGTCTCTTTCTTCTGTTTT+TGG | - | chr2_1:77116283-77116302 | None:intergenic | 30.0% |
| ! | AAAAGCATGGAACTTTATGA+TGG | - | chr2_1:77116478-77116497 | None:intergenic | 30.0% |
| ACCGTAAAATAGAAAAAGCA+TGG | - | chr2_1:77116491-77116510 | None:intergenic | 30.0% | |
| GAGGAAAATGAAGAAAACAA+AGG | - | chr2_1:77116523-77116542 | None:intergenic | 30.0% | |
| GATAAATAAAAATTGCAGGG+TGG | - | chr2_1:77116556-77116575 | None:intergenic | 30.0% | |
| CAAGATAGCAAAACAATTTC+AGG | - | chr2_1:77116653-77116672 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr2_1:77116744-77116763 | Msa0226600:intron | 30.0% | |
| CTAAAAGCTGTAAATTAACC+CGG | - | chr2_1:77116978-77116997 | None:intergenic | 30.0% | |
| AACTGCTTTGTATAAGCTAT+AGG | + | chr2_1:77117026-77117045 | Msa0226600:intron | 30.0% | |
| !!! | TCCTATGTGTTTTGATTATG+TGG | + | chr2_1:77117068-77117087 | Msa0226600:intron | 30.0% |
| !!! | GTATGTTCGGTTTCATTTTT+TGG | - | chr2_1:77117361-77117380 | None:intergenic | 30.0% |
| ! | TGAGTGGCAATATTTACTTT+TGG | - | chr2_1:77117407-77117426 | None:intergenic | 30.0% |
| !! | TAAGCTATTTCTGTAGCAAA+AGG | + | chr2_1:77117553-77117572 | Msa0226600:intron | 30.0% |
| TCAAATCAGTCAATTCAAAC+AGG | + | chr2_1:77117736-77117755 | Msa0226600:intron | 30.0% | |
| AACTCCAAAAGTCAATCTTA+GGG | - | chr2_1:77117762-77117781 | None:intergenic | 30.0% | |
| AAACTCCAAAAGTCAATCTT+AGG | - | chr2_1:77117763-77117782 | None:intergenic | 30.0% | |
| CTAACTAGTTCCAGTTATTA+TGG | + | chr2_1:77117915-77117934 | Msa0226600:CDS | 30.0% | |
| GTATCTCATTCCATAATAAC+TGG | - | chr2_1:77117928-77117947 | None:intergenic | 30.0% | |
| TGTACATGAGAATTCTATGA+AGG | + | chr2_1:77118070-77118089 | Msa0226600:intron | 30.0% | |
| GTACATGAGAATTCTATGAA+GGG | + | chr2_1:77118071-77118090 | Msa0226600:intron | 30.0% | |
| !!! | TGAAGGGTTTATTGTTTTGA+TGG | + | chr2_1:77118087-77118106 | Msa0226600:intron | 30.0% |
| !! | GTGACTTGTTAATAATGTAC+AGG | + | chr2_1:77118122-77118141 | Msa0226600:intron | 30.0% |
| TAATAATGTACAGGATGTCA+AGG | + | chr2_1:77118131-77118150 | Msa0226600:intron | 30.0% | |
| TCCTGTTATGATTTACATGA+AGG | + | chr2_1:77118158-77118177 | Msa0226600:CDS | 30.0% | |
| CCTGTTATGATTTACATGAA+GGG | + | chr2_1:77118159-77118178 | Msa0226600:CDS | 30.0% | |
| ATATAATTTCTCAGGTAGCA+AGG | - | chr2_1:77118276-77118295 | None:intergenic | 30.0% | |
| TTCAGAGGATATAATTTCTC+AGG | - | chr2_1:77118284-77118303 | None:intergenic | 30.0% | |
| !!! | AATCTGAACTAGTCTTTTCA+TGG | + | chr2_1:77118302-77118321 | Msa0226600:intron | 30.0% |
| !! | AATTTGTTGAATGTAGCTGA+TGG | + | chr2_1:77118436-77118455 | Msa0226600:intron | 30.0% |
| ! | ATTTGTTGAATGTAGCTGAT+GGG | + | chr2_1:77118437-77118456 | Msa0226600:intron | 30.0% |
| !! | TACCATCTTTTCTAGTATAG+GGG | - | chr2_1:77118522-77118541 | None:intergenic | 30.0% |
| !! | CTACCATCTTTTCTAGTATA+GGG | - | chr2_1:77118523-77118542 | None:intergenic | 30.0% |
| !! | TCTACCATCTTTTCTAGTAT+AGG | - | chr2_1:77118524-77118543 | None:intergenic | 30.0% |
| AATAAGGAGAATAGATCAGA+TGG | + | chr2_1:77118589-77118608 | Msa0226600:intron | 30.0% | |
| ! | GTTTCTCGTATAGTTTTTCT+AGG | - | chr2_1:77118647-77118666 | None:intergenic | 30.0% |
| TATACGAGAAACTATTAGGA+AGG | + | chr2_1:77118655-77118674 | Msa0226600:intron | 30.0% | |
| ! | AATGAGTTGGAGAAAAAACA+TGG | + | chr2_1:77118689-77118708 | Msa0226600:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr2_1:77118709-77118728 | Msa0226600:intron | 30.0% |
| TTGAAGAGGATGAAATCAAA+AGG | - | chr2_1:77118894-77118913 | None:intergenic | 30.0% | |
| ! | TTTGATTTCATCCTCTTCAA+CGG | + | chr2_1:77118894-77118913 | Msa0226600:intron | 30.0% |
| TAACCTGCACAAACTTATAT+AGG | + | chr2_1:77118993-77119012 | Msa0226600:intron | 30.0% | |
| !! | TGAATATGACTTAGCTTTAC+TGG | + | chr2_1:77119113-77119132 | Msa0226600:intron | 30.0% |
| AAAATGTTCCTAGCACTTAA+AGG | - | chr2_1:77119202-77119221 | None:intergenic | 30.0% | |
| ! | TTTACAGCATTTTTCACTTC+AGG | - | chr2_1:77119232-77119251 | None:intergenic | 30.0% |
| ATGATCTTCAGATTATTGAC+AGG | - | chr2_1:77119629-77119648 | None:intergenic | 30.0% | |
| ACATATATCAACAACGTACA+AGG | - | chr2_1:77119797-77119816 | None:intergenic | 30.0% | |
| AGCTTAATAATTGACAGATG+AGG | + | chr2_1:77119979-77119998 | Msa0226600:intron | 30.0% | |
| ATGAAAACTTGTGGAAATGT+TGG | - | chr2_1:77120056-77120075 | None:intergenic | 30.0% | |
| TTCATTAAGGGAGAGTTTAT+TGG | + | chr2_1:77120071-77120090 | Msa0226600:CDS | 30.0% | |
| AATTGATCAACTCTTGCAAT+GGG | - | chr2_1:77120135-77120154 | None:intergenic | 30.0% | |
| AAATTGATCAACTCTTGCAA+TGG | - | chr2_1:77120136-77120155 | None:intergenic | 30.0% | |
| ATACATCAGAATTGCTTCCA+TGG | + | chr2_1:77116351-77116370 | Msa0226600:exon | 35.0% | |
| !!! | TTAGGGTTTGATTTTAGGGT+TGG | - | chr2_1:77116433-77116452 | None:intergenic | 35.0% |
| CAAACTAGCTCAGATATTCT+GGG | - | chr2_1:77116700-77116719 | None:intergenic | 35.0% | |
| AGTAAATGGGTCAGATATTC+TGG | + | chr2_1:77116885-77116904 | Msa0226600:intron | 35.0% | |
| GTAAATGGGTCAGATATTCT+GGG | + | chr2_1:77116886-77116905 | Msa0226600:intron | 35.0% | |
| AATTAACCCGGTCATACAAA+CGG | - | chr2_1:77116966-77116985 | None:intergenic | 35.0% | |
| GCCACATAATCAAAACACAT+AGG | - | chr2_1:77117072-77117091 | None:intergenic | 35.0% | |
| GTTAGAATCAATTCTTCCAG+AGG | + | chr2_1:77117260-77117279 | Msa0226600:intron | 35.0% | |
| !! | AGGATAATTGATTTTGCCTC+TGG | - | chr2_1:77117279-77117298 | None:intergenic | 35.0% |
| AGAGGCAAAATCAATTATCC+TGG | + | chr2_1:77117278-77117297 | Msa0226600:intron | 35.0% | |
| GCAAAATCAATTATCCTGGA+GGG | + | chr2_1:77117282-77117301 | Msa0226600:intron | 35.0% | |
| ! | GGAGCCAAAATTGATTCTAA+AGG | - | chr2_1:77117337-77117356 | None:intergenic | 35.0% |
| !!! | TGTTCGGTTTCATTTTTTGG+AGG | - | chr2_1:77117358-77117377 | None:intergenic | 35.0% |
| !! | GTGGCAATATTTACTTTTGG+AGG | - | chr2_1:77117404-77117423 | None:intergenic | 35.0% |
| GAAAAAGGGCTAAAATTGAG+TGG | - | chr2_1:77117423-77117442 | None:intergenic | 35.0% | |
| TTATTTGCAGCTTATAGCAC+AGG | + | chr2_1:77117504-77117523 | Msa0226600:intron | 35.0% | |
| TGTGGAAATAAGCTGAAAAC+AGG | + | chr2_1:77117641-77117660 | Msa0226600:intron | 35.0% | |
| TGGAATGAGATACACAACTA+AGG | + | chr2_1:77117935-77117954 | Msa0226600:CDS | 35.0% | |
| ! | TTTGTCAAGTATTGTTGAGC+AGG | + | chr2_1:77118025-77118044 | Msa0226600:CDS | 35.0% |
| CCCTTCATGTAAATCATAAC+AGG | - | chr2_1:77118162-77118181 | None:intergenic | 35.0% | |
| ! | AAAGACTAGTTCAGATTCAG+AGG | - | chr2_1:77118299-77118318 | None:intergenic | 35.0% |
| !! | TGATGGGTTTATTGACTAGA+CGG | + | chr2_1:77118453-77118472 | Msa0226600:intron | 35.0% |
| ACGACATTAGATAGAGAGTT+GGG | + | chr2_1:77118492-77118511 | Msa0226600:intron | 35.0% | |
| AACCCCTATACTAGAAAAGA+TGG | + | chr2_1:77118517-77118536 | Msa0226600:intron | 35.0% | |
| AGATGGTAGAAACTAGACAT+AGG | + | chr2_1:77118534-77118553 | Msa0226600:intron | 35.0% | |
| AAACTAGACATAGGTGGTTT+CGG | + | chr2_1:77118543-77118562 | Msa0226600:intron | 35.0% | |
| AGCTTGTGGATTCTGTAATA+AGG | + | chr2_1:77118573-77118592 | Msa0226600:intron | 35.0% | |
| GGATCTAGAGATAAATGAGT+TGG | + | chr2_1:77118676-77118695 | Msa0226600:intron | 35.0% | |
| AGGATGAAATCAAAAGGCAA+GGG | - | chr2_1:77118888-77118907 | None:intergenic | 35.0% | |
| CATCCTATATAAGTTTGTGC+AGG | - | chr2_1:77118999-77119018 | None:intergenic | 35.0% | |
| GCACAAACTTATATAGGATG+CGG | + | chr2_1:77118999-77119018 | Msa0226600:intron | 35.0% | |
| ! | TAGCTTTACTGGATGATGAA+TGG | + | chr2_1:77119124-77119143 | Msa0226600:intron | 35.0% |
| AAAATGCTGTAAAAGCCTAC+AGG | + | chr2_1:77119239-77119258 | Msa0226600:CDS | 35.0% | |
| GATTTCAACTTATCTAGTCG+TGG | + | chr2_1:77119743-77119762 | Msa0226600:intron | 35.0% | |
| TTGATATATGTACATGCGTC+TGG | + | chr2_1:77119806-77119825 | Msa0226600:intron | 35.0% | |
| ! | TCTTTGCATTTGAAGTGGTA+TGG | + | chr2_1:77119863-77119882 | Msa0226600:intron | 35.0% |
| TCTCCCTTAATGAAAACTTG+TGG | - | chr2_1:77120065-77120084 | None:intergenic | 35.0% | |
| ATTAAGGGAGAGTTTATTGG+TGG | + | chr2_1:77120074-77120093 | Msa0226600:CDS | 35.0% | |
| TATTGTTCTTAGTATGCACC+AGG | + | chr2_1:77120103-77120122 | Msa0226600:CDS | 35.0% | |
| TATTTCACATCCTTGTAGAG+TGG | + | chr2_1:77120187-77120206 | Msa0226600:intron | 35.0% | |
| ! | TTAGTTGTGCTTTTACTGCT+TGG | - | chr2_1:77120245-77120264 | None:intergenic | 35.0% |
| ! | AAGCAGTAAAAGCACAACTA+AGG | + | chr2_1:77120244-77120263 | Msa0226600:exon | 35.0% |
| ! | TAAAAGCACAACTAAGGTGA+TGG | + | chr2_1:77120250-77120269 | Msa0226600:exon | 35.0% |
| ! | AAAAGCACAACTAAGGTGAT+GGG | + | chr2_1:77120251-77120270 | Msa0226600:exon | 35.0% |
| TGATGGGATTTAAAAGAGAG+AGG | + | chr2_1:77120267-77120286 | Msa0226600:three_prime_UTR | 35.0% | |
| ! | ATGGCGACCATTCTTTTCAA+GGG | + | chr2_1:77116370-77116389 | Msa0226600:CDS | 40.0% |
| AGCGATTCCCTTGAAAAGAA+TGG | - | chr2_1:77116380-77116399 | None:intergenic | 40.0% | |
| CCAAACTAGCTCAGATATTC+TGG | - | chr2_1:77116701-77116720 | None:intergenic | 40.0% | |
| CCAGAATATCTGAGCTAGTT+TGG | + | chr2_1:77116698-77116717 | Msa0226600:intron | 40.0% | |
| ATTAACCCGGTCATACAAAC+GGG | - | chr2_1:77116965-77116984 | None:intergenic | 40.0% | |
| GGCAAAATCAATTATCCTGG+AGG | + | chr2_1:77117281-77117300 | Msa0226600:intron | 40.0% | |
| TGTGAGTGGCAATGTATGTT+CGG | - | chr2_1:77117374-77117393 | None:intergenic | 40.0% | |
| CATACATTGCCACTCACATT+TGG | + | chr2_1:77117376-77117395 | Msa0226600:intron | 40.0% | |
| GTCTCATTCATGTTCTGCTA+AGG | + | chr2_1:77117461-77117480 | Msa0226600:intron | 40.0% | |
| TTCATGTTCTGCTAAGGCAA+TGG | + | chr2_1:77117467-77117486 | Msa0226600:intron | 40.0% | |
| GCTGTCTTCATAAGTTATCC+TGG | + | chr2_1:77117612-77117631 | Msa0226600:intron | 40.0% | |
| AAGTTATCCTGGAGATCTTG+TGG | + | chr2_1:77117623-77117642 | Msa0226600:intron | 40.0% | |
| CTTATTTCCACAAGATCTCC+AGG | - | chr2_1:77117633-77117652 | None:intergenic | 40.0% | |
| TAATCACTTGAGACTGTCTG+CGG | - | chr2_1:77117701-77117720 | None:intergenic | 40.0% | |
| ! | TTTGAAGTCATCGTGTGTGT+CGG | - | chr2_1:77117973-77117992 | None:intergenic | 40.0% |
| GAGAACTAAATCCACACTGT+GGG | - | chr2_1:77118197-77118216 | None:intergenic | 40.0% | |
| AGAGAACTAAATCCACACTG+TGG | - | chr2_1:77118198-77118217 | None:intergenic | 40.0% | |
| ! | TTGAAAGTGTAGACTCAGAG+TGG | + | chr2_1:77118365-77118384 | Msa0226600:intron | 40.0% |
| ! | GATGGGTTTATTGACTAGAC+GGG | + | chr2_1:77118454-77118473 | Msa0226600:intron | 40.0% |
| ! | ATGGGTTTATTGACTAGACG+GGG | + | chr2_1:77118455-77118474 | Msa0226600:intron | 40.0% |
| GACGACATTAGATAGAGAGT+TGG | + | chr2_1:77118491-77118510 | Msa0226600:intron | 40.0% | |
| CGACATTAGATAGAGAGTTG+GGG | + | chr2_1:77118493-77118512 | Msa0226600:intron | 40.0% | |
| TGGTAGAAACTAGACATAGG+TGG | + | chr2_1:77118537-77118556 | Msa0226600:intron | 40.0% | |
| AAGGAGAATAGATCAGATGG+AGG | + | chr2_1:77118592-77118611 | Msa0226600:intron | 40.0% | |
| AGGAGAATAGATCAGATGGA+GGG | + | chr2_1:77118593-77118612 | Msa0226600:intron | 40.0% | |
| TGTTGTTGTAGCTGATGTCA+TGG | + | chr2_1:77118799-77118818 | Msa0226600:intron | 40.0% | |
| GAGGATGAAATCAAAAGGCA+AGG | - | chr2_1:77118889-77118908 | None:intergenic | 40.0% | |
| TTCATCCTCTTCAACGGAAA+AGG | + | chr2_1:77118900-77118919 | Msa0226600:intron | 40.0% | |
| ! | AGTTTCCTTTTCCGTTGAAG+AGG | - | chr2_1:77118908-77118927 | None:intergenic | 40.0% |
| CAGATGTTCCTTTAAGTGCT+AGG | + | chr2_1:77119191-77119210 | Msa0226600:intron | 40.0% | |
| ! | AAGTGCTAGGAACATTTTGC+AGG | + | chr2_1:77119204-77119223 | Msa0226600:CDS | 40.0% |
| GCATGAACAAACTTACCTGT+AGG | - | chr2_1:77119257-77119276 | None:intergenic | 40.0% | |
| ! | ACAGGTAAGTTTGTTCATGC+TGG | + | chr2_1:77119257-77119276 | Msa0226600:intron | 40.0% |
| ! | ACATATTAGTACCGGAATGC+TGG | + | chr2_1:77119922-77119941 | Msa0226600:intron | 40.0% |
| TGACTGCAGAGAAAGAACAT+GGG | - | chr2_1:77120029-77120048 | None:intergenic | 40.0% | |
| ACAGATTGCATCGAACAAGT+CGG | - | chr2_1:77120302-77120321 | None:intergenic | 40.0% | |
| ! | TCAGTCTTGACTGTCATTTC+AGG | - | chr2_1:77120471-77120490 | None:intergenic | 40.0% |
| ACGCAGACAACTTCGAACTA+AGG | - | chr2_1:77116311-77116330 | None:intergenic | 45.0% | |
| CTTGAAAAGAATGGTCGCCA+TGG | - | chr2_1:77116371-77116390 | None:intergenic | 45.0% | |
| ! | CATGGCGACCATTCTTTTCA+AGG | + | chr2_1:77116369-77116388 | Msa0226600:exon | 45.0% |
| GGTTGGAAAACTTACACGTG+TGG | - | chr2_1:77116416-77116435 | None:intergenic | 45.0% | |
| GCAGGGTGGGAAATTATAAG+AGG | - | chr2_1:77116542-77116561 | None:intergenic | 45.0% | |
| ! | CTAGCTCAGATATTCTGGGA+CGG | - | chr2_1:77116696-77116715 | None:intergenic | 45.0% |
| ! | ATGGGTCAGATATTCTGGGA+CGG | + | chr2_1:77116890-77116909 | Msa0226600:intron | 45.0% |
| TTAACCCGGTCATACAAACG+GGG | - | chr2_1:77116964-77116983 | None:intergenic | 45.0% | |
| TTGGAGGAACCAAATGTGAG+TGG | - | chr2_1:77117388-77117407 | None:intergenic | 45.0% | |
| TGTTCTGCTAAGGCAATGGT+TGG | + | chr2_1:77117471-77117490 | Msa0226600:intron | 45.0% | |
| AATCACTTGAGACTGTCTGC+GGG | - | chr2_1:77117700-77117719 | None:intergenic | 45.0% | |
| !! | CAGGCCCTAAGATTGACTTT+TGG | + | chr2_1:77117755-77117774 | Msa0226600:intron | 45.0% |
| AATCCACACTGTGGGAAATC+AGG | - | chr2_1:77118189-77118208 | None:intergenic | 45.0% | |
| AAAGTGTAGACTCAGAGTGG+AGG | + | chr2_1:77118368-77118387 | Msa0226600:intron | 45.0% | |
| GGAGAATAGATCAGATGGAG+GGG | + | chr2_1:77118594-77118613 | Msa0226600:intron | 45.0% | |
| GAGTTGGATCACTAGAGGTA+GGG | + | chr2_1:77118616-77118635 | Msa0226600:intron | 45.0% | |
| AGTTGGATCACTAGAGGTAG+GGG | + | chr2_1:77118617-77118636 | Msa0226600:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr2_1:77118758-77118777 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr2_1:77118759-77118778 | None:intergenic | 45.0% |
| ! | AAGGGTTAGTACATAGGTGC+TGG | + | chr2_1:77118940-77118959 | Msa0226600:intron | 45.0% |
| ATTTGGCAACACCAGCATTC+CGG | - | chr2_1:77119936-77119955 | None:intergenic | 45.0% | |
| GTGACTGCAGAGAAAGAACA+TGG | - | chr2_1:77120030-77120049 | None:intergenic | 45.0% | |
| TGTTCTTTCTCTGCAGTCAC+TGG | + | chr2_1:77120030-77120049 | Msa0226600:intron | 45.0% | |
| TCTTGCAATGGGAACTAACC+TGG | - | chr2_1:77120124-77120143 | None:intergenic | 45.0% | |
| CTTCAACTCACCACTCTACA+AGG | - | chr2_1:77120200-77120219 | None:intergenic | 45.0% | |
| ! | CTTGTAGAGTGGTGAGTTGA+AGG | + | chr2_1:77120198-77120217 | Msa0226600:intron | 45.0% |
| !! | CTCAGATATTCTGGGACGGA+GGG | - | chr2_1:77116692-77116711 | None:intergenic | 50.0% |
| !! | GTCAGATATTCTGGGACGGA+GGG | + | chr2_1:77116894-77116913 | Msa0226600:intron | 50.0% |
| TAAGGCCCCGTTTGTATGAC+CGG | + | chr2_1:77116956-77116975 | Msa0226600:intron | 50.0% | |
| GACATGTTTGGTTACCCTCC+AGG | - | chr2_1:77117299-77117318 | None:intergenic | 50.0% | |
| GTACCTGATTTCCCACAGTG+TGG | + | chr2_1:77118183-77118202 | Msa0226600:CDS | 50.0% | |
| GTTTCGGCATGTAGAGCTTG+TGG | + | chr2_1:77118559-77118578 | Msa0226600:intron | 50.0% | |
| TAGATCAGATGGAGGGGAGT+TGG | + | chr2_1:77118600-77118619 | Msa0226600:intron | 50.0% | |
| GGAGTTGGATCACTAGAGGT+AGG | + | chr2_1:77118615-77118634 | Msa0226600:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2_1:77118754-77118773 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr2_1:77118760-77118779 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr2_1:77118757-77118776 | Msa0226600:intron | 50.0% | |
| ! | GGTATGGTTGTGTCACTGTG+TGG | + | chr2_1:77119879-77119898 | Msa0226600:intron | 50.0% |
| !! | GCTCAGATATTCTGGGACGG+AGG | - | chr2_1:77116693-77116712 | None:intergenic | 55.0% |
| !! | GGTCAGATATTCTGGGACGG+AGG | + | chr2_1:77116893-77116912 | Msa0226600:intron | 55.0% |
| AAGGCCCCGTTTGTATGACC+GGG | + | chr2_1:77116957-77116976 | Msa0226600:intron | 55.0% | |
| GAGGGGAGTTGGATCACTAG+AGG | + | chr2_1:77118611-77118630 | Msa0226600:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr2_1:77118745-77118764 | Msa0226600:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr2_1:77118746-77118765 | Msa0226600:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2_1:77118752-77118771 | Msa0226600:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 77116278 | 77120531 | 77116278 | ID=Msa0226600;Name=Msa0226600 |
| chr2_1 | mRNA | 77116278 | 77120531 | 77116278 | ID=Msa0226600-mRNA-1;Parent=Msa0226600;Name=Msa0226600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=92|0.8|0.83|1|1|1|6|279|147 |
| chr2_1 | exon | 77116278 | 77116420 | 77116278 | ID=Msa0226600-mRNA-1:exon:23370;Parent=Msa0226600-mRNA-1 |
| chr2_1 | exon | 77117915 | 77118046 | 77117915 | ID=Msa0226600-mRNA-1:exon:23371;Parent=Msa0226600-mRNA-1 |
| chr2_1 | exon | 77118144 | 77118210 | 77118144 | ID=Msa0226600-mRNA-1:exon:23372;Parent=Msa0226600-mRNA-1 |
| chr2_1 | exon | 77119194 | 77119260 | 77119194 | ID=Msa0226600-mRNA-1:exon:23373;Parent=Msa0226600-mRNA-1 |
| chr2_1 | exon | 77120046 | 77120124 | 77120046 | ID=Msa0226600-mRNA-1:exon:23374;Parent=Msa0226600-mRNA-1 |
| chr2_1 | exon | 77120205 | 77120531 | 77120205 | ID=Msa0226600-mRNA-1:exon:23375;Parent=Msa0226600-mRNA-1 |
| chr2_1 | five_prime_UTR | 77116278 | 77116369 | 77116278 | ID=Msa0226600-mRNA-1:five_prime_utr;Parent=Msa0226600-mRNA-1 |
| chr2_1 | CDS | 77116370 | 77116420 | 77116370 | ID=Msa0226600-mRNA-1:cds;Parent=Msa0226600-mRNA-1 |
| chr2_1 | CDS | 77117915 | 77118046 | 77117915 | ID=Msa0226600-mRNA-1:cds;Parent=Msa0226600-mRNA-1 |
| chr2_1 | CDS | 77118144 | 77118210 | 77118144 | ID=Msa0226600-mRNA-1:cds;Parent=Msa0226600-mRNA-1 |
| chr2_1 | CDS | 77119194 | 77119260 | 77119194 | ID=Msa0226600-mRNA-1:cds;Parent=Msa0226600-mRNA-1 |
| chr2_1 | CDS | 77120046 | 77120124 | 77120046 | ID=Msa0226600-mRNA-1:cds;Parent=Msa0226600-mRNA-1 |
| chr2_1 | CDS | 77120205 | 77120252 | 77120205 | ID=Msa0226600-mRNA-1:cds;Parent=Msa0226600-mRNA-1 |
| chr2_1 | three_prime_UTR | 77120253 | 77120531 | 77120253 | ID=Msa0226600-mRNA-1:three_prime_utr;Parent=Msa0226600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
