AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687020 MtrunA17_Chr4g0037241 100.000 153 0 0 1 153 1 153 5.22e-108 304
Msa0687020 MtrunA17_Chr5g0444101 100.000 153 0 0 1 153 1 153 5.22e-108 304
Msa0687020 MtrunA17_Chr6g0475961 80.263 152 30 0 1 152 4 155 2.18e-84 246
Msa0687020 MtrunA17_Chr6g0475961 84.956 113 17 0 1 113 80 192 3.97e-64 194
Msa0687020 MtrunA17_Chr7g0274921 80.263 152 30 0 1 152 3 154 1.01e-83 245
Msa0687020 MtrunA17_Chr7g0274921 80.263 152 30 0 1 152 79 230 1.01e-83 245
Msa0687020 MtrunA17_Chr1g0181441 80.263 152 30 0 1 152 1 152 2.17e-83 244
Msa0687020 MtrunA17_Chr1g0181441 80.263 152 30 0 1 152 77 228 2.17e-83 244
Msa0687020 MtrunA17_Chr4g0041751 79.605 152 31 0 1 152 1 152 7.98e-83 243
Msa0687020 MtrunA17_Chr4g0041751 75.000 152 38 0 1 152 77 228 7.39e-74 220
Msa0687020 MtrunA17_Chr8g0377821 80.392 153 30 0 1 153 237 389 1.27e-82 248
Msa0687020 MtrunA17_Chr8g0377821 80.263 152 30 0 1 152 9 160 1.25e-81 245
Msa0687020 MtrunA17_Chr8g0377821 80.263 152 30 0 1 152 85 236 1.25e-81 245
Msa0687020 MtrunA17_Chr8g0377821 80.263 152 30 0 1 152 161 312 1.25e-81 245
Msa0687020 MtrunA17_Chr4g0046801 80.263 152 30 0 1 152 4 155 9.89e-81 245
Msa0687020 MtrunA17_Chr4g0046801 80.263 152 30 0 1 152 80 231 9.89e-81 245
Msa0687020 MtrunA17_Chr4g0046801 80.263 152 30 0 1 152 156 307 9.89e-81 245
Msa0687020 MtrunA17_Chr4g0046801 80.263 152 30 0 1 152 232 383 9.89e-81 245
Msa0687020 MtrunA17_Chr4g0046801 80.263 152 30 0 1 152 308 459 9.89e-81 245
Msa0687020 MtrunA17_Chr4g0041641 80.263 152 30 0 1 152 5 156 1.27e-80 245
Msa0687020 MtrunA17_Chr4g0041641 80.263 152 30 0 1 152 81 232 1.27e-80 245
Msa0687020 MtrunA17_Chr4g0041641 80.263 152 30 0 1 152 157 308 1.27e-80 245
Msa0687020 MtrunA17_Chr4g0041641 80.263 152 30 0 1 152 233 384 1.27e-80 245
Msa0687020 MtrunA17_Chr4g0041641 80.263 152 30 0 1 152 309 460 1.27e-80 245
Msa0687020 MtrunA17_Chr8g0342711 80.263 152 30 0 1 152 4 155 7.00e-80 245
Msa0687020 MtrunA17_Chr8g0342711 80.263 152 30 0 1 152 80 231 7.00e-80 245
Msa0687020 MtrunA17_Chr8g0342711 80.263 152 30 0 1 152 156 307 7.00e-80 245
Msa0687020 MtrunA17_Chr8g0342711 80.263 152 30 0 1 152 232 383 7.00e-80 245
Msa0687020 MtrunA17_Chr8g0342711 80.263 152 30 0 1 152 308 459 7.00e-80 245
Msa0687020 MtrunA17_Chr8g0342711 80.263 152 30 0 1 152 384 535 7.00e-80 245
Msa0687020 MtrunA17_Chr4g0041701 80.263 152 30 0 1 152 1 152 7.10e-80 245
Msa0687020 MtrunA17_Chr4g0041701 80.263 152 30 0 1 152 77 228 7.10e-80 245
Msa0687020 MtrunA17_Chr4g0041701 80.263 152 30 0 1 152 153 304 7.10e-80 245
Msa0687020 MtrunA17_Chr4g0041701 80.263 152 30 0 1 152 229 380 7.10e-80 245
Msa0687020 MtrunA17_Chr4g0041701 80.263 152 30 0 1 152 305 456 7.10e-80 245
Msa0687020 MtrunA17_Chr4g0041701 80.263 152 30 0 1 152 381 532 7.10e-80 245
Msa0687020 MtrunA17_Chr4g0048591 80.263 152 30 0 1 152 4 155 7.31e-80 245
Msa0687020 MtrunA17_Chr4g0048591 80.263 152 30 0 1 152 80 231 7.31e-80 245
Msa0687020 MtrunA17_Chr4g0048591 80.263 152 30 0 1 152 156 307 7.31e-80 245
Msa0687020 MtrunA17_Chr4g0048591 80.263 152 30 0 1 152 384 535 7.31e-80 245
Msa0687020 MtrunA17_Chr4g0048591 80.263 152 30 0 1 152 232 383 3.08e-79 243
Msa0687020 MtrunA17_Chr4g0048591 78.947 152 32 0 1 152 308 459 3.04e-78 241
Msa0687020 MtrunA17_Chr4g0046831 80.263 152 30 0 1 152 80 231 2.41e-79 245
Msa0687020 MtrunA17_Chr4g0046831 80.263 152 30 0 1 152 156 307 2.41e-79 245
Msa0687020 MtrunA17_Chr4g0046831 80.263 152 30 0 1 152 368 519 2.41e-79 245
Msa0687020 MtrunA17_Chr4g0046831 80.263 152 30 0 1 152 444 595 2.41e-79 245
Msa0687020 MtrunA17_Chr4g0046831 79.605 152 31 0 1 152 4 155 4.50e-78 242
Msa0687020 MtrunA17_Chr4g0046831 74.342 152 23 1 1 152 232 367 3.77e-67 214
Msa0687020 MtrunA17_Chr4g0046831 69.737 152 30 1 1 152 308 443 6.09e-63 202
Msa0687020 MtrunA17_Chr7g0266661 100.000 76 0 0 1 76 1 76 8.84e-50 155
Msa0687020 MtrunA17_Chr7g0266661 62.162 74 28 0 79 152 3 76 1.73e-26 96.7
Msa0687020 MtrunA17_Chr1g0178381 100.000 76 0 0 1 76 1 76 8.84e-50 155
Msa0687020 MtrunA17_Chr1g0178381 62.162 74 28 0 79 152 3 76 1.73e-26 96.7
Msa0687020 MtrunA17_Chr3g0127481 100.000 76 0 0 1 76 1 76 8.84e-50 155
Msa0687020 MtrunA17_Chr3g0127481 62.162 74 28 0 79 152 3 76 1.73e-26 96.7
Msa0687020 MtrunA17_Chr6g0475951 100.000 76 0 0 1 76 1 76 1.16e-49 154
Msa0687020 MtrunA17_Chr6g0475951 62.162 74 28 0 79 152 3 76 4.69e-27 96.7
Msa0687020 MtrunA17_Chr8g0380181 98.701 77 1 0 1 77 1 77 2.60e-49 155
Msa0687020 MtrunA17_Chr8g0380181 62.162 74 28 0 79 152 3 76 3.11e-26 97.1
Msa0687020 MtrunA17_Chr5g0413361 98.701 77 1 0 1 77 1 77 2.94e-49 155
Msa0687020 MtrunA17_Chr5g0413361 62.162 74 28 0 79 152 3 76 3.04e-26 97.1
Msa0687020 MtrunA17_Chr8g0374171 88.172 93 11 0 1 93 74 166 1.71e-44 144
Msa0687020 MtrunA17_Chr8g0374171 69.091 110 34 0 43 152 40 149 4.76e-43 140
Msa0687020 MtrunA17_Chr1g0169371 71.053 76 22 0 1 76 215 290 5.02e-29 107
Msa0687020 MtrunA17_Chr1g0169371 44.595 74 41 0 79 152 217 290 5.68e-14 67.4
Msa0687020 MtrunA17_Chr5g0433721 68.831 77 23 1 1 76 194 270 9.63e-28 103
Msa0687020 MtrunA17_Chr5g0433721 48.000 75 38 1 79 152 196 270 1.17e-14 68.9
Msa0687020 MtrunA17_Chr5g0433631 69.863 73 22 0 1 73 266 338 1.11e-27 105
Msa0687020 MtrunA17_Chr5g0433631 49.275 69 35 0 79 147 268 336 1.24e-13 67.0
Msa0687020 MtrunA17_Chr5g0424981 60.000 75 30 0 1 75 2 76 2.16e-25 92.4
Msa0687020 MtrunA17_Chr5g0424981 41.892 74 43 0 78 151 3 76 6.58e-14 63.2
Msa0687020 MtrunA17_Chr5g0428191 68.421 76 24 0 1 76 241 316 4.69e-25 97.8
Msa0687020 MtrunA17_Chr5g0428191 47.297 74 39 0 79 152 243 316 8.03e-13 64.3
Msa0687020 MtrunA17_Chr8g0374161 100.000 44 0 0 1 44 9 52 1.83e-24 89.4
Msa0687020 MtrunA17_Chr8g0374161 61.905 42 16 0 79 120 11 52 1.22e-11 56.6
Msa0687020 MtrunA17_Chr5g0433411 64.384 73 26 0 1 73 267 339 1.28e-23 94.4
Msa0687020 MtrunA17_Chr5g0433411 43.077 65 37 0 85 149 275 339 8.32e-11 58.9
Msa0687020 MtrunA17_Chr5g0433681 59.211 76 30 1 1 75 1 76 7.30e-23 86.3
Msa0687020 MtrunA17_Chr5g0433681 39.394 66 40 0 86 151 11 76 4.59e-11 55.8
Msa0687020 MtrunA17_Chr2g0298951 61.333 75 29 0 1 75 236 310 8.24e-23 91.7
Msa0687020 MtrunA17_Chr5g0433661 65.333 75 26 0 1 75 278 352 1.47e-22 91.7
Msa0687020 MtrunA17_Chr5g0433521 61.333 75 29 0 1 75 240 314 1.57e-22 90.9
Msa0687020 MtrunA17_Chr2g0298941 60.000 75 30 0 1 75 177 251 2.58e-22 89.4
Msa0687020 MtrunA17_Chr7g0259431 58.667 75 31 0 1 75 223 297 9.92e-22 88.6
Msa0687020 MtrunA17_Chr7g0259431 43.243 74 42 0 78 151 224 297 5.00e-12 62.0
Msa0687020 MtrunA17_Chr1g0169401 60.000 70 28 0 7 76 2 71 1.98e-21 82.0
Msa0687020 MtrunA17_Chr1g0169401 41.429 70 41 0 83 152 2 71 2.12e-12 58.9
Msa0687020 MtrunA17_Chr4g0003111 53.333 75 35 0 1 75 4 78 2.90e-20 79.3
Msa0687020 MtrunA17_Chr5g0433531 57.333 75 31 1 1 74 244 318 1.40e-19 83.2
Msa0687020 MtrunA17_Chr5g0433701 58.824 68 27 1 1 67 1 68 1.07e-18 75.9
Msa0687020 MtrunA17_Chr7g0223111 60.526 76 29 1 1 75 267 342 1.53e-18 80.5
Msa0687020 MtrunA17_Chr5g0424971 53.333 75 35 0 1 75 252 326 7.47e-18 78.6
Msa0687020 MtrunA17_Chr4g0041621 72.917 48 13 0 44 91 11 58 2.78e-16 68.9
Msa0687020 MtrunA17_Chr3g0126781 31.250 144 96 3 7 147 32 175 3.81e-16 74.3
Msa0687020 MtrunA17_Chr5g0433391 48.684 76 38 1 1 75 8 83 1.24e-15 67.8
Msa0687020 MtrunA17_Chr5g0433711 56.452 62 27 0 13 74 2 63 4.52e-15 65.9
Msa0687020 MtrunA17_Chr5g0433381 50.649 77 36 2 1 75 9 85 6.70e-15 65.9
Msa0687020 MtrunA17_Chr7g0275661 34.074 135 83 4 1 130 37 170 7.18e-15 70.9
Msa0687020 MtrunA17_Chr8g0346901 34.437 151 87 6 3 145 38 184 7.26e-15 70.9
Msa0687020 MtrunA17_Chr8g0388301 30.882 136 91 3 15 147 40 175 4.75e-13 65.5
Msa0687020 MtrunA17_Chr1g0212981 63.415 41 15 0 45 85 17 57 4.17e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687020 AT1G31340.1 99.342 152 1 0 1 152 1 152 4.15e-106 300
Msa0687020 AT2G35635.1 98.684 152 2 0 1 152 1 152 4.15e-105 297
Msa0687020 AT2G35635.1 60.526 76 30 0 3 78 79 154 4.26e-25 94.4
Msa0687020 AT4G05320.7 80.263 152 30 0 1 152 1 152 1.51e-84 245
Msa0687020 AT4G05050.4 80.263 152 30 0 1 152 1 152 1.51e-84 245
Msa0687020 AT4G02890.2 80.263 152 30 0 1 152 1 152 1.54e-83 245
Msa0687020 AT4G02890.2 80.263 152 30 0 1 152 77 228 1.54e-83 245
Msa0687020 AT4G02890.1 80.263 152 30 0 1 152 1 152 1.54e-83 245
Msa0687020 AT4G02890.1 80.263 152 30 0 1 152 77 228 1.54e-83 245
Msa0687020 AT4G05050.2 80.263 152 30 0 1 152 1 152 1.54e-83 245
Msa0687020 AT4G05050.2 80.263 152 30 0 1 152 77 228 1.54e-83 245
Msa0687020 AT4G05050.1 80.263 152 30 0 1 152 1 152 1.54e-83 245
Msa0687020 AT4G05050.1 80.263 152 30 0 1 152 77 228 1.54e-83 245
Msa0687020 AT4G05050.3 80.263 152 30 0 1 152 1 152 1.54e-83 245
Msa0687020 AT4G05050.3 80.263 152 30 0 1 152 77 228 1.54e-83 245
Msa0687020 AT5G03240.3 79.739 153 31 0 1 153 153 305 1.13e-82 246
Msa0687020 AT5G03240.3 80.263 152 30 0 1 152 1 152 1.66e-82 245
Msa0687020 AT5G03240.3 80.263 152 30 0 1 152 77 228 1.66e-82 245
Msa0687020 AT5G03240.2 79.739 153 31 0 1 153 153 305 1.13e-82 246
Msa0687020 AT5G03240.2 80.263 152 30 0 1 152 1 152 1.66e-82 245
Msa0687020 AT5G03240.2 80.263 152 30 0 1 152 77 228 1.66e-82 245
Msa0687020 AT5G03240.1 79.739 153 31 0 1 153 153 305 1.13e-82 246
Msa0687020 AT5G03240.1 80.263 152 30 0 1 152 1 152 1.66e-82 245
Msa0687020 AT5G03240.1 80.263 152 30 0 1 152 77 228 1.66e-82 245
Msa0687020 AT5G20620.2 79.739 153 31 0 1 153 153 305 1.13e-82 246
Msa0687020 AT5G20620.2 80.263 152 30 0 1 152 1 152 1.66e-82 245
Msa0687020 AT5G20620.2 80.263 152 30 0 1 152 77 228 1.66e-82 245
Msa0687020 AT4G05320.5 80.263 152 30 0 1 152 1 152 1.65e-82 245
Msa0687020 AT4G05320.5 80.263 152 30 0 1 152 77 228 1.65e-82 245
Msa0687020 AT4G05320.5 80.263 152 30 0 1 152 153 304 1.65e-82 245
Msa0687020 AT4G05320.8 80.263 152 30 0 1 152 1 152 1.65e-82 245
Msa0687020 AT4G05320.8 80.263 152 30 0 1 152 77 228 1.65e-82 245
Msa0687020 AT4G05320.8 80.263 152 30 0 1 152 153 304 1.65e-82 245
Msa0687020 AT4G02890.3 80.263 152 30 0 1 152 1 152 1.65e-82 245
Msa0687020 AT4G02890.3 80.263 152 30 0 1 152 77 228 1.65e-82 245
Msa0687020 AT4G02890.3 80.263 152 30 0 1 152 153 304 1.65e-82 245
Msa0687020 AT4G02890.4 80.263 152 30 0 1 152 1 152 1.65e-82 245
Msa0687020 AT4G02890.4 80.263 152 30 0 1 152 77 228 1.65e-82 245
Msa0687020 AT4G02890.4 80.263 152 30 0 1 152 153 304 1.65e-82 245
Msa0687020 AT5G20620.1 79.739 153 31 0 1 153 229 381 1.23e-81 246
Msa0687020 AT5G20620.1 80.263 152 30 0 1 152 1 152 1.79e-81 245
Msa0687020 AT5G20620.1 80.263 152 30 0 1 152 77 228 1.79e-81 245
Msa0687020 AT5G20620.1 80.263 152 30 0 1 152 153 304 1.79e-81 245
Msa0687020 AT4G05320.1 80.263 152 30 0 1 152 1 152 1.80e-81 245
Msa0687020 AT4G05320.1 80.263 152 30 0 1 152 77 228 1.80e-81 245
Msa0687020 AT4G05320.1 80.263 152 30 0 1 152 153 304 1.80e-81 245
Msa0687020 AT4G05320.1 80.263 152 30 0 1 152 229 380 1.80e-81 245
Msa0687020 AT4G05320.6 80.263 152 30 0 1 152 1 152 1.80e-81 245
Msa0687020 AT4G05320.6 80.263 152 30 0 1 152 77 228 1.80e-81 245
Msa0687020 AT4G05320.6 80.263 152 30 0 1 152 153 304 1.80e-81 245
Msa0687020 AT4G05320.6 80.263 152 30 0 1 152 229 380 1.80e-81 245
Msa0687020 AT4G05320.3 80.263 152 30 0 1 152 1 152 1.80e-81 245
Msa0687020 AT4G05320.3 80.263 152 30 0 1 152 77 228 1.80e-81 245
Msa0687020 AT4G05320.3 80.263 152 30 0 1 152 153 304 1.80e-81 245
Msa0687020 AT4G05320.3 80.263 152 30 0 1 152 229 380 1.80e-81 245
Msa0687020 AT1G55060.1 77.778 153 34 0 1 153 77 229 4.90e-81 239
Msa0687020 AT1G55060.1 73.684 152 40 0 1 152 1 152 4.90e-77 229
Msa0687020 AT4G05320.2 80.263 152 30 0 1 152 1 152 1.29e-80 245
Msa0687020 AT4G05320.2 80.263 152 30 0 1 152 77 228 1.29e-80 245
Msa0687020 AT4G05320.2 80.263 152 30 0 1 152 153 304 1.29e-80 245
Msa0687020 AT4G05320.2 80.263 152 30 0 1 152 229 380 1.29e-80 245
Msa0687020 AT4G05320.2 80.263 152 30 0 1 152 305 456 1.29e-80 245
Msa0687020 AT4G05320.4 80.263 152 30 0 1 152 1 152 1.29e-80 245
Msa0687020 AT4G05320.4 80.263 152 30 0 1 152 77 228 1.29e-80 245
Msa0687020 AT4G05320.4 80.263 152 30 0 1 152 153 304 1.29e-80 245
Msa0687020 AT4G05320.4 80.263 152 30 0 1 152 229 380 1.29e-80 245
Msa0687020 AT4G05320.4 80.263 152 30 0 1 152 305 456 1.29e-80 245
Msa0687020 AT1G65350.1 79.605 152 30 1 1 152 1 151 2.07e-79 238
Msa0687020 AT1G65350.1 78.947 152 31 1 1 152 77 227 2.13e-78 235
Msa0687020 AT1G65350.1 70.659 167 35 1 1 153 152 318 1.31e-74 226
Msa0687020 AT5G37640.1 76.316 152 36 0 1 152 79 230 1.34e-78 236
Msa0687020 AT5G37640.1 73.856 153 39 1 1 152 155 307 3.52e-72 219
Msa0687020 AT5G37640.1 69.079 152 47 0 1 152 3 154 8.92e-69 211
Msa0687020 AT3G09790.2 70.395 152 45 0 1 152 3 154 2.22e-66 213
Msa0687020 AT3G09790.2 64.557 158 49 2 1 151 79 236 5.51e-59 193
Msa0687020 AT3G09790.2 58.599 157 58 1 1 150 469 625 6.01e-49 166
Msa0687020 AT3G09790.2 54.717 159 65 1 1 152 393 551 6.73e-49 166
Msa0687020 AT3G09790.2 59.236 157 57 2 1 150 238 394 9.94e-49 166
Msa0687020 AT3G09790.2 54.268 164 63 3 1 152 155 318 1.45e-46 160
Msa0687020 AT3G09790.2 57.143 154 60 2 1 152 319 468 2.01e-46 159
Msa0687020 AT3G09790.1 70.395 152 45 0 1 152 3 154 2.22e-66 213
Msa0687020 AT3G09790.1 64.557 158 49 2 1 151 79 236 5.51e-59 193
Msa0687020 AT3G09790.1 58.599 157 58 1 1 150 469 625 6.01e-49 166
Msa0687020 AT3G09790.1 54.717 159 65 1 1 152 393 551 6.73e-49 166
Msa0687020 AT3G09790.1 59.236 157 57 2 1 150 238 394 9.94e-49 166
Msa0687020 AT3G09790.1 54.268 164 63 3 1 152 155 318 1.45e-46 160
Msa0687020 AT3G09790.1 57.143 154 60 2 1 152 319 468 2.01e-46 159
Msa0687020 AT2G36170.1 100.000 76 0 0 1 76 1 76 1.21e-49 155
Msa0687020 AT2G36170.1 62.162 74 28 0 79 152 3 76 2.21e-26 97.1
Msa0687020 AT3G52590.1 100.000 76 0 0 1 76 1 76 1.21e-49 155
Msa0687020 AT3G52590.1 62.162 74 28 0 79 152 3 76 2.21e-26 97.1
Msa0687020 AT2G47110.2 98.701 77 1 0 1 77 1 77 4.81e-49 155
Msa0687020 AT2G47110.2 62.162 74 28 0 79 152 3 76 4.72e-26 97.1
Msa0687020 AT2G47110.1 98.701 77 1 0 1 77 1 77 4.81e-49 155
Msa0687020 AT2G47110.1 62.162 74 28 0 79 152 3 76 4.72e-26 97.1
Msa0687020 AT1G23410.1 98.701 77 1 0 1 77 1 77 4.87e-49 155
Msa0687020 AT1G23410.1 62.162 74 28 0 79 152 3 76 4.75e-26 97.1
Msa0687020 AT3G62250.1 98.701 77 1 0 1 77 1 77 5.08e-49 155
Msa0687020 AT3G62250.1 62.162 74 28 0 79 152 3 76 4.87e-26 97.1
Msa0687020 AT1G11980.1 79.730 74 15 0 79 152 3 76 2.28e-36 120
Msa0687020 AT1G11980.1 53.846 78 36 0 1 78 1 78 6.49e-24 89.0
Msa0687020 AT1G53930.1 75.342 73 18 0 1 73 86 158 9.01e-33 114
Msa0687020 AT1G53930.1 37.654 162 71 7 8 146 1 155 1.51e-20 82.8
Msa0687020 AT1G53950.1 60.000 75 30 0 1 75 69 143 3.77e-25 94.4
Msa0687020 AT1G53950.1 36.709 158 59 3 1 151 20 143 6.04e-17 73.2
Msa0687020 AT2G46500.3 32.639 144 94 2 7 147 40 183 4.02e-18 80.1
Msa0687020 AT2G46500.1 32.639 144 94 2 7 147 40 183 6.91e-18 79.7
Msa0687020 AT2G46500.2 32.639 144 94 2 7 147 40 183 6.91e-18 79.7
Msa0687020 AT5G24240.1 30.822 146 96 3 7 148 38 182 3.73e-14 68.9
Msa0687020 AT5G24240.2 30.822 146 96 3 7 148 38 182 3.73e-14 68.9
Msa0687020 AT1G53945.1 46.269 67 36 0 1 67 46 112 9.36e-13 61.6
Msa0687020 AT4G12570.1 38.667 75 45 1 1 74 95 169 7.62e-12 62.4
Msa0687020 AT5G42220.2 38.889 72 44 0 1 72 24 95 5.17e-11 60.1
Msa0687020 AT5G42220.1 38.889 72 44 0 1 72 24 95 5.17e-11 60.1

Find 61 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCGTCGTTCTTTCT+TGG 0.186573 4_4:-51692378 None:intergenic
CGATGCGGAGTATGGGTAAT+TGG 0.206513 4_4:-51692292 None:intergenic
CTCGAGAGTGATAGTCTTTC+CGG 0.212687 4_4:-51692445 None:intergenic
CTTGGTCACTTTCTAGTTCT+TGG 0.254399 4_4:+51695822 Msa0687020:three_prime_UTR
AGTTTGAGCGATGCGGAGTA+TGG 0.275126 4_4:-51692300 None:intergenic
GAGCTTCCTTTCATGTCTTT+AGG 0.290193 4_4:-51695870 None:intergenic
ATTAAAGTGAAGACTTTAAC+TGG 0.293921 4_4:+51693541 Msa0687020:CDS
TTCACTTGGTCCTGAGGCTC+AGG 0.315783 4_4:+51693506 Msa0687020:CDS
TCACTTGGTGCTTGCATTGA+GGG 0.346912 4_4:+51695743 Msa0687020:CDS
AAAATCAACCTCTGCTGGTC+AGG 0.390684 4_4:-51693418 None:intergenic
TATAAATTTAGGGTAACTAT+TGG 0.391909 4_4:+51695943 Msa0687020:three_prime_UTR
TGGTTCCTCCCCTGAGCCTC+AGG 0.411655 4_4:-51693516 None:intergenic
AGAGAGAACCTCTGCTGCAC+AGG 0.431937 4_4:-51693646 None:intergenic
TAAAGTCTTCACTTTAATCA+TGG 0.437603 4_4:-51693536 None:intergenic
TTCACTTGGTGCTTGCATTG+AGG 0.449045 4_4:+51695742 Msa0687020:CDS
TTGAGGGGTGGTAATTAGTA+AGG 0.455140 4_4:+51695759 Msa0687020:exon
TCACTTGGTCCTGAGGCTCA+GGG 0.466413 4_4:+51693507 Msa0687020:CDS
GGGTGGTTCTGTGCTTCACT+TGG 0.473264 4_4:+51695728 Msa0687020:CDS
AAATTTAGGGTAACTATTGG+TGG 0.478735 4_4:+51695946 Msa0687020:three_prime_UTR
ATCTTCGTCAAAACTTTGAC+CGG 0.482710 4_4:+51692426 Msa0687020:CDS
ATACGATCAATTGTATCAGT+TGG 0.484906 4_4:-51693589 None:intergenic
CACTTGGTGCTTGCATTGAG+GGG 0.485261 4_4:+51695744 Msa0687020:CDS
AACAATTATGTCCTCAGAGA+TGG 0.486416 4_4:-51695902 None:intergenic
GATGCGGAGTATGGGTAATT+GGG 0.487568 4_4:-51692291 None:intergenic
ACCCTAACTAACCTGGATCT+TGG 0.496140 4_4:-51692502 None:intergenic
CAACGTCAAGGCCAAGATCC+AGG 0.500226 4_4:+51692491 Msa0687020:CDS
CAGCGAAAATCAACCTCTGC+TGG 0.502313 4_4:-51693423 None:intergenic
TGAAGCAACTACCCTGTGGC+GGG 0.503500 4_4:-51692264 None:intergenic
GACATTAGCTTGTTTAGACT+TGG 0.510967 4_4:+51695804 Msa0687020:three_prime_UTR
TGCTGATTACAACATACAAA+AGG 0.513784 4_4:+51693474 Msa0687020:CDS
TGCTGCAGGCTCATATATGC+TGG 0.530859 4_4:+51695660 Msa0687020:intron
GAGAACCTCTGCTGCACAGG+TGG 0.536260 4_4:-51693643 None:intergenic
TAGAAACGGAATCCCGCCAC+AGG 0.536418 4_4:+51692252 Msa0687020:five_prime_UTR
ATCAACCTCTGCTGGTCAGG+AGG 0.542779 4_4:-51693415 None:intergenic
TGATACAATTGATCGTATCA+AGG 0.544622 4_4:+51693594 Msa0687020:CDS
CTTGGCCTTGACGTTGTCGA+TGG 0.546175 4_4:-51692484 None:intergenic
ACAAGCTAATGTCTTGAGAT+CGG 0.547092 4_4:-51695794 None:intergenic
CAACTCTTCACTTGGTCCTG+AGG 0.549503 4_4:+51693500 Msa0687020:CDS
GGGGAACTGTTAGATAGAAA+CGG 0.554012 4_4:+51692238 None:intergenic
GTTTGAGCGATGCGGAGTAT+GGG 0.557728 4_4:-51692299 None:intergenic
GCTAAAGAGTACAACATTGA+GGG 0.566179 4_4:+51695708 Msa0687020:CDS
GCTGGTAAGCAACTGGAAGA+TGG 0.571114 4_4:+51693442 Msa0687020:CDS
GAATTCCACCTGTGCAGCAG+AGG 0.571422 4_4:+51693638 Msa0687020:CDS
CACTTGGTCCTGAGGCTCAG+GGG 0.571962 4_4:+51693508 Msa0687020:CDS
AGCTAAAGAGTACAACATTG+AGG 0.583787 4_4:+51695707 Msa0687020:CDS
TCAACCTCTGCTGGTCAGGA+GGG 0.584867 4_4:-51693414 None:intergenic
AAAGGAATCAACTCTTCACT+TGG 0.589580 4_4:+51693492 Msa0687020:CDS
GTTATTTAGTTTGAGCGATG+CGG 0.602160 4_4:-51692307 None:intergenic
TTGGTGCTTGCATTGAGGGG+TGG 0.618700 4_4:+51695747 Msa0687020:CDS
TCTGAACCTAAAGACATGAA+AGG 0.620725 4_4:+51695864 Msa0687020:three_prime_UTR
GCATCCCTCCTGACCAGCAG+AGG 0.624647 4_4:+51693410 Msa0687020:CDS
TTGAAGCAACTACCCTGTGG+CGG 0.632496 4_4:-51692265 None:intergenic
ATTCATAAACAGAAGTACAA+TGG 0.633072 4_4:+51696030 Msa0687020:three_prime_UTR
TTGGTCCTGAGGCTCAGGGG+AGG 0.642200 4_4:+51693511 Msa0687020:CDS
ATGTTGTTGTAGGACAAAGA+AGG 0.653254 4_4:+51693388 Msa0687020:intron
CGACACCATCGACAACGTCA+AGG 0.661901 4_4:+51692479 Msa0687020:CDS
CGGAAAGACTATCACTCTCG+AGG 0.665568 4_4:+51692446 Msa0687020:CDS
AGAAACGGAATCCCGCCACA+GGG 0.670011 4_4:+51692253 Msa0687020:five_prime_UTR
TCTATACTCGTCCATCTCTG+AGG 0.673542 4_4:+51695891 Msa0687020:three_prime_UTR
AAAGAGTACAACATTGAGGG+TGG 0.697133 4_4:+51695711 Msa0687020:CDS
TATTTGAAGCAACTACCCTG+TGG 0.724318 4_4:-51692268 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATAAATATAAATTGTA+TGG + chr4_4:51693947-51693966 Msa0687020:intron 10.0%
!! TTCTCATAATAAAAAAATTA+TGG - chr4_4:51694803-51694822 None:intergenic 10.0%
!! GATAAAACACTTAAAATAAA+TGG - chr4_4:51692570-51692589 None:intergenic 15.0%
!! AATTTAAGAGTTATAACATT+TGG - chr4_4:51693713-51693732 None:intergenic 15.0%
!!! ACTTTTGAATTGAAAATTAT+TGG + chr4_4:51694130-51694149 Msa0687020:intron 15.0%
!! GTTAAGAGATTTATTTATTT+AGG + chr4_4:51695178-51695197 Msa0687020:intron 15.0%
!! TAAGCATATAAAAGAATGTT+TGG + chr4_4:51694061-51694080 Msa0687020:intron 20.0%
!!! TGCATGAATATTTAACTTAT+AGG - chr4_4:51694091-51694110 None:intergenic 20.0%
!!! TTATTTCTCTAATGATTTGT+AGG - chr4_4:51694404-51694423 None:intergenic 20.0%
!! TACAAATCATTAGAGAAATA+AGG + chr4_4:51694403-51694422 Msa0687020:intron 20.0%
!!! TGTTTTTTAAAGTTTAGAAC+AGG - chr4_4:51694592-51694611 None:intergenic 20.0%
!!! TGCTTGGTTTTATAAATTTA+GGG + chr4_4:51695933-51695952 Msa0687020:three_prime_UTR 20.0%
!!! TATAAATTTAGGGTAACTAT+TGG + chr4_4:51695943-51695962 Msa0687020:three_prime_UTR 20.0%
!!! TTATGAAGAGAACTAGTTTT+GGG - chr4_4:51692696-51692715 None:intergenic 25.0%
!!! ATTATGAAGAGAACTAGTTT+TGG - chr4_4:51692697-51692716 None:intergenic 25.0%
! TTAAAAAATAGCACATAGAC+AGG - chr4_4:51693179-51693198 None:intergenic 25.0%
! AGCTTAGTTTCAGTTTATTT+GGG - chr4_4:51693253-51693272 None:intergenic 25.0%
! TAGCTTAGTTTCAGTTTATT+TGG - chr4_4:51693254-51693273 None:intergenic 25.0%
! ACGTCATATAAAACAGATAA+AGG - chr4_4:51693282-51693301 None:intergenic 25.0%
! TAAAGTCTTCACTTTAATCA+TGG - chr4_4:51693539-51693558 None:intergenic 25.0%
! ATTAAAGTGAAGACTTTAAC+TGG + chr4_4:51693541-51693560 Msa0687020:CDS 25.0%
!! ATTATCTGCCAGTATTATTT+TGG + chr4_4:51693779-51693798 Msa0687020:intron 25.0%
! TTTATCTGCCAAAATAATAC+TGG - chr4_4:51693790-51693809 None:intergenic 25.0%
!!! TTTTAAAGCTTACTCATGTA+AGG + chr4_4:51693863-51693882 Msa0687020:intron 25.0%
! CCAAAAATCATATTAAACAG+AGG - chr4_4:51694019-51694038 None:intergenic 25.0%
!! CCTCTGTTTAATATGATTTT+TGG + chr4_4:51694016-51694035 Msa0687020:intron 25.0%
! CATATAAAAGAATGTTTGGA+GGG + chr4_4:51694065-51694084 Msa0687020:intron 25.0%
!! GTATTTCTTGTTTACATAGT+TGG - chr4_4:51694375-51694394 None:intergenic 25.0%
! GTGTAATATGAGTAAATCTA+TGG - chr4_4:51694673-51694692 None:intergenic 25.0%
!! CCTTTTAGTATGATTCTTTT+CGG + chr4_4:51694736-51694755 Msa0687020:intron 25.0%
!! CTTTTAGTATGATTCTTTTC+GGG + chr4_4:51694737-51694756 Msa0687020:intron 25.0%
! TCAAAAAATTTCAGTTCAGA+AGG + chr4_4:51694770-51694789 Msa0687020:intron 25.0%
! TTCAGTTAATTGTTTGAGAA+GGG - chr4_4:51694934-51694953 None:intergenic 25.0%
! TTTCAGTTAATTGTTTGAGA+AGG - chr4_4:51694935-51694954 None:intergenic 25.0%
! ATCTAGTATTTCACAAACAT+CGG + chr4_4:51695056-51695075 Msa0687020:intron 25.0%
!! TTGTATCTTTTGAATATCCA+GGG + chr4_4:51695308-51695327 Msa0687020:intron 25.0%
!! TAATTGTTCTTTTATGTGCT+TGG + chr4_4:51695917-51695936 Msa0687020:three_prime_UTR 25.0%
!!! GTGCTTGGTTTTATAAATTT+AGG + chr4_4:51695932-51695951 Msa0687020:three_prime_UTR 25.0%
!!! TGATTAAGATACCACTTTTT+GGG - chr4_4:51695995-51696014 None:intergenic 25.0%
!!! TTGATTAAGATACCACTTTT+TGG - chr4_4:51695996-51696015 None:intergenic 25.0%
!! ATTCATAAACAGAAGTACAA+TGG + chr4_4:51696030-51696049 Msa0687020:three_prime_UTR 25.0%
ACTGTTAACTTATGTGTGTT+AGG + chr4_4:51692649-51692668 Msa0687020:intron 30.0%
! CATGATATTTAAGAAAGTGC+TGG - chr4_4:51692856-51692875 None:intergenic 30.0%
GAATTGAATATCAGATCGTA+TGG + chr4_4:51692875-51692894 Msa0687020:intron 30.0%
ATCGCATGTAAACATGAAAT+CGG + chr4_4:51693008-51693027 Msa0687020:intron 30.0%
TCTATAAGATTTAGTGATCC+TGG + chr4_4:51693047-51693066 Msa0687020:intron 30.0%
ATAAACTGAAACTAAGCTAC+AGG + chr4_4:51693255-51693274 Msa0687020:intron 30.0%
TAAACTGAAACTAAGCTACA+GGG + chr4_4:51693256-51693275 Msa0687020:intron 30.0%
! TGCTGATTACAACATACAAA+AGG + chr4_4:51693474-51693493 Msa0687020:CDS 30.0%
ATACGATCAATTGTATCAGT+TGG - chr4_4:51693592-51693611 None:intergenic 30.0%
TGATACAATTGATCGTATCA+AGG + chr4_4:51693594-51693613 Msa0687020:CDS 30.0%
TCCATGCATTTATATGTCAT+TGG + chr4_4:51693821-51693840 Msa0687020:intron 30.0%
ACCAATGACATATAAATGCA+TGG - chr4_4:51693825-51693844 None:intergenic 30.0%
GCATATAAAAGAATGTTTGG+AGG + chr4_4:51694064-51694083 Msa0687020:intron 30.0%
TTCAAAAGTCAAACAGTGTA+TGG - chr4_4:51694119-51694138 None:intergenic 30.0%
AACTTGAACTCAAATTTCCT+CGG + chr4_4:51694224-51694243 Msa0687020:intron 30.0%
GCACATAGATAGTATTAATG+CGG + chr4_4:51694339-51694358 Msa0687020:intron 30.0%
TCATCAGTTTCAATTCTTTC+TGG + chr4_4:51694519-51694538 Msa0687020:intron 30.0%
!!! TAGAACAGGTTTTGAAAAAC+CGG - chr4_4:51694578-51694597 None:intergenic 30.0%
!!! TACACGACTGGTTTTTTAAA+AGG - chr4_4:51694705-51694724 None:intergenic 30.0%
CCGAAAAGAATCATACTAAA+AGG - chr4_4:51694739-51694758 None:intergenic 30.0%
!! TAGCGGATACTAATATTTTG+AGG - chr4_4:51694969-51694988 None:intergenic 30.0%
GTTTGTGAAATACTAGATAC+TGG - chr4_4:51695054-51695073 None:intergenic 30.0%
!! ATTTGGTGCTAATTAGAACT+GGG + chr4_4:51695272-51695291 Msa0687020:intron 30.0%
! CTTGTATCTTTTGAATATCC+AGG + chr4_4:51695307-51695326 Msa0687020:intron 30.0%
! AAATTTAGGGTAACTATTGG+TGG + chr4_4:51695946-51695965 Msa0687020:three_prime_UTR 30.0%
! ATGCTTTTAAACCCAAAAAG+TGG + chr4_4:51695981-51696000 Msa0687020:three_prime_UTR 30.0%
!! GTTATTTAGTTTGAGCGATG+CGG - chr4_4:51692310-51692329 None:intergenic 35.0%
ATCTTCGTCAAAACTTTGAC+CGG + chr4_4:51692426-51692445 Msa0687020:CDS 35.0%
!!! ATTGTGTGCCTTTTAGAGTT+GGG + chr4_4:51692738-51692757 Msa0687020:intron 35.0%
GATCTCTTAGTAATAACGAG+AGG + chr4_4:51692773-51692792 Msa0687020:intron 35.0%
GAGCCGCATATTGAAATAAA+CGG - chr4_4:51692814-51692833 None:intergenic 35.0%
!! TGGGTTTTCACGATTTTGAT+CGG - chr4_4:51692931-51692950 None:intergenic 35.0%
GAGTGAAATCACAAAATCGT+GGG - chr4_4:51692950-51692969 None:intergenic 35.0%
TGAGTGAAATCACAAAATCG+TGG - chr4_4:51692951-51692970 None:intergenic 35.0%
! TGTTTACATGCGATTTTGCA+CGG - chr4_4:51693002-51693021 None:intergenic 35.0%
AACATAAACAACTCAAAGCC+AGG - chr4_4:51693068-51693087 None:intergenic 35.0%
ATGTTGTTGTAGGACAAAGA+AGG + chr4_4:51693388-51693407 Msa0687020:intron 35.0%
AAAGGAATCAACTCTTCACT+TGG + chr4_4:51693492-51693511 Msa0687020:CDS 35.0%
GAACGTGTTGAAGAAAAAGA+AGG + chr4_4:51693616-51693635 Msa0687020:CDS 35.0%
!!! TCTCTCTCTCTCATGTTTTT+TGG + chr4_4:51693670-51693689 Msa0687020:intron 35.0%
!!! CTCTCTCTCTCATGTTTTTT+GGG + chr4_4:51693671-51693690 Msa0687020:intron 35.0%
!! GAGTAAGCTTTAAAAGTGAG+CGG - chr4_4:51693858-51693877 None:intergenic 35.0%
!! GATTTTTGGATGCTTCATCT+AGG + chr4_4:51694030-51694049 Msa0687020:intron 35.0%
AAAATCCCTCTTCTCATCAT+AGG - chr4_4:51694438-51694457 None:intergenic 35.0%
! ATGATGAGAAGAGGGATTTT+AGG + chr4_4:51694186-51694205 Msa0687020:intron 35.0%
! TGATGAGAAGAGGGATTTTA+GGG + chr4_4:51694187-51694206 Msa0687020:intron 35.0%
AGATAGTATTAATGCGGATC+TGG + chr4_4:51694345-51694364 Msa0687020:intron 35.0%
GTTTCAGCTTCATTTCTGTT+TGG + chr4_4:51694541-51694560 Msa0687020:intron 35.0%
ATGGTTGTACTGCAATTCTA+GGG - chr4_4:51694654-51694673 None:intergenic 35.0%
TATGGTTGTACTGCAATTCT+AGG - chr4_4:51694655-51694674 None:intergenic 35.0%
GTTTGAAAACTATACACGAC+TGG - chr4_4:51694717-51694736 None:intergenic 35.0%
! TCATTTTCTCCATCAACTGT+GGG + chr4_4:51694835-51694854 Msa0687020:intron 35.0%
CAAACTAGAGGATGCTTATT+GGG - chr4_4:51694892-51694911 None:intergenic 35.0%
TCAAACTAGAGGATGCTTAT+TGG - chr4_4:51694893-51694912 None:intergenic 35.0%
!! TTAGTATCCGCTATTTCTAG+TGG + chr4_4:51694976-51694995 Msa0687020:intron 35.0%
CGAAAGTTATTGTACTCTTC+CGG + chr4_4:51695008-51695027 Msa0687020:intron 35.0%
ATAATGTGTGAAGTCTGTAC+CGG - chr4_4:51695030-51695049 None:intergenic 35.0%
GTATTTCACAAACATCGGTA+TGG + chr4_4:51695061-51695080 Msa0687020:intron 35.0%
! AGGACAGGGTTAATGTTTTT+GGG + chr4_4:51695134-51695153 Msa0687020:intron 35.0%
TGTATTGCCTATGAATGAAG+AGG + chr4_4:51695233-51695252 Msa0687020:intron 35.0%
GTATTGCCTATGAATGAAGA+GGG + chr4_4:51695234-51695253 Msa0687020:intron 35.0%
!! CATTTGGTGCTAATTAGAAC+TGG + chr4_4:51695271-51695290 Msa0687020:intron 35.0%
CATAAAGTTATGTAGATCCC+TGG - chr4_4:51695328-51695347 None:intergenic 35.0%
! TGCACTGATATGATAGAAAG+CGG - chr4_4:51695374-51695393 None:intergenic 35.0%
TTATACAAGCTTCATCGAGT+TGG + chr4_4:51695421-51695440 Msa0687020:intron 35.0%
GAGTTGGATTGCATATTTAC+TGG + chr4_4:51695437-51695456 Msa0687020:intron 35.0%
TTGATTCTGACGCTTTAATC+TGG + chr4_4:51695509-51695528 Msa0687020:intron 35.0%
!!! ATGTTTTAGCTTTCTTCGCT+AGG + chr4_4:51695564-51695583 Msa0687020:intron 35.0%
! AGCTAAAGAGTACAACATTG+AGG + chr4_4:51695707-51695726 Msa0687020:CDS 35.0%
! GCTAAAGAGTACAACATTGA+GGG + chr4_4:51695708-51695727 Msa0687020:CDS 35.0%
ACAAGCTAATGTCTTGAGAT+CGG - chr4_4:51695797-51695816 None:intergenic 35.0%
!! GACATTAGCTTGTTTAGACT+TGG + chr4_4:51695804-51695823 Msa0687020:three_prime_UTR 35.0%
TCTGAACCTAAAGACATGAA+AGG + chr4_4:51695864-51695883 Msa0687020:three_prime_UTR 35.0%
AACAATTATGTCCTCAGAGA+TGG - chr4_4:51695905-51695924 None:intergenic 35.0%
! TATTTGAAGCAACTACCCTG+TGG - chr4_4:51692271-51692290 None:intergenic 40.0%
TTCTTCTCGTCGTTCTTTCT+TGG - chr4_4:51692381-51692400 None:intergenic 40.0%
ATGAGAAACCCTAACTAACC+TGG - chr4_4:51692512-51692531 None:intergenic 40.0%
ATCAAAATTTCGCGTCTGCT+AGG + chr4_4:51692587-51692606 Msa0687020:intron 40.0%
TCAAAATTTCGCGTCTGCTA+GGG + chr4_4:51692588-51692607 Msa0687020:intron 40.0%
GTGTTAGGTATCACAGAACT+AGG + chr4_4:51692664-51692683 Msa0687020:intron 40.0%
!!! GATTGTGTGCCTTTTAGAGT+TGG + chr4_4:51692737-51692756 Msa0687020:intron 40.0%
!!! TGCCTTTTAGAGTTGGGAAT+GGG + chr4_4:51692744-51692763 Msa0687020:intron 40.0%
TTCCCATTCCCAACTCTAAA+AGG - chr4_4:51692749-51692768 None:intergenic 40.0%
! AACGAGAGGTTATTGCTGTT+TGG + chr4_4:51692787-51692806 Msa0687020:intron 40.0%
!! ACGAGAGGTTATTGCTGTTT+GGG + chr4_4:51692788-51692807 Msa0687020:intron 40.0%
GGGCCGTTTATTTCAATATG+CGG + chr4_4:51692808-51692827 Msa0687020:intron 40.0%
!! GGGTTTTCACGATTTTGATC+GGG - chr4_4:51692930-51692949 None:intergenic 40.0%
GCAGTAGCATGGATCAATTA+AGG - chr4_4:51693220-51693239 None:intergenic 40.0%
TCCATGCTACTGCAATAGAT+TGG + chr4_4:51693227-51693246 Msa0687020:intron 40.0%
TGACTGAGTTTGTCTGTTAG+AGG + chr4_4:51693307-51693326 Msa0687020:intron 40.0%
AACAACATATTCCACTGGTC+AGG - chr4_4:51693376-51693395 None:intergenic 40.0%
CCTACAACAACATATTCCAC+TGG - chr4_4:51693381-51693400 None:intergenic 40.0%
CCAGTGGAATATGTTGTTGT+AGG + chr4_4:51693378-51693397 Msa0687020:intron 40.0%
!!! TCTCTCATGTTTTTTGGGCT+TGG + chr4_4:51693676-51693695 Msa0687020:intron 40.0%
CTCATGTAAGGATTTACTCG+AGG + chr4_4:51693875-51693894 Msa0687020:intron 40.0%
TGTTGCCTATGATGAGAAGA+GGG + chr4_4:51694178-51694197 Msa0687020:intron 40.0%
! ACAGAAAGTATGCAAATCCG+AGG - chr4_4:51694244-51694263 None:intergenic 40.0%
! CTCAACCTGAACTAGTTTCT+AGG + chr4_4:51694275-51694294 Msa0687020:intron 40.0%
CTAGACCTAGAAACTAGTTC+AGG - chr4_4:51694283-51694302 None:intergenic 40.0%
AATCCCTCTTCTCATCATAG+TGG + chr4_4:51694440-51694459 Msa0687020:intron 40.0%
! CTGTTTGGCTTAGACAAAAC+CGG + chr4_4:51694556-51694575 Msa0687020:intron 40.0%
! CTCATTTTCTCCATCAACTG+TGG + chr4_4:51694834-51694853 Msa0687020:intron 40.0%
!! ATTGGGAAAAGTGCTGTCTA+CGG - chr4_4:51694875-51694894 None:intergenic 40.0%
! ATCCTCTAGTTTGATCACTG+AGG + chr4_4:51694899-51694918 Msa0687020:intron 40.0%
CATGACACCACTAGAAATAG+CGG - chr4_4:51694986-51695005 None:intergenic 40.0%
!! GCTATTTCTAGTGGTGTCAT+GGG + chr4_4:51694985-51695004 Msa0687020:intron 40.0%
CAATTAAGCTATGCACCTTG+AGG + chr4_4:51695114-51695133 Msa0687020:intron 40.0%
AAACATTAACCCTGTCCTCA+AGG - chr4_4:51695132-51695151 None:intergenic 40.0%
! GAGGACAGGGTTAATGTTTT+TGG + chr4_4:51695133-51695152 Msa0687020:intron 40.0%
!!! ACAGGGTTAATGTTTTTGGG+TGG + chr4_4:51695137-51695156 Msa0687020:intron 40.0%
!!! CAGGGTTAATGTTTTTGGGT+GGG + chr4_4:51695138-51695157 Msa0687020:intron 40.0%
!!! AGGGTTAATGTTTTTGGGTG+GGG + chr4_4:51695139-51695158 Msa0687020:intron 40.0%
TCAATGCCCTCTTCATTCAT+AGG - chr4_4:51695243-51695262 None:intergenic 40.0%
TGCTAATTAGAACTGGGACT+AGG + chr4_4:51695278-51695297 Msa0687020:intron 40.0%
! AAAGAGTACAACATTGAGGG+TGG + chr4_4:51695711-51695730 Msa0687020:CDS 40.0%
TTGAGGGGTGGTAATTAGTA+AGG + chr4_4:51695759-51695778 Msa0687020:exon 40.0%
!! CTTGGTCACTTTCTAGTTCT+TGG + chr4_4:51695822-51695841 Msa0687020:three_prime_UTR 40.0%
GAGCTTCCTTTCATGTCTTT+AGG - chr4_4:51695873-51695892 None:intergenic 40.0%
GATGCGGAGTATGGGTAATT+GGG - chr4_4:51692294-51692313 None:intergenic 45.0%
CTCGAGAGTGATAGTCTTTC+CGG - chr4_4:51692448-51692467 None:intergenic 45.0%
! GCCAAGATCCAGGTTAGTTA+GGG + chr4_4:51692501-51692520 Msa0687020:intron 45.0%
ACCCTAACTAACCTGGATCT+TGG - chr4_4:51692505-51692524 None:intergenic 45.0%
!!! GTGCCTTTTAGAGTTGGGAA+TGG + chr4_4:51692743-51692762 Msa0687020:intron 45.0%
!! AGTGCTGGCTGATGACTATT+AGG - chr4_4:51692841-51692860 None:intergenic 45.0%
!! TGATCGGGATTTTGACAGCA+AGG - chr4_4:51692915-51692934 None:intergenic 45.0%
ACTCAACTCAGCATCAGTAG+CGG - chr4_4:51692974-51692993 None:intergenic 45.0%
GCCAATCTATTGCAGTAGCA+TGG - chr4_4:51693231-51693250 None:intergenic 45.0%
AACATATTCCACTGGTCAGG+AGG - chr4_4:51693373-51693392 None:intergenic 45.0%
AAAATCAACCTCTGCTGGTC+AGG - chr4_4:51693421-51693440 None:intergenic 45.0%
! GATTTTCGCTGGTAAGCAAC+TGG + chr4_4:51693435-51693454 Msa0687020:CDS 45.0%
GTGTTGCCTATGATGAGAAG+AGG + chr4_4:51694177-51694196 Msa0687020:intron 45.0%
CCACCACTATGATGAGAAGA+GGG - chr4_4:51694446-51694465 None:intergenic 45.0%
CCTCTTCTCATCATAGTGGT+GGG + chr4_4:51694444-51694463 Msa0687020:intron 45.0%
TGCTTTGCACCACGATGAAT+CGG - chr4_4:51694474-51694493 None:intergenic 45.0%
TTCATCGTGGTGCAAAGCAT+CGG + chr4_4:51694475-51694494 Msa0687020:intron 45.0%
GAAACTGATGAACAACACCG+AGG - chr4_4:51694510-51694529 None:intergenic 45.0%
! GGAGTATTTCCCACAGTTGA+TGG - chr4_4:51694847-51694866 None:intergenic 45.0%
CTCCTCAGTGATCAAACTAG+AGG - chr4_4:51694904-51694923 None:intergenic 45.0%
!! CGCTATTTCTAGTGGTGTCA+TGG + chr4_4:51694984-51695003 Msa0687020:intron 45.0%
!!! GGGTTAATGTTTTTGGGTGG+GGG + chr4_4:51695140-51695159 Msa0687020:intron 45.0%
!! TGAATGAAGAGGGCATTGAG+AGG + chr4_4:51695244-51695263 Msa0687020:intron 45.0%
!! GAATGAAGAGGGCATTGAGA+GGG + chr4_4:51695245-51695264 Msa0687020:intron 45.0%
!! TTCACTTGGTGCTTGCATTG+AGG + chr4_4:51695742-51695761 Msa0687020:CDS 45.0%
!! TCACTTGGTGCTTGCATTGA+GGG + chr4_4:51695743-51695762 Msa0687020:CDS 45.0%
TCTATACTCGTCCATCTCTG+AGG + chr4_4:51695891-51695910 Msa0687020:three_prime_UTR 45.0%
!!! ATTTTTTTTCTTAATTATAT+TGG + chr4_4:51695607-51695626 Msa0687020:intron 5.0%
TTGAAGCAACTACCCTGTGG+CGG - chr4_4:51692268-51692287 None:intergenic 50.0%
CGATGCGGAGTATGGGTAAT+TGG - chr4_4:51692295-51692314 None:intergenic 50.0%
GTTTGAGCGATGCGGAGTAT+GGG - chr4_4:51692302-51692321 None:intergenic 50.0%
AGTTTGAGCGATGCGGAGTA+TGG - chr4_4:51692303-51692322 None:intergenic 50.0%
CGGAAAGACTATCACTCTCG+AGG + chr4_4:51692446-51692465 Msa0687020:CDS 50.0%
! GGCCAAGATCCAGGTTAGTT+AGG + chr4_4:51692500-51692519 Msa0687020:intron 50.0%
CAGCGAAAATCAACCTCTGC+TGG - chr4_4:51693426-51693445 None:intergenic 50.0%
!! CAGCAGAGGTTGATTTTCGC+TGG + chr4_4:51693424-51693443 Msa0687020:CDS 50.0%
GCTGGTAAGCAACTGGAAGA+TGG + chr4_4:51693442-51693461 Msa0687020:CDS 50.0%
CAACTCTTCACTTGGTCCTG+AGG + chr4_4:51693500-51693519 Msa0687020:CDS 50.0%
GGATTTACTCGAGGATCACG+TGG + chr4_4:51693884-51693903 Msa0687020:intron 50.0%
CCCTCTTCTCATCATAGTGG+TGG + chr4_4:51694443-51694462 Msa0687020:intron 50.0%
CCCACCACTATGATGAGAAG+AGG - chr4_4:51694447-51694466 None:intergenic 50.0%
TTTGCACCACGATGAATCGG+AGG - chr4_4:51694471-51694490 None:intergenic 50.0%
! AGCATCGGAGTTCTGTTCCT+CGG + chr4_4:51694490-51694509 Msa0687020:intron 50.0%
AAGCTATGCACCTTGAGGAC+AGG + chr4_4:51695119-51695138 Msa0687020:intron 50.0%
AGCTATGCACCTTGAGGACA+GGG + chr4_4:51695120-51695139 Msa0687020:intron 50.0%
!! TTGGGTGGGGGAGTATTGAT+AGG + chr4_4:51695152-51695171 Msa0687020:intron 50.0%
! GGCATTGAGAGGGAGTCATT+TGG + chr4_4:51695255-51695274 Msa0687020:intron 50.0%
!! CACCTGTTGTAACTTGCTGC+AGG + chr4_4:51695646-51695665 Msa0687020:intron 50.0%
AGCCTGCAGCAAGTTACAAC+AGG - chr4_4:51695651-51695670 None:intergenic 50.0%
TGCTGCAGGCTCATATATGC+TGG + chr4_4:51695660-51695679 Msa0687020:intron 50.0%
!! CACTTGGTGCTTGCATTGAG+GGG + chr4_4:51695744-51695763 Msa0687020:CDS 50.0%
TAGAAACGGAATCCCGCCAC+AGG + chr4_4:51692252-51692271 Msa0687020:five_prime_UTR 55.0%
AGAAACGGAATCCCGCCACA+GGG + chr4_4:51692253-51692272 Msa0687020:five_prime_UTR 55.0%
TGAAGCAACTACCCTGTGGC+GGG - chr4_4:51692267-51692286 None:intergenic 55.0%
CGACACCATCGACAACGTCA+AGG + chr4_4:51692479-51692498 Msa0687020:CDS 55.0%
!! CTTGGCCTTGACGTTGTCGA+TGG - chr4_4:51692487-51692506 None:intergenic 55.0%
CAACGTCAAGGCCAAGATCC+AGG + chr4_4:51692491-51692510 Msa0687020:CDS 55.0%
GCATCATTCCTCCTGACCAG+TGG + chr4_4:51693362-51693381 Msa0687020:intron 55.0%
TCAACCTCTGCTGGTCAGGA+GGG - chr4_4:51693417-51693436 None:intergenic 55.0%
ATCAACCTCTGCTGGTCAGG+AGG - chr4_4:51693418-51693437 None:intergenic 55.0%
TTCACTTGGTCCTGAGGCTC+AGG + chr4_4:51693506-51693525 Msa0687020:CDS 55.0%
TCACTTGGTCCTGAGGCTCA+GGG + chr4_4:51693507-51693526 Msa0687020:CDS 55.0%
GAATTCCACCTGTGCAGCAG+AGG + chr4_4:51693638-51693657 Msa0687020:CDS 55.0%
AGAGAGAACCTCTGCTGCAC+AGG - chr4_4:51693649-51693668 None:intergenic 55.0%
ACTCGAGGATCACGTGGTCT+AGG + chr4_4:51693890-51693909 Msa0687020:intron 55.0%
!! AAAGTGCTGTCTACGGCGGA+TGG - chr4_4:51694868-51694887 None:intergenic 55.0%
!! GGGAAAAGTGCTGTCTACGG+CGG - chr4_4:51694872-51694891 None:intergenic 55.0%
! GGGTGGTTCTGTGCTTCACT+TGG + chr4_4:51695728-51695747 Msa0687020:CDS 55.0%
! TTGGTGCTTGCATTGAGGGG+TGG + chr4_4:51695747-51695766 Msa0687020:CDS 55.0%
CACTTGGTCCTGAGGCTCAG+GGG + chr4_4:51693508-51693527 Msa0687020:CDS 60.0%
GAGAACCTCTGCTGCACAGG+TGG - chr4_4:51693646-51693665 None:intergenic 60.0%
GTGGGTCCTCCGATTCATCG+TGG + chr4_4:51694462-51694481 Msa0687020:intron 60.0%
GCATCCCTCCTGACCAGCAG+AGG + chr4_4:51693410-51693429 Msa0687020:CDS 65.0%
TTGGTCCTGAGGCTCAGGGG+AGG + chr4_4:51693511-51693530 Msa0687020:CDS 65.0%
TGGTTCCTCCCCTGAGCCTC+AGG - chr4_4:51693519-51693538 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 51692239 51696079 51692239 ID=Msa0687020;Name=Msa0687020
chr4_4 mRNA 51692239 51696079 51692239 ID=Msa0687020-mRNA-1;Parent=Msa0687020;Name=Msa0687020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=181|1|1|1|1|1|3|303|153
chr4_4 exon 51692239 51692512 51692239 ID=Msa0687020-mRNA-1:exon:13447;Parent=Msa0687020-mRNA-1
chr4_4 exon 51693400 51693659 51693400 ID=Msa0687020-mRNA-1:exon:13448;Parent=Msa0687020-mRNA-1
chr4_4 exon 51695668 51696079 51695668 ID=Msa0687020-mRNA-1:exon:13449;Parent=Msa0687020-mRNA-1
chr4_4 five_prime_UTR 51692239 51692419 51692239 ID=Msa0687020-mRNA-1:five_prime_utr;Parent=Msa0687020-mRNA-1
chr4_4 CDS 51692420 51692512 51692420 ID=Msa0687020-mRNA-1:cds;Parent=Msa0687020-mRNA-1
chr4_4 CDS 51693400 51693659 51693400 ID=Msa0687020-mRNA-1:cds;Parent=Msa0687020-mRNA-1
chr4_4 CDS 51695668 51695776 51695668 ID=Msa0687020-mRNA-1:cds;Parent=Msa0687020-mRNA-1
chr4_4 three_prime_UTR 51695777 51696079 51695777 ID=Msa0687020-mRNA-1:three_prime_utr;Parent=Msa0687020-mRNA-1
Gene Sequence

>Msa0687020

ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGAGTAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGTTGATTTTCGCTGGTAAGCAACTGGAAGATGGTCGCACTCTTGCTGATTACAACATACAAAAGGAATCAACTCTTCACTTGGTCCTGAGGCTCAGGGGAGGAACCATGATTAAAGTGAAGACTTTAACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACAATTGATCGTATCAAGGAACGTGTTGAAGAAAAAGAAGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAG
Protein sequence

>Msa0687020

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN*