Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333220 | XP_013464597.1 | 87.500 | 376 | 27 | 3 | 1 | 357 | 1 | 375 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333220 | sp|Q9LKA5|MORF8_ARATH | 55.923 | 363 | 115 | 5 | 1 | 318 | 1 | 363 | 4.53e-97 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088610 | Msa0333220 | 0.808073 | 3.705326e-50 | -8.615850e-47 |
| Msa0139110 | Msa0333220 | 0.810716 | 1.003649e-50 | -8.615850e-47 |
| Msa0227530 | Msa0333220 | 0.857003 | 2.194757e-62 | -8.615850e-47 |
| Msa0294640 | Msa0333220 | 0.844111 | 9.256203e-59 | -8.615850e-47 |
| Msa0329930 | Msa0333220 | 0.855564 | 5.796242e-62 | -8.615850e-47 |
| Msa0333220 | Msa0743920 | 0.809626 | 1.724604e-50 | -8.615850e-47 |
| Msa0333220 | Msa0748180 | 0.821815 | 3.304326e-53 | -8.615850e-47 |
| Msa0333220 | Msa0864230 | 0.815622 | 8.413378e-52 | -8.615850e-47 |
| Msa0333220 | Msa1071040 | 0.855773 | 5.036450e-62 | -8.615850e-47 |
| Msa0333220 | Msa1115190 | 0.846751 | 1.784466e-59 | -8.615850e-47 |
| Msa0333220 | Msa1118440 | 0.854268 | 1.378084e-61 | -8.615850e-47 |
| Msa0333220 | Msa1159030 | 0.849296 | 3.542183e-60 | -8.615850e-47 |
| Msa0333220 | Msa1163980 | 0.853400 | 2.449589e-61 | -8.615850e-47 |
| Msa0333220 | Msa1321200 | 0.804198 | 2.423517e-49 | -8.615850e-47 |
| Msa0333220 | Msa1340560 | 0.852552 | 4.284664e-61 | -8.615850e-47 |
| Msa0333220 | Msa1428870 | 0.840811 | 6.944208e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333220 | MtrunA17_Chr2g0316311 | 87.500 | 376 | 27 | 3 | 1 | 357 | 1 | 375 | 0.0 | 572 |
| Msa0333220 | MtrunA17_Chr1g0148081 | 79.109 | 359 | 41 | 7 | 1 | 357 | 1 | 327 | 0.0 | 518 |
| Msa0333220 | MtrunA17_Chr2g0316321 | 68.306 | 183 | 33 | 3 | 1 | 183 | 1 | 158 | 9.48e-74 | 226 |
| Msa0333220 | MtrunA17_Chr4g0067641 | 52.973 | 185 | 76 | 4 | 15 | 193 | 9 | 188 | 5.06e-60 | 194 |
| Msa0333220 | MtrunA17_Chr1g0166671 | 46.471 | 170 | 82 | 4 | 68 | 235 | 54 | 216 | 7.57e-43 | 148 |
| Msa0333220 | MtrunA17_Chr1g0187251 | 44.720 | 161 | 80 | 4 | 76 | 234 | 80 | 233 | 1.45e-40 | 142 |
| Msa0333220 | MtrunA17_Chr2g0280611 | 47.794 | 136 | 63 | 3 | 85 | 214 | 77 | 210 | 1.41e-37 | 135 |
| Msa0333220 | MtrunA17_Chr2g0277431 | 32.210 | 267 | 154 | 9 | 23 | 285 | 56 | 299 | 8.96e-24 | 102 |
| Msa0333220 | MtrunA17_Chr6g0467031 | 34.091 | 176 | 91 | 7 | 17 | 187 | 14 | 169 | 1.16e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333220 | AT3G15000.1 | 55.923 | 363 | 115 | 5 | 1 | 318 | 1 | 363 | 4.61e-98 | 296 |
| Msa0333220 | AT3G06790.2 | 52.660 | 188 | 76 | 4 | 15 | 193 | 9 | 192 | 3.16e-56 | 184 |
| Msa0333220 | AT3G06790.1 | 52.128 | 188 | 77 | 4 | 15 | 193 | 9 | 192 | 3.53e-55 | 181 |
| Msa0333220 | AT1G72530.1 | 45.578 | 147 | 75 | 2 | 69 | 213 | 29 | 172 | 5.08e-46 | 155 |
| Msa0333220 | AT1G72530.2 | 44.371 | 151 | 75 | 3 | 69 | 213 | 29 | 176 | 9.31e-44 | 150 |
| Msa0333220 | AT1G32580.1 | 37.395 | 238 | 127 | 7 | 10 | 235 | 1 | 228 | 1.35e-42 | 148 |
| Msa0333220 | AT2G35240.1 | 48.125 | 160 | 75 | 5 | 78 | 235 | 78 | 231 | 1.95e-42 | 147 |
| Msa0333220 | AT1G11430.1 | 47.101 | 138 | 70 | 2 | 85 | 221 | 77 | 212 | 8.61e-38 | 135 |
| Msa0333220 | AT1G53260.1 | 48.207 | 251 | 86 | 10 | 136 | 354 | 3 | 241 | 3.24e-37 | 135 |
| Msa0333220 | AT1G53260.2 | 73.913 | 92 | 24 | 0 | 136 | 227 | 3 | 94 | 4.05e-37 | 134 |
| Msa0333220 | AT4G20020.2 | 30.408 | 319 | 171 | 10 | 5 | 309 | 4 | 285 | 4.19e-30 | 119 |
| Msa0333220 | AT4G20020.1 | 30.408 | 319 | 171 | 10 | 5 | 309 | 4 | 285 | 8.84e-30 | 118 |
| Msa0333220 | AT5G44780.1 | 38.095 | 105 | 63 | 2 | 91 | 193 | 78 | 182 | 5.06e-19 | 89.0 |
Find 180 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAATGAATTTGCGTTTC+AGG | 0.114389 | 2_4:+50846392 | Msa0333220:three_prime_UTR |
| GGTGGTTAGGGTTAGGGTTT+TGG | 0.131447 | 2_4:-50843424 | None:intergenic |
| GTAATGTAAATTAGGGTTTA+TGG | 0.136645 | 2_4:-50843327 | None:intergenic |
| AATGAAATGTAATGTAAATT+AGG | 0.201886 | 2_4:-50843335 | None:intergenic |
| AAAACCTTCGCTGAGGTTAT+TGG | 0.223039 | 2_4:+50843750 | Msa0333220:CDS |
| ACTAGACACTACTTTGCTTT+TGG | 0.255524 | 2_4:+50844935 | Msa0333220:CDS |
| CTAGGTGAGCCCTTCATTAA+TGG | 0.274941 | 2_4:+50845699 | Msa0333220:intron |
| CCTCCTCCCAACAGTGGATA+TGG | 0.278148 | 2_4:+50846122 | Msa0333220:CDS |
| TCAACGATCCTAACCCTAAC+TGG | 0.286264 | 2_4:+50843607 | Msa0333220:CDS |
| GAGGAAGGTGGTTAGGGTTA+GGG | 0.291280 | 2_4:-50843430 | None:intergenic |
| AGAGGAAGGTGGTTAGGGTT+AGG | 0.294206 | 2_4:-50843431 | None:intergenic |
| GAGGCATCCCTGCCATGTTC+TGG | 0.294548 | 2_4:-50846178 | None:intergenic |
| TAATGTAAATTAGGGTTTAT+GGG | 0.303551 | 2_4:-50843326 | None:intergenic |
| GGAGGAGGTCCGCTCATGTT+GGG | 0.310269 | 2_4:-50846080 | None:intergenic |
| ATGAAATGTAATGTAAATTA+GGG | 0.318494 | 2_4:-50843334 | None:intergenic |
| AGCGAGAGAGGAAGGTGGTT+AGG | 0.323331 | 2_4:-50843437 | None:intergenic |
| GAAAGAGAGAGCGGAGGATG+AGG | 0.328429 | 2_4:-50843484 | None:intergenic |
| AGCAAAATCGTTTCCTTTGG+TGG | 0.332597 | 2_4:-50843639 | None:intergenic |
| AGGGTATCCCGCAGCATTGT+TGG | 0.342420 | 2_4:-50845931 | None:intergenic |
| TTGGGAGGGTAAGCATTGTT+TGG | 0.344705 | 2_4:-50845912 | None:intergenic |
| ATGATCCAGACAAATTCTTT+TGG | 0.345391 | 2_4:+50846271 | Msa0333220:three_prime_UTR |
| TGCATATCCGCCTTGGTTGT+TGG | 0.345680 | 2_4:-50845979 | None:intergenic |
| GGTGGACGATTGGCCCAGTT+AGG | 0.355387 | 2_4:-50843621 | None:intergenic |
| GAGGAGGTCCGCTCATGTTG+GGG | 0.358951 | 2_4:-50846079 | None:intergenic |
| TTATTTGACCATCCAGCATT+TGG | 0.363386 | 2_4:-50846200 | None:intergenic |
| AGGCCTCCAGTGCAGAATTC+TGG | 0.365211 | 2_4:+50845882 | Msa0333220:CDS |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_4:-50846005 | None:intergenic |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_4:-50846029 | None:intergenic |
| AGTGGTGGTTGTGGTGGAGA+TGG | 0.373183 | 2_4:-50843460 | None:intergenic |
| CAGTAGACTCCTGACCTGTT+TGG | 0.380112 | 2_4:+50846224 | Msa0333220:exon |
| GCGAGAGAGGAAGGTGGTTA+GGG | 0.384328 | 2_4:-50843436 | None:intergenic |
| GCATATCCGCCTTGGTTGTT+GGG | 0.388442 | 2_4:-50845978 | None:intergenic |
| GGGTATCCCGCAGCATTGTT+GGG | 0.391876 | 2_4:-50845930 | None:intergenic |
| GGGTATCCACCGCCTTGATT+TGG | 0.394832 | 2_4:-50846053 | None:intergenic |
| TGAAGAGAAGAGAGTGAGAT+TGG | 0.397833 | 2_4:-50843359 | None:intergenic |
| TCATGATACTTGGGATCATA+TGG | 0.400148 | 2_4:-50845732 | None:intergenic |
| GGAGGAGGTCGGCTCATGTT+AGG | 0.401789 | 2_4:-50846104 | None:intergenic |
| AGGGTATCCACCAGCATTGT+TGG | 0.402771 | 2_4:-50845955 | None:intergenic |
| TTCACATTCAAATAAGAATC+AGG | 0.404060 | 2_4:-50845118 | None:intergenic |
| GGAGGGTAAGCATTGTTTGG+AGG | 0.406350 | 2_4:-50845909 | None:intergenic |
| ATTGGCCAAAAGAATTTGTC+TGG | 0.406830 | 2_4:-50846276 | None:intergenic |
| TCGAGCAAAATCGTTTCCTT+TGG | 0.407598 | 2_4:-50843642 | None:intergenic |
| AACCCACTCCTCATGATACT+TGG | 0.409695 | 2_4:-50845742 | None:intergenic |
| GGAAGAGGTGGTAGGGCGAG+TGG | 0.413172 | 2_4:-50843583 | None:intergenic |
| CGATTGGCCCAGTTAGGGTT+AGG | 0.415665 | 2_4:-50843615 | None:intergenic |
| TGCTCCTCAAAATAACTATC+CGG | 0.416452 | 2_4:+50846145 | Msa0333220:CDS |
| TAGGTGAGCCCTTCATTAAT+GGG | 0.416500 | 2_4:+50845700 | Msa0333220:intron |
| AATGTGAAGGAGCAAGATTA+TGG | 0.421958 | 2_4:+50845133 | Msa0333220:CDS |
| CGTTTCCTTTGGTGGACGAT+TGG | 0.426666 | 2_4:-50843631 | None:intergenic |
| ACGGGAGGTGATGGCGGCGG+CGG | 0.427683 | 2_4:-50843529 | None:intergenic |
| GAGAGCGGAGGATGAGGGAG+TGG | 0.431055 | 2_4:-50843478 | None:intergenic |
| GTGGAGAAAGCGCGGAAGGA+AGG | 0.431154 | 2_4:-50843564 | None:intergenic |
| TGGTGGAGATGGAGCGAGAG+AGG | 0.431194 | 2_4:-50843449 | None:intergenic |
| ACCTGAAACGCAAATTCATT+AGG | 0.432576 | 2_4:-50846393 | None:intergenic |
| GTTAGGATCGTTGAGGGAAG+AGG | 0.434294 | 2_4:-50843598 | None:intergenic |
| AAAGGAACAGGCGCAATGAT+AGG | 0.434856 | 2_4:+50845787 | Msa0333220:CDS |
| GGAAGGGAGGAGGATGTGAC+GGG | 0.435127 | 2_4:-50843547 | None:intergenic |
| GAGGATGTGACGGGAGGTGA+TGG | 0.435767 | 2_4:-50843538 | None:intergenic |
| TGAACACTGGCTTGTGGTTG+TGG | 0.437124 | 2_4:+50843677 | Msa0333220:CDS |
| GGAGATGGAGCGAGAGAGGA+AGG | 0.440256 | 2_4:-50843445 | None:intergenic |
| GGGTATCCACCAGCATTGTT+GGG | 0.447108 | 2_4:-50845954 | None:intergenic |
| AAAGAGGACGGAGACGGCGG+AGG | 0.447518 | 2_4:-50843506 | None:intergenic |
| GCGTATCCGCCTTGATTTGG+AGG | 0.451222 | 2_4:-50846026 | None:intergenic |
| GGATGAGGGAGTGGTGGTTG+TGG | 0.454915 | 2_4:-50843469 | None:intergenic |
| AAAGAGAGAGCGGAGGATGA+GGG | 0.457651 | 2_4:-50843483 | None:intergenic |
| CGCAAATTCATTAGGAAGAA+GGG | 0.463797 | 2_4:-50846385 | None:intergenic |
| CTCGTGCTAATGAAAGGAAC+AGG | 0.465708 | 2_4:+50845775 | Msa0333220:CDS |
| GAAGAGAAGAGAGTGAGATT+GGG | 0.468266 | 2_4:-50843358 | None:intergenic |
| TCTCTGGTAGGATCACCTTC+AGG | 0.468615 | 2_4:-50843705 | None:intergenic |
| GCGTATCCGCCTTGATTTGG+AGG | 0.469236 | 2_4:-50846002 | None:intergenic |
| TATCCACCGCCTTGATTTGG+AGG | 0.469888 | 2_4:-50846050 | None:intergenic |
| TGGAGAAAGCGCGGAAGGAA+GGG | 0.471704 | 2_4:-50843563 | None:intergenic |
| AAGCAGTGTCTCTTCCAAAC+AGG | 0.473380 | 2_4:-50846238 | None:intergenic |
| GGAAGAACCCATCGAACCTT+GGG | 0.475427 | 2_4:-50845097 | None:intergenic |
| GTGATGGCGGCGGCGGAAAG+AGG | 0.477525 | 2_4:-50843522 | None:intergenic |
| AGGAGGAGGTCCGCTCATGT+TGG | 0.477573 | 2_4:-50846081 | None:intergenic |
| GTGGACGATTGGCCCAGTTA+GGG | 0.478383 | 2_4:-50843620 | None:intergenic |
| GGAGAACGCGAGAGAAGATC+TGG | 0.480186 | 2_4:-50843401 | None:intergenic |
| ATTCATTACTTTATCTACAT+TGG | 0.483104 | 2_4:-50846294 | None:intergenic |
| AGCGGAGGATGAGGGAGTGG+TGG | 0.484263 | 2_4:-50843475 | None:intergenic |
| TGAGGGAGTGGTGGTTGTGG+TGG | 0.485027 | 2_4:-50843466 | None:intergenic |
| GGGTAAGCATTGTTTGGAGG+TGG | 0.485288 | 2_4:-50845906 | None:intergenic |
| CAACAAAACCAGAACATGGC+AGG | 0.486858 | 2_4:+50846170 | Msa0333220:CDS |
| ACGCAAATTCATTAGGAAGA+AGG | 0.487709 | 2_4:-50846386 | None:intergenic |
| ACTATCAATAATCTCATCTC+TGG | 0.490512 | 2_4:-50843721 | None:intergenic |
| CGGCGGAAAGAGGACGGAGA+CGG | 0.496211 | 2_4:-50843512 | None:intergenic |
| AACTGCTTGCCCATTAATGA+AGG | 0.499721 | 2_4:-50845709 | None:intergenic |
| GCAGGGATGCCTCCAAATGC+TGG | 0.500963 | 2_4:+50846188 | Msa0333220:CDS |
| CAGAACTGCCCAAGGTTCGA+TGG | 0.506009 | 2_4:+50845089 | Msa0333220:intron |
| GCTCCTCAAAATAACTATCC+GGG | 0.508204 | 2_4:+50846146 | Msa0333220:CDS |
| ATCCGCCTTGGTTGTTGGGA+GGG | 0.510147 | 2_4:-50845974 | None:intergenic |
| AGGAAGAACCCATCGAACCT+TGG | 0.510570 | 2_4:-50845098 | None:intergenic |
| CGGAAAGAGGACGGAGACGG+CGG | 0.514824 | 2_4:-50843509 | None:intergenic |
| TTTGACCATCCAGCATTTGG+AGG | 0.515696 | 2_4:-50846197 | None:intergenic |
| ATCCACCGCCTTGATTTGGA+GGG | 0.518306 | 2_4:-50846049 | None:intergenic |
| GTGTCTCTTCCAAACAGGTC+AGG | 0.518983 | 2_4:-50846233 | None:intergenic |
| GGAGGTCCGCTCATGTTGGG+GGG | 0.523071 | 2_4:-50846077 | None:intergenic |
| AGGAAGGGAGGAGGATGTGA+CGG | 0.524718 | 2_4:-50843548 | None:intergenic |
| TACCCTCCCAACAATGCTGC+GGG | 0.525044 | 2_4:+50845924 | Msa0333220:CDS |
| AGGAGCACCATATCCACTGT+TGG | 0.526278 | 2_4:-50846129 | None:intergenic |
| AAGCGCGGAAGGAAGGGAGG+AGG | 0.530215 | 2_4:-50843557 | None:intergenic |
| GCCCCTCCAAATCAAGGCGG+TGG | 0.530754 | 2_4:+50846047 | Msa0333220:CDS |
| TCCAATTGCAGAACTGCCCA+AGG | 0.531629 | 2_4:+50845081 | Msa0333220:intron |
| ATCTATAAAATCTCATTACA+TGG | 0.534196 | 2_4:-50846348 | None:intergenic |
| GGATACCCTCCCAACAATGC+TGG | 0.535372 | 2_4:+50845945 | Msa0333220:CDS |
| TTGGAGGTGCATATCCGCCT+TGG | 0.535415 | 2_4:-50845986 | None:intergenic |
| GGAGCACCATATCCACTGTT+GGG | 0.536295 | 2_4:-50846128 | None:intergenic |
| GTTAGGGTTAGGATCGTTGA+GGG | 0.537327 | 2_4:-50843604 | None:intergenic |
| GTGACGGGAGGTGATGGCGG+CGG | 0.538120 | 2_4:-50843532 | None:intergenic |
| ACCCACTCCTCATGATACTT+GGG | 0.538686 | 2_4:-50845741 | None:intergenic |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_4:+50846017 | Msa0333220:CDS |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_4:+50846041 | Msa0333220:CDS |
| CGTTGAGGGAAGAGGTGGTA+GGG | 0.541372 | 2_4:-50843590 | None:intergenic |
| GGATATGCACCTCCAAATCA+AGG | 0.542378 | 2_4:+50845993 | Msa0333220:CDS |
| TATCCGCCTTGGTTGTTGGG+AGG | 0.545068 | 2_4:-50845975 | None:intergenic |
| GAGGCCTACTTTGCATGTCT+CGG | 0.545839 | 2_4:-50845866 | None:intergenic |
| AGGAGGTCCGCTCATGTTGG+GGG | 0.547032 | 2_4:-50846078 | None:intergenic |
| CGTATCCGCCTTGATTTGGA+GGG | 0.547247 | 2_4:-50846025 | None:intergenic |
| TGATTCTTATTTGAATGTGA+AGG | 0.548912 | 2_4:+50845120 | Msa0333220:CDS |
| TATCCACTGTTGGGAGGAGG+AGG | 0.551690 | 2_4:-50846119 | None:intergenic |
| GATGGAGCGAGAGAGGAAGG+TGG | 0.551999 | 2_4:-50843442 | None:intergenic |
| AGAAAGCGCGGAAGGAAGGG+AGG | 0.553501 | 2_4:-50843560 | None:intergenic |
| ACATAATATAAATCATGTCT+CGG | 0.553942 | 2_4:-50846322 | None:intergenic |
| GGAGGTCGGCTCATGTTAGG+AGG | 0.555007 | 2_4:-50846101 | None:intergenic |
| TTTACAGTGAAGAAGAAGCT+AGG | 0.556151 | 2_4:+50844891 | Msa0333220:intron |
| ATCCACCAGCATTGTTGGGA+GGG | 0.556921 | 2_4:-50845950 | None:intergenic |
| AGGGAGGAGGATGTGACGGG+AGG | 0.558887 | 2_4:-50843544 | None:intergenic |
| TCAATAATCTCATCTCTGGT+AGG | 0.562548 | 2_4:-50843717 | None:intergenic |
| CCATATCCACTGTTGGGAGG+AGG | 0.564256 | 2_4:-50846122 | None:intergenic |
| AGAACTGCCCAAGGTTCGAT+GGG | 0.567973 | 2_4:+50845090 | Msa0333220:intron |
| ACAATGCTCGTGCTAATGAA+AGG | 0.568451 | 2_4:+50845769 | Msa0333220:CDS |
| CGGCTCATGTTAGGAGGAGG+AGG | 0.570215 | 2_4:-50846095 | None:intergenic |
| CAACGATCCTAACCCTAACT+GGG | 0.571742 | 2_4:+50843608 | Msa0333220:CDS |
| GCGAGTGGAGAAAGCGCGGA+AGG | 0.573434 | 2_4:-50843568 | None:intergenic |
| ATCCCGCAGCATTGTTGGGA+GGG | 0.574116 | 2_4:-50845926 | None:intergenic |
| TGAAAGGAGAAGGGAAAATG+TGG | 0.578997 | 2_4:+50845839 | Msa0333220:CDS |
| GATGTGACGGGAGGTGATGG+CGG | 0.579618 | 2_4:-50843535 | None:intergenic |
| TCCACCGCCTTGATTTGGAG+GGG | 0.583520 | 2_4:-50846048 | None:intergenic |
| CTTGACCTGTCGTTATTACG+AGG | 0.583533 | 2_4:-50845810 | None:intergenic |
| TACCCTCCCAACAATGCTGG+TGG | 0.587922 | 2_4:+50845948 | Msa0333220:CDS |
| GGTGGACCAGAATTCTGCAC+TGG | 0.588014 | 2_4:-50845888 | None:intergenic |
| TCGTTGAGGGAAGAGGTGGT+AGG | 0.588704 | 2_4:-50843591 | None:intergenic |
| ATCCCAAGTATCATGAGGAG+TGG | 0.594093 | 2_4:+50845739 | Msa0333220:CDS |
| ACGGCGGAGGAAAGAGAGAG+CGG | 0.594368 | 2_4:-50843493 | None:intergenic |
| AGGATCGTTGAGGGAAGAGG+TGG | 0.594815 | 2_4:-50843595 | None:intergenic |
| CACTGTTGGGAGGAGGAGGT+CGG | 0.595244 | 2_4:-50846115 | None:intergenic |
| ATAGGCCTCGTAATAACGAC+AGG | 0.597786 | 2_4:+50845805 | Msa0333220:CDS |
| TCTCTTCACACACACTGCGA+TGG | 0.598615 | 2_4:+50843374 | Msa0333220:exon |
| GGTCGGCTCATGTTAGGAGG+AGG | 0.598819 | 2_4:-50846098 | None:intergenic |
| TGGCGGCGGCGGAAAGAGGA+CGG | 0.599545 | 2_4:-50843518 | None:intergenic |
| GAGCTTTCGTACAAACTGAA+AGG | 0.599639 | 2_4:+50844974 | Msa0333220:CDS |
| TGAACCGAGACATGCAAAGT+AGG | 0.601888 | 2_4:+50845862 | Msa0333220:CDS |
| GGACCAGAATTCTGCACTGG+AGG | 0.603026 | 2_4:-50845885 | None:intergenic |
| CTGGGCCAATCGTCCACCAA+AGG | 0.609373 | 2_4:+50843626 | Msa0333220:CDS |
| TCCCAAGTATCATGAGGAGT+GGG | 0.609416 | 2_4:+50845740 | Msa0333220:CDS |
| CTCCTCAAAATAACTATCCG+GGG | 0.615375 | 2_4:+50846147 | Msa0333220:CDS |
| GGATGCCTCCAAATGCTGGA+TGG | 0.615571 | 2_4:+50846192 | Msa0333220:CDS |
| TATCCACCAGCATTGTTGGG+AGG | 0.617145 | 2_4:-50845951 | None:intergenic |
| GTATCCGCCTTGATTTGGAG+GGG | 0.625704 | 2_4:-50846024 | None:intergenic |
| TATCCCGCAGCATTGTTGGG+AGG | 0.627821 | 2_4:-50845927 | None:intergenic |
| AACAAAACCAGAACATGGCA+GGG | 0.630196 | 2_4:+50846171 | Msa0333220:CDS |
| ACTGCTTGCCCATTAATGAA+GGG | 0.632956 | 2_4:-50845708 | None:intergenic |
| GTGAAGGAGCAAGATTATGG+AGG | 0.633136 | 2_4:+50845136 | Msa0333220:CDS |
| TTACCCTCCCAACAATGCTG+CGG | 0.636542 | 2_4:+50845923 | Msa0333220:CDS |
| GCGGAGGAAAGAGAGAGCGG+AGG | 0.645892 | 2_4:-50843490 | None:intergenic |
| CCTTCCAATAACCTCAGCGA+AGG | 0.647794 | 2_4:-50843754 | None:intergenic |
| AGTTAGGGTTAGGATCGTTG+AGG | 0.648596 | 2_4:-50843605 | None:intergenic |
| CCTTCGCTGAGGTTATTGGA+AGG | 0.652376 | 2_4:+50843754 | Msa0333220:CDS |
| GTGGTTGTGGAGAAGCCTGA+AGG | 0.665057 | 2_4:+50843690 | Msa0333220:CDS |
| GCACCATATCCACTGTTGGG+AGG | 0.668110 | 2_4:-50846125 | None:intergenic |
| ATATGATCCCAAGTATCATG+AGG | 0.674281 | 2_4:+50845734 | Msa0333220:CDS |
| CGACCTCCTCCTCCCAACAG+TGG | 0.676748 | 2_4:+50846116 | Msa0333220:CDS |
| TTACATCAAAACCTTCGCTG+AGG | 0.678193 | 2_4:+50843743 | Msa0333220:CDS |
| GGATACCCTCCCAACAACCA+AGG | 0.680141 | 2_4:+50845969 | Msa0333220:CDS |
| GGGGCAACAAAACCAGAACA+TGG | 0.684830 | 2_4:+50846166 | Msa0333220:CDS |
| TAGGGCGAGTGGAGAAAGCG+CGG | 0.697019 | 2_4:-50843572 | None:intergenic |
| TACCCTCCCAACAACCAAGG+CGG | 0.715418 | 2_4:+50845972 | Msa0333220:CDS |
| TACGCCCCTCCAAATCAAGG+CGG | 0.767202 | 2_4:+50846044 | Msa0333220:CDS |
| TACGCCCCTCCAAATCAAGG+CGG | 0.768249 | 2_4:+50846020 | Msa0333220:CDS |
| TATGCACCTCCAAATCAAGG+CGG | 0.782403 | 2_4:+50845996 | Msa0333220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAAATTTTCAATTTTTTT+AGG | + | chr2_4:50843874-50843893 | Msa0333220:intron | 10.0% |
| !!! | GTAAATTTTCAATTTTTTTA+GGG | + | chr2_4:50843875-50843894 | Msa0333220:intron | 10.0% |
| !!! | TTTAAAAAATAGTTAGTTTT+TGG | + | chr2_4:50844150-50844169 | Msa0333220:intron | 10.0% |
| !!! | TTAAAAAATAGTTAGTTTTT+GGG | + | chr2_4:50844151-50844170 | Msa0333220:intron | 10.0% |
| !! | TTCTCAAATATATTATATTA+TGG | - | chr2_4:50844228-50844247 | None:intergenic | 10.0% |
| !! | AAAAAAAAGTAATAGATATA+GGG | - | chr2_4:50844749-50844768 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTAATAGATAT+AGG | - | chr2_4:50844750-50844769 | None:intergenic | 10.0% |
| !! | ATGAAATGTAATGTAAATTA+GGG | - | chr2_4:50843337-50843356 | None:intergenic | 15.0% |
| !! | AATGAAATGTAATGTAAATT+AGG | - | chr2_4:50843338-50843357 | None:intergenic | 15.0% |
| !! | ACAATATAAACCTAAAAATA+CGG | - | chr2_4:50843844-50843863 | None:intergenic | 15.0% |
| !!! | TAAAAAATAGTTAGTTTTTG+GGG | + | chr2_4:50844152-50844171 | Msa0333220:intron | 15.0% |
| !! | TTATAAGAAATTATGGAAAA+TGG | + | chr2_4:50844200-50844219 | Msa0333220:intron | 15.0% |
| !! | TATAAGAAATTATGGAAAAT+GGG | + | chr2_4:50844201-50844220 | Msa0333220:intron | 15.0% |
| !!! | CTTTTATTATACTTAATTGT+AGG | - | chr2_4:50845277-50845296 | None:intergenic | 15.0% |
| !!! | TCTAAATAGCATTTTTTAAA+TGG | - | chr2_4:50845314-50845333 | None:intergenic | 15.0% |
| !! | TAATGTAAATTAGGGTTTAT+GGG | - | chr2_4:50843329-50843348 | None:intergenic | 20.0% |
| !!! | CTTTTTTATTCCGTATTTTT+AGG | + | chr2_4:50843831-50843850 | Msa0333220:intron | 20.0% |
| !!! | CTATTTTATTGAATTTGATG+TGG | + | chr2_4:50844033-50844052 | Msa0333220:intron | 20.0% |
| !!! | TAATTTTTCTGAATTTGATG+TGG | + | chr2_4:50844091-50844110 | Msa0333220:intron | 20.0% |
| !!! | AAAAAATAGTTAGTTTTTGG+GGG | + | chr2_4:50844153-50844172 | Msa0333220:intron | 20.0% |
| !! | TTGTGCATTATAAGAAATTA+TGG | + | chr2_4:50844193-50844212 | Msa0333220:intron | 20.0% |
| !! | AGAAATTGAATATGGAAAAT+GGG | + | chr2_4:50844277-50844296 | Msa0333220:intron | 20.0% |
| !! | AGAATACTATTATGTAAGAA+TGG | + | chr2_4:50844388-50844407 | Msa0333220:intron | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | - | chr2_4:50844549-50844568 | None:intergenic | 20.0% |
| !! | ACTCTGATTATTTATTTATG+TGG | + | chr2_4:50844855-50844874 | Msa0333220:intron | 20.0% |
| !! | TGATTATTTATTTATGTGGT+TGG | + | chr2_4:50844859-50844878 | Msa0333220:intron | 20.0% |
| !! | GACATAATGAATATAATTAG+AGG | - | chr2_4:50845187-50845206 | None:intergenic | 20.0% |
| !! | ATACATCAAACAACAAATAT+CGG | - | chr2_4:50845652-50845671 | None:intergenic | 20.0% |
| !! | ATTCATTACTTTATCTACAT+TGG | - | chr2_4:50846297-50846316 | None:intergenic | 20.0% |
| !! | ACATAATATAAATCATGTCT+CGG | - | chr2_4:50846325-50846344 | None:intergenic | 20.0% |
| !! | ATCTATAAAATCTCATTACA+TGG | - | chr2_4:50846351-50846370 | None:intergenic | 20.0% |
| ! | GTAATGTAAATTAGGGTTTA+TGG | - | chr2_4:50843330-50843349 | None:intergenic | 25.0% |
| !! | ATTGAATTTGATGTGGTTTT+AGG | + | chr2_4:50844040-50844059 | Msa0333220:intron | 25.0% |
| !!! | AAAAATAGTTAGTTTTTGGG+GGG | + | chr2_4:50844154-50844173 | Msa0333220:intron | 25.0% |
| ! | GCATTATGAGAAATTGAATA+TGG | + | chr2_4:50844269-50844288 | Msa0333220:intron | 25.0% |
| ! | GAGAAATTGAATATGGAAAA+TGG | + | chr2_4:50844276-50844295 | Msa0333220:intron | 25.0% |
| !! | GCTTATAAACAAAGTGATTT+TGG | + | chr2_4:50844434-50844453 | Msa0333220:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr2_4:50844653-50844672 | Msa0333220:intron | 25.0% |
| !!! | ATTGAGAATATTGATTCTGA+AGG | + | chr2_4:50844797-50844816 | Msa0333220:intron | 25.0% |
| !! | ACTGAAAGGTATATAATACA+TGG | + | chr2_4:50844988-50845007 | Msa0333220:intron | 25.0% |
| ! | TTCACATTCAAATAAGAATC+AGG | - | chr2_4:50845121-50845140 | None:intergenic | 25.0% |
| !! | TGATTCTTATTTGAATGTGA+AGG | + | chr2_4:50845120-50845139 | Msa0333220:CDS | 25.0% |
| ! | CATTCCTTATATATATACAC+AGG | - | chr2_4:50845240-50845259 | None:intergenic | 25.0% |
| ! | AAAACATCAGTATACTACAA+AGG | - | chr2_4:50845424-50845443 | None:intergenic | 25.0% |
| ! | CTATGAATTATAGCATTAGT+AGG | + | chr2_4:50845568-50845587 | Msa0333220:intron | 25.0% |
| ! | TCATATTTCTTGATGTAGAA+TGG | + | chr2_4:50845626-50845645 | Msa0333220:intron | 25.0% |
| !!! | AAGAAATTTTGAAAGGAGAA+GGG | + | chr2_4:50845830-50845849 | Msa0333220:CDS | 25.0% |
| !! | GATTTTATAGATCTTATGTC+TGG | + | chr2_4:50846359-50846378 | Msa0333220:three_prime_UTR | 25.0% |
| ACTATCAATAATCTCATCTC+TGG | - | chr2_4:50843724-50843743 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTAGGGTTTTCCAC+TGG | + | chr2_4:50843886-50843905 | Msa0333220:intron | 30.0% |
| !!! | TTTTTTTAGGGTTTTCCACT+GGG | + | chr2_4:50843887-50843906 | Msa0333220:intron | 30.0% |
| TGCTATTATGTGAGAATGAA+TGG | + | chr2_4:50843977-50843996 | Msa0333220:intron | 30.0% | |
| !!! | GAGAATGAATGGATTGTTTT+CGG | + | chr2_4:50843988-50844007 | Msa0333220:intron | 30.0% |
| ! | TCTGAATTTGATGTGGTTTT+AGG | + | chr2_4:50844098-50844117 | Msa0333220:intron | 30.0% |
| !!! | GTTTGGATAAGCATCTTTTT+TGG | + | chr2_4:50844461-50844480 | Msa0333220:intron | 30.0% |
| !! | AAAGTTTTGTGAGACTGTTT+GGG | - | chr2_4:50844712-50844731 | None:intergenic | 30.0% |
| !! | AAAAGTTTTGTGAGACTGTT+TGG | - | chr2_4:50844713-50844732 | None:intergenic | 30.0% |
| ! | CAAAACTTTTGTCAGTAGTT+AGG | + | chr2_4:50844723-50844742 | Msa0333220:intron | 30.0% |
| ! | TTGAATGAATGGTTGTCTTT+TGG | + | chr2_4:50844826-50844845 | Msa0333220:intron | 30.0% |
| AATGAATATAATTAGAGGCC+AGG | - | chr2_4:50845182-50845201 | None:intergenic | 30.0% | |
| GTCTCCTGTGTATATATATA+AGG | + | chr2_4:50845233-50845252 | Msa0333220:intron | 30.0% | |
| TAACCTTTGTGGTATACTAA+GGG | + | chr2_4:50845445-50845464 | Msa0333220:intron | 30.0% | |
| GTATAGTAACAGATGACAAT+TGG | - | chr2_4:50845500-50845519 | None:intergenic | 30.0% | |
| TGTCATCTGTTACTATACTT+TGG | + | chr2_4:50845502-50845521 | Msa0333220:intron | 30.0% | |
| TGAATTATAGCATTAGTAGG+TGG | + | chr2_4:50845571-50845590 | Msa0333220:intron | 30.0% | |
| GAATTATAGCATTAGTAGGT+GGG | + | chr2_4:50845572-50845591 | Msa0333220:intron | 30.0% | |
| AATTATAGCATTAGTAGGTG+GGG | + | chr2_4:50845573-50845592 | Msa0333220:intron | 30.0% | |
| ! | ACAGGTCAAGAAATTTTGAA+AGG | + | chr2_4:50845823-50845842 | Msa0333220:CDS | 30.0% |
| !! | CAAGAAATTTTGAAAGGAGA+AGG | + | chr2_4:50845829-50845848 | Msa0333220:CDS | 30.0% |
| ! | ATGATCCAGACAAATTCTTT+TGG | + | chr2_4:50846271-50846290 | Msa0333220:three_prime_UTR | 30.0% |
| TCAATAATCTCATCTCTGGT+AGG | - | chr2_4:50843720-50843739 | None:intergenic | 35.0% | |
| GAAAACAAGACTATTCTGTG+AGG | + | chr2_4:50844344-50844363 | Msa0333220:intron | 35.0% | |
| ATTCTGTGAGGATGAATGTA+TGG | + | chr2_4:50844356-50844375 | Msa0333220:intron | 35.0% | |
| !!! | AAAGTGATTTTGGCTCTGTT+TGG | + | chr2_4:50844444-50844463 | Msa0333220:intron | 35.0% |
| TTTACAGCTTATAGCACAAG+TGG | + | chr2_4:50844506-50844525 | Msa0333220:intron | 35.0% | |
| TTTACAGTGAAGAAGAAGCT+AGG | + | chr2_4:50844891-50844910 | Msa0333220:intron | 35.0% | |
| ! | ACTAGACACTACTTTGCTTT+TGG | + | chr2_4:50844935-50844954 | Msa0333220:CDS | 35.0% |
| AATGTGAAGGAGCAAGATTA+TGG | + | chr2_4:50845133-50845152 | Msa0333220:CDS | 35.0% | |
| !! | TTGAAGTGTTGCTTATACAG+AGG | + | chr2_4:50845376-50845395 | Msa0333220:intron | 35.0% |
| !! | TGAAGTGTTGCTTATACAGA+GGG | + | chr2_4:50845377-50845396 | Msa0333220:intron | 35.0% |
| ! | CTGATGTTTTGTAACCTTTG+TGG | + | chr2_4:50845434-50845453 | Msa0333220:intron | 35.0% |
| GTAACCTTTGTGGTATACTA+AGG | + | chr2_4:50845444-50845463 | Msa0333220:intron | 35.0% | |
| ! | ATTGGTAAAATGACTAGCCA+CGG | - | chr2_4:50845482-50845501 | None:intergenic | 35.0% |
| ATTATAGCATTAGTAGGTGG+GGG | + | chr2_4:50845574-50845593 | Msa0333220:intron | 35.0% | |
| !!! | TTTTTTGTTTCCCTCTCACT+AGG | + | chr2_4:50845681-50845700 | Msa0333220:intron | 35.0% |
| TCATGATACTTGGGATCATA+TGG | - | chr2_4:50845735-50845754 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | + | chr2_4:50845734-50845753 | Msa0333220:CDS | 35.0% | |
| TGCTCCTCAAAATAACTATC+CGG | + | chr2_4:50846145-50846164 | Msa0333220:CDS | 35.0% | |
| TTATTTGACCATCCAGCATT+TGG | - | chr2_4:50846203-50846222 | None:intergenic | 35.0% | |
| ATTGGCCAAAAGAATTTGTC+TGG | - | chr2_4:50846279-50846298 | None:intergenic | 35.0% | |
| CGCAAATTCATTAGGAAGAA+GGG | - | chr2_4:50846388-50846407 | None:intergenic | 35.0% | |
| ACGCAAATTCATTAGGAAGA+AGG | - | chr2_4:50846389-50846408 | None:intergenic | 35.0% | |
| TCCTAATGAATTTGCGTTTC+AGG | + | chr2_4:50846392-50846411 | Msa0333220:three_prime_UTR | 35.0% | |
| ACCTGAAACGCAAATTCATT+AGG | - | chr2_4:50846396-50846415 | None:intergenic | 35.0% | |
| GAAGAGAAGAGAGTGAGATT+GGG | - | chr2_4:50843361-50843380 | None:intergenic | 40.0% | |
| TGAAGAGAAGAGAGTGAGAT+TGG | - | chr2_4:50843362-50843381 | None:intergenic | 40.0% | |
| AGCAAAATCGTTTCCTTTGG+TGG | - | chr2_4:50843642-50843661 | None:intergenic | 40.0% | |
| TCGAGCAAAATCGTTTCCTT+TGG | - | chr2_4:50843645-50843664 | None:intergenic | 40.0% | |
| ! | AAGGAAACGATTTTGCTCGA+TGG | + | chr2_4:50843645-50843664 | Msa0333220:CDS | 40.0% |
| ! | ATGGATGCGATTTTGAACAC+TGG | + | chr2_4:50843664-50843683 | Msa0333220:CDS | 40.0% |
| TTACATCAAAACCTTCGCTG+AGG | + | chr2_4:50843743-50843762 | Msa0333220:CDS | 40.0% | |
| AAAACCTTCGCTGAGGTTAT+TGG | + | chr2_4:50843750-50843769 | Msa0333220:CDS | 40.0% | |
| AAAGAATTTCCTTCACCCAG+TGG | - | chr2_4:50843905-50843924 | None:intergenic | 40.0% | |
| TAATGCACAACAAACAGAGC+AGG | - | chr2_4:50844183-50844202 | None:intergenic | 40.0% | |
| !!! | GCATCTTTTTTGGCTCTGTT+TGG | + | chr2_4:50844471-50844490 | Msa0333220:intron | 40.0% |
| GCTGTTGTCATAAGCTATCT+TGG | + | chr2_4:50844619-50844638 | Msa0333220:intron | 40.0% | |
| GAAGGCTGTGTTTGAATGAA+TGG | + | chr2_4:50844815-50844834 | Msa0333220:intron | 40.0% | |
| GAGCTTTCGTACAAACTGAA+AGG | + | chr2_4:50844974-50844993 | Msa0333220:CDS | 40.0% | |
| AATACCCACAGCAAAGTCTT+GGG | - | chr2_4:50845339-50845358 | None:intergenic | 40.0% | |
| !! | GAAGTGTTGCTTATACAGAG+GGG | + | chr2_4:50845378-50845397 | Msa0333220:intron | 40.0% |
| !! | AAGTGTTGCTTATACAGAGG+GGG | + | chr2_4:50845379-50845398 | Msa0333220:intron | 40.0% |
| CAACCCTTAGTATACCACAA+AGG | - | chr2_4:50845451-50845470 | None:intergenic | 40.0% | |
| ! | TTGGTAAAATGACTAGCCAC+GGG | - | chr2_4:50845481-50845500 | None:intergenic | 40.0% |
| TAGGTGAGCCCTTCATTAAT+GGG | + | chr2_4:50845700-50845719 | Msa0333220:intron | 40.0% | |
| ACTGCTTGCCCATTAATGAA+GGG | - | chr2_4:50845711-50845730 | None:intergenic | 40.0% | |
| AACTGCTTGCCCATTAATGA+AGG | - | chr2_4:50845712-50845731 | None:intergenic | 40.0% | |
| ACAATGCTCGTGCTAATGAA+AGG | + | chr2_4:50845769-50845788 | Msa0333220:CDS | 40.0% | |
| TGAAAGGAGAAGGGAAAATG+TGG | + | chr2_4:50845839-50845858 | Msa0333220:CDS | 40.0% | |
| GCTCCTCAAAATAACTATCC+GGG | + | chr2_4:50846146-50846165 | Msa0333220:CDS | 40.0% | |
| CTCCTCAAAATAACTATCCG+GGG | + | chr2_4:50846147-50846166 | Msa0333220:CDS | 40.0% | |
| AACAAAACCAGAACATGGCA+GGG | + | chr2_4:50846171-50846190 | Msa0333220:CDS | 40.0% | |
| ! | TGGTTAGGGTTAGGGTTTTG+GGG | - | chr2_4:50843425-50843444 | None:intergenic | 45.0% |
| ! | GTGGTTAGGGTTAGGGTTTT+GGG | - | chr2_4:50843426-50843445 | None:intergenic | 45.0% |
| GTTAGGGTTAGGATCGTTGA+GGG | - | chr2_4:50843607-50843626 | None:intergenic | 45.0% | |
| AGTTAGGGTTAGGATCGTTG+AGG | - | chr2_4:50843608-50843627 | None:intergenic | 45.0% | |
| TCAACGATCCTAACCCTAAC+TGG | + | chr2_4:50843607-50843626 | Msa0333220:CDS | 45.0% | |
| CAACGATCCTAACCCTAACT+GGG | + | chr2_4:50843608-50843627 | Msa0333220:CDS | 45.0% | |
| !!! | CGATTTTGAACACTGGCTTG+TGG | + | chr2_4:50843671-50843690 | Msa0333220:CDS | 45.0% |
| GTGAAGGAGCAAGATTATGG+AGG | + | chr2_4:50845136-50845155 | Msa0333220:CDS | 45.0% | |
| ATAATTAGAGGCCAGGTGAC+AGG | - | chr2_4:50845175-50845194 | None:intergenic | 45.0% | |
| AGATACCCAAGACTTTGCTG+TGG | + | chr2_4:50845331-50845350 | Msa0333220:intron | 45.0% | |
| ! | GATACCCAAGACTTTGCTGT+GGG | + | chr2_4:50845332-50845351 | Msa0333220:intron | 45.0% |
| GAATACCCACAGCAAAGTCT+TGG | - | chr2_4:50845340-50845359 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTATACAGAGGG+GGG | + | chr2_4:50845380-50845399 | Msa0333220:intron | 45.0% |
| CTAGGTGAGCCCTTCATTAA+TGG | + | chr2_4:50845699-50845718 | Msa0333220:intron | 45.0% | |
| ATCCCAAGTATCATGAGGAG+TGG | + | chr2_4:50845739-50845758 | Msa0333220:CDS | 45.0% | |
| TCCCAAGTATCATGAGGAGT+GGG | + | chr2_4:50845740-50845759 | Msa0333220:CDS | 45.0% | |
| ACCCACTCCTCATGATACTT+GGG | - | chr2_4:50845744-50845763 | None:intergenic | 45.0% | |
| AACCCACTCCTCATGATACT+TGG | - | chr2_4:50845745-50845764 | None:intergenic | 45.0% | |
| CTCGTGCTAATGAAAGGAAC+AGG | + | chr2_4:50845775-50845794 | Msa0333220:CDS | 45.0% | |
| AAAGGAACAGGCGCAATGAT+AGG | + | chr2_4:50845787-50845806 | Msa0333220:CDS | 45.0% | |
| ATAGGCCTCGTAATAACGAC+AGG | + | chr2_4:50845805-50845824 | Msa0333220:CDS | 45.0% | |
| CTTGACCTGTCGTTATTACG+AGG | - | chr2_4:50845813-50845832 | None:intergenic | 45.0% | |
| TGAACCGAGACATGCAAAGT+AGG | + | chr2_4:50845862-50845881 | Msa0333220:CDS | 45.0% | |
| ! | TTGGGAGGGTAAGCATTGTT+TGG | - | chr2_4:50845915-50845934 | None:intergenic | 45.0% |
| GGATATGCACCTCCAAATCA+AGG | + | chr2_4:50845993-50846012 | Msa0333220:CDS | 45.0% | |
| TATGCACCTCCAAATCAAGG+CGG | + | chr2_4:50845996-50846015 | Msa0333220:CDS | 45.0% | |
| !! | TGCCCCGGATAGTTATTTTG+AGG | - | chr2_4:50846152-50846171 | None:intergenic | 45.0% |
| !!! | ATGTTCTGGTTTTGTTGCCC+CGG | - | chr2_4:50846167-50846186 | None:intergenic | 45.0% |
| CAACAAAACCAGAACATGGC+AGG | + | chr2_4:50846170-50846189 | Msa0333220:CDS | 45.0% | |
| TTTGACCATCCAGCATTTGG+AGG | - | chr2_4:50846200-50846219 | None:intergenic | 45.0% | |
| AAGCAGTGTCTCTTCCAAAC+AGG | - | chr2_4:50846241-50846260 | None:intergenic | 45.0% | |
| !!! | TAAAAAAGTAAATTTAATTT+TGG | - | chr2_4:50843819-50843838 | None:intergenic | 5.0% |
| !!! | TTATAAAAAATGTTTTTTTT+TGG | + | chr2_4:50843944-50843963 | Msa0333220:intron | 5.0% |
| TCTCTTCACACACACTGCGA+TGG | + | chr2_4:50843374-50843393 | Msa0333220:exon | 50.0% | |
| ! | GGTGGTTAGGGTTAGGGTTT+TGG | - | chr2_4:50843427-50843446 | None:intergenic | 50.0% |
| GAGGAAGGTGGTTAGGGTTA+GGG | - | chr2_4:50843433-50843452 | None:intergenic | 50.0% | |
| AGAGGAAGGTGGTTAGGGTT+AGG | - | chr2_4:50843434-50843453 | None:intergenic | 50.0% | |
| AAAGAGAGAGCGGAGGATGA+GGG | - | chr2_4:50843486-50843505 | None:intergenic | 50.0% | |
| GTTAGGATCGTTGAGGGAAG+AGG | - | chr2_4:50843601-50843620 | None:intergenic | 50.0% | |
| ! | CGTTTCCTTTGGTGGACGAT+TGG | - | chr2_4:50843634-50843653 | None:intergenic | 50.0% |
| !! | TGAACACTGGCTTGTGGTTG+TGG | + | chr2_4:50843677-50843696 | Msa0333220:CDS | 50.0% |
| TCTCTGGTAGGATCACCTTC+AGG | - | chr2_4:50843708-50843727 | None:intergenic | 50.0% | |
| CCTTCCAATAACCTCAGCGA+AGG | - | chr2_4:50843757-50843776 | None:intergenic | 50.0% | |
| CCTTCGCTGAGGTTATTGGA+AGG | + | chr2_4:50843754-50843773 | Msa0333220:CDS | 50.0% | |
| ! | TAGGGTTTTCCACTGGGTGA+AGG | + | chr2_4:50843893-50843912 | Msa0333220:intron | 50.0% |
| TCCAATTGCAGAACTGCCCA+AGG | + | chr2_4:50845081-50845100 | Msa0333220:intron | 50.0% | |
| ACCTTGGGCAGTTCTGCAAT+TGG | - | chr2_4:50845085-50845104 | None:intergenic | 50.0% | |
| AGAACTGCCCAAGGTTCGAT+GGG | + | chr2_4:50845090-50845109 | Msa0333220:intron | 50.0% | |
| GGAAGAACCCATCGAACCTT+GGG | - | chr2_4:50845100-50845119 | None:intergenic | 50.0% | |
| AGGAAGAACCCATCGAACCT+TGG | - | chr2_4:50845101-50845120 | None:intergenic | 50.0% | |
| CTTATACAGAGGGGGGTGAA+TGG | + | chr2_4:50845387-50845406 | Msa0333220:intron | 50.0% | |
| TAAGGGTTGAAGTTCACCCG+TGG | + | chr2_4:50845462-50845481 | Msa0333220:intron | 50.0% | |
| GAGGCCTACTTTGCATGTCT+CGG | - | chr2_4:50845869-50845888 | None:intergenic | 50.0% | |
| ! | GGGTAAGCATTGTTTGGAGG+TGG | - | chr2_4:50845909-50845928 | None:intergenic | 50.0% |
| ! | GGAGGGTAAGCATTGTTTGG+AGG | - | chr2_4:50845912-50845931 | None:intergenic | 50.0% |
| TTACCCTCCCAACAATGCTG+CGG | + | chr2_4:50845923-50845942 | Msa0333220:CDS | 50.0% | |
| ATCCACCAGCATTGTTGGGA+GGG | - | chr2_4:50845953-50845972 | None:intergenic | 50.0% | |
| TATCCACCAGCATTGTTGGG+AGG | - | chr2_4:50845954-50845973 | None:intergenic | 50.0% | |
| GGGTATCCACCAGCATTGTT+GGG | - | chr2_4:50845957-50845976 | None:intergenic | 50.0% | |
| ! | AGGGTATCCACCAGCATTGT+TGG | - | chr2_4:50845958-50845977 | None:intergenic | 50.0% |
| GCATATCCGCCTTGGTTGTT+GGG | - | chr2_4:50845981-50846000 | None:intergenic | 50.0% | |
| TGCATATCCGCCTTGGTTGT+TGG | - | chr2_4:50845982-50846001 | None:intergenic | 50.0% | |
| !! | GTATCCGCCTTGATTTGGAG+GGG | - | chr2_4:50846003-50846022 | None:intergenic | 50.0% |
| !! | CGTATCCGCCTTGATTTGGA+GGG | - | chr2_4:50846004-50846023 | None:intergenic | 50.0% |
| !! | ATCCACCGCCTTGATTTGGA+GGG | - | chr2_4:50846052-50846071 | None:intergenic | 50.0% |
| !! | TATCCACCGCCTTGATTTGG+AGG | - | chr2_4:50846053-50846072 | None:intergenic | 50.0% |
| ! | GGAGCACCATATCCACTGTT+GGG | - | chr2_4:50846131-50846150 | None:intergenic | 50.0% |
| !! | AGGAGCACCATATCCACTGT+TGG | - | chr2_4:50846132-50846151 | None:intergenic | 50.0% |
| GGGGCAACAAAACCAGAACA+TGG | + | chr2_4:50846166-50846185 | Msa0333220:CDS | 50.0% | |
| CAGTAGACTCCTGACCTGTT+TGG | + | chr2_4:50846224-50846243 | Msa0333220:exon | 50.0% | |
| GTGTCTCTTCCAAACAGGTC+AGG | - | chr2_4:50846236-50846255 | None:intergenic | 50.0% | |
| GGAGAACGCGAGAGAAGATC+TGG | - | chr2_4:50843404-50843423 | None:intergenic | 55.0% | |
| GCGAGAGAGGAAGGTGGTTA+GGG | - | chr2_4:50843439-50843458 | None:intergenic | 55.0% | |
| AGCGAGAGAGGAAGGTGGTT+AGG | - | chr2_4:50843440-50843459 | None:intergenic | 55.0% | |
| ! | AGTGGTGGTTGTGGTGGAGA+TGG | - | chr2_4:50843463-50843482 | None:intergenic | 55.0% |
| GAAAGAGAGAGCGGAGGATG+AGG | - | chr2_4:50843487-50843506 | None:intergenic | 55.0% | |
| AGGAAGGGAGGAGGATGTGA+CGG | - | chr2_4:50843551-50843570 | None:intergenic | 55.0% | |
| ! | TGGAGAAAGCGCGGAAGGAA+GGG | - | chr2_4:50843566-50843585 | None:intergenic | 55.0% |
| CGTTGAGGGAAGAGGTGGTA+GGG | - | chr2_4:50843593-50843612 | None:intergenic | 55.0% | |
| TCGTTGAGGGAAGAGGTGGT+AGG | - | chr2_4:50843594-50843613 | None:intergenic | 55.0% | |
| AGGATCGTTGAGGGAAGAGG+TGG | - | chr2_4:50843598-50843617 | None:intergenic | 55.0% | |
| ! | CGATTGGCCCAGTTAGGGTT+AGG | - | chr2_4:50843618-50843637 | None:intergenic | 55.0% |
| ! | GTGGACGATTGGCCCAGTTA+GGG | - | chr2_4:50843623-50843642 | None:intergenic | 55.0% |
| GTGGTTGTGGAGAAGCCTGA+AGG | + | chr2_4:50843690-50843709 | Msa0333220:CDS | 55.0% | |
| CAGAACTGCCCAAGGTTCGA+TGG | + | chr2_4:50845089-50845108 | Msa0333220:intron | 55.0% | |
| GAAGGGCTCACCTAGTGAGA+GGG | - | chr2_4:50845694-50845713 | None:intergenic | 55.0% | |
| TGAAGGGCTCACCTAGTGAG+AGG | - | chr2_4:50845695-50845714 | None:intergenic | 55.0% | |
| AGGCCTCCAGTGCAGAATTC+TGG | + | chr2_4:50845882-50845901 | Msa0333220:CDS | 55.0% | |
| GGACCAGAATTCTGCACTGG+AGG | - | chr2_4:50845888-50845907 | None:intergenic | 55.0% | |
| GGTGGACCAGAATTCTGCAC+TGG | - | chr2_4:50845891-50845910 | None:intergenic | 55.0% | |
| TACCCTCCCAACAATGCTGC+GGG | + | chr2_4:50845924-50845943 | Msa0333220:CDS | 55.0% | |
| ATCCCGCAGCATTGTTGGGA+GGG | - | chr2_4:50845929-50845948 | None:intergenic | 55.0% | |
| TATCCCGCAGCATTGTTGGG+AGG | - | chr2_4:50845930-50845949 | None:intergenic | 55.0% | |
| GGGTATCCCGCAGCATTGTT+GGG | - | chr2_4:50845933-50845952 | None:intergenic | 55.0% | |
| ! | AGGGTATCCCGCAGCATTGT+TGG | - | chr2_4:50845934-50845953 | None:intergenic | 55.0% |
| GGATACCCTCCCAACAATGC+TGG | + | chr2_4:50845945-50845964 | Msa0333220:CDS | 55.0% | |
| TACCCTCCCAACAATGCTGG+TGG | + | chr2_4:50845948-50845967 | Msa0333220:CDS | 55.0% | |
| GGATACCCTCCCAACAACCA+AGG | + | chr2_4:50845969-50845988 | Msa0333220:CDS | 55.0% | |
| TACCCTCCCAACAACCAAGG+CGG | + | chr2_4:50845972-50845991 | Msa0333220:CDS | 55.0% | |
| ATCCGCCTTGGTTGTTGGGA+GGG | - | chr2_4:50845977-50845996 | None:intergenic | 55.0% | |
| TATCCGCCTTGGTTGTTGGG+AGG | - | chr2_4:50845978-50845997 | None:intergenic | 55.0% | |
| ! | TTGGAGGTGCATATCCGCCT+TGG | - | chr2_4:50845989-50846008 | None:intergenic | 55.0% |
| !! | GCGTATCCGCCTTGATTTGG+AGG | - | chr2_4:50846005-50846024 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | + | chr2_4:50846017-50846036 | Msa0333220:CDS | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | + | chr2_4:50846020-50846039 | Msa0333220:CDS | 55.0% | |
| !! | GCGTATCCGCCTTGATTTGG+AGG | - | chr2_4:50846005-50846024 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | + | chr2_4:50846017-50846036 | Msa0333220:CDS | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | + | chr2_4:50846020-50846039 | Msa0333220:CDS | 55.0% | |
| !! | TCCACCGCCTTGATTTGGAG+GGG | - | chr2_4:50846051-50846070 | None:intergenic | 55.0% |
| GGGTATCCACCGCCTTGATT+TGG | - | chr2_4:50846056-50846075 | None:intergenic | 55.0% | |
| TATCCACTGTTGGGAGGAGG+AGG | - | chr2_4:50846122-50846141 | None:intergenic | 55.0% | |
| CCATATCCACTGTTGGGAGG+AGG | - | chr2_4:50846125-50846144 | None:intergenic | 55.0% | |
| CCTCCTCCCAACAGTGGATA+TGG | + | chr2_4:50846122-50846141 | Msa0333220:CDS | 55.0% | |
| GCACCATATCCACTGTTGGG+AGG | - | chr2_4:50846128-50846147 | None:intergenic | 55.0% | |
| GGATGCCTCCAAATGCTGGA+TGG | + | chr2_4:50846192-50846211 | Msa0333220:CDS | 55.0% | |
| GATGGAGCGAGAGAGGAAGG+TGG | - | chr2_4:50843445-50843464 | None:intergenic | 60.0% | |
| GGAGATGGAGCGAGAGAGGA+AGG | - | chr2_4:50843448-50843467 | None:intergenic | 60.0% | |
| TGGTGGAGATGGAGCGAGAG+AGG | - | chr2_4:50843452-50843471 | None:intergenic | 60.0% | |
| TGAGGGAGTGGTGGTTGTGG+TGG | - | chr2_4:50843469-50843488 | None:intergenic | 60.0% | |
| GGATGAGGGAGTGGTGGTTG+TGG | - | chr2_4:50843472-50843491 | None:intergenic | 60.0% | |
| ACGGCGGAGGAAAGAGAGAG+CGG | - | chr2_4:50843496-50843515 | None:intergenic | 60.0% | |
| ! | GATGTGACGGGAGGTGATGG+CGG | - | chr2_4:50843538-50843557 | None:intergenic | 60.0% |
| ! | GAGGATGTGACGGGAGGTGA+TGG | - | chr2_4:50843541-50843560 | None:intergenic | 60.0% |
| GGAAGGGAGGAGGATGTGAC+GGG | - | chr2_4:50843550-50843569 | None:intergenic | 60.0% | |
| ! | AGAAAGCGCGGAAGGAAGGG+AGG | - | chr2_4:50843563-50843582 | None:intergenic | 60.0% |
| ! | GTGGAGAAAGCGCGGAAGGA+AGG | - | chr2_4:50843567-50843586 | None:intergenic | 60.0% |
| TAGGGCGAGTGGAGAAAGCG+CGG | - | chr2_4:50843575-50843594 | None:intergenic | 60.0% | |
| ! | GGTGGACGATTGGCCCAGTT+AGG | - | chr2_4:50843624-50843643 | None:intergenic | 60.0% |
| CTGGGCCAATCGTCCACCAA+AGG | + | chr2_4:50843626-50843645 | Msa0333220:CDS | 60.0% | |
| AGCTCTGCTGTCCTGTCACC+TGG | + | chr2_4:50845161-50845180 | Msa0333220:intron | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | - | chr2_4:50846008-50846027 | None:intergenic | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | - | chr2_4:50846008-50846027 | None:intergenic | 60.0% | |
| TACCCTCCCCCCAACATGAG+CGG | + | chr2_4:50846071-50846090 | Msa0333220:CDS | 60.0% | |
| AGGAGGTCCGCTCATGTTGG+GGG | - | chr2_4:50846081-50846100 | None:intergenic | 60.0% | |
| GAGGAGGTCCGCTCATGTTG+GGG | - | chr2_4:50846082-50846101 | None:intergenic | 60.0% | |
| GGAGGAGGTCCGCTCATGTT+GGG | - | chr2_4:50846083-50846102 | None:intergenic | 60.0% | |
| AGGAGGAGGTCCGCTCATGT+TGG | - | chr2_4:50846084-50846103 | None:intergenic | 60.0% | |
| CGGCTCATGTTAGGAGGAGG+AGG | - | chr2_4:50846098-50846117 | None:intergenic | 60.0% | |
| ! | GGTCGGCTCATGTTAGGAGG+AGG | - | chr2_4:50846101-50846120 | None:intergenic | 60.0% |
| ! | GGAGGTCGGCTCATGTTAGG+AGG | - | chr2_4:50846104-50846123 | None:intergenic | 60.0% |
| ! | GGAGGAGGTCGGCTCATGTT+AGG | - | chr2_4:50846107-50846126 | None:intergenic | 60.0% |
| CACTGTTGGGAGGAGGAGGT+CGG | - | chr2_4:50846118-50846137 | None:intergenic | 60.0% | |
| ! | GAGGCATCCCTGCCATGTTC+TGG | - | chr2_4:50846181-50846200 | None:intergenic | 60.0% |
| GCAGGGATGCCTCCAAATGC+TGG | + | chr2_4:50846188-50846207 | Msa0333220:CDS | 60.0% | |
| AGCGGAGGATGAGGGAGTGG+TGG | - | chr2_4:50843478-50843497 | None:intergenic | 65.0% | |
| GAGAGCGGAGGATGAGGGAG+TGG | - | chr2_4:50843481-50843500 | None:intergenic | 65.0% | |
| GCGGAGGAAAGAGAGAGCGG+AGG | - | chr2_4:50843493-50843512 | None:intergenic | 65.0% | |
| AAAGAGGACGGAGACGGCGG+AGG | - | chr2_4:50843509-50843528 | None:intergenic | 65.0% | |
| CGGAAAGAGGACGGAGACGG+CGG | - | chr2_4:50843512-50843531 | None:intergenic | 65.0% | |
| CGGCGGAAAGAGGACGGAGA+CGG | - | chr2_4:50843515-50843534 | None:intergenic | 65.0% | |
| ! | AGGGAGGAGGATGTGACGGG+AGG | - | chr2_4:50843547-50843566 | None:intergenic | 65.0% |
| AAGCGCGGAAGGAAGGGAGG+AGG | - | chr2_4:50843560-50843579 | None:intergenic | 65.0% | |
| ! | GCGAGTGGAGAAAGCGCGGA+AGG | - | chr2_4:50843571-50843590 | None:intergenic | 65.0% |
| GGAAGAGGTGGTAGGGCGAG+TGG | - | chr2_4:50843586-50843605 | None:intergenic | 65.0% | |
| GCCCCTCCAAATCAAGGCGG+TGG | + | chr2_4:50846023-50846042 | Msa0333220:CDS | 65.0% | |
| GTCCGCTCATGTTGGGGGGA+GGG | - | chr2_4:50846076-50846095 | None:intergenic | 65.0% | |
| GGAGGTCCGCTCATGTTGGG+GGG | - | chr2_4:50846080-50846099 | None:intergenic | 65.0% | |
| CGACCTCCTCCTCCCAACAG+TGG | + | chr2_4:50846116-50846135 | Msa0333220:CDS | 65.0% | |
| TGGCGGCGGCGGAAAGAGGA+CGG | - | chr2_4:50843521-50843540 | None:intergenic | 70.0% | |
| !! | GTGATGGCGGCGGCGGAAAG+AGG | - | chr2_4:50843525-50843544 | None:intergenic | 70.0% |
| !! | GTGACGGGAGGTGATGGCGG+CGG | - | chr2_4:50843535-50843554 | None:intergenic | 70.0% |
| GGTCCGCTCATGTTGGGGGG+AGG | - | chr2_4:50846077-50846096 | None:intergenic | 70.0% | |
| !! | ACGGGAGGTGATGGCGGCGG+CGG | - | chr2_4:50843532-50843551 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 50843322 | 50846520 | 50843322 | ID=Msa0333220;Name=Msa0333220 |
| chr2_4 | mRNA | 50843322 | 50846520 | 50843322 | ID=Msa0333220-mRNA-1;Parent=Msa0333220;Name=Msa0333220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=71|1|1|1|1|1|4|291|357 |
| chr2_4 | exon | 50843322 | 50843775 | 50843322 | ID=Msa0333220-mRNA-1:exon:15147;Parent=Msa0333220-mRNA-1 |
| chr2_4 | exon | 50844898 | 50844995 | 50844898 | ID=Msa0333220-mRNA-1:exon:15148;Parent=Msa0333220-mRNA-1 |
| chr2_4 | exon | 50845092 | 50845157 | 50845092 | ID=Msa0333220-mRNA-1:exon:15149;Parent=Msa0333220-mRNA-1 |
| chr2_4 | exon | 50845703 | 50846520 | 50845703 | ID=Msa0333220-mRNA-1:exon:15150;Parent=Msa0333220-mRNA-1 |
| chr2_4 | five_prime_UTR | 50843322 | 50843392 | 50843322 | ID=Msa0333220-mRNA-1:five_prime_utr;Parent=Msa0333220-mRNA-1 |
| chr2_4 | CDS | 50843393 | 50843775 | 50843393 | ID=Msa0333220-mRNA-1:cds;Parent=Msa0333220-mRNA-1 |
| chr2_4 | CDS | 50844898 | 50844995 | 50844898 | ID=Msa0333220-mRNA-1:cds;Parent=Msa0333220-mRNA-1 |
| chr2_4 | CDS | 50845092 | 50845157 | 50845092 | ID=Msa0333220-mRNA-1:cds;Parent=Msa0333220-mRNA-1 |
| chr2_4 | CDS | 50845703 | 50846229 | 50845703 | ID=Msa0333220-mRNA-1:cds;Parent=Msa0333220-mRNA-1 |
| chr2_4 | three_prime_UTR | 50846230 | 50846520 | 50846230 | ID=Msa0333220-mRNA-1:three_prime_utr;Parent=Msa0333220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
