AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227550 MtrunA17_Chr2g0316331 96.581 234 8 0 40 273 216 449 6.75e-172 482
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227550 AT5G20040.1 56.957 230 97 1 40 269 220 447 1.57e-92 281
Msa0227550 AT5G20040.3 55.508 236 97 2 40 269 220 453 7.11e-90 275
Msa0227550 AT5G20040.2 55.652 230 96 2 40 269 220 443 6.67e-88 269

Find 126 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATTGTTATCCTATTT+TGG 0.138618 2_1:+78818055 Msa0227550:CDS
GCTTGAATTAGCTACATATT+TGG 0.174201 2_1:+78818132 Msa0227550:three_prime_UTR
GGATACCATATGATTCTTTC+AGG 0.190617 2_1:+78815503 Msa0227550:CDS
CAGGCCATGGATTACTTAAT+AGG 0.213819 2_1:+78816560 Msa0227550:intron
AGGATCCTGGTTTGCGTAAA+AGG 0.239175 2_1:-78818333 None:intergenic
CTCCGCTCTCTTACAATTTC+CGG 0.242499 2_1:+78813085 Msa0227550:five_prime_UTR
AGGAGTATTGCAGGTTAAAT+AGG 0.255838 2_1:+78818163 Msa0227550:three_prime_UTR
GAGAAGGTGATAGTTATTTC+TGG 0.257660 2_1:+78813150 Msa0227550:five_prime_UTR
ATATTACTCTAGATAATAAT+TGG 0.265851 2_1:-78812942 None:intergenic
AGCGGAGTTGCTCGGAAAAT+TGG 0.275218 2_1:-78813069 None:intergenic
ACTCCGTTGTTCATCATCTT+TGG 0.296832 2_1:-78813009 None:intergenic
TAAAATACAAGGTTCATATA+TGG 0.298492 2_1:+78814893 Msa0227550:intron
CTACATATTTGGAATTATAA+AGG 0.302459 2_1:+78818143 Msa0227550:three_prime_UTR
AGGCTTACCGCACCAGAAAT+AGG 0.314218 2_1:+78817931 Msa0227550:CDS
TTCTGTATCCATTCCAAAAT+AGG 0.315245 2_1:-78818068 None:intergenic
GTCGTGTTCCGATTGTTGTT+GGG 0.316625 2_1:+78814282 Msa0227550:five_prime_UTR
CGGTGTGAAGATATGATATT+AGG 0.344759 2_1:+78815685 Msa0227550:CDS
TAATATCTCTCGACATTCTA+AGG 0.349282 2_1:-78817881 None:intergenic
ATATGATTCTTTCAGGGAAC+AGG 0.349378 2_1:+78815510 Msa0227550:CDS
ATTTCTGGACCCACCGGTTC+CGG 0.350702 2_1:+78813165 Msa0227550:five_prime_UTR
GCTCGGAAAATTGGATGTTC+CGG 0.352035 2_1:-78813060 None:intergenic
GGTCGTGTTCCGATTGTTGT+TGG 0.354013 2_1:+78814281 Msa0227550:five_prime_UTR
ACTGCTATATGTTGGACCTT+TGG 0.358311 2_1:-78815037 None:intergenic
TGTTAGTGCCGATTCTGTTC+AGG 0.360188 2_1:+78813236 Msa0227550:five_prime_UTR
GAATTATAAAGGAGTATTGC+AGG 0.361214 2_1:+78818154 Msa0227550:three_prime_UTR
TTTCAAAAGATATAAATATA+TGG 0.365418 2_1:-78815446 None:intergenic
GATAACATCTCAAGCTTGTA+TGG 0.369477 2_1:+78814946 Msa0227550:five_prime_UTR
CTCGGAAAATTGGATGTTCC+GGG 0.370881 2_1:-78813059 None:intergenic
TGAATGATTGGTACCGATTA+CGG 0.374646 2_1:+78815059 Msa0227550:five_prime_UTR
CTCGACATTCTAAGGTGTTC+GGG 0.375668 2_1:-78817873 None:intergenic
TCTAGATAATAATTGGATAA+AGG 0.378778 2_1:-78812935 None:intergenic
ACTAACCTTTACCAAAAGAT+TGG 0.381185 2_1:+78815164 Msa0227550:five_prime_UTR
TCTCTAGACTACGCCGTAAT+CGG 0.385182 2_1:-78815072 None:intergenic
TATTTATCAGATTATTCTGT+TGG 0.385240 2_1:+78814209 Msa0227550:intron
TTTGTTGGAGAGTTGGAGTT+TGG 0.386503 2_1:-78815936 None:intergenic
GTAGTCTAACTTTGCTGAAT+CGG 0.387153 2_1:-78815602 None:intergenic
TTTCGTCACTGCATCATTAA+CGG 0.390206 2_1:+78813116 Msa0227550:five_prime_UTR
GCAGAGGCTTTAGGCACATC+TGG 0.392567 2_1:-78814920 None:intergenic
TCTACAAATCAATTGATTAT+CGG 0.397595 2_1:+78815665 Msa0227550:CDS
GTTATCTCTGCAGAGGCTTT+AGG 0.398015 2_1:-78814929 None:intergenic
TCTCGACATTCTAAGGTGTT+CGG 0.404470 2_1:-78817874 None:intergenic
CCGCACGTGCCTCCGCCTCC+CGG 0.415823 2_1:+78813041 Msa0227550:five_prime_UTR
AACATATAGCAGTGAATGAT+TGG 0.419947 2_1:+78815047 Msa0227550:five_prime_UTR
GCCTTCTGTCTGAGGCTCAA+TGG 0.420564 2_1:+78815892 Msa0227550:CDS
GCGTAGTCTAGAGATTATTA+AGG 0.424856 2_1:+78815081 Msa0227550:five_prime_UTR
AACTCTCCAACAAAAGCAAT+TGG 0.427647 2_1:+78815945 Msa0227550:CDS
TTAGGAAGTGCCGCATCATC+TGG 0.429156 2_1:+78814034 Msa0227550:intron
TCTTTGATTGCAGGAGGGGA+TGG 0.439720 2_1:+78815870 Msa0227550:intron
GTATGTATATGTGGAATGTA+TGG 0.442418 2_1:+78815381 Msa0227550:CDS
GCTCAATGGCTTATTGATAT+CGG 0.444199 2_1:+78815906 Msa0227550:CDS
CATTGCGAGACGGCTCTTAC+CGG 0.451232 2_1:-78813184 None:intergenic
ATGAGAAAGACAGGCAAGAA+TGG 0.457909 2_1:-78815217 None:intergenic
ACCTTTCTATCATTTAATGA+AGG 0.458751 2_1:-78813821 None:intergenic
GAACTCGCTAAACGCCTCAA+TGG 0.461709 2_1:+78813207 Msa0227550:five_prime_UTR
AAAGATTTCCATTCTGATTG+TGG 0.464882 2_1:-78817845 None:intergenic
GATACCATATGATTCTTTCA+GGG 0.466118 2_1:+78815504 Msa0227550:CDS
TCGCGAAACGACAGTTGACT+TGG 0.470955 2_1:+78817281 Msa0227550:CDS
AAATTGGATGTTCCGGGAGG+CGG 0.480885 2_1:-78813053 None:intergenic
AATACCTCTAAGTTCTTGAC+TGG 0.482470 2_1:+78815139 Msa0227550:five_prime_UTR
TCGTGTTCCGATTGTTGTTG+GGG 0.487543 2_1:+78814283 Msa0227550:five_prime_UTR
GGTCAAGTCTGTCGCTAGAA+AGG 0.487687 2_1:-78815642 None:intergenic
TTGGATGTTCCGGGAGGCGG+AGG 0.491724 2_1:-78813050 None:intergenic
GTATCCAGTCAAGAACTTAG+AGG 0.492473 2_1:-78815143 None:intergenic
CACTAACAATTTCGCCATTG+AGG 0.492621 2_1:-78813221 None:intergenic
TCTACATAAAAGTCAACAAA+AGG 0.498727 2_1:-78818219 None:intergenic
AATTCATACCTGAACAGAAT+CGG 0.498815 2_1:-78813244 None:intergenic
AGGGGATGGCCTTCTGTCTG+AGG 0.502583 2_1:+78815884 Msa0227550:CDS
ATTTATCAGATTATTCTGTT+GGG 0.508010 2_1:+78814210 Msa0227550:intron
ATAATGAAAATGAGAAAGAC+AGG 0.512030 2_1:-78815226 None:intergenic
TATGATGACATCAAGGATCC+TGG 0.512314 2_1:-78818346 None:intergenic
TCGAATAGCTGCTAAACTAA+AGG 0.513714 2_1:+78817911 Msa0227550:CDS
GCCTTCATTAAATGATAGAA+AGG 0.513937 2_1:+78813820 Msa0227550:five_prime_UTR
ATATATTTCAGAAAATTCAA+TGG 0.514366 2_1:-78815413 None:intergenic
GTAATGAACATATTTACCAT+TGG 0.516604 2_1:+78817308 Msa0227550:CDS
ACGGCTCTTACCGGAACCGG+TGG 0.523860 2_1:-78813175 None:intergenic
TGTTCCCTGAAAGAATCATA+TGG 0.526900 2_1:-78815508 None:intergenic
TACAGAAGACTCAGAAGTGA+AGG 0.532598 2_1:+78818084 Msa0227550:CDS
AATCATTCACTGCTATATGT+TGG 0.534947 2_1:-78815045 None:intergenic
AAGACTCAGAAGTGAAGGGA+TGG 0.547384 2_1:+78818089 Msa0227550:exon
GATGCATACCACAATCAGAA+TGG 0.547399 2_1:+78817837 Msa0227550:CDS
GAGACGGCTCTTACCGGAAC+CGG 0.549004 2_1:-78813178 None:intergenic
TGTAAGAGAGCGGAGTTGCT+CGG 0.549418 2_1:-78813077 None:intergenic
TTAATAGGATGCAGAGAACA+AGG 0.553374 2_1:+78816575 Msa0227550:CDS
AATTACAGAGAAATGACGAC+TGG 0.556833 2_1:+78814978 Msa0227550:five_prime_UTR
CAAAAGGATGTTAACAAGCA+AGG 0.558369 2_1:-78818203 None:intergenic
GTGTATAAGGGTCTTGATGT+TGG 0.558699 2_1:+78813788 Msa0227550:five_prime_UTR
GCCATTGAGCCTCAGACAGA+AGG 0.563993 2_1:-78815893 None:intergenic
CGGTAAGAGCCGTCTCGCAA+TGG 0.565346 2_1:+78813185 Msa0227550:five_prime_UTR
GACATACTTCATCCATCTGA+AGG 0.571668 2_1:+78814059 Msa0227550:five_prime_UTR
TGAACATTATGATGACATCA+AGG 0.571904 2_1:-78818353 None:intergenic
GCATCCTATTAAGTAATCCA+TGG 0.573382 2_1:-78816564 None:intergenic
ATAGTTATTTCTGGACCCAC+CGG 0.573440 2_1:+78813159 Msa0227550:five_prime_UTR
GATAATCAATTGATTTGTAG+AGG 0.576340 2_1:-78815663 None:intergenic
CCGGGAGGCGGAGGCACGTG+CGG 0.577791 2_1:-78813041 None:intergenic
GTTTAGAAGCGTCAAGCCAA+TGG 0.583750 2_1:-78817324 None:intergenic
GCACTGGACTGTATTTAAGA+TGG 0.588035 2_1:+78814306 Msa0227550:five_prime_UTR
CTGGGAAGCTGCTGTACAGT+TGG 0.592385 2_1:+78814997 Msa0227550:five_prime_UTR
GGAAGCTGCTGTACAGTTGG+TGG 0.596218 2_1:+78815000 Msa0227550:five_prime_UTR
AAAGAAAACAGACCTTCAGA+TGG 0.597193 2_1:-78814071 None:intergenic
CAAAATACCTATTTCTGGTG+CGG 0.602995 2_1:-78817938 None:intergenic
TATGGTATCCGAAAAGCAGA+AGG 0.603536 2_1:-78815490 None:intergenic
AATAGGATGCAGAGAACAAG+GGG 0.606555 2_1:+78816577 Msa0227550:CDS
TAGCGAGTTCCATTGCGAGA+CGG 0.606605 2_1:-78813194 None:intergenic
TTGAGATGTTATCTCTGCAG+AGG 0.613063 2_1:-78814936 None:intergenic
TAATAGGATGCAGAGAACAA+GGG 0.615293 2_1:+78816576 Msa0227550:CDS
ACATTGAATAAATAAATGCA+TGG 0.617813 2_1:-78815271 None:intergenic
GGTGATTATAGAGTTGCTGA+TGG 0.618618 2_1:+78815532 Msa0227550:CDS
AACGGAGAAGAAGAAAGAGA+AGG 0.621988 2_1:+78813134 Msa0227550:five_prime_UTR
GCTTGACGCTTCTAAACCTG+TGG 0.623923 2_1:+78817330 Msa0227550:CDS
TATGATTCTTTCAGGGAACA+GGG 0.627524 2_1:+78815511 Msa0227550:CDS
GTACAGTTGGTGGTAAAAGC+AGG 0.629027 2_1:+78815010 Msa0227550:five_prime_UTR
GGTAAAAGCAGGTGATCCAA+AGG 0.631846 2_1:+78815021 Msa0227550:five_prime_UTR
CGTGTTCCGATTGTTGTTGG+GGG 0.635484 2_1:+78814284 Msa0227550:five_prime_UTR
ATCCTGGTTTGCGTAAAAGG+AGG 0.645026 2_1:-78818330 None:intergenic
ACAGAAGACTCAGAAGTGAA+GGG 0.645454 2_1:+78818085 Msa0227550:exon
CGCCGGAAATTGTAAGAGAG+CGG 0.646103 2_1:-78813087 None:intergenic
ATGCATTTATTTATTCAATG+TGG 0.655204 2_1:+78815273 Msa0227550:five_prime_UTR
ATCATGAATGAAGTTCAGAA+CGG 0.659921 2_1:-78817817 None:intergenic
ATTACAGAGAAATGACGACT+GGG 0.664187 2_1:+78814979 Msa0227550:five_prime_UTR
CGGCTCTTACCGGAACCGGT+GGG 0.678594 2_1:-78813174 None:intergenic
GGTATCCGAAAAGCAGAAGG+AGG 0.686824 2_1:-78815487 None:intergenic
AGTATGTCAACCAGATGATG+CGG 0.688771 2_1:-78814044 None:intergenic
GGAAAATTGGATGTTCCGGG+AGG 0.707103 2_1:-78813056 None:intergenic
AGTCCAAAGATGATGAACAA+CGG 0.709326 2_1:+78813006 Msa0227550:five_prime_UTR
ACAAGATCTATTCTTGACAA+CGG 0.716891 2_1:+78814260 Msa0227550:five_prime_UTR
ATAGGATGCAGAGAACAAGG+GGG 0.808450 2_1:+78816578 Msa0227550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAAGTGATAAAT+CGG + chr2_1:78813583-78813602 Msa0227550:intron 10.0%
!! TTTCAAAAGATATAAATATA+TGG - chr2_1:78815449-78815468 None:intergenic 10.0%
!!! TATATTTATATCTTTTGAAA+TGG + chr2_1:78815449-78815468 Msa0227550:CDS 10.0%
!! AAAATTCTTATAAGTAAAAA+AGG - chr2_1:78817536-78817555 None:intergenic 10.0%
!!! AATTTTTAGAACTATTTTAA+TGG + chr2_1:78817550-78817569 Msa0227550:intron 10.0%
!! ATATTACTCTAGATAATAAT+TGG - chr2_1:78812945-78812964 None:intergenic 15.0%
!!! TTTTGTTTTGTTTTGTTTTT+TGG + chr2_1:78814011-78814030 Msa0227550:intron 15.0%
!!! AATTAGTTTCAAATTACAAT+TGG - chr2_1:78814187-78814206 None:intergenic 15.0%
!! TTATACAATAATATAGTATC+AGG + chr2_1:78814544-78814563 Msa0227550:intron 15.0%
!! TATACAATAATATAGTATCA+GGG + chr2_1:78814545-78814564 Msa0227550:intron 15.0%
!! ATATATTTCAGAAAATTCAA+TGG - chr2_1:78815416-78815435 None:intergenic 15.0%
!! ATTTAATAAATTCCACTAAA+TGG - chr2_1:78816243-78816262 None:intergenic 15.0%
!! TTCATGTATACTTTAAATTA+TGG + chr2_1:78816392-78816411 Msa0227550:intron 15.0%
!!! TTTTGTTTTACATAAGATAA+TGG + chr2_1:78816666-78816685 Msa0227550:intron 15.0%
!!! TAACTATTACTTCTAAAATT+GGG - chr2_1:78817469-78817488 None:intergenic 15.0%
!!! TTAACTATTACTTCTAAAAT+TGG - chr2_1:78817470-78817489 None:intergenic 15.0%
!!! TTTTAGAAGTAATAGTTAAA+TGG + chr2_1:78817471-78817490 Msa0227550:intron 15.0%
!!! TAATAATTGTTTCTATATGA+AGG + chr2_1:78818018-78818037 Msa0227550:intron 15.0%
!! TCTAGATAATAATTGGATAA+AGG - chr2_1:78812938-78812957 None:intergenic 20.0%
!!! TTCTGCTCTTTTTTTTTTTT+TGG - chr2_1:78813339-78813358 None:intergenic 20.0%
!!! AACGTATAACTCTTTTTTTT+TGG - chr2_1:78813707-78813726 None:intergenic 20.0%
!!! GATGTTTTCTTTATTCAATA+CGG + chr2_1:78813744-78813763 Msa0227550:intron 20.0%
!!! TTTTGTTTTGTTTTTTGGTT+AGG + chr2_1:78814016-78814035 Msa0227550:intron 20.0%
!! TATTTATCAGATTATTCTGT+TGG + chr2_1:78814209-78814228 Msa0227550:intron 20.0%
!! ATTTATCAGATTATTCTGTT+GGG + chr2_1:78814210-78814229 Msa0227550:intron 20.0%
!!! TCTTTGATGTTTAAAATACA+AGG + chr2_1:78814882-78814901 Msa0227550:intron 20.0%
!! TAAAATACAAGGTTCATATA+TGG + chr2_1:78814893-78814912 Msa0227550:intron 20.0%
!! ACATTGAATAAATAAATGCA+TGG - chr2_1:78815274-78815293 None:intergenic 20.0%
!! ATGCATTTATTTATTCAATG+TGG + chr2_1:78815273-78815292 Msa0227550:five_prime_UTR 20.0%
!! ATACATACAAAGAAAAATAC+AGG - chr2_1:78815369-78815388 None:intergenic 20.0%
!!! TTTTTCTTTGTATGTATATG+TGG + chr2_1:78815372-78815391 Msa0227550:CDS 20.0%
!! TCTACAAATCAATTGATTAT+CGG + chr2_1:78815665-78815684 Msa0227550:CDS 20.0%
!! TATGATATTAGGTAATTAAC+TGG + chr2_1:78815696-78815715 Msa0227550:intron 20.0%
!! CTCAAATAAAGAAATAGATT+TGG + chr2_1:78816037-78816056 Msa0227550:intron 20.0%
!! CATGCTTTAATAAATATCAT+TGG + chr2_1:78816088-78816107 Msa0227550:intron 20.0%
!! TATTTATTCTTTCCATTTAG+TGG + chr2_1:78816228-78816247 Msa0227550:intron 20.0%
!!! TTTAAAGTATACATGAACAT+GGG - chr2_1:78816389-78816408 None:intergenic 20.0%
!!! ATTTAAAGTATACATGAACA+TGG - chr2_1:78816390-78816409 None:intergenic 20.0%
!! TTTAAATTATGGTTGCAATT+CGG + chr2_1:78816403-78816422 Msa0227550:intron 20.0%
!! CAAAAATGCAAATATCATAT+AGG - chr2_1:78816487-78816506 None:intergenic 20.0%
!! TTTGATATAAATAGTGAGAA+TGG + chr2_1:78816503-78816522 Msa0227550:intron 20.0%
!!! GTGTTTTTTTTTTATGTTCA+TGG - chr2_1:78816758-78816777 None:intergenic 20.0%
!!! TTTCTTTTTAAAGAAAAAGC+TGG + chr2_1:78817071-78817090 Msa0227550:intron 20.0%
!! TATACATAAGAAATTAGATG+AGG - chr2_1:78817405-78817424 None:intergenic 20.0%
!! ATCTAATTTCTTATGTATAC+TGG + chr2_1:78817406-78817425 Msa0227550:intron 20.0%
!! GCATAAGCTTAAAAAAATTA+CGG - chr2_1:78817767-78817786 None:intergenic 20.0%
!! AAAAACAAAATACCTATTTC+TGG - chr2_1:78817946-78817965 None:intergenic 20.0%
!!! CTACATATTTGGAATTATAA+AGG + chr2_1:78818143-78818162 Msa0227550:three_prime_UTR 20.0%
!! CAAGTATTTCAAGTGATTTA+AGG + chr2_1:78813429-78813448 Msa0227550:intron 25.0%
!! TGTGAATTTTGTATAATCGT+AGG + chr2_1:78813498-78813517 Msa0227550:intron 25.0%
! GCAATTAATTACTATGTGTA+TGG + chr2_1:78813643-78813662 Msa0227550:intron 25.0%
! AAAAGAGTTATACGTTACAA+TGG + chr2_1:78813711-78813730 Msa0227550:intron 25.0%
!!! CTTTTTTTACAGGTGTATAA+GGG + chr2_1:78813776-78813795 Msa0227550:intron 25.0%
! ACCTTTCTATCATTTAATGA+AGG - chr2_1:78813824-78813843 None:intergenic 25.0%
! ATTTAGTTGCAACATAGAAA+TGG + chr2_1:78813958-78813977 Msa0227550:intron 25.0%
! TTTAGTTGCAACATAGAAAT+GGG + chr2_1:78813959-78813978 Msa0227550:intron 25.0%
! TTACAATTGGCCAAAATAAA+AGG - chr2_1:78814174-78814193 None:intergenic 25.0%
! ACAAAGTAGGTAATTGAAAA+AGG - chr2_1:78814336-78814355 None:intergenic 25.0%
! GAATATGTAGTTAACAAAGT+AGG - chr2_1:78814349-78814368 None:intergenic 25.0%
! ATTTCCTTATTGTGAAATAG+TGG + chr2_1:78814379-78814398 Msa0227550:intron 25.0%
!! AAGAGAGCATAAATAGTAAA+TGG + chr2_1:78814430-78814449 Msa0227550:intron 25.0%
! TATACTTTGTAGGTATACTA+TGG + chr2_1:78814635-78814654 Msa0227550:intron 25.0%
!! TTTATCCAATCTTTTGGTAA+AGG - chr2_1:78815172-78815191 None:intergenic 25.0%
! ATAATGAAAATGAGAAAGAC+AGG - chr2_1:78815229-78815248 None:intergenic 25.0%
!!! GATAATCAATTGATTTGTAG+AGG - chr2_1:78815666-78815685 None:intergenic 25.0%
! TCTAATAGCAATAAATCTCT+TGG + chr2_1:78815844-78815863 Msa0227550:intron 25.0%
! GATATTTATTAAAGCATGTC+TGG - chr2_1:78816086-78816105 None:intergenic 25.0%
!! TTAACATTCTCCCAATTTTT+AGG + chr2_1:78816112-78816131 Msa0227550:intron 25.0%
! TCCAAAAGCTTAAATAAACA+GGG - chr2_1:78816138-78816157 None:intergenic 25.0%
! TTCCAAAAGCTTAAATAAAC+AGG - chr2_1:78816139-78816158 None:intergenic 25.0%
! TATGTAAAAATACAGCATGT+AGG - chr2_1:78816462-78816481 None:intergenic 25.0%
!! GCATTTTCTAATTACAACAA+TGG - chr2_1:78817028-78817047 None:intergenic 25.0%
! GTAATGAACATATTTACCAT+TGG + chr2_1:78817308-78817327 Msa0227550:CDS 25.0%
! TTCTTATAAGTAAAAAAGGC+AGG - chr2_1:78817532-78817551 None:intergenic 25.0%
!!! GGTATTTTGTTTTTAGTATC+TGG + chr2_1:78817952-78817971 Msa0227550:intron 25.0%
!!! ATTGTTATCCTATTTTGGAA+TGG + chr2_1:78818060-78818079 Msa0227550:CDS 25.0%
! TCTACATAAAAGTCAACAAA+AGG - chr2_1:78818222-78818241 None:intergenic 25.0%
AATTCATACCTGAACAGAAT+CGG - chr2_1:78813247-78813266 None:intergenic 30.0%
TAATCAAGGTAGCTAAAATC+AGG - chr2_1:78813546-78813565 None:intergenic 30.0%
!!! TGATTTTAGCTACCTTGATT+AGG + chr2_1:78813545-78813564 Msa0227550:intron 30.0%
AAAAACAAACCTCCTAATCA+AGG - chr2_1:78813560-78813579 None:intergenic 30.0%
AATCGGTTAAGAATGATATG+TGG + chr2_1:78813600-78813619 Msa0227550:intron 30.0%
!!! GCTTTTTTTACAGGTGTATA+AGG + chr2_1:78813775-78813794 Msa0227550:intron 30.0%
GCCTTCATTAAATGATAGAA+AGG + chr2_1:78813820-78813839 Msa0227550:five_prime_UTR 30.0%
!! TTTTCAGAGGCCTTTTATTT+TGG + chr2_1:78814161-78814180 Msa0227550:intron 30.0%
ACAAGATCTATTCTTGACAA+CGG + chr2_1:78814260-78814279 Msa0227550:five_prime_UTR 30.0%
TGTACAGAAGACAAATCAAT+TGG - chr2_1:78814715-78814734 None:intergenic 30.0%
GTGATAATTCACTAAAACAG+TGG - chr2_1:78814777-78814796 None:intergenic 30.0%
TACTTATAGACCAGTTTATG+TGG + chr2_1:78814837-78814856 Msa0227550:intron 30.0%
AATCATTCACTGCTATATGT+TGG - chr2_1:78815048-78815067 None:intergenic 30.0%
AACATATAGCAGTGAATGAT+TGG + chr2_1:78815047-78815066 Msa0227550:five_prime_UTR 30.0%
ACTAACCTTTACCAAAAGAT+TGG + chr2_1:78815164-78815183 Msa0227550:five_prime_UTR 30.0%
!! GAGAGTTTTATCCAATCTTT+TGG - chr2_1:78815178-78815197 None:intergenic 30.0%
GTATGTATATGTGGAATGTA+TGG + chr2_1:78815381-78815400 Msa0227550:CDS 30.0%
GATACCATATGATTCTTTCA+GGG + chr2_1:78815504-78815523 Msa0227550:CDS 30.0%
ATAAACAGGGCCTAAAAATT+GGG - chr2_1:78816125-78816144 None:intergenic 30.0%
AATAAACAGGGCCTAAAAAT+TGG - chr2_1:78816126-78816145 None:intergenic 30.0%
! AGAGTAGCTTCTGAAAATAA+CGG - chr2_1:78816296-78816315 None:intergenic 30.0%
CTGAATTTCAAAAAGCTTCA+AGG + chr2_1:78816636-78816655 Msa0227550:CDS 30.0%
CATAATTTAGCCAATGTCAA+GGG - chr2_1:78816694-78816713 None:intergenic 30.0%
ACATAATTTAGCCAATGTCA+AGG - chr2_1:78816695-78816714 None:intergenic 30.0%
ACAACTTAAAGTATGCTATG+TGG + chr2_1:78816715-78816734 Msa0227550:intron 30.0%
CAACTTAAAGTATGCTATGT+GGG + chr2_1:78816716-78816735 Msa0227550:intron 30.0%
TGTAATTAGAAAATGCATGC+TGG + chr2_1:78817032-78817051 Msa0227550:intron 30.0%
GTAATTAGAAAATGCATGCT+GGG + chr2_1:78817033-78817052 Msa0227550:intron 30.0%
!!! TTACTTGATTTGGTTTTTGC+AGG + chr2_1:78817254-78817273 Msa0227550:intron 30.0%
AGATTCAATCATTATACCAC+AGG - chr2_1:78817349-78817368 None:intergenic 30.0%
GGTATAGTTGTTAGTATCTA+GGG - chr2_1:78817511-78817530 None:intergenic 30.0%
AGGTATAGTTGTTAGTATCT+AGG - chr2_1:78817512-78817531 None:intergenic 30.0%
ACGTGCTTTAACATACTTTA+TGG + chr2_1:78817628-78817647 Msa0227550:intron 30.0%
! ACTTTATGGAAGTCCTTTTA+TGG + chr2_1:78817642-78817661 Msa0227550:intron 30.0%
TGCATGTTGTTGTATGTAAT+TGG + chr2_1:78817711-78817730 Msa0227550:intron 30.0%
ATGTTGTTGTATGTAATTGG+AGG + chr2_1:78817714-78817733 Msa0227550:intron 30.0%
TATGATGAACAACTTATTCC+AGG + chr2_1:78817791-78817810 Msa0227550:intron 30.0%
ATCATGAATGAAGTTCAGAA+CGG - chr2_1:78817820-78817839 None:intergenic 30.0%
AAAGATTTCCATTCTGATTG+TGG - chr2_1:78817848-78817867 None:intergenic 30.0%
TAATATCTCTCGACATTCTA+AGG - chr2_1:78817884-78817903 None:intergenic 30.0%
!!! ATATGAAGGCATTTTGTGAA+CGG + chr2_1:78818032-78818051 Msa0227550:intron 30.0%
! GGAAGATTGTTATCCTATTT+TGG + chr2_1:78818055-78818074 Msa0227550:CDS 30.0%
TTCTGTATCCATTCCAAAAT+AGG - chr2_1:78818071-78818090 None:intergenic 30.0%
GCTTGAATTAGCTACATATT+TGG + chr2_1:78818132-78818151 Msa0227550:three_prime_UTR 30.0%
!! GAATTATAAAGGAGTATTGC+AGG + chr2_1:78818154-78818173 Msa0227550:three_prime_UTR 30.0%
AGTCCAAAGATGATGAACAA+CGG + chr2_1:78813006-78813025 Msa0227550:five_prime_UTR 35.0%
ATGATGCAGTGACGAAAAAA+CGG - chr2_1:78813113-78813132 None:intergenic 35.0%
TTTCGTCACTGCATCATTAA+CGG + chr2_1:78813116-78813135 Msa0227550:five_prime_UTR 35.0%
! GAGAAGGTGATAGTTATTTC+TGG + chr2_1:78813150-78813169 Msa0227550:five_prime_UTR 35.0%
GAGCAGAATTTGAACTAACA+AGG + chr2_1:78813351-78813370 Msa0227550:intron 35.0%
AAGGTAGCTAAAATCAGGAA+GGG - chr2_1:78813541-78813560 None:intergenic 35.0%
!! TTTTAGCTACCTTGATTAGG+AGG + chr2_1:78813548-78813567 Msa0227550:intron 35.0%
TACACCTGTAAAAAAAGCCA+CGG - chr2_1:78813773-78813792 None:intergenic 35.0%
AAAGAAAACAGACCTTCAGA+TGG - chr2_1:78814074-78814093 None:intergenic 35.0%
GTGTATGAGGATATGTGTAT+AGG - chr2_1:78814124-78814143 None:intergenic 35.0%
ACAGCCACTATTTCACAATA+AGG - chr2_1:78814386-78814405 None:intergenic 35.0%
ACTTGCGGAAATAAGAAAAG+TGG - chr2_1:78814459-78814478 None:intergenic 35.0%
ATGACTTCATCAGTAACTTG+CGG - chr2_1:78814474-78814493 None:intergenic 35.0%
GGGAAAAAGTAATGCAGAAT+TGG + chr2_1:78814565-78814584 Msa0227550:intron 35.0%
! AAGTAATGCAGAATTGGTTC+TGG + chr2_1:78814571-78814590 Msa0227550:intron 35.0%
AGGATGTGCATATACTTTGT+AGG + chr2_1:78814625-78814644 Msa0227550:intron 35.0%
! CTATGGTGATTTACTAGTCT+TGG + chr2_1:78814652-78814671 Msa0227550:intron 35.0%
GGTATATACTCCACATAAAC+TGG - chr2_1:78814850-78814869 None:intergenic 35.0%
GATAACATCTCAAGCTTGTA+TGG + chr2_1:78814946-78814965 Msa0227550:five_prime_UTR 35.0%
AATTACAGAGAAATGACGAC+TGG + chr2_1:78814978-78814997 Msa0227550:five_prime_UTR 35.0%
ATTACAGAGAAATGACGACT+GGG + chr2_1:78814979-78814998 Msa0227550:five_prime_UTR 35.0%
!! TGAATGATTGGTACCGATTA+CGG + chr2_1:78815059-78815078 Msa0227550:five_prime_UTR 35.0%
GCGTAGTCTAGAGATTATTA+AGG + chr2_1:78815081-78815100 Msa0227550:five_prime_UTR 35.0%
AATACCTCTAAGTTCTTGAC+TGG + chr2_1:78815139-78815158 Msa0227550:five_prime_UTR 35.0%
GGATACCATATGATTCTTTC+AGG + chr2_1:78815503-78815522 Msa0227550:CDS 35.0%
TGTTCCCTGAAAGAATCATA+TGG - chr2_1:78815511-78815530 None:intergenic 35.0%
ATATGATTCTTTCAGGGAAC+AGG + chr2_1:78815510-78815529 Msa0227550:CDS 35.0%
TATGATTCTTTCAGGGAACA+GGG + chr2_1:78815511-78815530 Msa0227550:CDS 35.0%
GTAGTCTAACTTTGCTGAAT+CGG - chr2_1:78815605-78815624 None:intergenic 35.0%
CGGTGTGAAGATATGATATT+AGG + chr2_1:78815685-78815704 Msa0227550:CDS 35.0%
GCTCAATGGCTTATTGATAT+CGG + chr2_1:78815906-78815925 Msa0227550:CDS 35.0%
!! AATTGCTTTTGTTGGAGAGT+TGG - chr2_1:78815946-78815965 None:intergenic 35.0%
AACTCTCCAACAAAAGCAAT+TGG + chr2_1:78815945-78815964 Msa0227550:CDS 35.0%
!! CTGTAACCAATTGCTTTTGT+TGG - chr2_1:78815954-78815973 None:intergenic 35.0%
! GCCCTGTTTATTTAAGCTTT+TGG + chr2_1:78816134-78816153 Msa0227550:intron 35.0%
GCATCCTATTAAGTAATCCA+TGG - chr2_1:78816567-78816586 None:intergenic 35.0%
TTAATAGGATGCAGAGAACA+AGG + chr2_1:78816575-78816594 Msa0227550:CDS 35.0%
TAATAGGATGCAGAGAACAA+GGG + chr2_1:78816576-78816595 Msa0227550:CDS 35.0%
ACAGATGTTGTCAGAATACT+AGG - chr2_1:78816784-78816803 None:intergenic 35.0%
AGTATTCTGACAACATCTGT+TGG + chr2_1:78816784-78816803 Msa0227550:intron 35.0%
GTATTCTGACAACATCTGTT+GGG + chr2_1:78816785-78816804 Msa0227550:intron 35.0%
CCTTGACTTAATACATACCA+AGG - chr2_1:78816918-78816937 None:intergenic 35.0%
CCTTGGTATGTATTAAGTCA+AGG + chr2_1:78816915-78816934 Msa0227550:intron 35.0%
GGTATGTATTAAGTCAAGGA+TGG + chr2_1:78816919-78816938 Msa0227550:intron 35.0%
CTTTCTCAACTCAGTTAAGT+TGG + chr2_1:78816995-78817014 Msa0227550:intron 35.0%
TAACGTCATGATGCATAGTT+GGG - chr2_1:78817114-78817133 None:intergenic 35.0%
ATTTGGCAATGCTCTTGATT+TGG + chr2_1:78817185-78817204 Msa0227550:intron 35.0%
GTTTCGTCTCTTACTTGATT+TGG + chr2_1:78817244-78817263 Msa0227550:intron 35.0%
CACTACTTAGGTTCCATAAA+AGG - chr2_1:78817658-78817677 None:intergenic 35.0%
! CTTTTATGGAACCTAAGTAG+TGG + chr2_1:78817656-78817675 Msa0227550:intron 35.0%
GCATAAGATAACCACTACTT+AGG - chr2_1:78817670-78817689 None:intergenic 35.0%
TCGAATAGCTGCTAAACTAA+AGG + chr2_1:78817911-78817930 Msa0227550:CDS 35.0%
!! CAAAATACCTATTTCTGGTG+CGG - chr2_1:78817941-78817960 None:intergenic 35.0%
!!! TATGAAGGCATTTTGTGAAC+GGG + chr2_1:78818033-78818052 Msa0227550:intron 35.0%
!! AGGAGTATTGCAGGTTAAAT+AGG + chr2_1:78818163-78818182 Msa0227550:three_prime_UTR 35.0%
CAAAAGGATGTTAACAAGCA+AGG - chr2_1:78818206-78818225 None:intergenic 35.0%
ACTCCGTTGTTCATCATCTT+TGG - chr2_1:78813012-78813031 None:intergenic 40.0%
AACGGAGAAGAAGAAAGAGA+AGG + chr2_1:78813134-78813153 Msa0227550:five_prime_UTR 40.0%
!! ATAGTTATTTCTGGACCCAC+CGG + chr2_1:78813159-78813178 Msa0227550:five_prime_UTR 40.0%
CACTAACAATTTCGCCATTG+AGG - chr2_1:78813224-78813243 None:intergenic 40.0%
AGGTAGCTAAAATCAGGAAG+GGG - chr2_1:78813540-78813559 None:intergenic 40.0%
CAAGGTAGCTAAAATCAGGA+AGG - chr2_1:78813542-78813561 None:intergenic 40.0%
TTTATTCAATACGGCTTCCG+TGG + chr2_1:78813753-78813772 Msa0227550:intron 40.0%
GTGTATAAGGGTCTTGATGT+TGG + chr2_1:78813788-78813807 Msa0227550:five_prime_UTR 40.0%
ACAGACAATCCAAGTCACAA+TGG - chr2_1:78813918-78813937 None:intergenic 40.0%
AGTATGTCAACCAGATGATG+CGG - chr2_1:78814047-78814066 None:intergenic 40.0%
GACATACTTCATCCATCTGA+AGG + chr2_1:78814059-78814078 Msa0227550:five_prime_UTR 40.0%
ACGATGGAGAAATGTGTATG+AGG - chr2_1:78814137-78814156 None:intergenic 40.0%
CATACACATTTCTCCATCGT+TGG + chr2_1:78814137-78814156 Msa0227550:intron 40.0%
!!! TTCTGTTGGGCAGTTTTTTG+AGG + chr2_1:78814223-78814242 Msa0227550:five_prime_UTR 40.0%
GCACTGGACTGTATTTAAGA+TGG + chr2_1:78814306-78814325 Msa0227550:five_prime_UTR 40.0%
! TGCATGACTTGCGTAATTGA+AGG + chr2_1:78814605-78814624 Msa0227550:intron 40.0%
! AATACACGATCTGAAGCTAG+AGG + chr2_1:78814688-78814707 Msa0227550:intron 40.0%
CATCAAAGAACAGAGCTCAT+AGG - chr2_1:78814871-78814890 None:intergenic 40.0%
TTGAGATGTTATCTCTGCAG+AGG - chr2_1:78814939-78814958 None:intergenic 40.0%
ACTGCTATATGTTGGACCTT+TGG - chr2_1:78815040-78815059 None:intergenic 40.0%
GTATCCAGTCAAGAACTTAG+AGG - chr2_1:78815146-78815165 None:intergenic 40.0%
ATGAGAAAGACAGGCAAGAA+TGG - chr2_1:78815220-78815239 None:intergenic 40.0%
!!! CTTTTGAAATGGCAGTCTAG+TGG + chr2_1:78815460-78815479 Msa0227550:CDS 40.0%
TATGGTATCCGAAAAGCAGA+AGG - chr2_1:78815493-78815512 None:intergenic 40.0%
GGTGATTATAGAGTTGCTGA+TGG + chr2_1:78815532-78815551 Msa0227550:CDS 40.0%
! TCTTGGTTCTCTTTGATTGC+AGG + chr2_1:78815861-78815880 Msa0227550:intron 40.0%
TTTGTTGGAGAGTTGGAGTT+TGG - chr2_1:78815939-78815958 None:intergenic 40.0%
GCTTGTGATTCACCAATTTC+AGG + chr2_1:78816541-78816560 Msa0227550:intron 40.0%
AGTAATCCATGGCCTGAAAT+TGG - chr2_1:78816556-78816575 None:intergenic 40.0%
! CAGGCCATGGATTACTTAAT+AGG + chr2_1:78816560-78816579 Msa0227550:intron 40.0%
AATAGGATGCAGAGAACAAG+GGG + chr2_1:78816577-78816596 Msa0227550:CDS 40.0%
! GATAATGGTACCCTTGACAT+TGG + chr2_1:78816681-78816700 Msa0227550:intron 40.0%
!! TTGGGCAAGTTGATTGGTTA+TGG + chr2_1:78816803-78816822 Msa0227550:intron 40.0%
! AAGCTTTTCATGCTCAACCT+TGG + chr2_1:78816898-78816917 Msa0227550:intron 40.0%
TTAGAAAATGCATGCTGGGA+TGG + chr2_1:78817037-78817056 Msa0227550:intron 40.0%
TAGAAAATGCATGCTGGGAT+GGG + chr2_1:78817038-78817057 Msa0227550:intron 40.0%
CTAACGTCATGATGCATAGT+TGG - chr2_1:78817115-78817134 None:intergenic 40.0%
GTTCACAACCAGCAAAACAT+GGG - chr2_1:78817144-78817163 None:intergenic 40.0%
TGTTCACAACCAGCAAAACA+TGG - chr2_1:78817145-78817164 None:intergenic 40.0%
GTTGTGAACAGTAGTTTAGC+TGG + chr2_1:78817155-78817174 Msa0227550:intron 40.0%
TGAACAGTAGTTTAGCTGGT+TGG + chr2_1:78817159-78817178 Msa0227550:intron 40.0%
GAACAGTAGTTTAGCTGGTT+GGG + chr2_1:78817160-78817179 Msa0227550:intron 40.0%
GTTTAGCTGGTTGGGTTATT+TGG + chr2_1:78817168-78817187 Msa0227550:intron 40.0%
!!! GCTCTTGATTTGGTTTTTGC+AGG + chr2_1:78817195-78817214 Msa0227550:intron 40.0%
ATGAAGATGTAGTGCTCTAG+TGG - chr2_1:78817376-78817395 None:intergenic 40.0%
GATGCATACCACAATCAGAA+TGG + chr2_1:78817837-78817856 Msa0227550:CDS 40.0%
!! TCTCGACATTCTAAGGTGTT+CGG - chr2_1:78817877-78817896 None:intergenic 40.0%
!!! ATGAAGGCATTTTGTGAACG+GGG + chr2_1:78818034-78818053 Msa0227550:intron 40.0%
TACAGAAGACTCAGAAGTGA+AGG + chr2_1:78818084-78818103 Msa0227550:CDS 40.0%
ACAGAAGACTCAGAAGTGAA+GGG + chr2_1:78818085-78818104 Msa0227550:exon 40.0%
CTCGGAAAATTGGATGTTCC+GGG - chr2_1:78813062-78813081 None:intergenic 45.0%
GCTCGGAAAATTGGATGTTC+CGG - chr2_1:78813063-78813082 None:intergenic 45.0%
CTCCGCTCTCTTACAATTTC+CGG + chr2_1:78813085-78813104 Msa0227550:five_prime_UTR 45.0%
!! TGTTAGTGCCGATTCTGTTC+AGG + chr2_1:78813236-78813255 Msa0227550:five_prime_UTR 45.0%
!!! GCTTCCGTGGCTTTTTTTAC+AGG + chr2_1:78813766-78813785 Msa0227550:intron 45.0%
TGTTCCTTGCCATTGTGACT+TGG + chr2_1:78813906-78813925 Msa0227550:intron 45.0%
CAATCCAAGTCACAATGGCA+AGG - chr2_1:78813913-78813932 None:intergenic 45.0%
! CTCCATCGTTGGATTTTCAG+AGG + chr2_1:78814148-78814167 Msa0227550:intron 45.0%
!!! GGCAGTTTTTTGAGGATGCA+AGG + chr2_1:78814231-78814250 Msa0227550:five_prime_UTR 45.0%
! GTCGTGTTCCGATTGTTGTT+GGG + chr2_1:78814282-78814301 Msa0227550:five_prime_UTR 45.0%
! TCGTGTTCCGATTGTTGTTG+GGG + chr2_1:78814283-78814302 Msa0227550:five_prime_UTR 45.0%
GTTATCTCTGCAGAGGCTTT+AGG - chr2_1:78814932-78814951 None:intergenic 45.0%
!! GTACAGTTGGTGGTAAAAGC+AGG + chr2_1:78815010-78815029 Msa0227550:five_prime_UTR 45.0%
GGTAAAAGCAGGTGATCCAA+AGG + chr2_1:78815021-78815040 Msa0227550:five_prime_UTR 45.0%
TCTCTAGACTACGCCGTAAT+CGG - chr2_1:78815075-78815094 None:intergenic 45.0%
!! GATCACCTCCTTCTGCTTTT+CGG + chr2_1:78815482-78815501 Msa0227550:CDS 45.0%
TGGTTCTCTTTGATTGCAGG+AGG + chr2_1:78815864-78815883 Msa0227550:intron 45.0%
GGTTCTCTTTGATTGCAGGA+GGG + chr2_1:78815865-78815884 Msa0227550:intron 45.0%
GTTCTCTTTGATTGCAGGAG+GGG + chr2_1:78815866-78815885 Msa0227550:intron 45.0%
GATTCACCAATTTCAGGCCA+TGG + chr2_1:78816547-78816566 Msa0227550:intron 45.0%
ATAGGATGCAGAGAACAAGG+GGG + chr2_1:78816578-78816597 Msa0227550:CDS 45.0%
!! CATCTGTTGGGCAAGTTGAT+TGG + chr2_1:78816797-78816816 Msa0227550:intron 45.0%
TGCTTCACTATCTTGCCTGT+AGG + chr2_1:78816949-78816968 Msa0227550:intron 45.0%
CTATCTTGCCTGTAGGACAT+TGG + chr2_1:78816956-78816975 Msa0227550:intron 45.0%
CAACTAGACCAATGTCCTAC+AGG - chr2_1:78816967-78816986 None:intergenic 45.0%
! AGATGCTTCCCATGTTTTGC+TGG + chr2_1:78817133-78817152 Msa0227550:intron 45.0%
TCACGAAACGACAGTTGACT+TGG + chr2_1:78817222-78817241 Msa0227550:intron 45.0%
!! GTTTAGAAGCGTCAAGCCAA+TGG - chr2_1:78817327-78817346 None:intergenic 45.0%
CAACTGTCACACTTGCATTG+TGG + chr2_1:78817582-78817601 Msa0227550:intron 45.0%
TGAAGTTCAGAACGGTTTCC+TGG - chr2_1:78817812-78817831 None:intergenic 45.0%
!! CTCGACATTCTAAGGTGTTC+GGG - chr2_1:78817876-78817895 None:intergenic 45.0%
AAGACTCAGAAGTGAAGGGA+TGG + chr2_1:78818089-78818108 Msa0227550:exon 45.0%
! TTCCTCCTTTTACGCAAACC+AGG + chr2_1:78818328-78818347 Msa0227550:three_prime_UTR 45.0%
! ATCCTGGTTTGCGTAAAAGG+AGG - chr2_1:78818333-78818352 None:intergenic 45.0%
! AGGATCCTGGTTTGCGTAAA+AGG - chr2_1:78818336-78818355 None:intergenic 45.0%
AAATTGGATGTTCCGGGAGG+CGG - chr2_1:78813056-78813075 None:intergenic 50.0%
GGAAAATTGGATGTTCCGGG+AGG - chr2_1:78813059-78813078 None:intergenic 50.0%
AGCGGAGTTGCTCGGAAAAT+TGG - chr2_1:78813072-78813091 None:intergenic 50.0%
TGTAAGAGAGCGGAGTTGCT+CGG - chr2_1:78813080-78813099 None:intergenic 50.0%
CGCCGGAAATTGTAAGAGAG+CGG - chr2_1:78813090-78813109 None:intergenic 50.0%
TAGCGAGTTCCATTGCGAGA+CGG - chr2_1:78813197-78813216 None:intergenic 50.0%
GAACTCGCTAAACGCCTCAA+TGG + chr2_1:78813207-78813226 Msa0227550:five_prime_UTR 50.0%
!! TTAGGAAGTGCCGCATCATC+TGG + chr2_1:78814034-78814053 Msa0227550:intron 50.0%
! GGCCTCTGAAAATCCAACGA+TGG - chr2_1:78814153-78814172 None:intergenic 50.0%
GGTCGTGTTCCGATTGTTGT+TGG + chr2_1:78814281-78814300 Msa0227550:five_prime_UTR 50.0%
! CGTGTTCCGATTGTTGTTGG+GGG + chr2_1:78814284-78814303 Msa0227550:five_prime_UTR 50.0%
GGTATCCGAAAAGCAGAAGG+AGG - chr2_1:78815490-78815509 None:intergenic 50.0%
GGTCAAGTCTGTCGCTAGAA+AGG - chr2_1:78815645-78815664 None:intergenic 50.0%
TCTTTGATTGCAGGAGGGGA+TGG + chr2_1:78815870-78815889 Msa0227550:intron 50.0%
TCGCGAAACGACAGTTGACT+TGG + chr2_1:78817281-78817300 Msa0227550:CDS 50.0%
GCTTGACGCTTCTAAACCTG+TGG + chr2_1:78817330-78817349 Msa0227550:CDS 50.0%
AGGCTTACCGCACCAGAAAT+AGG + chr2_1:78817931-78817950 Msa0227550:CDS 50.0%
CAGTGACGAAAAAACGGCGC+CGG - chr2_1:78813107-78813126 None:intergenic 55.0%
!! ATTTCTGGACCCACCGGTTC+CGG + chr2_1:78813165-78813184 Msa0227550:five_prime_UTR 55.0%
CATTGCGAGACGGCTCTTAC+CGG - chr2_1:78813187-78813206 None:intergenic 55.0%
CCAGTGCCCCCAACAACAAT+CGG - chr2_1:78814293-78814312 None:intergenic 55.0%
!! GCAGAGGCTTTAGGCACATC+TGG - chr2_1:78814923-78814942 None:intergenic 55.0%
CTGGGAAGCTGCTGTACAGT+TGG + chr2_1:78814997-78815016 Msa0227550:five_prime_UTR 55.0%
GGAAGCTGCTGTACAGTTGG+TGG + chr2_1:78815000-78815019 Msa0227550:five_prime_UTR 55.0%
! GCCTTCTGTCTGAGGCTCAA+TGG + chr2_1:78815892-78815911 Msa0227550:CDS 55.0%
GCCATTGAGCCTCAGACAGA+AGG - chr2_1:78815896-78815915 None:intergenic 55.0%
GAGACGGCTCTTACCGGAAC+CGG - chr2_1:78813181-78813200 None:intergenic 60.0%
CGGTAAGAGCCGTCTCGCAA+TGG + chr2_1:78813185-78813204 Msa0227550:five_prime_UTR 60.0%
! CCGATTGTTGTTGGGGGCAC+TGG + chr2_1:78814290-78814309 Msa0227550:five_prime_UTR 60.0%
AGGGGATGGCCTTCTGTCTG+AGG + chr2_1:78815884-78815903 Msa0227550:CDS 60.0%
CAAGGGGGTCAGAGTTCAGC+TGG + chr2_1:78816593-78816612 Msa0227550:CDS 60.0%
TTGGATGTTCCGGGAGGCGG+AGG - chr2_1:78813053-78813072 None:intergenic 65.0%
CGGCTCTTACCGGAACCGGT+GGG - chr2_1:78813177-78813196 None:intergenic 65.0%
ACGGCTCTTACCGGAACCGG+TGG - chr2_1:78813178-78813197 None:intergenic 65.0%
!! CCGGGAGGCGGAGGCACGTG+CGG - chr2_1:78813044-78813063 None:intergenic 80.0%
! CCGCACGTGCCTCCGCCTCC+CGG + chr2_1:78813041-78813060 Msa0227550:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 78812928 78818365 78812928 ID=Msa0227550;Name=Msa0227550
chr2_1 mRNA 78812928 78818365 78812928 ID=Msa0227550-mRNA-1;Parent=Msa0227550;Name=Msa0227550-mRNA-1;_AED=0.14;_eAED=0.14;_QI=987|1|1|1|1|0.9|10|262|273
chr2_1 exon 78812928 78813257 78812928 ID=Msa0227550-mRNA-1:exon:23962;Parent=Msa0227550-mRNA-1
chr2_1 exon 78813788 78813841 78813788 ID=Msa0227550-mRNA-1:exon:23963;Parent=Msa0227550-mRNA-1
chr2_1 exon 78814038 78814080 78814038 ID=Msa0227550-mRNA-1:exon:23964;Parent=Msa0227550-mRNA-1
chr2_1 exon 78814219 78814327 78814219 ID=Msa0227550-mRNA-1:exon:23965;Parent=Msa0227550-mRNA-1
chr2_1 exon 78814904 78815706 78814904 ID=Msa0227550-mRNA-1:exon:23966;Parent=Msa0227550-mRNA-1
chr2_1 exon 78815883 78815977 78815883 ID=Msa0227550-mRNA-1:exon:23967;Parent=Msa0227550-mRNA-1
chr2_1 exon 78816563 78816657 78816563 ID=Msa0227550-mRNA-1:exon:23968;Parent=Msa0227550-mRNA-1
chr2_1 exon 78817276 78817351 78817276 ID=Msa0227550-mRNA-1:exon:23969;Parent=Msa0227550-mRNA-1
chr2_1 exon 78817813 78817952 78817813 ID=Msa0227550-mRNA-1:exon:23970;Parent=Msa0227550-mRNA-1
chr2_1 exon 78818040 78818365 78818040 ID=Msa0227550-mRNA-1:exon:23971;Parent=Msa0227550-mRNA-1
chr2_1 five_prime_UTR 78812928 78813257 78812928 ID=Msa0227550-mRNA-1:five_prime_utr;Parent=Msa0227550-mRNA-1
chr2_1 five_prime_UTR 78813788 78813841 78813788 ID=Msa0227550-mRNA-1:five_prime_utr;Parent=Msa0227550-mRNA-1
chr2_1 five_prime_UTR 78814038 78814080 78814038 ID=Msa0227550-mRNA-1:five_prime_utr;Parent=Msa0227550-mRNA-1
chr2_1 five_prime_UTR 78814219 78814327 78814219 ID=Msa0227550-mRNA-1:five_prime_utr;Parent=Msa0227550-mRNA-1
chr2_1 five_prime_UTR 78814904 78815354 78814904 ID=Msa0227550-mRNA-1:five_prime_utr;Parent=Msa0227550-mRNA-1
chr2_1 CDS 78815355 78815706 78815355 ID=Msa0227550-mRNA-1:cds;Parent=Msa0227550-mRNA-1
chr2_1 CDS 78815883 78815977 78815883 ID=Msa0227550-mRNA-1:cds;Parent=Msa0227550-mRNA-1
chr2_1 CDS 78816563 78816657 78816563 ID=Msa0227550-mRNA-1:cds;Parent=Msa0227550-mRNA-1
chr2_1 CDS 78817276 78817351 78817276 ID=Msa0227550-mRNA-1:cds;Parent=Msa0227550-mRNA-1
chr2_1 CDS 78817813 78817952 78817813 ID=Msa0227550-mRNA-1:cds;Parent=Msa0227550-mRNA-1
chr2_1 CDS 78818040 78818103 78818040 ID=Msa0227550-mRNA-1:cds;Parent=Msa0227550-mRNA-1
chr2_1 three_prime_UTR 78818104 78818365 78818104 ID=Msa0227550-mRNA-1:three_prime_utr;Parent=Msa0227550-mRNA-1
Gene Sequence

>Msa0227550

ATGTGTTTATACCTGTATTTTTCTTTGTATGTATATGTGGAATGTATGGTTTCTTTGACCATTGAATTTTCTGAAATATATCATCAATTCACCATATATTTATATCTTTTGAAATGGCAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGATACCATATGATTCTTTCAGGGAACAGGGTGATTATAGAGTTGCTGATGGTTCTGATTCATCTGATATGAACACTAATTGTGATGCAATGAAAGAAACCGATTCAGCAAAGTTAGACTACGATTTTATGTGTTTTTTCCTTTCTAGCGACAGACTTGACCTCTACAAATCAATTGATTATCGGTGTGAAGATATGATATTAGGAGGGGATGGCCTTCTGTCTGAGGCTCAATGGCTTATTGATATCGGTCTTCAGCCAAACTCCAACTCTCCAACAAAAGCAATTGGTTACAGACAAGCCATGGATTACTTAATAGGATGCAGAGAACAAGGGGGTCAGAGTTCAGCTGGAGAATTTTACAGATTCTTGTCTGAATTTCAAAAAGCTTCAAGGAATTTCGCGAAACGACAGTTGACTTGGTTTCGTAATGAACATATTTACCATTGGCTTGACGCTTCTAAACCTGTGGAAACCGTTCTGAACTTCATTCATGATGCATACCACAATCAGAATGGAAATCTTTTTGTGCCCGAACACCTTAGAATGTCGAGAGATATTACTAATTCTCGAATAGCTGCTAAACTAAAGGCTTACCGCACCAGAAATAGGCATTTTGTGAACGGGGAAGATTGTTATCCTATTTTGGAATGGATACAGAAGACTCAGAAGTGA
Protein sequence

>Msa0227550

MCLYLYFSLYVYVECMVSLTIEFSEIYHQFTIYLYLLKWQSSGSPPSAFRIPYDSFREQGDYRVADGSDSSDMNTNCDAMKETDSAKLDYDFMCFFLSSDRLDLYKSIDYRCEDMILGGDGLLSEAQWLIDIGLQPNSNSPTKAIGYRQAMDYLIGCREQGGQSSAGEFYRFLSEFQKASRNFAKRQLTWFRNEHIYHWLDASKPVETVLNFIHDAYHNQNGNLFVPEHLRMSRDITNSRIAAKLKAYRTRNRHFVNGEDCYPILEWIQKTQK*