AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0294810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294810 MtrunA17_Chr2g0316331 96.581 234 8 0 40 273 216 449 6.75e-172 482
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294810 AT5G20040.1 56.957 230 97 1 40 269 220 447 1.57e-92 281
Msa0294810 AT5G20040.3 55.508 236 97 2 40 269 220 453 7.11e-90 275
Msa0294810 AT5G20040.2 55.652 230 96 2 40 269 220 443 6.67e-88 269

Find 124 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATTGTTATCCTATTT+TGG 0.138618 2_3:+46962347 Msa0294810:CDS
GCTTGAATTAGCTACATATT+TGG 0.174201 2_3:+46962424 Msa0294810:three_prime_UTR
GGATACCATATGATTCTTTC+AGG 0.190617 2_3:+46959797 Msa0294810:CDS
CAGGCCATGGATTACTTAAT+AGG 0.213819 2_3:+46960853 Msa0294810:intron
AGGATCCTGGTTTGCGTAAA+AGG 0.239175 2_3:-46962625 None:intergenic
CTCCGCTCTCTTACAATTTC+CGG 0.242499 2_3:+46957383 Msa0294810:five_prime_UTR
AGGAGTATTGCAGGTTAAAT+AGG 0.255838 2_3:+46962455 Msa0294810:three_prime_UTR
GAGAAGGTGATAGTTATTTC+TGG 0.257660 2_3:+46957448 Msa0294810:five_prime_UTR
AGCGGAGTTGCTCGGAAAAT+TGG 0.275218 2_3:-46957367 None:intergenic
ACTCCGTTGTTCATCATCTT+TGG 0.296832 2_3:-46957307 None:intergenic
TAAAATACAAGGTTCATATA+TGG 0.298492 2_3:+46959187 Msa0294810:intron
CTACATATTTGGAATTATAA+AGG 0.302459 2_3:+46962435 Msa0294810:three_prime_UTR
AGGCTTACCGCACCAGAAAT+AGG 0.314218 2_3:+46962223 Msa0294810:CDS
TTCTGTATCCATTCCAAAAT+AGG 0.315245 2_3:-46962360 None:intergenic
GTCGTGTTCCGATTGTTGTT+GGG 0.316625 2_3:+46958576 Msa0294810:five_prime_UTR
CGGTGTGAAGATATGATATT+AGG 0.344759 2_3:+46959979 Msa0294810:CDS
TAATATCTCTCGACATTCTA+AGG 0.349282 2_3:-46962173 None:intergenic
ATATGATTCTTTCAGGGAAC+AGG 0.349378 2_3:+46959804 Msa0294810:CDS
ATTTCTGGACCCACCGGTTC+CGG 0.350702 2_3:+46957463 Msa0294810:five_prime_UTR
GCTCGGAAAATTGGATGTTC+CGG 0.352035 2_3:-46957358 None:intergenic
GGTCGTGTTCCGATTGTTGT+TGG 0.354013 2_3:+46958575 Msa0294810:five_prime_UTR
ACTGCTATATGTTGGACCTT+TGG 0.358311 2_3:-46959331 None:intergenic
TGTTAGTGCCGATTCTGTTC+AGG 0.360188 2_3:+46957534 Msa0294810:five_prime_UTR
GAATTATAAAGGAGTATTGC+AGG 0.361214 2_3:+46962446 Msa0294810:three_prime_UTR
TTTCAAAAGATATAAATATA+TGG 0.365418 2_3:-46959740 None:intergenic
GATAACATCTCAAGCTTGTA+TGG 0.369477 2_3:+46959240 Msa0294810:five_prime_UTR
CTCGGAAAATTGGATGTTCC+GGG 0.370881 2_3:-46957357 None:intergenic
TGAATGATTGGTACCGATTA+CGG 0.374646 2_3:+46959353 Msa0294810:five_prime_UTR
CTCGACATTCTAAGGTGTTC+GGG 0.375668 2_3:-46962165 None:intergenic
ACTAACCTTTACCAAAAGAT+TGG 0.381185 2_3:+46959458 Msa0294810:five_prime_UTR
TCTCTAGACTACGCCGTAAT+CGG 0.385182 2_3:-46959366 None:intergenic
TATTTATCAGATTATTCTGT+TGG 0.385240 2_3:+46958503 Msa0294810:intron
TTTGTTGGAGAGTTGGAGTT+TGG 0.386503 2_3:-46960230 None:intergenic
GTAGTCTAACTTTGCTGAAT+CGG 0.387153 2_3:-46959896 None:intergenic
TTTCGTCACTGCATCATTAA+CGG 0.390206 2_3:+46957414 Msa0294810:five_prime_UTR
GCAGAGGCTTTAGGCACATC+TGG 0.392567 2_3:-46959214 None:intergenic
TCTACAAATCAATTGATTAT+CGG 0.397595 2_3:+46959959 Msa0294810:CDS
GTTATCTCTGCAGAGGCTTT+AGG 0.398015 2_3:-46959223 None:intergenic
TCTCGACATTCTAAGGTGTT+CGG 0.404470 2_3:-46962166 None:intergenic
CCGCACGTGCCTCCGCCTCC+CGG 0.415823 2_3:+46957339 Msa0294810:five_prime_UTR
AACATATAGCAGTGAATGAT+TGG 0.419947 2_3:+46959341 Msa0294810:five_prime_UTR
GCCTTCTGTCTGAGGCTCAA+TGG 0.420564 2_3:+46960186 Msa0294810:CDS
GCGTAGTCTAGAGATTATTA+AGG 0.424856 2_3:+46959375 Msa0294810:five_prime_UTR
AACTCTCCAACAAAAGCAAT+TGG 0.427647 2_3:+46960239 Msa0294810:CDS
TTAGGAAGTGCCGCATCATC+TGG 0.429156 2_3:+46958328 Msa0294810:intron
TCTTTGATTGCAGGAGGGGA+TGG 0.439720 2_3:+46960164 Msa0294810:intron
GTATGTATATGTGGAATGTA+TGG 0.442418 2_3:+46959675 Msa0294810:CDS
GCTCAATGGCTTATTGATAT+CGG 0.444199 2_3:+46960200 Msa0294810:CDS
CATTGCGAGACGGCTCTTAC+CGG 0.451232 2_3:-46957482 None:intergenic
ATGAGAAAGACAGGCAAGAA+TGG 0.457909 2_3:-46959511 None:intergenic
ACCTTTCTATCATTTAATGA+AGG 0.458751 2_3:-46958115 None:intergenic
GAACTCGCTAAACGCCTCAA+TGG 0.461709 2_3:+46957505 Msa0294810:five_prime_UTR
AAAGATTTCCATTCTGATTG+TGG 0.464882 2_3:-46962137 None:intergenic
GATACCATATGATTCTTTCA+GGG 0.466118 2_3:+46959798 Msa0294810:CDS
TCGCGAAACGACAGTTGACT+TGG 0.470955 2_3:+46961573 Msa0294810:CDS
AAATTGGATGTTCCGGGAGG+CGG 0.480885 2_3:-46957351 None:intergenic
AATACCTCTAAGTTCTTGAC+TGG 0.482470 2_3:+46959433 Msa0294810:five_prime_UTR
TCGTGTTCCGATTGTTGTTG+GGG 0.487543 2_3:+46958577 Msa0294810:five_prime_UTR
GGTCAAGTCTGTCGCTAGAA+AGG 0.487687 2_3:-46959936 None:intergenic
TTGGATGTTCCGGGAGGCGG+AGG 0.491724 2_3:-46957348 None:intergenic
GTATCCAGTCAAGAACTTAG+AGG 0.492473 2_3:-46959437 None:intergenic
CACTAACAATTTCGCCATTG+AGG 0.492621 2_3:-46957519 None:intergenic
TCTACATAAAAGTCAACAAA+AGG 0.498727 2_3:-46962511 None:intergenic
AATTCATACCTGAACAGAAT+CGG 0.498815 2_3:-46957542 None:intergenic
AGGGGATGGCCTTCTGTCTG+AGG 0.502583 2_3:+46960178 Msa0294810:CDS
ATTTATCAGATTATTCTGTT+GGG 0.508010 2_3:+46958504 Msa0294810:intron
ATAATGAAAATGAGAAAGAC+AGG 0.512030 2_3:-46959520 None:intergenic
TATGATGACATCAAGGATCC+TGG 0.512314 2_3:-46962638 None:intergenic
TCGAATAGCTGCTAAACTAA+AGG 0.513714 2_3:+46962203 Msa0294810:CDS
GCCTTCATTAAATGATAGAA+AGG 0.513937 2_3:+46958114 Msa0294810:five_prime_UTR
ATATATTTCAGAAAATTCAA+TGG 0.514366 2_3:-46959707 None:intergenic
GTAATGAACATATTTACCAT+TGG 0.516604 2_3:+46961600 Msa0294810:CDS
ACGGCTCTTACCGGAACCGG+TGG 0.523860 2_3:-46957473 None:intergenic
TGTTCCCTGAAAGAATCATA+TGG 0.526900 2_3:-46959802 None:intergenic
TACAGAAGACTCAGAAGTGA+AGG 0.532598 2_3:+46962376 Msa0294810:CDS
AATCATTCACTGCTATATGT+TGG 0.534947 2_3:-46959339 None:intergenic
AAGACTCAGAAGTGAAGGGA+TGG 0.547384 2_3:+46962381 Msa0294810:exon
GATGCATACCACAATCAGAA+TGG 0.547399 2_3:+46962129 Msa0294810:CDS
GAGACGGCTCTTACCGGAAC+CGG 0.549004 2_3:-46957476 None:intergenic
TGTAAGAGAGCGGAGTTGCT+CGG 0.549418 2_3:-46957375 None:intergenic
TTAATAGGATGCAGAGAACA+AGG 0.553374 2_3:+46960868 Msa0294810:CDS
AATTACAGAGAAATGACGAC+TGG 0.556833 2_3:+46959272 Msa0294810:five_prime_UTR
CAAAAGGATGTTAACAAGCA+AGG 0.558369 2_3:-46962495 None:intergenic
GTGTATAAGGGTCTTGATGT+TGG 0.558699 2_3:+46958082 Msa0294810:five_prime_UTR
GCCATTGAGCCTCAGACAGA+AGG 0.563993 2_3:-46960187 None:intergenic
CGGTAAGAGCCGTCTCGCAA+TGG 0.565346 2_3:+46957483 Msa0294810:five_prime_UTR
GACATACTTCATCCATCTGA+AGG 0.571668 2_3:+46958353 Msa0294810:five_prime_UTR
TGAACATTATGATGACATCA+AGG 0.571904 2_3:-46962645 None:intergenic
GCATCCTATTAAGTAATCCA+TGG 0.573382 2_3:-46960857 None:intergenic
ATAGTTATTTCTGGACCCAC+CGG 0.573440 2_3:+46957457 Msa0294810:five_prime_UTR
GATAATCAATTGATTTGTAG+AGG 0.576340 2_3:-46959957 None:intergenic
CCGGGAGGCGGAGGCACGTG+CGG 0.577791 2_3:-46957339 None:intergenic
GTTTAGAAGCGTCAAGCCAA+TGG 0.583750 2_3:-46961616 None:intergenic
GCACTGGACTGTATTTAAGA+TGG 0.588035 2_3:+46958600 Msa0294810:five_prime_UTR
CTGGGAAGCTGCTGTACAGT+TGG 0.592385 2_3:+46959291 Msa0294810:five_prime_UTR
GGAAGCTGCTGTACAGTTGG+TGG 0.596218 2_3:+46959294 Msa0294810:five_prime_UTR
AAAGAAAACAGACCTTCAGA+TGG 0.597193 2_3:-46958365 None:intergenic
CAAAATACCTATTTCTGGTG+CGG 0.602995 2_3:-46962230 None:intergenic
TATGGTATCCGAAAAGCAGA+AGG 0.603536 2_3:-46959784 None:intergenic
AATAGGATGCAGAGAACAAG+GGG 0.606555 2_3:+46960870 Msa0294810:CDS
TAGCGAGTTCCATTGCGAGA+CGG 0.606605 2_3:-46957492 None:intergenic
TTGAGATGTTATCTCTGCAG+AGG 0.613063 2_3:-46959230 None:intergenic
TAATAGGATGCAGAGAACAA+GGG 0.615293 2_3:+46960869 Msa0294810:CDS
ACATTGAATAAATAAATGCA+TGG 0.617813 2_3:-46959565 None:intergenic
GGTGATTATAGAGTTGCTGA+TGG 0.618618 2_3:+46959826 Msa0294810:CDS
AACGGAGAAGAAGAAAGAGA+AGG 0.621988 2_3:+46957432 Msa0294810:five_prime_UTR
GCTTGACGCTTCTAAACCTG+TGG 0.623923 2_3:+46961622 Msa0294810:CDS
TATGATTCTTTCAGGGAACA+GGG 0.627524 2_3:+46959805 Msa0294810:CDS
GTACAGTTGGTGGTAAAAGC+AGG 0.629027 2_3:+46959304 Msa0294810:five_prime_UTR
GGTAAAAGCAGGTGATCCAA+AGG 0.631846 2_3:+46959315 Msa0294810:five_prime_UTR
CGTGTTCCGATTGTTGTTGG+GGG 0.635484 2_3:+46958578 Msa0294810:five_prime_UTR
ATCCTGGTTTGCGTAAAAGG+AGG 0.645026 2_3:-46962622 None:intergenic
ACAGAAGACTCAGAAGTGAA+GGG 0.645454 2_3:+46962377 Msa0294810:exon
CGCCGGAAATTGTAAGAGAG+CGG 0.646103 2_3:-46957385 None:intergenic
ATGCATTTATTTATTCAATG+TGG 0.655204 2_3:+46959567 Msa0294810:five_prime_UTR
ATCATGAATGAAGTTCAGAA+CGG 0.659921 2_3:-46962109 None:intergenic
ATTACAGAGAAATGACGACT+GGG 0.664187 2_3:+46959273 Msa0294810:five_prime_UTR
CGGCTCTTACCGGAACCGGT+GGG 0.678594 2_3:-46957472 None:intergenic
GGTATCCGAAAAGCAGAAGG+AGG 0.686824 2_3:-46959781 None:intergenic
AGTATGTCAACCAGATGATG+CGG 0.688771 2_3:-46958338 None:intergenic
GGAAAATTGGATGTTCCGGG+AGG 0.707103 2_3:-46957354 None:intergenic
AGTCCAAAGATGATGAACAA+CGG 0.709326 2_3:+46957304 Msa0294810:five_prime_UTR
ACAAGATCTATTCTTGACAA+CGG 0.716891 2_3:+46958554 Msa0294810:five_prime_UTR
ATAGGATGCAGAGAACAAGG+GGG 0.808450 2_3:+46960871 Msa0294810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAAGTGATAAAT+CGG + chr2_3:46957876-46957895 Msa0294810:intron 10.0%
!! TTTCAAAAGATATAAATATA+TGG - chr2_3:46959743-46959762 None:intergenic 10.0%
!!! TATATTTATATCTTTTGAAA+TGG + chr2_3:46959743-46959762 Msa0294810:CDS 10.0%
!! AAAATTCTTATAAGTAAAAA+AGG - chr2_3:46961828-46961847 None:intergenic 10.0%
!!! AATTTTTAGAACTATTTTAA+TGG + chr2_3:46961842-46961861 Msa0294810:intron 10.0%
!!! TTTTGTTTTGTTTTGTTTTT+TGG + chr2_3:46958305-46958324 Msa0294810:intron 15.0%
!!! AATTAGTTTCAAATTACAAT+TGG - chr2_3:46958481-46958500 None:intergenic 15.0%
!! TTATACAATAATATAGTATC+AGG + chr2_3:46958838-46958857 Msa0294810:intron 15.0%
!! TATACAATAATATAGTATCA+GGG + chr2_3:46958839-46958858 Msa0294810:intron 15.0%
!! ATATATTTCAGAAAATTCAA+TGG - chr2_3:46959710-46959729 None:intergenic 15.0%
!! ATTTAATAAATTCCACTAAA+TGG - chr2_3:46960537-46960556 None:intergenic 15.0%
!! TTCATGTATACTTTAAATTA+TGG + chr2_3:46960685-46960704 Msa0294810:intron 15.0%
!!! TTTTGTTTTACATAAGATAA+TGG + chr2_3:46960959-46960978 Msa0294810:intron 15.0%
!!! TAACTATTACTTCTAAAATT+GGG - chr2_3:46961761-46961780 None:intergenic 15.0%
!!! TTAACTATTACTTCTAAAAT+TGG - chr2_3:46961762-46961781 None:intergenic 15.0%
!!! TTTTAGAAGTAATAGTTAAA+TGG + chr2_3:46961763-46961782 Msa0294810:intron 15.0%
!!! TAATAATTGTTTCTATATGA+AGG + chr2_3:46962310-46962329 Msa0294810:intron 15.0%
!!! ATTCTGCTCTTTTTTTTTTT+GGG - chr2_3:46957637-46957656 None:intergenic 20.0%
!!! AATTCTGCTCTTTTTTTTTT+TGG - chr2_3:46957638-46957657 None:intergenic 20.0%
!!! ACGTATAACTCTTTTTTTTT+TGG - chr2_3:46958000-46958019 None:intergenic 20.0%
!!! GATGTTTTCTTTATTCAATA+CGG + chr2_3:46958038-46958057 Msa0294810:intron 20.0%
!!! TTTTGTTTTGTTTTTTGGTT+AGG + chr2_3:46958310-46958329 Msa0294810:intron 20.0%
!! TATTTATCAGATTATTCTGT+TGG + chr2_3:46958503-46958522 Msa0294810:intron 20.0%
!! ATTTATCAGATTATTCTGTT+GGG + chr2_3:46958504-46958523 Msa0294810:intron 20.0%
!!! TCTTTGATGTTTAAAATACA+AGG + chr2_3:46959176-46959195 Msa0294810:intron 20.0%
!! TAAAATACAAGGTTCATATA+TGG + chr2_3:46959187-46959206 Msa0294810:intron 20.0%
!! ACATTGAATAAATAAATGCA+TGG - chr2_3:46959568-46959587 None:intergenic 20.0%
!! ATGCATTTATTTATTCAATG+TGG + chr2_3:46959567-46959586 Msa0294810:five_prime_UTR 20.0%
!! ATACATACAAAGAAAAATAC+AGG - chr2_3:46959663-46959682 None:intergenic 20.0%
!!! TTTTTCTTTGTATGTATATG+TGG + chr2_3:46959666-46959685 Msa0294810:CDS 20.0%
!! TCTACAAATCAATTGATTAT+CGG + chr2_3:46959959-46959978 Msa0294810:CDS 20.0%
!! TATGATATTAGGTAATTAAC+TGG + chr2_3:46959990-46960009 Msa0294810:intron 20.0%
!! CTCAAATAAAGAAATAGATT+TGG + chr2_3:46960331-46960350 Msa0294810:intron 20.0%
!! CATGCTTTAATAAATATCAT+TGG + chr2_3:46960382-46960401 Msa0294810:intron 20.0%
!! TATTTATTCTTTCCATTTAG+TGG + chr2_3:46960522-46960541 Msa0294810:intron 20.0%
!!! TTTAAAGTATACATGAACAT+GGG - chr2_3:46960682-46960701 None:intergenic 20.0%
!!! ATTTAAAGTATACATGAACA+TGG - chr2_3:46960683-46960702 None:intergenic 20.0%
!! TTTAAATTATGGTTGCAATT+CGG + chr2_3:46960696-46960715 Msa0294810:intron 20.0%
!! CAAAAATGCAAATATCATAT+AGG - chr2_3:46960780-46960799 None:intergenic 20.0%
!! TTTGATATAAATAGTGAGAA+TGG + chr2_3:46960796-46960815 Msa0294810:intron 20.0%
!!! GTGTTTTTTTTTTATGTTCA+TGG - chr2_3:46961051-46961070 None:intergenic 20.0%
!!! TTTTCTTTTAAAGAAAAAGC+TGG + chr2_3:46961363-46961382 Msa0294810:intron 20.0%
!! TATACATAAGAAATTAGATG+AGG - chr2_3:46961697-46961716 None:intergenic 20.0%
!! ATCTAATTTCTTATGTATAC+TGG + chr2_3:46961698-46961717 Msa0294810:intron 20.0%
!! GCATAAGCTTAAAAAAATTA+CGG - chr2_3:46962059-46962078 None:intergenic 20.0%
!! AAAAACAAAATACCTATTTC+TGG - chr2_3:46962238-46962257 None:intergenic 20.0%
!!! CTACATATTTGGAATTATAA+AGG + chr2_3:46962435-46962454 Msa0294810:three_prime_UTR 20.0%
!! CAAGTATTTCAAGTGATTTA+AGG + chr2_3:46957726-46957745 Msa0294810:intron 25.0%
!! TGTGAATTTTGTATAATCGT+AGG + chr2_3:46957795-46957814 Msa0294810:intron 25.0%
! AAAAAAAAACCTCCTAATCA+AGG - chr2_3:46957857-46957876 None:intergenic 25.0%
! GCAATTAATTACTATGTGTA+TGG + chr2_3:46957936-46957955 Msa0294810:intron 25.0%
!!! CTTTTTTTACAGGTGTATAA+GGG + chr2_3:46958070-46958089 Msa0294810:intron 25.0%
! ACCTTTCTATCATTTAATGA+AGG - chr2_3:46958118-46958137 None:intergenic 25.0%
! ATTTAGTTGCAACATAGAAA+TGG + chr2_3:46958252-46958271 Msa0294810:intron 25.0%
! TTTAGTTGCAACATAGAAAT+GGG + chr2_3:46958253-46958272 Msa0294810:intron 25.0%
! TTACAATTGGCCAAAATAAA+AGG - chr2_3:46958468-46958487 None:intergenic 25.0%
! ACAAAGTAGGTAATTGAAAA+AGG - chr2_3:46958630-46958649 None:intergenic 25.0%
! GAATATGTAGTTAACAAAGT+AGG - chr2_3:46958643-46958662 None:intergenic 25.0%
! ATTTCCTTATTGTGAAATAG+TGG + chr2_3:46958673-46958692 Msa0294810:intron 25.0%
!! AAGAGAGCATAAATAGTAAA+TGG + chr2_3:46958724-46958743 Msa0294810:intron 25.0%
! TATACTTTGTAGGTATACTA+TGG + chr2_3:46958929-46958948 Msa0294810:intron 25.0%
!! TTTATCCAATCTTTTGGTAA+AGG - chr2_3:46959466-46959485 None:intergenic 25.0%
! ATAATGAAAATGAGAAAGAC+AGG - chr2_3:46959523-46959542 None:intergenic 25.0%
!!! GATAATCAATTGATTTGTAG+AGG - chr2_3:46959960-46959979 None:intergenic 25.0%
! TCTAATAGCAATAAATCTCT+TGG + chr2_3:46960138-46960157 Msa0294810:intron 25.0%
! GATATTTATTAAAGCATGTC+TGG - chr2_3:46960380-46960399 None:intergenic 25.0%
!! TTAACATTCTCCCAATTTTT+AGG + chr2_3:46960406-46960425 Msa0294810:intron 25.0%
! TCCAAAAGCTTAAATAAACA+GGG - chr2_3:46960432-46960451 None:intergenic 25.0%
! TTCCAAAAGCTTAAATAAAC+AGG - chr2_3:46960433-46960452 None:intergenic 25.0%
! TATGTAAAAATACAGCATGT+AGG - chr2_3:46960755-46960774 None:intergenic 25.0%
!! GCATTTTCTAATTACAACAA+TGG - chr2_3:46961321-46961340 None:intergenic 25.0%
! GTAATGAACATATTTACCAT+TGG + chr2_3:46961600-46961619 Msa0294810:CDS 25.0%
! TTCTTATAAGTAAAAAAGGC+AGG - chr2_3:46961824-46961843 None:intergenic 25.0%
!!! GGTATTTTGTTTTTAGTATC+TGG + chr2_3:46962244-46962263 Msa0294810:intron 25.0%
!!! ATTGTTATCCTATTTTGGAA+TGG + chr2_3:46962352-46962371 Msa0294810:CDS 25.0%
! TCTACATAAAAGTCAACAAA+AGG - chr2_3:46962514-46962533 None:intergenic 25.0%
AATTCATACCTGAACAGAAT+CGG - chr2_3:46957545-46957564 None:intergenic 30.0%
TAATCAAGGTAGCTAAAATC+AGG - chr2_3:46957843-46957862 None:intergenic 30.0%
!!! TGATTTTAGCTACCTTGATT+AGG + chr2_3:46957842-46957861 Msa0294810:intron 30.0%
AATCGGTTAAGAATGATATG+TGG + chr2_3:46957893-46957912 Msa0294810:intron 30.0%
AAAAGAGTTATACGTTGCAA+TGG + chr2_3:46958005-46958024 Msa0294810:intron 30.0%
!!! GCTTTTTTTACAGGTGTATA+AGG + chr2_3:46958069-46958088 Msa0294810:intron 30.0%
GCCTTCATTAAATGATAGAA+AGG + chr2_3:46958114-46958133 Msa0294810:five_prime_UTR 30.0%
!! TTTTCAGAGGCCTTTTATTT+TGG + chr2_3:46958455-46958474 Msa0294810:intron 30.0%
ACAAGATCTATTCTTGACAA+CGG + chr2_3:46958554-46958573 Msa0294810:five_prime_UTR 30.0%
TGTACAGAAGACAAATCAAT+TGG - chr2_3:46959009-46959028 None:intergenic 30.0%
GTGATAATTCACTAAAACAG+TGG - chr2_3:46959071-46959090 None:intergenic 30.0%
TACTTATAGACCAGTTTATG+TGG + chr2_3:46959131-46959150 Msa0294810:intron 30.0%
AATCATTCACTGCTATATGT+TGG - chr2_3:46959342-46959361 None:intergenic 30.0%
AACATATAGCAGTGAATGAT+TGG + chr2_3:46959341-46959360 Msa0294810:five_prime_UTR 30.0%
ACTAACCTTTACCAAAAGAT+TGG + chr2_3:46959458-46959477 Msa0294810:five_prime_UTR 30.0%
!! GAGAGTTTTATCCAATCTTT+TGG - chr2_3:46959472-46959491 None:intergenic 30.0%
GTATGTATATGTGGAATGTA+TGG + chr2_3:46959675-46959694 Msa0294810:CDS 30.0%
GATACCATATGATTCTTTCA+GGG + chr2_3:46959798-46959817 Msa0294810:CDS 30.0%
ATAAACAGGGCCTAAAAATT+GGG - chr2_3:46960419-46960438 None:intergenic 30.0%
AATAAACAGGGCCTAAAAAT+TGG - chr2_3:46960420-46960439 None:intergenic 30.0%
CTGAATTTCAAAAAGCTTCA+AGG + chr2_3:46960929-46960948 Msa0294810:CDS 30.0%
CATAATTTAGCCAATGTCAA+GGG - chr2_3:46960987-46961006 None:intergenic 30.0%
ACATAATTTAGCCAATGTCA+AGG - chr2_3:46960988-46961007 None:intergenic 30.0%
ACAACTTAAAGTATGCTATG+TGG + chr2_3:46961008-46961027 Msa0294810:intron 30.0%
CAACTTAAAGTATGCTATGT+GGG + chr2_3:46961009-46961028 Msa0294810:intron 30.0%
TGTAATTAGAAAATGCATGC+TGG + chr2_3:46961325-46961344 Msa0294810:intron 30.0%
GTAATTAGAAAATGCATGCT+GGG + chr2_3:46961326-46961345 Msa0294810:intron 30.0%
!!! TTACTTGATTTGGTTTTTGC+AGG + chr2_3:46961546-46961565 Msa0294810:intron 30.0%
AGATTCAATCATTATACCAC+AGG - chr2_3:46961641-46961660 None:intergenic 30.0%
GGTATAGTTGTTAGTATCTA+GGG - chr2_3:46961803-46961822 None:intergenic 30.0%
AGGTATAGTTGTTAGTATCT+AGG - chr2_3:46961804-46961823 None:intergenic 30.0%
ACGTGCTTTAACATACTTTA+TGG + chr2_3:46961920-46961939 Msa0294810:intron 30.0%
! ACTTTATGGAAGTCCTTTTA+TGG + chr2_3:46961934-46961953 Msa0294810:intron 30.0%
TGCATGTTGTTGTATGTAAT+TGG + chr2_3:46962003-46962022 Msa0294810:intron 30.0%
ATGTTGTTGTATGTAATTGG+AGG + chr2_3:46962006-46962025 Msa0294810:intron 30.0%
TATGATGAACAACTTATTCC+AGG + chr2_3:46962083-46962102 Msa0294810:intron 30.0%
ATCATGAATGAAGTTCAGAA+CGG - chr2_3:46962112-46962131 None:intergenic 30.0%
AAAGATTTCCATTCTGATTG+TGG - chr2_3:46962140-46962159 None:intergenic 30.0%
TAATATCTCTCGACATTCTA+AGG - chr2_3:46962176-46962195 None:intergenic 30.0%
!!! ATATGAAGGCATTTTGTGAA+CGG + chr2_3:46962324-46962343 Msa0294810:intron 30.0%
! GGAAGATTGTTATCCTATTT+TGG + chr2_3:46962347-46962366 Msa0294810:CDS 30.0%
TTCTGTATCCATTCCAAAAT+AGG - chr2_3:46962363-46962382 None:intergenic 30.0%
GCTTGAATTAGCTACATATT+TGG + chr2_3:46962424-46962443 Msa0294810:three_prime_UTR 30.0%
!! GAATTATAAAGGAGTATTGC+AGG + chr2_3:46962446-46962465 Msa0294810:three_prime_UTR 30.0%
AGTCCAAAGATGATGAACAA+CGG + chr2_3:46957304-46957323 Msa0294810:five_prime_UTR 35.0%
ATGATGCAGTGACGAAAAAA+CGG - chr2_3:46957411-46957430 None:intergenic 35.0%
TTTCGTCACTGCATCATTAA+CGG + chr2_3:46957414-46957433 Msa0294810:five_prime_UTR 35.0%
! GAGAAGGTGATAGTTATTTC+TGG + chr2_3:46957448-46957467 Msa0294810:five_prime_UTR 35.0%
GAGCAGAATTTGAACTAACA+AGG + chr2_3:46957648-46957667 Msa0294810:intron 35.0%
AAGGTAGCTAAAATCAGGAA+GGG - chr2_3:46957838-46957857 None:intergenic 35.0%
!! TTTTAGCTACCTTGATTAGG+AGG + chr2_3:46957845-46957864 Msa0294810:intron 35.0%
TACACCTGTAAAAAAAGCCA+CGG - chr2_3:46958067-46958086 None:intergenic 35.0%
AAAGAAAACAGACCTTCAGA+TGG - chr2_3:46958368-46958387 None:intergenic 35.0%
ACAGCCACTATTTCACAATA+AGG - chr2_3:46958680-46958699 None:intergenic 35.0%
ACTTGCGGAAATAAGAAAAG+TGG - chr2_3:46958753-46958772 None:intergenic 35.0%
ATGACTTCATCAGTAACTTG+CGG - chr2_3:46958768-46958787 None:intergenic 35.0%
GGGAAAAAGTAATGCAGAAT+TGG + chr2_3:46958859-46958878 Msa0294810:intron 35.0%
! AAGTAATGCAGAATTGGTTC+TGG + chr2_3:46958865-46958884 Msa0294810:intron 35.0%
AGGATGTGCATATACTTTGT+AGG + chr2_3:46958919-46958938 Msa0294810:intron 35.0%
! CTATGGTGATTTACTAGTCT+TGG + chr2_3:46958946-46958965 Msa0294810:intron 35.0%
GGTATATACTCCACATAAAC+TGG - chr2_3:46959144-46959163 None:intergenic 35.0%
GATAACATCTCAAGCTTGTA+TGG + chr2_3:46959240-46959259 Msa0294810:five_prime_UTR 35.0%
AATTACAGAGAAATGACGAC+TGG + chr2_3:46959272-46959291 Msa0294810:five_prime_UTR 35.0%
ATTACAGAGAAATGACGACT+GGG + chr2_3:46959273-46959292 Msa0294810:five_prime_UTR 35.0%
!! TGAATGATTGGTACCGATTA+CGG + chr2_3:46959353-46959372 Msa0294810:five_prime_UTR 35.0%
GCGTAGTCTAGAGATTATTA+AGG + chr2_3:46959375-46959394 Msa0294810:five_prime_UTR 35.0%
AATACCTCTAAGTTCTTGAC+TGG + chr2_3:46959433-46959452 Msa0294810:five_prime_UTR 35.0%
GGATACCATATGATTCTTTC+AGG + chr2_3:46959797-46959816 Msa0294810:CDS 35.0%
TGTTCCCTGAAAGAATCATA+TGG - chr2_3:46959805-46959824 None:intergenic 35.0%
ATATGATTCTTTCAGGGAAC+AGG + chr2_3:46959804-46959823 Msa0294810:CDS 35.0%
TATGATTCTTTCAGGGAACA+GGG + chr2_3:46959805-46959824 Msa0294810:CDS 35.0%
GTAGTCTAACTTTGCTGAAT+CGG - chr2_3:46959899-46959918 None:intergenic 35.0%
CGGTGTGAAGATATGATATT+AGG + chr2_3:46959979-46959998 Msa0294810:CDS 35.0%
GCTCAATGGCTTATTGATAT+CGG + chr2_3:46960200-46960219 Msa0294810:CDS 35.0%
!! AATTGCTTTTGTTGGAGAGT+TGG - chr2_3:46960240-46960259 None:intergenic 35.0%
AACTCTCCAACAAAAGCAAT+TGG + chr2_3:46960239-46960258 Msa0294810:CDS 35.0%
!! CTGTAACCAATTGCTTTTGT+TGG - chr2_3:46960248-46960267 None:intergenic 35.0%
! GCCCTGTTTATTTAAGCTTT+TGG + chr2_3:46960428-46960447 Msa0294810:intron 35.0%
! AGAGTGGCTTCTGAAAATAA+CGG - chr2_3:46960590-46960609 None:intergenic 35.0%
AGACTTGTAATTGTTGAGAG+TGG - chr2_3:46960606-46960625 None:intergenic 35.0%
GCATCCTATTAAGTAATCCA+TGG - chr2_3:46960860-46960879 None:intergenic 35.0%
TTAATAGGATGCAGAGAACA+AGG + chr2_3:46960868-46960887 Msa0294810:CDS 35.0%
TAATAGGATGCAGAGAACAA+GGG + chr2_3:46960869-46960888 Msa0294810:CDS 35.0%
ACAGATGTTGTCAGAATACT+AGG - chr2_3:46961077-46961096 None:intergenic 35.0%
AGTATTCTGACAACATCTGT+TGG + chr2_3:46961077-46961096 Msa0294810:intron 35.0%
GTATTCTGACAACATCTGTT+GGG + chr2_3:46961078-46961097 Msa0294810:intron 35.0%
CCTTGACTTAATACATACCA+AGG - chr2_3:46961211-46961230 None:intergenic 35.0%
CCTTGGTATGTATTAAGTCA+AGG + chr2_3:46961208-46961227 Msa0294810:intron 35.0%
GGTATGTATTAAGTCAAGGA+TGG + chr2_3:46961212-46961231 Msa0294810:intron 35.0%
CTTTCTCAACTCAGTTAAGT+TGG + chr2_3:46961288-46961307 Msa0294810:intron 35.0%
TAACGTCATGATGCATAGTT+GGG - chr2_3:46961406-46961425 None:intergenic 35.0%
ATTTGGCAATGCTCTTGATT+TGG + chr2_3:46961477-46961496 Msa0294810:intron 35.0%
GTTTCGTCTCTTACTTGATT+TGG + chr2_3:46961536-46961555 Msa0294810:intron 35.0%
CACTACTTAGGTTCCATAAA+AGG - chr2_3:46961950-46961969 None:intergenic 35.0%
! CTTTTATGGAACCTAAGTAG+TGG + chr2_3:46961948-46961967 Msa0294810:intron 35.0%
GCATAAGATAACCACTACTT+AGG - chr2_3:46961962-46961981 None:intergenic 35.0%
TCGAATAGCTGCTAAACTAA+AGG + chr2_3:46962203-46962222 Msa0294810:CDS 35.0%
!! CAAAATACCTATTTCTGGTG+CGG - chr2_3:46962233-46962252 None:intergenic 35.0%
!!! TATGAAGGCATTTTGTGAAC+GGG + chr2_3:46962325-46962344 Msa0294810:intron 35.0%
!! AGGAGTATTGCAGGTTAAAT+AGG + chr2_3:46962455-46962474 Msa0294810:three_prime_UTR 35.0%
CAAAAGGATGTTAACAAGCA+AGG - chr2_3:46962498-46962517 None:intergenic 35.0%
ACTCCGTTGTTCATCATCTT+TGG - chr2_3:46957310-46957329 None:intergenic 40.0%
AACGGAGAAGAAGAAAGAGA+AGG + chr2_3:46957432-46957451 Msa0294810:five_prime_UTR 40.0%
!! ATAGTTATTTCTGGACCCAC+CGG + chr2_3:46957457-46957476 Msa0294810:five_prime_UTR 40.0%
CACTAACAATTTCGCCATTG+AGG - chr2_3:46957522-46957541 None:intergenic 40.0%
AGGTAGCTAAAATCAGGAAG+GGG - chr2_3:46957837-46957856 None:intergenic 40.0%
CAAGGTAGCTAAAATCAGGA+AGG - chr2_3:46957839-46957858 None:intergenic 40.0%
TTTATTCAATACGGCTTCCG+TGG + chr2_3:46958047-46958066 Msa0294810:intron 40.0%
GTGTATAAGGGTCTTGATGT+TGG + chr2_3:46958082-46958101 Msa0294810:five_prime_UTR 40.0%
ACAGACAATCCAAGTCACAA+TGG - chr2_3:46958212-46958231 None:intergenic 40.0%
AGTATGTCAACCAGATGATG+CGG - chr2_3:46958341-46958360 None:intergenic 40.0%
GACATACTTCATCCATCTGA+AGG + chr2_3:46958353-46958372 Msa0294810:five_prime_UTR 40.0%
ACGATGGAGAAATGTGTATG+AGG - chr2_3:46958431-46958450 None:intergenic 40.0%
CATACACATTTCTCCATCGT+TGG + chr2_3:46958431-46958450 Msa0294810:intron 40.0%
!!! TTCTGTTGGGCAGTTTTTTG+AGG + chr2_3:46958517-46958536 Msa0294810:five_prime_UTR 40.0%
GCACTGGACTGTATTTAAGA+TGG + chr2_3:46958600-46958619 Msa0294810:five_prime_UTR 40.0%
! TGCATGACTTGCGTAATTGA+AGG + chr2_3:46958899-46958918 Msa0294810:intron 40.0%
! AATACACGATCTGAAGCTAG+AGG + chr2_3:46958982-46959001 Msa0294810:intron 40.0%
CATCAAAGAACAGAGCTCAT+AGG - chr2_3:46959165-46959184 None:intergenic 40.0%
TTGAGATGTTATCTCTGCAG+AGG - chr2_3:46959233-46959252 None:intergenic 40.0%
ACTGCTATATGTTGGACCTT+TGG - chr2_3:46959334-46959353 None:intergenic 40.0%
GTATCCAGTCAAGAACTTAG+AGG - chr2_3:46959440-46959459 None:intergenic 40.0%
ATGAGAAAGACAGGCAAGAA+TGG - chr2_3:46959514-46959533 None:intergenic 40.0%
!!! CTTTTGAAATGGCAGTCTAG+TGG + chr2_3:46959754-46959773 Msa0294810:CDS 40.0%
TATGGTATCCGAAAAGCAGA+AGG - chr2_3:46959787-46959806 None:intergenic 40.0%
GGTGATTATAGAGTTGCTGA+TGG + chr2_3:46959826-46959845 Msa0294810:CDS 40.0%
! TCTTGGTTCTCTTTGATTGC+AGG + chr2_3:46960155-46960174 Msa0294810:intron 40.0%
TTTGTTGGAGAGTTGGAGTT+TGG - chr2_3:46960233-46960252 None:intergenic 40.0%
GCTTGTGATTCACCAATTTC+AGG + chr2_3:46960834-46960853 Msa0294810:intron 40.0%
AGTAATCCATGGCCTGAAAT+TGG - chr2_3:46960849-46960868 None:intergenic 40.0%
! CAGGCCATGGATTACTTAAT+AGG + chr2_3:46960853-46960872 Msa0294810:intron 40.0%
AATAGGATGCAGAGAACAAG+GGG + chr2_3:46960870-46960889 Msa0294810:CDS 40.0%
! GATAATGGTACCCTTGACAT+TGG + chr2_3:46960974-46960993 Msa0294810:intron 40.0%
!! TTGGGCAAGTTGATTGGTTA+TGG + chr2_3:46961096-46961115 Msa0294810:intron 40.0%
! AAGCTTTTCATGCTCAACCT+TGG + chr2_3:46961191-46961210 Msa0294810:intron 40.0%
TTAGAAAATGCATGCTGGGA+TGG + chr2_3:46961330-46961349 Msa0294810:intron 40.0%
TAGAAAATGCATGCTGGGAT+GGG + chr2_3:46961331-46961350 Msa0294810:intron 40.0%
CTAACGTCATGATGCATAGT+TGG - chr2_3:46961407-46961426 None:intergenic 40.0%
GTTCACAACCAGCAAAACAT+GGG - chr2_3:46961436-46961455 None:intergenic 40.0%
TGTTCACAACCAGCAAAACA+TGG - chr2_3:46961437-46961456 None:intergenic 40.0%
GTTGTGAACAGTAGTTTAGC+TGG + chr2_3:46961447-46961466 Msa0294810:intron 40.0%
TGAACAGTAGTTTAGCTGGT+TGG + chr2_3:46961451-46961470 Msa0294810:intron 40.0%
GAACAGTAGTTTAGCTGGTT+GGG + chr2_3:46961452-46961471 Msa0294810:intron 40.0%
GTTTAGCTGGTTGGGTTATT+TGG + chr2_3:46961460-46961479 Msa0294810:intron 40.0%
!!! GCTCTTGATTTGGTTTTTGC+AGG + chr2_3:46961487-46961506 Msa0294810:intron 40.0%
ATGAAGATGTAGTGCTCTAG+TGG - chr2_3:46961668-46961687 None:intergenic 40.0%
GATGCATACCACAATCAGAA+TGG + chr2_3:46962129-46962148 Msa0294810:CDS 40.0%
!! TCTCGACATTCTAAGGTGTT+CGG - chr2_3:46962169-46962188 None:intergenic 40.0%
!!! ATGAAGGCATTTTGTGAACG+GGG + chr2_3:46962326-46962345 Msa0294810:intron 40.0%
TACAGAAGACTCAGAAGTGA+AGG + chr2_3:46962376-46962395 Msa0294810:CDS 40.0%
ACAGAAGACTCAGAAGTGAA+GGG + chr2_3:46962377-46962396 Msa0294810:exon 40.0%
CTCGGAAAATTGGATGTTCC+GGG - chr2_3:46957360-46957379 None:intergenic 45.0%
GCTCGGAAAATTGGATGTTC+CGG - chr2_3:46957361-46957380 None:intergenic 45.0%
CTCCGCTCTCTTACAATTTC+CGG + chr2_3:46957383-46957402 Msa0294810:five_prime_UTR 45.0%
!! TGTTAGTGCCGATTCTGTTC+AGG + chr2_3:46957534-46957553 Msa0294810:five_prime_UTR 45.0%
!!! GCTTCCGTGGCTTTTTTTAC+AGG + chr2_3:46958060-46958079 Msa0294810:intron 45.0%
TGTTCCTTGCCATTGTGACT+TGG + chr2_3:46958200-46958219 Msa0294810:intron 45.0%
CAATCCAAGTCACAATGGCA+AGG - chr2_3:46958207-46958226 None:intergenic 45.0%
! CTCCATCGTTGGATTTTCAG+AGG + chr2_3:46958442-46958461 Msa0294810:intron 45.0%
!!! GGCAGTTTTTTGAGGATGCA+AGG + chr2_3:46958525-46958544 Msa0294810:five_prime_UTR 45.0%
! GTCGTGTTCCGATTGTTGTT+GGG + chr2_3:46958576-46958595 Msa0294810:five_prime_UTR 45.0%
! TCGTGTTCCGATTGTTGTTG+GGG + chr2_3:46958577-46958596 Msa0294810:five_prime_UTR 45.0%
GTTATCTCTGCAGAGGCTTT+AGG - chr2_3:46959226-46959245 None:intergenic 45.0%
!! GTACAGTTGGTGGTAAAAGC+AGG + chr2_3:46959304-46959323 Msa0294810:five_prime_UTR 45.0%
GGTAAAAGCAGGTGATCCAA+AGG + chr2_3:46959315-46959334 Msa0294810:five_prime_UTR 45.0%
TCTCTAGACTACGCCGTAAT+CGG - chr2_3:46959369-46959388 None:intergenic 45.0%
!! GATCACCTCCTTCTGCTTTT+CGG + chr2_3:46959776-46959795 Msa0294810:CDS 45.0%
TGGTTCTCTTTGATTGCAGG+AGG + chr2_3:46960158-46960177 Msa0294810:intron 45.0%
GGTTCTCTTTGATTGCAGGA+GGG + chr2_3:46960159-46960178 Msa0294810:intron 45.0%
GTTCTCTTTGATTGCAGGAG+GGG + chr2_3:46960160-46960179 Msa0294810:intron 45.0%
GATTCACCAATTTCAGGCCA+TGG + chr2_3:46960840-46960859 Msa0294810:intron 45.0%
ATAGGATGCAGAGAACAAGG+GGG + chr2_3:46960871-46960890 Msa0294810:CDS 45.0%
!! CATCTGTTGGGCAAGTTGAT+TGG + chr2_3:46961090-46961109 Msa0294810:intron 45.0%
TGCTTCACTATCTTGCCTGT+AGG + chr2_3:46961242-46961261 Msa0294810:intron 45.0%
CTATCTTGCCTGTAGGACAT+TGG + chr2_3:46961249-46961268 Msa0294810:intron 45.0%
CAACTAGACCAATGTCCTAC+AGG - chr2_3:46961260-46961279 None:intergenic 45.0%
! AGATGCTTCCCATGTTTTGC+TGG + chr2_3:46961425-46961444 Msa0294810:intron 45.0%
TCACGAAACGACAGTTGACT+TGG + chr2_3:46961514-46961533 Msa0294810:intron 45.0%
!! GTTTAGAAGCGTCAAGCCAA+TGG - chr2_3:46961619-46961638 None:intergenic 45.0%
CAACTGTCACACTTGCATTG+TGG + chr2_3:46961874-46961893 Msa0294810:intron 45.0%
TGAAGTTCAGAACGGTTTCC+TGG - chr2_3:46962104-46962123 None:intergenic 45.0%
!! CTCGACATTCTAAGGTGTTC+GGG - chr2_3:46962168-46962187 None:intergenic 45.0%
AAGACTCAGAAGTGAAGGGA+TGG + chr2_3:46962381-46962400 Msa0294810:exon 45.0%
! TTCCTCCTTTTACGCAAACC+AGG + chr2_3:46962620-46962639 Msa0294810:three_prime_UTR 45.0%
! ATCCTGGTTTGCGTAAAAGG+AGG - chr2_3:46962625-46962644 None:intergenic 45.0%
! AGGATCCTGGTTTGCGTAAA+AGG - chr2_3:46962628-46962647 None:intergenic 45.0%
AAATTGGATGTTCCGGGAGG+CGG - chr2_3:46957354-46957373 None:intergenic 50.0%
GGAAAATTGGATGTTCCGGG+AGG - chr2_3:46957357-46957376 None:intergenic 50.0%
AGCGGAGTTGCTCGGAAAAT+TGG - chr2_3:46957370-46957389 None:intergenic 50.0%
TGTAAGAGAGCGGAGTTGCT+CGG - chr2_3:46957378-46957397 None:intergenic 50.0%
CGCCGGAAATTGTAAGAGAG+CGG - chr2_3:46957388-46957407 None:intergenic 50.0%
TAGCGAGTTCCATTGCGAGA+CGG - chr2_3:46957495-46957514 None:intergenic 50.0%
GAACTCGCTAAACGCCTCAA+TGG + chr2_3:46957505-46957524 Msa0294810:five_prime_UTR 50.0%
!! TTAGGAAGTGCCGCATCATC+TGG + chr2_3:46958328-46958347 Msa0294810:intron 50.0%
! GGCCTCTGAAAATCCAACGA+TGG - chr2_3:46958447-46958466 None:intergenic 50.0%
GGTCGTGTTCCGATTGTTGT+TGG + chr2_3:46958575-46958594 Msa0294810:five_prime_UTR 50.0%
! CGTGTTCCGATTGTTGTTGG+GGG + chr2_3:46958578-46958597 Msa0294810:five_prime_UTR 50.0%
GGTATCCGAAAAGCAGAAGG+AGG - chr2_3:46959784-46959803 None:intergenic 50.0%
GGTCAAGTCTGTCGCTAGAA+AGG - chr2_3:46959939-46959958 None:intergenic 50.0%
TCTTTGATTGCAGGAGGGGA+TGG + chr2_3:46960164-46960183 Msa0294810:intron 50.0%
TCGCGAAACGACAGTTGACT+TGG + chr2_3:46961573-46961592 Msa0294810:CDS 50.0%
GCTTGACGCTTCTAAACCTG+TGG + chr2_3:46961622-46961641 Msa0294810:CDS 50.0%
AGGCTTACCGCACCAGAAAT+AGG + chr2_3:46962223-46962242 Msa0294810:CDS 50.0%
CAGTGACGAAAAAACGGCGC+CGG - chr2_3:46957405-46957424 None:intergenic 55.0%
!! ATTTCTGGACCCACCGGTTC+CGG + chr2_3:46957463-46957482 Msa0294810:five_prime_UTR 55.0%
CATTGCGAGACGGCTCTTAC+CGG - chr2_3:46957485-46957504 None:intergenic 55.0%
CCAGTGCCCCCAACAACAAT+CGG - chr2_3:46958587-46958606 None:intergenic 55.0%
!! GCAGAGGCTTTAGGCACATC+TGG - chr2_3:46959217-46959236 None:intergenic 55.0%
CTGGGAAGCTGCTGTACAGT+TGG + chr2_3:46959291-46959310 Msa0294810:five_prime_UTR 55.0%
GGAAGCTGCTGTACAGTTGG+TGG + chr2_3:46959294-46959313 Msa0294810:five_prime_UTR 55.0%
! GCCTTCTGTCTGAGGCTCAA+TGG + chr2_3:46960186-46960205 Msa0294810:CDS 55.0%
GCCATTGAGCCTCAGACAGA+AGG - chr2_3:46960190-46960209 None:intergenic 55.0%
GAGACGGCTCTTACCGGAAC+CGG - chr2_3:46957479-46957498 None:intergenic 60.0%
CGGTAAGAGCCGTCTCGCAA+TGG + chr2_3:46957483-46957502 Msa0294810:five_prime_UTR 60.0%
! CCGATTGTTGTTGGGGGCAC+TGG + chr2_3:46958584-46958603 Msa0294810:five_prime_UTR 60.0%
AGGGGATGGCCTTCTGTCTG+AGG + chr2_3:46960178-46960197 Msa0294810:CDS 60.0%
CAAGGGGGTCAGAGTTCAGC+TGG + chr2_3:46960886-46960905 Msa0294810:CDS 60.0%
TTGGATGTTCCGGGAGGCGG+AGG - chr2_3:46957351-46957370 None:intergenic 65.0%
CGGCTCTTACCGGAACCGGT+GGG - chr2_3:46957475-46957494 None:intergenic 65.0%
ACGGCTCTTACCGGAACCGG+TGG - chr2_3:46957476-46957495 None:intergenic 65.0%
!! CCGGGAGGCGGAGGCACGTG+CGG - chr2_3:46957342-46957361 None:intergenic 80.0%
! CCGCACGTGCCTCCGCCTCC+CGG + chr2_3:46957339-46957358 Msa0294810:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 46957264 46962657 46957264 ID=Msa0294810;Name=Msa0294810
chr2_3 mRNA 46957264 46962657 46957264 ID=Msa0294810-mRNA-1;Parent=Msa0294810;Name=Msa0294810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=949|1|1|1|1|0.9|10|262|273
chr2_3 exon 46957264 46957555 46957264 ID=Msa0294810-mRNA-1:exon:14616;Parent=Msa0294810-mRNA-1
chr2_3 exon 46958082 46958135 46958082 ID=Msa0294810-mRNA-1:exon:14617;Parent=Msa0294810-mRNA-1
chr2_3 exon 46958332 46958374 46958332 ID=Msa0294810-mRNA-1:exon:14618;Parent=Msa0294810-mRNA-1
chr2_3 exon 46958513 46958621 46958513 ID=Msa0294810-mRNA-1:exon:14619;Parent=Msa0294810-mRNA-1
chr2_3 exon 46959198 46960000 46959198 ID=Msa0294810-mRNA-1:exon:14620;Parent=Msa0294810-mRNA-1
chr2_3 exon 46960177 46960271 46960177 ID=Msa0294810-mRNA-1:exon:14621;Parent=Msa0294810-mRNA-1
chr2_3 exon 46960856 46960950 46960856 ID=Msa0294810-mRNA-1:exon:14622;Parent=Msa0294810-mRNA-1
chr2_3 exon 46961568 46961643 46961568 ID=Msa0294810-mRNA-1:exon:14623;Parent=Msa0294810-mRNA-1
chr2_3 exon 46962105 46962244 46962105 ID=Msa0294810-mRNA-1:exon:14624;Parent=Msa0294810-mRNA-1
chr2_3 exon 46962332 46962657 46962332 ID=Msa0294810-mRNA-1:exon:14625;Parent=Msa0294810-mRNA-1
chr2_3 five_prime_UTR 46957264 46957555 46957264 ID=Msa0294810-mRNA-1:five_prime_utr;Parent=Msa0294810-mRNA-1
chr2_3 five_prime_UTR 46958082 46958135 46958082 ID=Msa0294810-mRNA-1:five_prime_utr;Parent=Msa0294810-mRNA-1
chr2_3 five_prime_UTR 46958332 46958374 46958332 ID=Msa0294810-mRNA-1:five_prime_utr;Parent=Msa0294810-mRNA-1
chr2_3 five_prime_UTR 46958513 46958621 46958513 ID=Msa0294810-mRNA-1:five_prime_utr;Parent=Msa0294810-mRNA-1
chr2_3 five_prime_UTR 46959198 46959648 46959198 ID=Msa0294810-mRNA-1:five_prime_utr;Parent=Msa0294810-mRNA-1
chr2_3 CDS 46959649 46960000 46959649 ID=Msa0294810-mRNA-1:cds;Parent=Msa0294810-mRNA-1
chr2_3 CDS 46960177 46960271 46960177 ID=Msa0294810-mRNA-1:cds;Parent=Msa0294810-mRNA-1
chr2_3 CDS 46960856 46960950 46960856 ID=Msa0294810-mRNA-1:cds;Parent=Msa0294810-mRNA-1
chr2_3 CDS 46961568 46961643 46961568 ID=Msa0294810-mRNA-1:cds;Parent=Msa0294810-mRNA-1
chr2_3 CDS 46962105 46962244 46962105 ID=Msa0294810-mRNA-1:cds;Parent=Msa0294810-mRNA-1
chr2_3 CDS 46962332 46962395 46962332 ID=Msa0294810-mRNA-1:cds;Parent=Msa0294810-mRNA-1
chr2_3 three_prime_UTR 46962396 46962657 46962396 ID=Msa0294810-mRNA-1:three_prime_utr;Parent=Msa0294810-mRNA-1
Gene Sequence

>Msa0294810

ATGTGTTTATACCTGTATTTTTCTTTGTATGTATATGTGGAATGTATGGTTTCTTTGACCATTGAATTTTCTGAAATATATCATCAATTCACCATATATTTATATCTTTTGAAATGGCAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGATACCATATGATTCTTTCAGGGAACAGGGTGATTATAGAGTTGCTGATGGTTCTGATTCATCTGATATGAACACTAATTGTGATGCAATGAAAGAAACCGATTCAGCAAAGTTAGACTACGATTTTATGTGTTTTTTCCTTTCTAGCGACAGACTTGACCTCTACAAATCAATTGATTATCGGTGTGAAGATATGATATTAGGAGGGGATGGCCTTCTGTCTGAGGCTCAATGGCTTATTGATATCGGTCTTCAGCCAAACTCCAACTCTCCAACAAAAGCAATTGGTTACAGACAAGCCATGGATTACTTAATAGGATGCAGAGAACAAGGGGGTCAGAGTTCAGCTGGAGAATTTTACAGATTCTTGTCTGAATTTCAAAAAGCTTCAAGGAATTTCGCGAAACGACAGTTGACTTGGTTTCGTAATGAACATATTTACCATTGGCTTGACGCTTCTAAACCTGTGGAAACCGTTCTGAACTTCATTCATGATGCATACCACAATCAGAATGGAAATCTTTTTGTGCCCGAACACCTTAGAATGTCGAGAGATATTACTAATTCTCGAATAGCTGCTAAACTAAAGGCTTACCGCACCAGAAATAGGCATTTTGTGAACGGGGAAGATTGTTATCCTATTTTGGAATGGATACAGAAGACTCAGAAGTGA
Protein sequence

>Msa0294810

MCLYLYFSLYVYVECMVSLTIEFSEIYHQFTIYLYLLKWQSSGSPPSAFRIPYDSFREQGDYRVADGSDSSDMNTNCDAMKETDSAKLDYDFMCFFLSSDRLDLYKSIDYRCEDMILGGDGLLSEAQWLIDIGLQPNSNSPTKAIGYRQAMDYLIGCREQGGQSSAGEFYRFLSEFQKASRNFAKRQLTWFRNEHIYHWLDASKPVETVLNFIHDAYHNQNGNLFVPEHLRMSRDITNSRIAAKLKAYRTRNRHFVNGEDCYPILEWIQKTQK*