Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227620 | XP_024631459.1 | 96.581 | 234 | 8 | 0 | 40 | 273 | 115 | 348 | 6.21e-168 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227620 | sp|Q9C5J6|IPT9_ARATH | 56.957 | 230 | 97 | 1 | 40 | 269 | 220 | 447 | 1.54e-91 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227620 | A0A072V993 | 96.581 | 234 | 8 | 0 | 40 | 273 | 216 | 449 | 3.51e-168 | 482 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227550 | Msa0227620 | 0.918997 | 7.801278e-87 | -8.615850e-47 |
| Msa0227620 | Msa0294780 | 0.923701 | 1.876202e-89 | -8.615850e-47 |
| Msa0227620 | Msa0294810 | 0.902007 | 1.504955e-78 | -8.615850e-47 |
| Msa0227620 | Msa0333130 | 0.802707 | 4.938095e-49 | -8.615850e-47 |
| Msa0227620 | Msa0639370 | 0.804588 | 2.010342e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227620 | MtrunA17_Chr2g0316331 | 96.581 | 234 | 8 | 0 | 40 | 273 | 216 | 449 | 6.75e-172 | 482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227620 | AT5G20040.1 | 56.957 | 230 | 97 | 1 | 40 | 269 | 220 | 447 | 1.57e-92 | 281 |
| Msa0227620 | AT5G20040.3 | 55.508 | 236 | 97 | 2 | 40 | 269 | 220 | 453 | 7.11e-90 | 275 |
| Msa0227620 | AT5G20040.2 | 55.652 | 230 | 96 | 2 | 40 | 269 | 220 | 443 | 6.67e-88 | 269 |
Find 125 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGATTGTTATCCTATTT+TGG | 0.138618 | 2_1:-78868318 | Msa0227620:CDS |
| GCTTGAATTAGCTACATATT+TGG | 0.174201 | 2_1:-78868241 | Msa0227620:three_prime_UTR |
| GGATACCATATGATTCTTTC+AGG | 0.190617 | 2_1:-78870868 | Msa0227620:CDS |
| CAGGCCATGGATTACTTAAT+AGG | 0.213819 | 2_1:-78869811 | Msa0227620:CDS |
| AGGATCCTGGTTTGCGTAAA+AGG | 0.239175 | 2_1:+78868041 | None:intergenic |
| CTCCGCTCTCTTACAATTTC+CGG | 0.242499 | 2_1:-78873287 | Msa0227620:five_prime_UTR |
| AGGAGTATTGCAGGTTAAAT+AGG | 0.255838 | 2_1:-78868210 | Msa0227620:three_prime_UTR |
| GAGAAGGTGATAGTTATTTC+TGG | 0.257660 | 2_1:-78873222 | Msa0227620:five_prime_UTR |
| ATATTACTCTAGATAATAAT+TGG | 0.265851 | 2_1:+78873430 | None:intergenic |
| AGCGGAGTTGCTCGGAAAAT+TGG | 0.275218 | 2_1:+78873303 | None:intergenic |
| ACTCCGTTGTTCATCATCTT+TGG | 0.296832 | 2_1:+78873363 | None:intergenic |
| TAAAATACAAGGTTCATATA+TGG | 0.298492 | 2_1:-78871476 | Msa0227620:intron |
| CTACATATTTGGAATTATAA+AGG | 0.302459 | 2_1:-78868230 | Msa0227620:three_prime_UTR |
| AGGCTTACCGCACCAGAAAT+AGG | 0.314218 | 2_1:-78868442 | Msa0227620:intron |
| TTCTGTATCCATTCCAAAAT+AGG | 0.315245 | 2_1:+78868305 | None:intergenic |
| GTCGTGTTCCGATTGTTGTT+GGG | 0.316625 | 2_1:-78872087 | Msa0227620:five_prime_UTR |
| CGGTGTGAAGATATGATATT+AGG | 0.344759 | 2_1:-78870686 | Msa0227620:intron |
| TAATATCTCTCGACATTCTA+AGG | 0.349282 | 2_1:+78868492 | None:intergenic |
| ATATGATTCTTTCAGGGAAC+AGG | 0.349378 | 2_1:-78870861 | Msa0227620:CDS |
| ATTTCTGGACCCACCGGTTC+CGG | 0.350702 | 2_1:-78873207 | Msa0227620:five_prime_UTR |
| GCTCGGAAAATTGGATGTTC+CGG | 0.352035 | 2_1:+78873312 | None:intergenic |
| GGTCGTGTTCCGATTGTTGT+TGG | 0.354013 | 2_1:-78872088 | Msa0227620:five_prime_UTR |
| ACTGCTATATGTTGGACCTT+TGG | 0.358311 | 2_1:+78871332 | None:intergenic |
| TGTTAGTGCCGATTCTGTTC+AGG | 0.360188 | 2_1:-78873136 | Msa0227620:intron |
| GAATTATAAAGGAGTATTGC+AGG | 0.361214 | 2_1:-78868219 | Msa0227620:three_prime_UTR |
| TTTCAAAAGATATAAATATA+TGG | 0.365418 | 2_1:+78870925 | None:intergenic |
| GATAACATCTCAAGCTTGTA+TGG | 0.369477 | 2_1:-78871423 | Msa0227620:five_prime_UTR |
| CTCGGAAAATTGGATGTTCC+GGG | 0.370881 | 2_1:+78873313 | None:intergenic |
| TGAATGATTGGTACCGATTA+CGG | 0.374646 | 2_1:-78871310 | Msa0227620:five_prime_UTR |
| CTCGACATTCTAAGGTGTTC+GGG | 0.375668 | 2_1:+78868500 | None:intergenic |
| TCTAGATAATAATTGGATAA+AGG | 0.378778 | 2_1:+78873437 | None:intergenic |
| ACTAACCTTTACCAAAAGAT+TGG | 0.381185 | 2_1:-78871205 | Msa0227620:five_prime_UTR |
| TCTCTAGACTACGCCGTAAT+CGG | 0.385182 | 2_1:+78871297 | None:intergenic |
| TATTTATCAGATTATTCTGT+TGG | 0.385240 | 2_1:-78872160 | Msa0227620:intron |
| TTTGTTGGAGAGTTGGAGTT+TGG | 0.386503 | 2_1:+78870435 | None:intergenic |
| GTAGTCTAACTTTGCTGAAT+CGG | 0.387153 | 2_1:+78870769 | None:intergenic |
| TTTCGTCACTGCATCATTAA+CGG | 0.390206 | 2_1:-78873256 | Msa0227620:five_prime_UTR |
| GCAGAGGCTTTAGGCACATC+TGG | 0.392567 | 2_1:+78871449 | None:intergenic |
| TCTACAAATCAATTGATTAT+CGG | 0.397595 | 2_1:-78870706 | Msa0227620:CDS |
| GTTATCTCTGCAGAGGCTTT+AGG | 0.398015 | 2_1:+78871440 | None:intergenic |
| TCTCGACATTCTAAGGTGTT+CGG | 0.404470 | 2_1:+78868499 | None:intergenic |
| CCGCACGTGCCTCCGCCTCC+CGG | 0.415823 | 2_1:-78873331 | Msa0227620:five_prime_UTR |
| AACATATAGCAGTGAATGAT+TGG | 0.419947 | 2_1:-78871322 | Msa0227620:five_prime_UTR |
| GCCTTCTGTCTGAGGCTCAA+TGG | 0.420564 | 2_1:-78870479 | Msa0227620:CDS |
| GCGTAGTCTAGAGATTATTA+AGG | 0.424856 | 2_1:-78871288 | Msa0227620:five_prime_UTR |
| AACTCTCCAACAAAAGCAAT+TGG | 0.427647 | 2_1:-78870426 | Msa0227620:CDS |
| TTAGGAAGTGCCGCATCATC+TGG | 0.429156 | 2_1:-78872335 | Msa0227620:intron |
| TCTTTGATTGCAGGAGGGGA+TGG | 0.439720 | 2_1:-78870501 | Msa0227620:intron |
| GTATGTATATGTGGAATGTA+TGG | 0.442418 | 2_1:-78870990 | Msa0227620:CDS |
| GCTCAATGGCTTATTGATAT+CGG | 0.444199 | 2_1:-78870465 | Msa0227620:CDS |
| CATTGCGAGACGGCTCTTAC+CGG | 0.451232 | 2_1:+78873188 | None:intergenic |
| ATGAGAAAGACAGGCAAGAA+TGG | 0.457909 | 2_1:+78871152 | None:intergenic |
| ACCTTTCTATCATTTAATGA+AGG | 0.458751 | 2_1:+78872548 | None:intergenic |
| GAACTCGCTAAACGCCTCAA+TGG | 0.461709 | 2_1:-78873165 | Msa0227620:five_prime_UTR |
| AAAGATTTCCATTCTGATTG+TGG | 0.464882 | 2_1:+78868528 | None:intergenic |
| GATACCATATGATTCTTTCA+GGG | 0.466118 | 2_1:-78870867 | Msa0227620:CDS |
| TCGCGAAACGACAGTTGACT+TGG | 0.470955 | 2_1:-78869090 | Msa0227620:CDS |
| AAATTGGATGTTCCGGGAGG+CGG | 0.480885 | 2_1:+78873319 | None:intergenic |
| AATACCTCTAAGTTCTTGAC+TGG | 0.482470 | 2_1:-78871230 | Msa0227620:five_prime_UTR |
| TCGTGTTCCGATTGTTGTTG+GGG | 0.487543 | 2_1:-78872086 | Msa0227620:five_prime_UTR |
| GGTCAAGTCTGTCGCTAGAA+AGG | 0.487687 | 2_1:+78870729 | None:intergenic |
| TTGGATGTTCCGGGAGGCGG+AGG | 0.491724 | 2_1:+78873322 | None:intergenic |
| GTATCCAGTCAAGAACTTAG+AGG | 0.492473 | 2_1:+78871226 | None:intergenic |
| CACTAACAATTTCGCCATTG+AGG | 0.492621 | 2_1:+78873151 | None:intergenic |
| TCTACATAAAAGTCAACAAA+AGG | 0.498727 | 2_1:+78868155 | None:intergenic |
| AATTCATACCTGAACAGAAT+CGG | 0.498815 | 2_1:+78873128 | None:intergenic |
| AGGGGATGGCCTTCTGTCTG+AGG | 0.502583 | 2_1:-78870487 | Msa0227620:CDS |
| ATTTATCAGATTATTCTGTT+GGG | 0.508010 | 2_1:-78872159 | Msa0227620:intron |
| ATAATGAAAATGAGAAAGAC+AGG | 0.512030 | 2_1:+78871143 | None:intergenic |
| TATGATGACATCAAGGATCC+TGG | 0.512314 | 2_1:+78868028 | None:intergenic |
| TCGAATAGCTGCTAAACTAA+AGG | 0.513714 | 2_1:-78868462 | Msa0227620:CDS |
| GCCTTCATTAAATGATAGAA+AGG | 0.513937 | 2_1:-78872549 | Msa0227620:intron |
| ATATATTTCAGAAAATTCAA+TGG | 0.514366 | 2_1:+78870958 | None:intergenic |
| GTAATGAACATATTTACCAT+TGG | 0.516604 | 2_1:-78869063 | Msa0227620:CDS |
| ACGGCTCTTACCGGAACCGG+TGG | 0.523860 | 2_1:+78873197 | None:intergenic |
| TGTTCCCTGAAAGAATCATA+TGG | 0.526900 | 2_1:+78870863 | None:intergenic |
| TACAGAAGACTCAGAAGTGA+AGG | 0.532598 | 2_1:-78868289 | Msa0227620:exon |
| AATCATTCACTGCTATATGT+TGG | 0.534947 | 2_1:+78871324 | None:intergenic |
| AAGACTCAGAAGTGAAGGGA+TGG | 0.547384 | 2_1:-78868284 | Msa0227620:exon |
| GATGCATACCACAATCAGAA+TGG | 0.547399 | 2_1:-78868536 | Msa0227620:CDS |
| GAGACGGCTCTTACCGGAAC+CGG | 0.549004 | 2_1:+78873194 | None:intergenic |
| TGTAAGAGAGCGGAGTTGCT+CGG | 0.549418 | 2_1:+78873295 | None:intergenic |
| TTAATAGGATGCAGAGAACA+AGG | 0.553374 | 2_1:-78869796 | Msa0227620:CDS |
| AATTACAGAGAAATGACGAC+TGG | 0.556833 | 2_1:-78871391 | Msa0227620:five_prime_UTR |
| CAAAAGGATGTTAACAAGCA+AGG | 0.558369 | 2_1:+78868171 | None:intergenic |
| GTGTATAAGGGTCTTGATGT+TGG | 0.558699 | 2_1:-78872581 | Msa0227620:five_prime_UTR |
| GCCATTGAGCCTCAGACAGA+AGG | 0.563993 | 2_1:+78870478 | None:intergenic |
| CGGTAAGAGCCGTCTCGCAA+TGG | 0.565346 | 2_1:-78873187 | Msa0227620:five_prime_UTR |
| GACATACTTCATCCATCTGA+AGG | 0.571668 | 2_1:-78872310 | Msa0227620:intron |
| TGAACATTATGATGACATCA+AGG | 0.571904 | 2_1:+78868021 | None:intergenic |
| GCATCCTATTAAGTAATCCA+TGG | 0.573382 | 2_1:+78869807 | None:intergenic |
| ATAGTTATTTCTGGACCCAC+CGG | 0.573440 | 2_1:-78873213 | Msa0227620:five_prime_UTR |
| GATAATCAATTGATTTGTAG+AGG | 0.576340 | 2_1:+78870708 | None:intergenic |
| CCGGGAGGCGGAGGCACGTG+CGG | 0.577791 | 2_1:+78873331 | None:intergenic |
| GTTTAGAAGCGTCAAGCCAA+TGG | 0.583750 | 2_1:+78869047 | None:intergenic |
| GCACTGGACTGTATTTAAGA+TGG | 0.588035 | 2_1:-78872063 | Msa0227620:intron |
| CTGGGAAGCTGCTGTACAGT+TGG | 0.592385 | 2_1:-78871372 | Msa0227620:five_prime_UTR |
| CCACATTGAAAATAAATGCA+TGG | 0.595571 | 2_1:+78871098 | None:intergenic |
| GGAAGCTGCTGTACAGTTGG+TGG | 0.596218 | 2_1:-78871369 | Msa0227620:five_prime_UTR |
| AAAGAAAACAGACCTTCAGA+TGG | 0.597193 | 2_1:+78872298 | None:intergenic |
| CAAAATACCTATTTCTGGTG+CGG | 0.602995 | 2_1:+78868435 | None:intergenic |
| TATGGTATCCGAAAAGCAGA+AGG | 0.603536 | 2_1:+78870881 | None:intergenic |
| AATAGGATGCAGAGAACAAG+GGG | 0.606555 | 2_1:-78869794 | Msa0227620:CDS |
| TAGCGAGTTCCATTGCGAGA+CGG | 0.606605 | 2_1:+78873178 | None:intergenic |
| TTGAGATGTTATCTCTGCAG+AGG | 0.613063 | 2_1:+78871433 | None:intergenic |
| TAATAGGATGCAGAGAACAA+GGG | 0.615293 | 2_1:-78869795 | Msa0227620:CDS |
| GGTGATTATAGAGTTGCTGA+TGG | 0.618618 | 2_1:-78870839 | Msa0227620:CDS |
| AACGGAGAAGAAGAAAGAGA+AGG | 0.621988 | 2_1:-78873238 | Msa0227620:five_prime_UTR |
| GCTTGACGCTTCTAAACCTG+TGG | 0.623923 | 2_1:-78869041 | Msa0227620:intron |
| TATGATTCTTTCAGGGAACA+GGG | 0.627524 | 2_1:-78870860 | Msa0227620:CDS |
| GTACAGTTGGTGGTAAAAGC+AGG | 0.629027 | 2_1:-78871359 | Msa0227620:five_prime_UTR |
| GGTAAAAGCAGGTGATCCAA+AGG | 0.631846 | 2_1:-78871348 | Msa0227620:five_prime_UTR |
| CGTGTTCCGATTGTTGTTGG+GGG | 0.635484 | 2_1:-78872085 | Msa0227620:five_prime_UTR |
| ATCCTGGTTTGCGTAAAAGG+AGG | 0.645026 | 2_1:+78868044 | None:intergenic |
| ACAGAAGACTCAGAAGTGAA+GGG | 0.645454 | 2_1:-78868288 | Msa0227620:exon |
| CGCCGGAAATTGTAAGAGAG+CGG | 0.646103 | 2_1:+78873285 | None:intergenic |
| ATCATGAATGAAGTTCAGAA+CGG | 0.659921 | 2_1:+78868556 | None:intergenic |
| ATTACAGAGAAATGACGACT+GGG | 0.664187 | 2_1:-78871390 | Msa0227620:five_prime_UTR |
| CGGCTCTTACCGGAACCGGT+GGG | 0.678594 | 2_1:+78873198 | None:intergenic |
| GGTATCCGAAAAGCAGAAGG+AGG | 0.686824 | 2_1:+78870884 | None:intergenic |
| AGTATGTCAACCAGATGATG+CGG | 0.688771 | 2_1:+78872325 | None:intergenic |
| GGAAAATTGGATGTTCCGGG+AGG | 0.707103 | 2_1:+78873316 | None:intergenic |
| AGTCCAAAGATGATGAACAA+CGG | 0.709326 | 2_1:-78873366 | Msa0227620:five_prime_UTR |
| ACAAGATCTATTCTTGACAA+CGG | 0.716891 | 2_1:-78872109 | Msa0227620:five_prime_UTR |
| ATAGGATGCAGAGAACAAGG+GGG | 0.808450 | 2_1:-78869793 | Msa0227620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAAGTGATAAAT+CGG | - | chr2_1:78868689-78868708 | Msa0227620:intron | 10.0% |
| !! | TTTCAAAAGATATAAATATA+TGG | + | chr2_1:78870553-78870572 | None:intergenic | 10.0% |
| !!! | TATATTTATATCTTTTGAAA+TGG | - | chr2_1:78870553-78870572 | Msa0227620:intron | 10.0% |
| !! | AAAATTCTTATAAGTAAAAA+AGG | + | chr2_1:78872640-78872659 | None:intergenic | 10.0% |
| !! | ATATTACTCTAGATAATAAT+TGG | + | chr2_1:78868048-78868067 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGTTTTGTTTTT+TGG | - | chr2_1:78869117-78869136 | Msa0227620:intron | 15.0% |
| !!! | AATTAGTTTCAAATTACAAT+TGG | + | chr2_1:78869293-78869312 | None:intergenic | 15.0% |
| !! | TTATACAATAATATAGTATC+AGG | - | chr2_1:78869650-78869669 | Msa0227620:intron | 15.0% |
| !! | TATACAATAATATAGTATCA+GGG | - | chr2_1:78869651-78869670 | Msa0227620:intron | 15.0% |
| !! | ATATATTTCAGAAAATTCAA+TGG | + | chr2_1:78870520-78870539 | None:intergenic | 15.0% |
| !! | ATTTAATAAATTCCACTAAA+TGG | + | chr2_1:78871347-78871366 | None:intergenic | 15.0% |
| !! | TTCATGTATACTTTAAATTA+TGG | - | chr2_1:78871496-78871515 | Msa0227620:intron | 15.0% |
| !!! | TTTTGTTTTACATAAGATAA+TGG | - | chr2_1:78871770-78871789 | Msa0227620:intron | 15.0% |
| !!! | TAACTATTACTTCTAAAATT+GGG | + | chr2_1:78872573-78872592 | None:intergenic | 15.0% |
| !!! | TTAACTATTACTTCTAAAAT+TGG | + | chr2_1:78872574-78872593 | None:intergenic | 15.0% |
| !!! | TTTTAGAAGTAATAGTTAAA+TGG | - | chr2_1:78872575-78872594 | Msa0227620:five_prime_UTR | 15.0% |
| !!! | AGAATTTTTAGAACTTTTAA+TGG | - | chr2_1:78872652-78872671 | Msa0227620:intron | 15.0% |
| !!! | TAATAATTGTTTCTATATGA+AGG | - | chr2_1:78873120-78873139 | Msa0227620:intron | 15.0% |
| !! | TCTAGATAATAATTGGATAA+AGG | + | chr2_1:78868041-78868060 | None:intergenic | 20.0% |
| !!! | TCTGCTCTTTTTTTTTTTTT+GGG | + | chr2_1:78868442-78868461 | None:intergenic | 20.0% |
| !!! | TTCTGCTCTTTTTTTTTTTT+TGG | + | chr2_1:78868443-78868462 | None:intergenic | 20.0% |
| !!! | AACGTATAACTCTTTTTTTT+TGG | + | chr2_1:78868813-78868832 | None:intergenic | 20.0% |
| !!! | GATGTTTTCTTTATTCAATA+CGG | - | chr2_1:78868850-78868869 | Msa0227620:intron | 20.0% |
| !!! | TTTTGTTTTGTTTTTTGGTT+AGG | - | chr2_1:78869122-78869141 | Msa0227620:intron | 20.0% |
| !! | TATTTATCAGATTATTCTGT+TGG | - | chr2_1:78869315-78869334 | Msa0227620:intron | 20.0% |
| !! | ATTTATCAGATTATTCTGTT+GGG | - | chr2_1:78869316-78869335 | Msa0227620:intron | 20.0% |
| !!! | TCTTTGATGTTTAAAATACA+AGG | - | chr2_1:78869988-78870007 | Msa0227620:intron | 20.0% |
| !! | TAAAATACAAGGTTCATATA+TGG | - | chr2_1:78869999-78870018 | Msa0227620:intron | 20.0% |
| !! | ATACATACAAAGAAAAATAC+AGG | + | chr2_1:78870473-78870492 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTGTATGTATATG+TGG | - | chr2_1:78870476-78870495 | Msa0227620:CDS | 20.0% |
| !! | TCTACAAATCAATTGATTAT+CGG | - | chr2_1:78870769-78870788 | Msa0227620:CDS | 20.0% |
| !! | TATGATATTAGGTAATTAAC+TGG | - | chr2_1:78870800-78870819 | Msa0227620:CDS | 20.0% |
| !! | CTCAAATAAAGAAATAGATT+TGG | - | chr2_1:78871141-78871160 | Msa0227620:five_prime_UTR | 20.0% |
| !! | CATGCTTTAATAAATATCAT+TGG | - | chr2_1:78871192-78871211 | Msa0227620:five_prime_UTR | 20.0% |
| !! | TATTTATTCTTTCCATTTAG+TGG | - | chr2_1:78871332-78871351 | Msa0227620:five_prime_UTR | 20.0% |
| !!! | TTTAAAGTATACATGAACAT+GGG | + | chr2_1:78871493-78871512 | None:intergenic | 20.0% |
| !!! | ATTTAAAGTATACATGAACA+TGG | + | chr2_1:78871494-78871513 | None:intergenic | 20.0% |
| !! | TTTAAATTATGGTTGCAATT+CGG | - | chr2_1:78871507-78871526 | Msa0227620:intron | 20.0% |
| !! | CAAAAATGCAAATATCATAT+AGG | + | chr2_1:78871591-78871610 | None:intergenic | 20.0% |
| !! | TTTGATATAAATAGTGAGAA+TGG | - | chr2_1:78871607-78871626 | Msa0227620:intron | 20.0% |
| !!! | GTGTTTTTTTTTTATGTTCA+TGG | + | chr2_1:78871862-78871881 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTAAAGAAAAAGC+TGG | - | chr2_1:78872175-78872194 | Msa0227620:intron | 20.0% |
| !! | TATACATAAGAAATTAGATG+AGG | + | chr2_1:78872509-78872528 | None:intergenic | 20.0% |
| !! | ATCTAATTTCTTATGTATAC+TGG | - | chr2_1:78872510-78872529 | Msa0227620:intron | 20.0% |
| !! | GCATAAGCTTAAAAAAATTA+CGG | + | chr2_1:78872869-78872888 | None:intergenic | 20.0% |
| !! | AAAAACAAAATACCTATTTC+TGG | + | chr2_1:78873048-78873067 | None:intergenic | 20.0% |
| !!! | CTACATATTTGGAATTATAA+AGG | - | chr2_1:78873245-78873264 | Msa0227620:five_prime_UTR | 20.0% |
| !! | CAAGTATTTCAAGTGATTTA+AGG | - | chr2_1:78868533-78868552 | Msa0227620:CDS | 25.0% |
| !! | TGTGAATTTTGTATAATCGT+AGG | - | chr2_1:78868602-78868621 | Msa0227620:intron | 25.0% |
| ! | GCAATTAATTACTATGTGTA+TGG | - | chr2_1:78868749-78868768 | Msa0227620:intron | 25.0% |
| ! | AAAAGAGTTATACGTTACAA+TGG | - | chr2_1:78868817-78868836 | Msa0227620:intron | 25.0% |
| !!! | CTTTTTTTACAGGTGTATAA+GGG | - | chr2_1:78868882-78868901 | Msa0227620:intron | 25.0% |
| ! | ACCTTTCTATCATTTAATGA+AGG | + | chr2_1:78868930-78868949 | None:intergenic | 25.0% |
| ! | ATTTAGTTGCAACATAGAAA+TGG | - | chr2_1:78869064-78869083 | Msa0227620:CDS | 25.0% |
| ! | TTTAGTTGCAACATAGAAAT+GGG | - | chr2_1:78869065-78869084 | Msa0227620:CDS | 25.0% |
| ! | TTACAATTGGCCAAAATAAA+AGG | + | chr2_1:78869280-78869299 | None:intergenic | 25.0% |
| ! | ACAAAGTAGGTAATTGAAAA+AGG | + | chr2_1:78869442-78869461 | None:intergenic | 25.0% |
| ! | GAATATGTAGTTAACAAAGT+AGG | + | chr2_1:78869455-78869474 | None:intergenic | 25.0% |
| ! | ATTTCCTTATTGTGAAATAG+TGG | - | chr2_1:78869485-78869504 | Msa0227620:intron | 25.0% |
| !! | AAGAGAGCATAAATAGTAAA+TGG | - | chr2_1:78869536-78869555 | Msa0227620:intron | 25.0% |
| ! | TATACTTTGTAGGTATACTA+TGG | - | chr2_1:78869741-78869760 | Msa0227620:CDS | 25.0% |
| !! | TTTATCCAATCTTTTGGTAA+AGG | + | chr2_1:78870278-78870297 | None:intergenic | 25.0% |
| ! | ATAATGAAAATGAGAAAGAC+AGG | + | chr2_1:78870335-78870354 | None:intergenic | 25.0% |
| !!! | GATAATCAATTGATTTGTAG+AGG | + | chr2_1:78870770-78870789 | None:intergenic | 25.0% |
| ! | TCTAATAGCAATAAATCTCT+TGG | - | chr2_1:78870948-78870967 | Msa0227620:CDS | 25.0% |
| ! | GATATTTATTAAAGCATGTC+TGG | + | chr2_1:78871190-78871209 | None:intergenic | 25.0% |
| !! | TTAACATTCTCCCAATTTTT+AGG | - | chr2_1:78871216-78871235 | Msa0227620:five_prime_UTR | 25.0% |
| ! | TCCAAAAGCTTAAATAAACA+GGG | + | chr2_1:78871242-78871261 | None:intergenic | 25.0% |
| ! | TTCCAAAAGCTTAAATAAAC+AGG | + | chr2_1:78871243-78871262 | None:intergenic | 25.0% |
| ! | TATGTAAAAATACAGCATGT+AGG | + | chr2_1:78871566-78871585 | None:intergenic | 25.0% |
| !! | GCATTTTCTAATTACAACAA+TGG | + | chr2_1:78872132-78872151 | None:intergenic | 25.0% |
| ! | GTAATGAACATATTTACCAT+TGG | - | chr2_1:78872412-78872431 | Msa0227620:intron | 25.0% |
| ! | TTCTTATAAGTAAAAAAGGC+AGG | + | chr2_1:78872636-78872655 | None:intergenic | 25.0% |
| !!! | GGTATTTTGTTTTTAGTATC+TGG | - | chr2_1:78873054-78873073 | Msa0227620:intron | 25.0% |
| !!! | ATTGTTATCCTATTTTGGAA+TGG | - | chr2_1:78873162-78873181 | Msa0227620:five_prime_UTR | 25.0% |
| ! | TCTACATAAAAGTCAACAAA+AGG | + | chr2_1:78873323-78873342 | None:intergenic | 25.0% |
| AATTCATACCTGAACAGAAT+CGG | + | chr2_1:78868350-78868369 | None:intergenic | 30.0% | |
| TAATCAAGGTAGCTAAAATC+AGG | + | chr2_1:78868650-78868669 | None:intergenic | 30.0% | |
| !!! | TGATTTTAGCTACCTTGATT+AGG | - | chr2_1:78868649-78868668 | Msa0227620:intron | 30.0% |
| AAAAACAAACCTCCTAATCA+AGG | + | chr2_1:78868664-78868683 | None:intergenic | 30.0% | |
| AATCGGTTAAGAATGATATG+TGG | - | chr2_1:78868706-78868725 | Msa0227620:intron | 30.0% | |
| !!! | GCTTTTTTTACAGGTGTATA+AGG | - | chr2_1:78868881-78868900 | Msa0227620:intron | 30.0% |
| GCCTTCATTAAATGATAGAA+AGG | - | chr2_1:78868926-78868945 | Msa0227620:intron | 30.0% | |
| !! | TTTTCAGAGGCCTTTTATTT+TGG | - | chr2_1:78869267-78869286 | Msa0227620:intron | 30.0% |
| ACAAGATCTATTCTTGACAA+CGG | - | chr2_1:78869366-78869385 | Msa0227620:intron | 30.0% | |
| TGTACAGAAGACAAATCAAT+TGG | + | chr2_1:78869821-78869840 | None:intergenic | 30.0% | |
| GTGATAATTCACTAAAACAG+TGG | + | chr2_1:78869883-78869902 | None:intergenic | 30.0% | |
| TACTTATAGACCAGTTTATG+TGG | - | chr2_1:78869943-78869962 | Msa0227620:intron | 30.0% | |
| AATCATTCACTGCTATATGT+TGG | + | chr2_1:78870154-78870173 | None:intergenic | 30.0% | |
| AACATATAGCAGTGAATGAT+TGG | - | chr2_1:78870153-78870172 | Msa0227620:intron | 30.0% | |
| ACTAACCTTTACCAAAAGAT+TGG | - | chr2_1:78870270-78870289 | Msa0227620:intron | 30.0% | |
| !! | GAGAGTTTTATCCAATCTTT+TGG | + | chr2_1:78870284-78870303 | None:intergenic | 30.0% |
| CCACATTGAAAATAAATGCA+TGG | + | chr2_1:78870380-78870399 | None:intergenic | 30.0% | |
| !! | CCATGCATTTATTTTCAATG+TGG | - | chr2_1:78870377-78870396 | Msa0227620:intron | 30.0% |
| GTATGTATATGTGGAATGTA+TGG | - | chr2_1:78870485-78870504 | Msa0227620:CDS | 30.0% | |
| GATACCATATGATTCTTTCA+GGG | - | chr2_1:78870608-78870627 | Msa0227620:intron | 30.0% | |
| ATAAACAGGGCCTAAAAATT+GGG | + | chr2_1:78871229-78871248 | None:intergenic | 30.0% | |
| AATAAACAGGGCCTAAAAAT+TGG | + | chr2_1:78871230-78871249 | None:intergenic | 30.0% | |
| ! | AGAGTAGCTTCTGAAAATAA+CGG | + | chr2_1:78871400-78871419 | None:intergenic | 30.0% |
| CTGAATTTCAAAAAGCTTCA+AGG | - | chr2_1:78871740-78871759 | Msa0227620:intron | 30.0% | |
| CATAATTTAGCCAATGTCAA+GGG | + | chr2_1:78871798-78871817 | None:intergenic | 30.0% | |
| ACATAATTTAGCCAATGTCA+AGG | + | chr2_1:78871799-78871818 | None:intergenic | 30.0% | |
| ACAACTTAAAGTATGCTATG+TGG | - | chr2_1:78871819-78871838 | Msa0227620:intron | 30.0% | |
| CAACTTAAAGTATGCTATGT+GGG | - | chr2_1:78871820-78871839 | Msa0227620:intron | 30.0% | |
| TGTAATTAGAAAATGCATGC+TGG | - | chr2_1:78872136-78872155 | Msa0227620:five_prime_UTR | 30.0% | |
| GTAATTAGAAAATGCATGCT+GGG | - | chr2_1:78872137-78872156 | Msa0227620:five_prime_UTR | 30.0% | |
| !!! | TTACTTGATTTGGTTTTTGC+AGG | - | chr2_1:78872358-78872377 | Msa0227620:intron | 30.0% |
| AGATTCAATCATTATACCAC+AGG | + | chr2_1:78872453-78872472 | None:intergenic | 30.0% | |
| GGTATAGTTGTTAGTATCTA+GGG | + | chr2_1:78872615-78872634 | None:intergenic | 30.0% | |
| AGGTATAGTTGTTAGTATCT+AGG | + | chr2_1:78872616-78872635 | None:intergenic | 30.0% | |
| ACGTGCTTTAACATACTTTA+TGG | - | chr2_1:78872730-78872749 | Msa0227620:intron | 30.0% | |
| ! | ACTTTATGGAAGTCCTTTTA+TGG | - | chr2_1:78872744-78872763 | Msa0227620:intron | 30.0% |
| TGCATGTTGTTGTATGTAAT+TGG | - | chr2_1:78872813-78872832 | Msa0227620:intron | 30.0% | |
| ATGTTGTTGTATGTAATTGG+AGG | - | chr2_1:78872816-78872835 | Msa0227620:intron | 30.0% | |
| TATGATGAACAACTTATTCC+AGG | - | chr2_1:78872893-78872912 | Msa0227620:intron | 30.0% | |
| ATCATGAATGAAGTTCAGAA+CGG | + | chr2_1:78872922-78872941 | None:intergenic | 30.0% | |
| AAAGATTTCCATTCTGATTG+TGG | + | chr2_1:78872950-78872969 | None:intergenic | 30.0% | |
| TAATATCTCTCGACATTCTA+AGG | + | chr2_1:78872986-78873005 | None:intergenic | 30.0% | |
| !!! | ATATGAAGGCATTTTGTGAA+CGG | - | chr2_1:78873134-78873153 | Msa0227620:intron | 30.0% |
| ! | GGAAGATTGTTATCCTATTT+TGG | - | chr2_1:78873157-78873176 | Msa0227620:five_prime_UTR | 30.0% |
| TTCTGTATCCATTCCAAAAT+AGG | + | chr2_1:78873173-78873192 | None:intergenic | 30.0% | |
| GCTTGAATTAGCTACATATT+TGG | - | chr2_1:78873234-78873253 | Msa0227620:five_prime_UTR | 30.0% | |
| !! | GAATTATAAAGGAGTATTGC+AGG | - | chr2_1:78873256-78873275 | Msa0227620:five_prime_UTR | 30.0% |
| AGTCCAAAGATGATGAACAA+CGG | - | chr2_1:78868109-78868128 | Msa0227620:three_prime_UTR | 35.0% | |
| ATGATGCAGTGACGAAAAAA+CGG | + | chr2_1:78868216-78868235 | None:intergenic | 35.0% | |
| TTTCGTCACTGCATCATTAA+CGG | - | chr2_1:78868219-78868238 | Msa0227620:three_prime_UTR | 35.0% | |
| ! | GAGAAGGTGATAGTTATTTC+TGG | - | chr2_1:78868253-78868272 | Msa0227620:three_prime_UTR | 35.0% |
| GAGCAGAATTTGAACTAACA+AGG | - | chr2_1:78868455-78868474 | Msa0227620:CDS | 35.0% | |
| AAGGTAGCTAAAATCAGGAA+GGG | + | chr2_1:78868645-78868664 | None:intergenic | 35.0% | |
| !! | TTTTAGCTACCTTGATTAGG+AGG | - | chr2_1:78868652-78868671 | Msa0227620:intron | 35.0% |
| TACACCTGTAAAAAAAGCCA+CGG | + | chr2_1:78868879-78868898 | None:intergenic | 35.0% | |
| AAAGAAAACAGACCTTCAGA+TGG | + | chr2_1:78869180-78869199 | None:intergenic | 35.0% | |
| GTGTATGAGGATATGTGTAT+AGG | + | chr2_1:78869230-78869249 | None:intergenic | 35.0% | |
| ACAGCCACTATTTCACAATA+AGG | + | chr2_1:78869492-78869511 | None:intergenic | 35.0% | |
| ACTTGCGGAAATAAGAAAAG+TGG | + | chr2_1:78869565-78869584 | None:intergenic | 35.0% | |
| ATGACTTCATCAGTAACTTG+CGG | + | chr2_1:78869580-78869599 | None:intergenic | 35.0% | |
| GGGAAAAAGTAATGCAGAAT+TGG | - | chr2_1:78869671-78869690 | Msa0227620:intron | 35.0% | |
| ! | AAGTAATGCAGAATTGGTTC+TGG | - | chr2_1:78869677-78869696 | Msa0227620:intron | 35.0% |
| AGGATGTGCATATACTTTGT+AGG | - | chr2_1:78869731-78869750 | Msa0227620:intron | 35.0% | |
| ! | CTATGGTGATTTACTAGTCT+TGG | - | chr2_1:78869758-78869777 | Msa0227620:CDS | 35.0% |
| GGTATATACTCCACATAAAC+TGG | + | chr2_1:78869956-78869975 | None:intergenic | 35.0% | |
| GATAACATCTCAAGCTTGTA+TGG | - | chr2_1:78870052-78870071 | Msa0227620:intron | 35.0% | |
| AATTACAGAGAAATGACGAC+TGG | - | chr2_1:78870084-78870103 | Msa0227620:intron | 35.0% | |
| ATTACAGAGAAATGACGACT+GGG | - | chr2_1:78870085-78870104 | Msa0227620:intron | 35.0% | |
| !! | TGAATGATTGGTACCGATTA+CGG | - | chr2_1:78870165-78870184 | Msa0227620:intron | 35.0% |
| GCGTAGTCTAGAGATTATTA+AGG | - | chr2_1:78870187-78870206 | Msa0227620:intron | 35.0% | |
| AATACCTCTAAGTTCTTGAC+TGG | - | chr2_1:78870245-78870264 | Msa0227620:intron | 35.0% | |
| GGATACCATATGATTCTTTC+AGG | - | chr2_1:78870607-78870626 | Msa0227620:intron | 35.0% | |
| TGTTCCCTGAAAGAATCATA+TGG | + | chr2_1:78870615-78870634 | None:intergenic | 35.0% | |
| ATATGATTCTTTCAGGGAAC+AGG | - | chr2_1:78870614-78870633 | Msa0227620:intron | 35.0% | |
| TATGATTCTTTCAGGGAACA+GGG | - | chr2_1:78870615-78870634 | Msa0227620:intron | 35.0% | |
| GTAGTCTAACTTTGCTGAAT+CGG | + | chr2_1:78870709-78870728 | None:intergenic | 35.0% | |
| CGGTGTGAAGATATGATATT+AGG | - | chr2_1:78870789-78870808 | Msa0227620:CDS | 35.0% | |
| GCTCAATGGCTTATTGATAT+CGG | - | chr2_1:78871010-78871029 | Msa0227620:CDS | 35.0% | |
| !! | AATTGCTTTTGTTGGAGAGT+TGG | + | chr2_1:78871050-78871069 | None:intergenic | 35.0% |
| AACTCTCCAACAAAAGCAAT+TGG | - | chr2_1:78871049-78871068 | Msa0227620:five_prime_UTR | 35.0% | |
| !! | CTGTAACCAATTGCTTTTGT+TGG | + | chr2_1:78871058-78871077 | None:intergenic | 35.0% |
| ! | GCCCTGTTTATTTAAGCTTT+TGG | - | chr2_1:78871238-78871257 | Msa0227620:five_prime_UTR | 35.0% |
| GCATCCTATTAAGTAATCCA+TGG | + | chr2_1:78871671-78871690 | None:intergenic | 35.0% | |
| TTAATAGGATGCAGAGAACA+AGG | - | chr2_1:78871679-78871698 | Msa0227620:intron | 35.0% | |
| TAATAGGATGCAGAGAACAA+GGG | - | chr2_1:78871680-78871699 | Msa0227620:intron | 35.0% | |
| ACAGATGTTGTCAGAATACT+AGG | + | chr2_1:78871888-78871907 | None:intergenic | 35.0% | |
| AGTATTCTGACAACATCTGT+TGG | - | chr2_1:78871888-78871907 | Msa0227620:intron | 35.0% | |
| GTATTCTGACAACATCTGTT+GGG | - | chr2_1:78871889-78871908 | Msa0227620:intron | 35.0% | |
| CCTTGACTTAATACATACCA+AGG | + | chr2_1:78872022-78872041 | None:intergenic | 35.0% | |
| CCTTGGTATGTATTAAGTCA+AGG | - | chr2_1:78872019-78872038 | Msa0227620:intron | 35.0% | |
| GGTATGTATTAAGTCAAGGA+TGG | - | chr2_1:78872023-78872042 | Msa0227620:intron | 35.0% | |
| CTTTCTCAACTCAGTTAAGT+TGG | - | chr2_1:78872099-78872118 | Msa0227620:five_prime_UTR | 35.0% | |
| TAACGTCATGATGCATAGTT+GGG | + | chr2_1:78872218-78872237 | None:intergenic | 35.0% | |
| ATTTGGCAATGCTCTTGATT+TGG | - | chr2_1:78872289-78872308 | Msa0227620:intron | 35.0% | |
| GTTTCGTCTCTTACTTGATT+TGG | - | chr2_1:78872348-78872367 | Msa0227620:intron | 35.0% | |
| CACTACTTAGGTTCCATAAA+AGG | + | chr2_1:78872760-78872779 | None:intergenic | 35.0% | |
| ! | CTTTTATGGAACCTAAGTAG+TGG | - | chr2_1:78872758-78872777 | Msa0227620:intron | 35.0% |
| GCATAAGATAACCACTACTT+AGG | + | chr2_1:78872772-78872791 | None:intergenic | 35.0% | |
| TCGAATAGCTGCTAAACTAA+AGG | - | chr2_1:78873013-78873032 | Msa0227620:intron | 35.0% | |
| !! | CAAAATACCTATTTCTGGTG+CGG | + | chr2_1:78873043-78873062 | None:intergenic | 35.0% |
| !!! | TATGAAGGCATTTTGTGAAC+GGG | - | chr2_1:78873135-78873154 | Msa0227620:intron | 35.0% |
| !! | AGGAGTATTGCAGGTTAAAT+AGG | - | chr2_1:78873265-78873284 | Msa0227620:five_prime_UTR | 35.0% |
| CAAAAGGATGTTAACAAGCA+AGG | + | chr2_1:78873307-78873326 | None:intergenic | 35.0% | |
| ACTCCGTTGTTCATCATCTT+TGG | + | chr2_1:78868115-78868134 | None:intergenic | 40.0% | |
| AACGGAGAAGAAGAAAGAGA+AGG | - | chr2_1:78868237-78868256 | Msa0227620:three_prime_UTR | 40.0% | |
| !! | ATAGTTATTTCTGGACCCAC+CGG | - | chr2_1:78868262-78868281 | Msa0227620:three_prime_UTR | 40.0% |
| CACTAACAATTTCGCCATTG+AGG | + | chr2_1:78868327-78868346 | None:intergenic | 40.0% | |
| AGGTAGCTAAAATCAGGAAG+GGG | + | chr2_1:78868644-78868663 | None:intergenic | 40.0% | |
| CAAGGTAGCTAAAATCAGGA+AGG | + | chr2_1:78868646-78868665 | None:intergenic | 40.0% | |
| TTTATTCAATACGGCTTCCG+TGG | - | chr2_1:78868859-78868878 | Msa0227620:intron | 40.0% | |
| GTGTATAAGGGTCTTGATGT+TGG | - | chr2_1:78868894-78868913 | Msa0227620:intron | 40.0% | |
| ACAGACAATCCAAGTCACAA+TGG | + | chr2_1:78869024-78869043 | None:intergenic | 40.0% | |
| AGTATGTCAACCAGATGATG+CGG | + | chr2_1:78869153-78869172 | None:intergenic | 40.0% | |
| GACATACTTCATCCATCTGA+AGG | - | chr2_1:78869165-78869184 | Msa0227620:intron | 40.0% | |
| ACGATGGAGAAATGTGTATG+AGG | + | chr2_1:78869243-78869262 | None:intergenic | 40.0% | |
| CATACACATTTCTCCATCGT+TGG | - | chr2_1:78869243-78869262 | Msa0227620:intron | 40.0% | |
| !!! | TTCTGTTGGGCAGTTTTTTG+AGG | - | chr2_1:78869329-78869348 | Msa0227620:intron | 40.0% |
| GCACTGGACTGTATTTAAGA+TGG | - | chr2_1:78869412-78869431 | Msa0227620:intron | 40.0% | |
| ! | TGCATGACTTGCGTAATTGA+AGG | - | chr2_1:78869711-78869730 | Msa0227620:intron | 40.0% |
| ! | AATACACGATCTGAAGCTAG+AGG | - | chr2_1:78869794-78869813 | Msa0227620:CDS | 40.0% |
| CATCAAAGAACAGAGCTCAT+AGG | + | chr2_1:78869977-78869996 | None:intergenic | 40.0% | |
| TTGAGATGTTATCTCTGCAG+AGG | + | chr2_1:78870045-78870064 | None:intergenic | 40.0% | |
| ACTGCTATATGTTGGACCTT+TGG | + | chr2_1:78870146-78870165 | None:intergenic | 40.0% | |
| GTATCCAGTCAAGAACTTAG+AGG | + | chr2_1:78870252-78870271 | None:intergenic | 40.0% | |
| ATGAGAAAGACAGGCAAGAA+TGG | + | chr2_1:78870326-78870345 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAATGGCAGTCTAG+TGG | - | chr2_1:78870564-78870583 | Msa0227620:intron | 40.0% |
| TATGGTATCCGAAAAGCAGA+AGG | + | chr2_1:78870597-78870616 | None:intergenic | 40.0% | |
| GGTGATTATAGAGTTGCTGA+TGG | - | chr2_1:78870636-78870655 | Msa0227620:intron | 40.0% | |
| ! | TCTTGGTTCTCTTTGATTGC+AGG | - | chr2_1:78870965-78870984 | Msa0227620:CDS | 40.0% |
| TTTGTTGGAGAGTTGGAGTT+TGG | + | chr2_1:78871043-78871062 | None:intergenic | 40.0% | |
| GCTTGTGATTCACCAATTTC+AGG | - | chr2_1:78871645-78871664 | Msa0227620:intron | 40.0% | |
| AGTAATCCATGGCCTGAAAT+TGG | + | chr2_1:78871660-78871679 | None:intergenic | 40.0% | |
| ! | CAGGCCATGGATTACTTAAT+AGG | - | chr2_1:78871664-78871683 | Msa0227620:intron | 40.0% |
| AATAGGATGCAGAGAACAAG+GGG | - | chr2_1:78871681-78871700 | Msa0227620:intron | 40.0% | |
| ! | GATAATGGTACCCTTGACAT+TGG | - | chr2_1:78871785-78871804 | Msa0227620:intron | 40.0% |
| !! | TTGGGCAAGTTGATTGGTTA+TGG | - | chr2_1:78871907-78871926 | Msa0227620:intron | 40.0% |
| ! | AAGCTTTTCATGCTCAACCT+TGG | - | chr2_1:78872002-78872021 | Msa0227620:intron | 40.0% |
| TTAGAAAATGCATGCTGGGA+TGG | - | chr2_1:78872141-78872160 | Msa0227620:five_prime_UTR | 40.0% | |
| TAGAAAATGCATGCTGGGAT+GGG | - | chr2_1:78872142-78872161 | Msa0227620:five_prime_UTR | 40.0% | |
| CTAACGTCATGATGCATAGT+TGG | + | chr2_1:78872219-78872238 | None:intergenic | 40.0% | |
| GTTCACAACCAGCAAAACAT+GGG | + | chr2_1:78872248-78872267 | None:intergenic | 40.0% | |
| TGTTCACAACCAGCAAAACA+TGG | + | chr2_1:78872249-78872268 | None:intergenic | 40.0% | |
| GTTGTGAACAGTAGTTTAGC+TGG | - | chr2_1:78872259-78872278 | Msa0227620:intron | 40.0% | |
| TGAACAGTAGTTTAGCTGGT+TGG | - | chr2_1:78872263-78872282 | Msa0227620:intron | 40.0% | |
| GAACAGTAGTTTAGCTGGTT+GGG | - | chr2_1:78872264-78872283 | Msa0227620:intron | 40.0% | |
| GTTTAGCTGGTTGGGTTATT+TGG | - | chr2_1:78872272-78872291 | Msa0227620:intron | 40.0% | |
| !!! | GCTCTTGATTTGGTTTTTGC+AGG | - | chr2_1:78872299-78872318 | Msa0227620:intron | 40.0% |
| ATGAAGATGTAGTGCTCTAG+TGG | + | chr2_1:78872480-78872499 | None:intergenic | 40.0% | |
| GATGCATACCACAATCAGAA+TGG | - | chr2_1:78872939-78872958 | Msa0227620:intron | 40.0% | |
| !! | TCTCGACATTCTAAGGTGTT+CGG | + | chr2_1:78872979-78872998 | None:intergenic | 40.0% |
| !!! | ATGAAGGCATTTTGTGAACG+GGG | - | chr2_1:78873136-78873155 | Msa0227620:intron | 40.0% |
| TACAGAAGACTCAGAAGTGA+AGG | - | chr2_1:78873186-78873205 | Msa0227620:five_prime_UTR | 40.0% | |
| ACAGAAGACTCAGAAGTGAA+GGG | - | chr2_1:78873187-78873206 | Msa0227620:five_prime_UTR | 40.0% | |
| CTCGGAAAATTGGATGTTCC+GGG | + | chr2_1:78868165-78868184 | None:intergenic | 45.0% | |
| GCTCGGAAAATTGGATGTTC+CGG | + | chr2_1:78868166-78868185 | None:intergenic | 45.0% | |
| CTCCGCTCTCTTACAATTTC+CGG | - | chr2_1:78868188-78868207 | Msa0227620:three_prime_UTR | 45.0% | |
| !! | TGTTAGTGCCGATTCTGTTC+AGG | - | chr2_1:78868339-78868358 | Msa0227620:intron | 45.0% |
| !!! | GCTTCCGTGGCTTTTTTTAC+AGG | - | chr2_1:78868872-78868891 | Msa0227620:intron | 45.0% |
| TGTTCCTTGCCATTGTGACT+TGG | - | chr2_1:78869012-78869031 | Msa0227620:intron | 45.0% | |
| CAATCCAAGTCACAATGGCA+AGG | + | chr2_1:78869019-78869038 | None:intergenic | 45.0% | |
| ! | CTCCATCGTTGGATTTTCAG+AGG | - | chr2_1:78869254-78869273 | Msa0227620:intron | 45.0% |
| !!! | GGCAGTTTTTTGAGGATGCA+AGG | - | chr2_1:78869337-78869356 | Msa0227620:intron | 45.0% |
| ! | GTCGTGTTCCGATTGTTGTT+GGG | - | chr2_1:78869388-78869407 | Msa0227620:intron | 45.0% |
| ! | TCGTGTTCCGATTGTTGTTG+GGG | - | chr2_1:78869389-78869408 | Msa0227620:intron | 45.0% |
| GTTATCTCTGCAGAGGCTTT+AGG | + | chr2_1:78870038-78870057 | None:intergenic | 45.0% | |
| !! | GTACAGTTGGTGGTAAAAGC+AGG | - | chr2_1:78870116-78870135 | Msa0227620:intron | 45.0% |
| GGTAAAAGCAGGTGATCCAA+AGG | - | chr2_1:78870127-78870146 | Msa0227620:intron | 45.0% | |
| TCTCTAGACTACGCCGTAAT+CGG | + | chr2_1:78870181-78870200 | None:intergenic | 45.0% | |
| !! | GATCACCTCCTTCTGCTTTT+CGG | - | chr2_1:78870586-78870605 | Msa0227620:intron | 45.0% |
| TGGTTCTCTTTGATTGCAGG+AGG | - | chr2_1:78870968-78870987 | Msa0227620:CDS | 45.0% | |
| GGTTCTCTTTGATTGCAGGA+GGG | - | chr2_1:78870969-78870988 | Msa0227620:CDS | 45.0% | |
| GTTCTCTTTGATTGCAGGAG+GGG | - | chr2_1:78870970-78870989 | Msa0227620:CDS | 45.0% | |
| GATTCACCAATTTCAGGCCA+TGG | - | chr2_1:78871651-78871670 | Msa0227620:intron | 45.0% | |
| ATAGGATGCAGAGAACAAGG+GGG | - | chr2_1:78871682-78871701 | Msa0227620:intron | 45.0% | |
| !! | CATCTGTTGGGCAAGTTGAT+TGG | - | chr2_1:78871901-78871920 | Msa0227620:intron | 45.0% |
| TGCTTCACTATCTTGCCTGT+AGG | - | chr2_1:78872053-78872072 | Msa0227620:intron | 45.0% | |
| CTATCTTGCCTGTAGGACAT+TGG | - | chr2_1:78872060-78872079 | Msa0227620:intron | 45.0% | |
| CAACTAGACCAATGTCCTAC+AGG | + | chr2_1:78872071-78872090 | None:intergenic | 45.0% | |
| ! | AGATGCTTCCCATGTTTTGC+TGG | - | chr2_1:78872237-78872256 | Msa0227620:intron | 45.0% |
| TCACGAAACGACAGTTGACT+TGG | - | chr2_1:78872326-78872345 | Msa0227620:five_prime_UTR | 45.0% | |
| !! | GTTTAGAAGCGTCAAGCCAA+TGG | + | chr2_1:78872431-78872450 | None:intergenic | 45.0% |
| CAACTGTCACACTTGCATTG+TGG | - | chr2_1:78872684-78872703 | Msa0227620:intron | 45.0% | |
| TGAAGTTCAGAACGGTTTCC+TGG | + | chr2_1:78872914-78872933 | None:intergenic | 45.0% | |
| !! | CTCGACATTCTAAGGTGTTC+GGG | + | chr2_1:78872978-78872997 | None:intergenic | 45.0% |
| AAGACTCAGAAGTGAAGGGA+TGG | - | chr2_1:78873191-78873210 | Msa0227620:five_prime_UTR | 45.0% | |
| ! | TTCCTCCTTTTACGCAAACC+AGG | - | chr2_1:78873429-78873448 | Msa0227620:five_prime_UTR | 45.0% |
| ! | ATCCTGGTTTGCGTAAAAGG+AGG | + | chr2_1:78873434-78873453 | None:intergenic | 45.0% |
| ! | AGGATCCTGGTTTGCGTAAA+AGG | + | chr2_1:78873437-78873456 | None:intergenic | 45.0% |
| AAATTGGATGTTCCGGGAGG+CGG | + | chr2_1:78868159-78868178 | None:intergenic | 50.0% | |
| GGAAAATTGGATGTTCCGGG+AGG | + | chr2_1:78868162-78868181 | None:intergenic | 50.0% | |
| AGCGGAGTTGCTCGGAAAAT+TGG | + | chr2_1:78868175-78868194 | None:intergenic | 50.0% | |
| TGTAAGAGAGCGGAGTTGCT+CGG | + | chr2_1:78868183-78868202 | None:intergenic | 50.0% | |
| CGCCGGAAATTGTAAGAGAG+CGG | + | chr2_1:78868193-78868212 | None:intergenic | 50.0% | |
| TAGCGAGTTCCATTGCGAGA+CGG | + | chr2_1:78868300-78868319 | None:intergenic | 50.0% | |
| GAACTCGCTAAACGCCTCAA+TGG | - | chr2_1:78868310-78868329 | Msa0227620:CDS | 50.0% | |
| !! | TTAGGAAGTGCCGCATCATC+TGG | - | chr2_1:78869140-78869159 | Msa0227620:intron | 50.0% |
| ! | GGCCTCTGAAAATCCAACGA+TGG | + | chr2_1:78869259-78869278 | None:intergenic | 50.0% |
| GGTCGTGTTCCGATTGTTGT+TGG | - | chr2_1:78869387-78869406 | Msa0227620:intron | 50.0% | |
| ! | CGTGTTCCGATTGTTGTTGG+GGG | - | chr2_1:78869390-78869409 | Msa0227620:intron | 50.0% |
| GGTATCCGAAAAGCAGAAGG+AGG | + | chr2_1:78870594-78870613 | None:intergenic | 50.0% | |
| GGTCAAGTCTGTCGCTAGAA+AGG | + | chr2_1:78870749-78870768 | None:intergenic | 50.0% | |
| TCTTTGATTGCAGGAGGGGA+TGG | - | chr2_1:78870974-78870993 | Msa0227620:CDS | 50.0% | |
| TCGCGAAACGACAGTTGACT+TGG | - | chr2_1:78872385-78872404 | Msa0227620:intron | 50.0% | |
| GCTTGACGCTTCTAAACCTG+TGG | - | chr2_1:78872434-78872453 | Msa0227620:intron | 50.0% | |
| AGGCTTACCGCACCAGAAAT+AGG | - | chr2_1:78873033-78873052 | Msa0227620:intron | 50.0% | |
| CAGTGACGAAAAAACGGCGC+CGG | + | chr2_1:78868210-78868229 | None:intergenic | 55.0% | |
| !! | ATTTCTGGACCCACCGGTTC+CGG | - | chr2_1:78868268-78868287 | Msa0227620:three_prime_UTR | 55.0% |
| CATTGCGAGACGGCTCTTAC+CGG | + | chr2_1:78868290-78868309 | None:intergenic | 55.0% | |
| CCAGTGCCCCCAACAACAAT+CGG | + | chr2_1:78869399-78869418 | None:intergenic | 55.0% | |
| !! | GCAGAGGCTTTAGGCACATC+TGG | + | chr2_1:78870029-78870048 | None:intergenic | 55.0% |
| CTGGGAAGCTGCTGTACAGT+TGG | - | chr2_1:78870103-78870122 | Msa0227620:intron | 55.0% | |
| GGAAGCTGCTGTACAGTTGG+TGG | - | chr2_1:78870106-78870125 | Msa0227620:intron | 55.0% | |
| ! | GCCTTCTGTCTGAGGCTCAA+TGG | - | chr2_1:78870996-78871015 | Msa0227620:CDS | 55.0% |
| GCCATTGAGCCTCAGACAGA+AGG | + | chr2_1:78871000-78871019 | None:intergenic | 55.0% | |
| GAGACGGCTCTTACCGGAAC+CGG | + | chr2_1:78868284-78868303 | None:intergenic | 60.0% | |
| CGGTAAGAGCCGTCTCGCAA+TGG | - | chr2_1:78868288-78868307 | Msa0227620:exon | 60.0% | |
| ! | CCGATTGTTGTTGGGGGCAC+TGG | - | chr2_1:78869396-78869415 | Msa0227620:intron | 60.0% |
| AGGGGATGGCCTTCTGTCTG+AGG | - | chr2_1:78870988-78871007 | Msa0227620:CDS | 60.0% | |
| CAAGGGGGTCAGAGTTCAGC+TGG | - | chr2_1:78871697-78871716 | Msa0227620:intron | 60.0% | |
| TTGGATGTTCCGGGAGGCGG+AGG | + | chr2_1:78868156-78868175 | None:intergenic | 65.0% | |
| CGGCTCTTACCGGAACCGGT+GGG | + | chr2_1:78868280-78868299 | None:intergenic | 65.0% | |
| ACGGCTCTTACCGGAACCGG+TGG | + | chr2_1:78868281-78868300 | None:intergenic | 65.0% | |
| !! | CCGGGAGGCGGAGGCACGTG+CGG | + | chr2_1:78868147-78868166 | None:intergenic | 80.0% |
| ! | CCGCACGTGCCTCCGCCTCC+CGG | - | chr2_1:78868144-78868163 | Msa0227620:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78868031 | 78873466 | 78868031 | ID=Msa0227620;Name=Msa0227620 |
| chr2_1 | mRNA | 78868031 | 78873466 | 78868031 | ID=Msa0227620-mRNA-1;Parent=Msa0227620;Name=Msa0227620-mRNA-1;_AED=0.15;_eAED=0.15;_QI=985|1|1|1|1|0.9|10|261|273 |
| chr2_1 | exon | 78868031 | 78868355 | 78868031 | ID=Msa0227620-mRNA-1:exon:23991;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78868443 | 78868582 | 78868443 | ID=Msa0227620-mRNA-1:exon:23990;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78869042 | 78869117 | 78869042 | ID=Msa0227620-mRNA-1:exon:23989;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78869736 | 78869830 | 78869736 | ID=Msa0227620-mRNA-1:exon:23988;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78870416 | 78870510 | 78870416 | ID=Msa0227620-mRNA-1:exon:23987;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78870687 | 78871487 | 78870687 | ID=Msa0227620-mRNA-1:exon:23986;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78872064 | 78872172 | 78872064 | ID=Msa0227620-mRNA-1:exon:23985;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78872311 | 78872353 | 78872311 | ID=Msa0227620-mRNA-1:exon:23984;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78872550 | 78872603 | 78872550 | ID=Msa0227620-mRNA-1:exon:23983;Parent=Msa0227620-mRNA-1 |
| chr2_1 | exon | 78873137 | 78873466 | 78873137 | ID=Msa0227620-mRNA-1:exon:23982;Parent=Msa0227620-mRNA-1 |
| chr2_1 | five_prime_UTR | 78873137 | 78873466 | 78873137 | ID=Msa0227620-mRNA-1:five_prime_utr;Parent=Msa0227620-mRNA-1 |
| chr2_1 | five_prime_UTR | 78872550 | 78872603 | 78872550 | ID=Msa0227620-mRNA-1:five_prime_utr;Parent=Msa0227620-mRNA-1 |
| chr2_1 | five_prime_UTR | 78872311 | 78872353 | 78872311 | ID=Msa0227620-mRNA-1:five_prime_utr;Parent=Msa0227620-mRNA-1 |
| chr2_1 | five_prime_UTR | 78872064 | 78872172 | 78872064 | ID=Msa0227620-mRNA-1:five_prime_utr;Parent=Msa0227620-mRNA-1 |
| chr2_1 | five_prime_UTR | 78871039 | 78871487 | 78871039 | ID=Msa0227620-mRNA-1:five_prime_utr;Parent=Msa0227620-mRNA-1 |
| chr2_1 | CDS | 78870687 | 78871038 | 78870687 | ID=Msa0227620-mRNA-1:cds;Parent=Msa0227620-mRNA-1 |
| chr2_1 | CDS | 78870416 | 78870510 | 78870416 | ID=Msa0227620-mRNA-1:cds;Parent=Msa0227620-mRNA-1 |
| chr2_1 | CDS | 78869736 | 78869830 | 78869736 | ID=Msa0227620-mRNA-1:cds;Parent=Msa0227620-mRNA-1 |
| chr2_1 | CDS | 78869042 | 78869117 | 78869042 | ID=Msa0227620-mRNA-1:cds;Parent=Msa0227620-mRNA-1 |
| chr2_1 | CDS | 78868443 | 78868582 | 78868443 | ID=Msa0227620-mRNA-1:cds;Parent=Msa0227620-mRNA-1 |
| chr2_1 | CDS | 78868292 | 78868355 | 78868292 | ID=Msa0227620-mRNA-1:cds;Parent=Msa0227620-mRNA-1 |
| chr2_1 | three_prime_UTR | 78868031 | 78868291 | 78868031 | ID=Msa0227620-mRNA-1:three_prime_utr;Parent=Msa0227620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
