Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227830 | XP_013465025.1 | 99.631 | 271 | 1 | 0 | 1 | 271 | 1 | 271 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227830 | sp|Q8VYN2|VAP42_ARATH | 64.310 | 297 | 78 | 4 | 1 | 271 | 1 | 295 | 3.97e-127 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227830 | B7FKV5 | 99.631 | 271 | 1 | 0 | 1 | 271 | 1 | 271 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227830 | Msa0261530 | 0.967850 | 7.546552e-128 | -8.615850e-47 |
| Msa0227830 | Msa0305060 | 0.929911 | 3.516121e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227830 | MtrunA17_Chr2g0323731 | 99.631 | 271 | 1 | 0 | 1 | 271 | 1 | 271 | 0.0 | 559 |
| Msa0227830 | MtrunA17_Chr4g0048491 | 67.897 | 271 | 82 | 3 | 1 | 271 | 1 | 266 | 4.92e-123 | 351 |
| Msa0227830 | MtrunA17_Chr2g0318581 | 64.504 | 262 | 63 | 4 | 6 | 266 | 8 | 240 | 2.38e-108 | 313 |
| Msa0227830 | MtrunA17_Chr7g0230901 | 31.148 | 122 | 77 | 2 | 87 | 205 | 11 | 128 | 4.14e-11 | 61.6 |
| Msa0227830 | MtrunA17_Chr5g0399141 | 31.967 | 122 | 76 | 2 | 87 | 205 | 13 | 130 | 6.04e-11 | 61.2 |
| Msa0227830 | MtrunA17_Chr4g0056231 | 32.773 | 119 | 73 | 2 | 87 | 202 | 12 | 126 | 6.40e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227830 | AT4G21450.1 | 64.310 | 297 | 78 | 4 | 1 | 271 | 1 | 295 | 4.04e-128 | 365 |
| Msa0227830 | AT4G21450.3 | 60.127 | 316 | 79 | 5 | 1 | 271 | 1 | 314 | 3.26e-122 | 351 |
| Msa0227830 | AT5G54110.1 | 69.565 | 253 | 69 | 3 | 16 | 266 | 16 | 262 | 7.49e-107 | 310 |
| Msa0227830 | AT4G05060.1 | 58.719 | 281 | 97 | 4 | 1 | 262 | 1 | 281 | 8.33e-100 | 293 |
| Msa0227830 | AT4G21450.2 | 59.048 | 210 | 60 | 3 | 1 | 184 | 1 | 210 | 2.24e-74 | 226 |
| Msa0227830 | AT5G54110.2 | 59.890 | 182 | 66 | 3 | 4 | 184 | 5 | 180 | 2.43e-53 | 172 |
Find 73 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTTCCGGTGAGATTC+CGG | 0.211669 | 2_1:+79109714 | Msa0227830:five_prime_UTR |
| TTGCCGGAAACTTCAATTTC+CGG | 0.244323 | 2_1:+79109703 | Msa0227830:five_prime_UTR |
| CGGCAAATGGGTCGTTGAAT+TGG | 0.258021 | 2_1:-79109686 | None:intergenic |
| TTGTGACTTGTTTGCCAAAA+TGG | 0.267547 | 2_1:-79109804 | None:intergenic |
| TCACCGGAAATTGAAGTTTC+CGG | 0.278752 | 2_1:-79109706 | None:intergenic |
| AGGCACTAATCTGTCAATTA+TGG | 0.308763 | 2_1:+79113534 | Msa0227830:three_prime_UTR |
| CAAGGAAAGTAGAGCTTGTT+AGG | 0.313060 | 2_1:-79110002 | None:intergenic |
| CAAGTCTCATGTAGCTTTCA+AGG | 0.338891 | 2_1:+79110740 | Msa0227830:CDS |
| TGTTCTTAAATTTAATTCCT+TGG | 0.346163 | 2_1:+79113511 | Msa0227830:three_prime_UTR |
| ATGAACCTGGTAAGCAAGTT+AGG | 0.348697 | 2_1:+79110691 | Msa0227830:CDS |
| TTGTGGAAGATGGATTTATT+TGG | 0.357321 | 2_1:-79109620 | None:intergenic |
| AAATTGAAGTTTCCGGCAAA+TGG | 0.358528 | 2_1:-79109699 | None:intergenic |
| CAATTCAACGACCCATTTGC+CGG | 0.374352 | 2_1:+79109687 | Msa0227830:five_prime_UTR |
| CTCATTTCTAATAATATTTG+TGG | 0.376855 | 2_1:+79113615 | Msa0227830:three_prime_UTR |
| AAATGGCACATTACCAGTTC+TGG | 0.385154 | 2_1:-79112184 | None:intergenic |
| CTTACAGGGCTGTTTCGGTC+AGG | 0.389728 | 2_1:-79112536 | None:intergenic |
| GGCAAATGGGTCGTTGAATT+GGG | 0.392317 | 2_1:-79109685 | None:intergenic |
| CATAGCTATCTACAAGTTGT+AGG | 0.392403 | 2_1:-79113705 | None:intergenic |
| ATAATCTTACAGGGCTGTTT+CGG | 0.396911 | 2_1:-79112541 | None:intergenic |
| AGCTGTAGAGCAAATTCTTC+GGG | 0.398279 | 2_1:+79112499 | Msa0227830:CDS |
| AAGGACTTGTTATAGATGAA+TGG | 0.401395 | 2_1:+79112735 | Msa0227830:CDS |
| GAGACAGGGCCACGAGTAGC+TGG | 0.404871 | 2_1:+79112710 | Msa0227830:CDS |
| CCTAAAAGTGCAAGGTGAAA+TGG | 0.412866 | 2_1:+79112153 | Msa0227830:CDS |
| GCACTCCTAACTTGCTTACC+AGG | 0.419468 | 2_1:-79110696 | None:intergenic |
| AAGAAACCACCGGAGGAGAC+AGG | 0.419468 | 2_1:+79112695 | Msa0227830:CDS |
| CTAAATCTTTGCTTCCTACT+AGG | 0.428995 | 2_1:+79109958 | Msa0227830:CDS |
| CAGGATCTGATGGAAAAGTT+TGG | 0.433561 | 2_1:+79109766 | Msa0227830:CDS |
| AGGACTTGTTATAGATGAAT+GGG | 0.451585 | 2_1:+79112736 | Msa0227830:CDS |
| TCCTTGTGTAGAAGGAAAGA+AGG | 0.456645 | 2_1:+79113379 | Msa0227830:intron |
| AGCTGAGGCCGAGGCTGCAT+TGG | 0.458362 | 2_1:+79112664 | Msa0227830:CDS |
| AATTGAAGTTTCCGGCAAAT+GGG | 0.458853 | 2_1:-79109698 | None:intergenic |
| TAGCTGTAGAGCAAATTCTT+CGG | 0.461589 | 2_1:+79112498 | Msa0227830:CDS |
| TACAAAAGATCTTTGACATA+AGG | 0.467380 | 2_1:-79113488 | None:intergenic |
| AATGGACTATGTACCAGAAC+TGG | 0.479335 | 2_1:+79112171 | Msa0227830:CDS |
| AGACGAAGTCTTCTCCTAGT+AGG | 0.481638 | 2_1:-79109972 | None:intergenic |
| TCGTGCTTCCAATGCAGCCT+CGG | 0.488925 | 2_1:-79112672 | None:intergenic |
| TTGGCCAAGCAGCAGGTTGA+AGG | 0.492022 | 2_1:+79113411 | Msa0227830:CDS |
| AGTTGTTACATGCGCCCTCC+TGG | 0.495213 | 2_1:+79111923 | Msa0227830:CDS |
| AAGATACTTGGCCAAGCAGC+AGG | 0.498578 | 2_1:+79113404 | Msa0227830:CDS |
| TCTTAAATTTAATTCCTTGG+AGG | 0.499056 | 2_1:+79113514 | Msa0227830:three_prime_UTR |
| AACACCTTCAACCTGCTGCT+TGG | 0.501873 | 2_1:-79113415 | None:intergenic |
| ACTCGTGGCCCTGTCTCCTC+CGG | 0.502107 | 2_1:-79112704 | None:intergenic |
| AGTGAAAAGCCAGGATCTGA+TGG | 0.504454 | 2_1:+79109756 | Msa0227830:CDS |
| TTACAGGGCTGTTTCGGTCA+GGG | 0.507614 | 2_1:-79112535 | None:intergenic |
| GTAGTAGTTGAAGATGATGA+AGG | 0.508383 | 2_1:-79109828 | None:intergenic |
| TGTGAATCAAACAACGTTGG+TGG | 0.511296 | 2_1:+79109545 | Msa0227830:five_prime_UTR |
| CCTGGTGGTATTCTTGCACC+TGG | 0.512639 | 2_1:+79111941 | Msa0227830:CDS |
| TTGACGTTTAAGTTTATCCA+TGG | 0.512677 | 2_1:-79112639 | None:intergenic |
| GGAAAGAAGGGAAAGATACT+TGG | 0.513511 | 2_1:+79113392 | Msa0227830:CDS |
| GAAACTGTAGCTGAAGATTG+AGG | 0.525099 | 2_1:-79109927 | None:intergenic |
| AGAAACCACCGGAGGAGACA+GGG | 0.555174 | 2_1:+79112696 | Msa0227830:CDS |
| ATTTCTAATAATATTTGTGG+TGG | 0.561543 | 2_1:+79113618 | Msa0227830:three_prime_UTR |
| ACGTCAATTAGCTGAGGCCG+AGG | 0.571515 | 2_1:+79112655 | Msa0227830:CDS |
| CGTGGCCCTGTCTCCTCCGG+TGG | 0.574776 | 2_1:-79112701 | None:intergenic |
| TTGACAGATTAGTGCCTCCA+AGG | 0.574920 | 2_1:-79113528 | None:intergenic |
| CCTTGTGTAGAAGGAAAGAA+GGG | 0.576270 | 2_1:+79113380 | Msa0227830:intron |
| AACATTGTGCATGTAAGAAG+TGG | 0.578766 | 2_1:-79109862 | None:intergenic |
| GGTGAAAGTATAATTGCCAC+TGG | 0.584183 | 2_1:+79111962 | Msa0227830:CDS |
| ATCATGAGCCTAAAAGTGCA+AGG | 0.613890 | 2_1:+79112145 | Msa0227830:CDS |
| GGTTGAGTGACCTATAAAAG+TGG | 0.613901 | 2_1:+79113555 | Msa0227830:three_prime_UTR |
| TGTTACATGCGCCCTCCTGG+TGG | 0.616908 | 2_1:+79111926 | Msa0227830:CDS |
| GGAAAGTAGAGCTTGTTAGG+AGG | 0.624206 | 2_1:-79109999 | None:intergenic |
| GGGCCACGAGTAGCTGGAGA+AGG | 0.631012 | 2_1:+79112716 | Msa0227830:CDS |
| AGTCCTTCTCCAGCTACTCG+TGG | 0.642474 | 2_1:-79112719 | None:intergenic |
| GTGGCAATTATACTTTCACC+AGG | 0.648174 | 2_1:-79111959 | None:intergenic |
| CCAGGTGCAAGAATACCACC+AGG | 0.652338 | 2_1:-79111941 | None:intergenic |
| GGAAGCACGAAAGAAACCAC+CGG | 0.655389 | 2_1:+79112685 | Msa0227830:CDS |
| GTGCAAGAATACCACCAGGA+GGG | 0.659703 | 2_1:-79111937 | None:intergenic |
| ACTTAAACGTCAATTAGCTG+AGG | 0.660316 | 2_1:+79112649 | Msa0227830:CDS |
| GAAGTGGAAAGTGAAAAGCC+AGG | 0.671712 | 2_1:+79109747 | Msa0227830:CDS |
| AATTGTGAATCAAACAACGT+TGG | 0.696933 | 2_1:+79109542 | Msa0227830:five_prime_UTR |
| GGTGCAAGAATACCACCAGG+AGG | 0.743740 | 2_1:-79111938 | None:intergenic |
| AGCACGAAAGAAACCACCGG+AGG | 0.751824 | 2_1:+79112688 | Msa0227830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGTAAAAATTGTT+AGG | + | chr2_1:79110247-79110266 | Msa0227830:intron | 10.0% |
| !!! | CTTTATTTTAAATTTTCAAA+CGG | - | chr2_1:79113005-79113024 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTCTTTGTAGAT+AGG | - | chr2_1:79110350-79110369 | None:intergenic | 15.0% |
| !! | ATTATGAATAATTGAATTAG+AGG | + | chr2_1:79110474-79110493 | Msa0227830:intron | 15.0% |
| !!! | TTGAAAACAGATTTTATATT+TGG | - | chr2_1:79112390-79112409 | None:intergenic | 15.0% |
| !!! | ACATTTCAACTATATTTTTT+TGG | + | chr2_1:79112564-79112583 | Msa0227830:intron | 15.0% |
| !!! | TGTAATAAAAATGCTGTTTT+TGG | - | chr2_1:79109596-79109615 | None:intergenic | 20.0% |
| !!! | TTTTTGTGAAATAAAGTGAT+GGG | - | chr2_1:79109650-79109669 | None:intergenic | 20.0% |
| !!! | ATGTTTTGTTTTAGTTGTTT+TGG | + | chr2_1:79110099-79110118 | Msa0227830:intron | 20.0% |
| !! | TTAAGATTTATTGTAATGAG+TGG | + | chr2_1:79110173-79110192 | Msa0227830:intron | 20.0% |
| !! | AGTAAAAGATAATACATACT+AGG | - | chr2_1:79110412-79110431 | None:intergenic | 20.0% |
| !!! | TCATAGTTTTTTTGTTTGTT+TGG | + | chr2_1:79110564-79110583 | Msa0227830:intron | 20.0% |
| !! | TAATGACAAAAATAAGTGAA+TGG | - | chr2_1:79110780-79110799 | None:intergenic | 20.0% |
| !! | CAAATTATCATGTTATTCAT+AGG | + | chr2_1:79110870-79110889 | Msa0227830:intron | 20.0% |
| !!! | CTTCTAATTTTCAATTTTCT+AGG | - | chr2_1:79110942-79110961 | None:intergenic | 20.0% |
| !! | TGATATATAAGTGTTTGTTT+AGG | - | chr2_1:79111800-79111819 | None:intergenic | 20.0% |
| !! | TTAAACTATTTATCCAAACA+AGG | + | chr2_1:79111843-79111862 | Msa0227830:intron | 20.0% |
| !! | AAACATCATCATTAGTATTT+AGG | - | chr2_1:79111869-79111888 | None:intergenic | 20.0% |
| !! | TTTATCAGATATATACAATC+AGG | - | chr2_1:79112302-79112321 | None:intergenic | 20.0% |
| !!! | CATTTATGTTAACTAACTTT+TGG | - | chr2_1:79112339-79112358 | None:intergenic | 20.0% |
| !! | TTGAAATGTATAATCTTACA+GGG | - | chr2_1:79112553-79112572 | None:intergenic | 20.0% |
| !! | ACTAACTACTTCATTAATAA+GGG | - | chr2_1:79112923-79112942 | None:intergenic | 20.0% |
| !! | TACTAACTACTTCATTAATA+AGG | - | chr2_1:79112924-79112943 | None:intergenic | 20.0% |
| !! | ATTAATGAAGTAGTTAGTAA+AGG | + | chr2_1:79112925-79112944 | Msa0227830:intron | 20.0% |
| !!! | GTATTGTTAGTATTTTGTTT+AGG | - | chr2_1:79112973-79112992 | None:intergenic | 20.0% |
| !! | TGTTCTTAAATTTAATTCCT+TGG | + | chr2_1:79113511-79113530 | Msa0227830:three_prime_UTR | 20.0% |
| !! | CTCATTTCTAATAATATTTG+TGG | + | chr2_1:79113615-79113634 | Msa0227830:three_prime_UTR | 20.0% |
| !! | ATTTCTAATAATATTTGTGG+TGG | + | chr2_1:79113618-79113637 | Msa0227830:three_prime_UTR | 20.0% |
| !! | CTTTTTGTGAAATAAAGTGA+TGG | - | chr2_1:79109651-79109670 | None:intergenic | 25.0% |
| ! | AAATGTAAAAATTGTTAGGC+CGG | + | chr2_1:79110251-79110270 | Msa0227830:intron | 25.0% |
| ! | GTTTACATAAATCTCCTAAT+CGG | - | chr2_1:79110638-79110657 | None:intergenic | 25.0% |
| ! | AACATTATCATGTTACTCAT+AGG | + | chr2_1:79110827-79110846 | Msa0227830:intron | 25.0% |
| !! | TTAGTGACTATTTTGCAATT+TGG | + | chr2_1:79110898-79110917 | Msa0227830:intron | 25.0% |
| !!! | CAAACTTTTGAAACATATGA+TGG | - | chr2_1:79111030-79111049 | None:intergenic | 25.0% |
| !!! | TTTGTTGATAATGATCATCA+TGG | + | chr2_1:79111089-79111108 | Msa0227830:intron | 25.0% |
| ! | GAGGAACTAAAAAATTGTAT+TGG | + | chr2_1:79111252-79111271 | Msa0227830:intron | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | + | chr2_1:79111255-79111274 | Msa0227830:intron | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | + | chr2_1:79111259-79111278 | Msa0227830:intron | 25.0% |
| !! | ACAAACAGATAATGTCATTT+GGG | - | chr2_1:79111501-79111520 | None:intergenic | 25.0% |
| ! | AACAAACAGATAATGTCATT+TGG | - | chr2_1:79111502-79111521 | None:intergenic | 25.0% |
| !!! | ACATTATCTGTTTGTTTTAG+AGG | + | chr2_1:79111506-79111525 | Msa0227830:intron | 25.0% |
| !! | ATTCAAAGCATTTGATAGTT+TGG | - | chr2_1:79112014-79112033 | None:intergenic | 25.0% |
| !! | ACTATCAAATGCTTTGAATT+CGG | + | chr2_1:79112015-79112034 | Msa0227830:intron | 25.0% |
| ! | TACTAATTGTCTCACAAATT+TGG | + | chr2_1:79112048-79112067 | Msa0227830:intron | 25.0% |
| ! | ATTACAAATGAAAACTACGA+AGG | - | chr2_1:79112218-79112237 | None:intergenic | 25.0% |
| ! | GTTGAAATGTATAATCTTAC+AGG | - | chr2_1:79112554-79112573 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTGTTTCTTGTGA+AGG | + | chr2_1:79112616-79112635 | Msa0227830:intron | 25.0% |
| ! | TTTCAAAAACTAATGAGGAA+AGG | - | chr2_1:79112794-79112813 | None:intergenic | 25.0% |
| !!! | TTAGTATTTTGTTTAGGATG+GGG | - | chr2_1:79112967-79112986 | None:intergenic | 25.0% |
| !!! | GTTAGTATTTTGTTTAGGAT+GGG | - | chr2_1:79112968-79112987 | None:intergenic | 25.0% |
| !!! | TGTTAGTATTTTGTTTAGGA+TGG | - | chr2_1:79112969-79112988 | None:intergenic | 25.0% |
| ! | AAGTAGTTAATGAACTAGTT+AGG | + | chr2_1:79113022-79113041 | Msa0227830:intron | 25.0% |
| ! | AAATACTCTAAATGTGACAT+TGG | + | chr2_1:79113056-79113075 | Msa0227830:intron | 25.0% |
| ! | AATACTCTAAATGTGACATT+GGG | + | chr2_1:79113057-79113076 | Msa0227830:intron | 25.0% |
| ! | TTATCTACATAAATAAGCAC+TGG | + | chr2_1:79113107-79113126 | Msa0227830:intron | 25.0% |
| ! | GAGCTTATAGAAATAGTTAA+AGG | + | chr2_1:79113145-79113164 | Msa0227830:intron | 25.0% |
| ! | CGAAACAGTTATTTAGAAAA+CGG | - | chr2_1:79113355-79113374 | None:intergenic | 25.0% |
| ! | TACAAAAGATCTTTGACATA+AGG | - | chr2_1:79113491-79113510 | None:intergenic | 25.0% |
| ! | TCTTAAATTTAATTCCTTGG+AGG | + | chr2_1:79113514-79113533 | Msa0227830:three_prime_UTR | 25.0% |
| AATTGTGAATCAAACAACGT+TGG | + | chr2_1:79109542-79109561 | Msa0227830:five_prime_UTR | 30.0% | |
| ! | TTGTGGAAGATGGATTTATT+TGG | - | chr2_1:79109623-79109642 | None:intergenic | 30.0% |
| !! | ACTTTTGTAGAATGCCATTT+TGG | + | chr2_1:79109790-79109809 | Msa0227830:CDS | 30.0% |
| AGTTTGAAGAAACACATACA+AGG | - | chr2_1:79110023-79110042 | None:intergenic | 30.0% | |
| ! | AACTGATTCTGATTAATGTG+TGG | + | chr2_1:79110655-79110674 | Msa0227830:intron | 30.0% |
| !!! | TTTTGTTTTGAAGATGAACC+TGG | + | chr2_1:79110678-79110697 | Msa0227830:intron | 30.0% |
| ! | TGCTTTCTCAATTTTCGAAT+GGG | - | chr2_1:79110989-79111008 | None:intergenic | 30.0% |
| ! | ATGCTTTCTCAATTTTCGAA+TGG | - | chr2_1:79110990-79111009 | None:intergenic | 30.0% |
| !! | AATTGAGAAAGCATTCATCT+TGG | + | chr2_1:79110996-79111015 | Msa0227830:intron | 30.0% |
| !! | ATTGAGAAAGCATTCATCTT+GGG | + | chr2_1:79110997-79111016 | Msa0227830:intron | 30.0% |
| !!! | TGCTATTTTGACTAGTTGAT+AGG | + | chr2_1:79111058-79111077 | Msa0227830:intron | 30.0% |
| GGAAAAAAAGAATAAGCAAG+TGG | + | chr2_1:79111153-79111172 | Msa0227830:intron | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+GGG | + | chr2_1:79111173-79111192 | Msa0227830:intron | 30.0% | |
| !!! | TTTTTTAGTTCCTCCAAATG+AGG | - | chr2_1:79111246-79111265 | None:intergenic | 30.0% |
| CTAAAAAATTGTATTGGAGG+AGG | + | chr2_1:79111258-79111277 | Msa0227830:intron | 30.0% | |
| !!! | TCTGTTTGTTTTAGAGGTAA+TGG | + | chr2_1:79111512-79111531 | Msa0227830:intron | 30.0% |
| ! | ACTGTTTTCTTAAGCTATCA+TGG | - | chr2_1:79111714-79111733 | None:intergenic | 30.0% |
| !! | ATTAGTATTTAGGCCTTGTT+TGG | - | chr2_1:79111859-79111878 | None:intergenic | 30.0% |
| ! | TTTGGTAACACAAGTTTAGA+AGG | - | chr2_1:79111996-79112015 | None:intergenic | 30.0% |
| TTTGTGAGACAATTAGTAAG+AGG | - | chr2_1:79112046-79112065 | None:intergenic | 30.0% | |
| ATAAATGCTGATCAAGTTCT+TGG | + | chr2_1:79112352-79112371 | Msa0227830:intron | 30.0% | |
| ! | TTGACGTTTAAGTTTATCCA+TGG | - | chr2_1:79112642-79112661 | None:intergenic | 30.0% |
| !! | AAGGACTTGTTATAGATGAA+TGG | + | chr2_1:79112735-79112754 | Msa0227830:CDS | 30.0% |
| !! | AGGACTTGTTATAGATGAAT+GGG | + | chr2_1:79112736-79112755 | Msa0227830:CDS | 30.0% |
| ! | GGAGTTTTCAAAAACTAATG+AGG | - | chr2_1:79112799-79112818 | None:intergenic | 30.0% |
| GATACTTAATATGAGACGAA+GGG | - | chr2_1:79112820-79112839 | None:intergenic | 30.0% | |
| AATGAAGTAGTTAGTAAAGG+AGG | + | chr2_1:79112928-79112947 | Msa0227830:intron | 30.0% | |
| ATACTCTAAATGTGACATTG+GGG | + | chr2_1:79113058-79113077 | Msa0227830:intron | 30.0% | |
| !! | ACTATTTCTATAAGCTCTCT+CGG | - | chr2_1:79113142-79113161 | None:intergenic | 30.0% |
| ACAGTTATTTAGAAAACGGA+AGG | - | chr2_1:79113351-79113370 | None:intergenic | 30.0% | |
| !! | TCTCTTCATACCACTTTTAT+AGG | - | chr2_1:79113568-79113587 | None:intergenic | 30.0% |
| !!! | ATAAAGTGATGGGTCTTTTG+TGG | - | chr2_1:79109640-79109659 | None:intergenic | 35.0% |
| AATTGAAGTTTCCGGCAAAT+GGG | - | chr2_1:79109701-79109720 | None:intergenic | 35.0% | |
| AAATTGAAGTTTCCGGCAAA+TGG | - | chr2_1:79109702-79109721 | None:intergenic | 35.0% | |
| !! | TTGTGACTTGTTTGCCAAAA+TGG | - | chr2_1:79109807-79109826 | None:intergenic | 35.0% |
| GTAGTAGTTGAAGATGATGA+AGG | - | chr2_1:79109831-79109850 | None:intergenic | 35.0% | |
| AACATTGTGCATGTAAGAAG+TGG | - | chr2_1:79109865-79109884 | None:intergenic | 35.0% | |
| CTAAATCTTTGCTTCCTACT+AGG | + | chr2_1:79109958-79109977 | Msa0227830:CDS | 35.0% | |
| !!! | AGTTGTTTTGGTCTCAAGTA+TGG | + | chr2_1:79110111-79110130 | Msa0227830:intron | 35.0% |
| !! | TTCATAAGTTCTAGTTCGAC+TGG | + | chr2_1:79110220-79110239 | Msa0227830:intron | 35.0% |
| TTGTGTGTGTGAGTTTCTAT+TGG | + | chr2_1:79110310-79110329 | Msa0227830:intron | 35.0% | |
| AGCCCAAGAATCGATTAATT+TGG | + | chr2_1:79110600-79110619 | Msa0227830:intron | 35.0% | |
| GCCCAAGAATCGATTAATTT+GGG | + | chr2_1:79110601-79110620 | Msa0227830:intron | 35.0% | |
| ! | CCCCAAATTAATCGATTCTT+GGG | - | chr2_1:79110605-79110624 | None:intergenic | 35.0% |
| ! | CCCAAGAATCGATTAATTTG+GGG | + | chr2_1:79110602-79110621 | Msa0227830:intron | 35.0% |
| ! | TCCCCAAATTAATCGATTCT+TGG | - | chr2_1:79110606-79110625 | None:intergenic | 35.0% |
| ACATAAATCTCCTAATCGGT+GGG | - | chr2_1:79110634-79110653 | None:intergenic | 35.0% | |
| TACATAAATCTCCTAATCGG+TGG | - | chr2_1:79110635-79110654 | None:intergenic | 35.0% | |
| !! | TTGAGAAAGCATTCATCTTG+GGG | + | chr2_1:79110998-79111017 | Msa0227830:intron | 35.0% |
| TAAGCAAGTGGAAGAAATAG+AGG | + | chr2_1:79111165-79111184 | Msa0227830:intron | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | + | chr2_1:79111172-79111191 | Msa0227830:intron | 35.0% | |
| AATACAAAACCCTCCTCATT+TGG | + | chr2_1:79111230-79111249 | Msa0227830:intron | 35.0% | |
| !! | ATGTCATTTGGGCTTTGTTT+GGG | - | chr2_1:79111490-79111509 | None:intergenic | 35.0% |
| !! | AATGTCATTTGGGCTTTGTT+TGG | - | chr2_1:79111491-79111510 | None:intergenic | 35.0% |
| ! | ACACATCTGAGCTTTTCTAT+TGG | + | chr2_1:79111598-79111617 | Msa0227830:intron | 35.0% |
| AATAAGCTGAAAACGTCTTG+TGG | - | chr2_1:79111679-79111698 | None:intergenic | 35.0% | |
| !! | AACTTTTAGGTGCAGTTGTT+TGG | - | chr2_1:79111907-79111926 | None:intergenic | 35.0% |
| AACCAACTGATCAAAAAAGC+AGG | + | chr2_1:79112110-79112129 | Msa0227830:CDS | 35.0% | |
| ACCAACTGATCAAAAAAGCA+GGG | + | chr2_1:79112111-79112130 | Msa0227830:CDS | 35.0% | |
| ! | CAATTTGCTTAGCAACAGAA+AGG | - | chr2_1:79112272-79112291 | None:intergenic | 35.0% |
| TAGCTGTAGAGCAAATTCTT+CGG | + | chr2_1:79112498-79112517 | Msa0227830:CDS | 35.0% | |
| !!! | AATTCTTCGGGTTGTTTTTC+TGG | + | chr2_1:79112511-79112530 | Msa0227830:CDS | 35.0% |
| ATAATCTTACAGGGCTGTTT+CGG | - | chr2_1:79112544-79112563 | None:intergenic | 35.0% | |
| ACTTAAACGTCAATTAGCTG+AGG | + | chr2_1:79112649-79112668 | Msa0227830:CDS | 35.0% | |
| CGATACTTAATATGAGACGA+AGG | - | chr2_1:79112821-79112840 | None:intergenic | 35.0% | |
| TACTCTAAATGTGACATTGG+GGG | + | chr2_1:79113059-79113078 | Msa0227830:intron | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr2_1:79113211-79113230 | None:intergenic | 35.0% |
| GGTCAGAAGAAAAAAGAAAC+AGG | - | chr2_1:79113470-79113489 | None:intergenic | 35.0% | |
| AGGCACTAATCTGTCAATTA+TGG | + | chr2_1:79113534-79113553 | Msa0227830:three_prime_UTR | 35.0% | |
| CATAGCTATCTACAAGTTGT+AGG | - | chr2_1:79113708-79113727 | None:intergenic | 35.0% | |
| TGTGAATCAAACAACGTTGG+TGG | + | chr2_1:79109545-79109564 | Msa0227830:five_prime_UTR | 40.0% | |
| TTGCCGGAAACTTCAATTTC+CGG | + | chr2_1:79109703-79109722 | Msa0227830:five_prime_UTR | 40.0% | |
| TCACCGGAAATTGAAGTTTC+CGG | - | chr2_1:79109709-79109728 | None:intergenic | 40.0% | |
| TTCAATTTCCGGTGAGATTC+CGG | + | chr2_1:79109714-79109733 | Msa0227830:five_prime_UTR | 40.0% | |
| !!! | TTCCACTTCCATTTTTTCGC+CGG | - | chr2_1:79109736-79109755 | None:intergenic | 40.0% |
| ! | CAAACTTTTCCATCAGATCC+TGG | - | chr2_1:79109768-79109787 | None:intergenic | 40.0% |
| CAGGATCTGATGGAAAAGTT+TGG | + | chr2_1:79109766-79109785 | Msa0227830:CDS | 40.0% | |
| GAAACTGTAGCTGAAGATTG+AGG | - | chr2_1:79109930-79109949 | None:intergenic | 40.0% | |
| ! | CAAGGAAAGTAGAGCTTGTT+AGG | - | chr2_1:79110005-79110024 | None:intergenic | 40.0% |
| TGGTCTCAAGTATGGTGAAT+AGG | + | chr2_1:79110119-79110138 | Msa0227830:intron | 40.0% | |
| TAGAAACTCACACACACAAG+TGG | - | chr2_1:79110309-79110328 | None:intergenic | 40.0% | |
| ATGAACCTGGTAAGCAAGTT+AGG | + | chr2_1:79110691-79110710 | Msa0227830:CDS | 40.0% | |
| CAAGTCTCATGTAGCTTTCA+AGG | + | chr2_1:79110740-79110759 | Msa0227830:CDS | 40.0% | |
| !! | CATGGCTTTGTTTGCAAGTT+TGG | + | chr2_1:79111107-79111126 | Msa0227830:intron | 40.0% |
| !! | GCTTTGTTTGCAAGTTTGGA+GGG | + | chr2_1:79111111-79111130 | Msa0227830:intron | 40.0% |
| ! | CTTTGTTTGCAAGTTTGGAG+GGG | + | chr2_1:79111112-79111131 | Msa0227830:intron | 40.0% |
| GAAATAGAGGAAAATGGGAG+AGG | + | chr2_1:79111178-79111197 | Msa0227830:intron | 40.0% | |
| TTAGTTCCTCCAAATGAGGA+GGG | - | chr2_1:79111242-79111261 | None:intergenic | 40.0% | |
| ! | TTTAGTTCCTCCAAATGAGG+AGG | - | chr2_1:79111243-79111262 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | + | chr2_1:79111265-79111284 | Msa0227830:intron | 40.0% |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | + | chr2_1:79111266-79111285 | Msa0227830:intron | 40.0% |
| ! | TTTGAGGGGTGCAAAATAAG+AGG | - | chr2_1:79111440-79111459 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAAGGCTTTGA+GGG | - | chr2_1:79111455-79111474 | None:intergenic | 40.0% |
| ACTCTTTAGATCGCTGCTAT+GGG | + | chr2_1:79111562-79111581 | Msa0227830:intron | 40.0% | |
| GTGGCAATTATACTTTCACC+AGG | - | chr2_1:79111962-79111981 | None:intergenic | 40.0% | |
| ! | GGTGAAAGTATAATTGCCAC+TGG | + | chr2_1:79111962-79111981 | Msa0227830:CDS | 40.0% |
| TTAGAAGGCGATATTACCAG+TGG | - | chr2_1:79111981-79112000 | None:intergenic | 40.0% | |
| !! | GTTGGTTTCTCGTTGTTTTC+TGG | - | chr2_1:79112097-79112116 | None:intergenic | 40.0% |
| !!! | ACCCTGCTTTTTTGATCAGT+TGG | - | chr2_1:79112115-79112134 | None:intergenic | 40.0% |
| ! | ATCATGAGCCTAAAAGTGCA+AGG | + | chr2_1:79112145-79112164 | Msa0227830:CDS | 40.0% |
| ! | CCATTTCACCTTGCACTTTT+AGG | - | chr2_1:79112156-79112175 | None:intergenic | 40.0% |
| ! | CCTAAAAGTGCAAGGTGAAA+TGG | + | chr2_1:79112153-79112172 | Msa0227830:CDS | 40.0% |
| !! | AATGGACTATGTACCAGAAC+TGG | + | chr2_1:79112171-79112190 | Msa0227830:CDS | 40.0% |
| AAATGGCACATTACCAGTTC+TGG | - | chr2_1:79112187-79112206 | None:intergenic | 40.0% | |
| !! | CTACGAAGGTTGATGAGAAA+TGG | - | chr2_1:79112204-79112223 | None:intergenic | 40.0% |
| AGCTGTAGAGCAAATTCTTC+GGG | + | chr2_1:79112499-79112518 | Msa0227830:CDS | 40.0% | |
| ! | TTTGTTTCTTGTGAAGGCCA+TGG | + | chr2_1:79112622-79112641 | Msa0227830:intron | 40.0% |
| GTAGTTAGTAAAGGAGGTCA+AGG | + | chr2_1:79112934-79112953 | Msa0227830:intron | 40.0% | |
| TTCGTTGTTCCTTGTGTAGA+AGG | + | chr2_1:79113371-79113390 | Msa0227830:intron | 40.0% | |
| TCCTTGTGTAGAAGGAAAGA+AGG | + | chr2_1:79113379-79113398 | Msa0227830:intron | 40.0% | |
| CCTTGTGTAGAAGGAAAGAA+GGG | + | chr2_1:79113380-79113399 | Msa0227830:intron | 40.0% | |
| GGAAAGAAGGGAAAGATACT+TGG | + | chr2_1:79113392-79113411 | Msa0227830:CDS | 40.0% | |
| GGTTGAGTGACCTATAAAAG+TGG | + | chr2_1:79113555-79113574 | Msa0227830:three_prime_UTR | 40.0% | |
| ! | GATGGGTCTTTTGTGGAAGA+TGG | - | chr2_1:79109633-79109652 | None:intergenic | 45.0% |
| GGCAAATGGGTCGTTGAATT+GGG | - | chr2_1:79109688-79109707 | None:intergenic | 45.0% | |
| CAATTCAACGACCCATTTGC+CGG | + | chr2_1:79109687-79109706 | Msa0227830:five_prime_UTR | 45.0% | |
| !!! | TTTTTTCGCCGGAATCTCAC+CGG | - | chr2_1:79109725-79109744 | None:intergenic | 45.0% |
| GTGAGATTCCGGCGAAAAAA+TGG | + | chr2_1:79109725-79109744 | Msa0227830:exon | 45.0% | |
| TTCCGGCGAAAAAATGGAAG+TGG | + | chr2_1:79109731-79109750 | Msa0227830:exon | 45.0% | |
| GAAGTGGAAAGTGAAAAGCC+AGG | + | chr2_1:79109747-79109766 | Msa0227830:CDS | 45.0% | |
| AGTGAAAAGCCAGGATCTGA+TGG | + | chr2_1:79109756-79109775 | Msa0227830:CDS | 45.0% | |
| AGACGAAGTCTTCTCCTAGT+AGG | - | chr2_1:79109975-79109994 | None:intergenic | 45.0% | |
| !! | GGAAAGTAGAGCTTGTTAGG+AGG | - | chr2_1:79110002-79110021 | None:intergenic | 45.0% |
| TTGTGACTGAGGTTTGAACC+CGG | + | chr2_1:79110277-79110296 | Msa0227830:intron | 45.0% | |
| CTCATGTAGCTTTCAAGGTC+TGG | + | chr2_1:79110745-79110764 | Msa0227830:intron | 45.0% | |
| !! | GGCTTTGTTTGCAAGTTTGG+AGG | + | chr2_1:79111110-79111129 | Msa0227830:intron | 45.0% |
| TTTGCAAGTTTGGAGGGGAA+GGG | + | chr2_1:79111117-79111136 | Msa0227830:intron | 45.0% | |
| ATAGAGGAAAATGGGAGAGG+AGG | + | chr2_1:79111181-79111200 | Msa0227830:intron | 45.0% | |
| TAGAGGAAAATGGGAGAGGA+GGG | + | chr2_1:79111182-79111201 | Msa0227830:intron | 45.0% | |
| ACAAAACCCTCCTCATTTGG+AGG | + | chr2_1:79111233-79111252 | Msa0227830:intron | 45.0% | |
| ! | TGTATTGGAGGAGGGTTTTG+GGG | + | chr2_1:79111267-79111286 | Msa0227830:intron | 45.0% |
| !! | AGGAAAGGAAAGGCTTTGAG+GGG | - | chr2_1:79111454-79111473 | None:intergenic | 45.0% |
| GAAGGAAAGGAAAGGCTTTG+AGG | - | chr2_1:79111456-79111475 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr2_1:79111478-79111497 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr2_1:79111479-79111498 | None:intergenic | 45.0% |
| !! | TTGGGCTTTGTTTGGGAGTT+TGG | - | chr2_1:79111483-79111502 | None:intergenic | 45.0% |
| CATAGCAGCGATCTAAAGAG+TGG | - | chr2_1:79111563-79111582 | None:intergenic | 45.0% | |
| CACTCTTTAGATCGCTGCTA+TGG | + | chr2_1:79111561-79111580 | Msa0227830:intron | 45.0% | |
| ! | GGGCGCATGTAACAACTTTT+AGG | - | chr2_1:79111920-79111939 | None:intergenic | 45.0% |
| !! | GGTTTCTCGTTGTTTTCTGG+TGG | - | chr2_1:79112094-79112113 | None:intergenic | 45.0% |
| ! | ACATTGGGGGCTTGTTTGAA+TGG | + | chr2_1:79113072-79113091 | Msa0227830:intron | 45.0% |
| CCCTTCTTTCCTTCTACACA+AGG | - | chr2_1:79113383-79113402 | None:intergenic | 45.0% | |
| TTGACAGATTAGTGCCTCCA+AGG | - | chr2_1:79113531-79113550 | None:intergenic | 45.0% | |
| CGGCAAATGGGTCGTTGAAT+TGG | - | chr2_1:79109689-79109708 | None:intergenic | 50.0% | |
| CAAACCTCAGTCACAACGTC+CGG | - | chr2_1:79110273-79110292 | None:intergenic | 50.0% | |
| TGTGACTGAGGTTTGAACCC+GGG | + | chr2_1:79110278-79110297 | Msa0227830:intron | 50.0% | |
| !! | GCACTCCTAACTTGCTTACC+AGG | - | chr2_1:79110699-79110718 | None:intergenic | 50.0% |
| GTTTGCAAGTTTGGAGGGGA+AGG | + | chr2_1:79111116-79111135 | Msa0227830:intron | 50.0% | |
| AAAATGGGAGAGGAGGGCTT+TGG | + | chr2_1:79111188-79111207 | Msa0227830:intron | 50.0% | |
| AAATGGGAGAGGAGGGCTTT+GGG | + | chr2_1:79111189-79111208 | Msa0227830:intron | 50.0% | |
| !! | GTATTGGAGGAGGGTTTTGG+GGG | + | chr2_1:79111268-79111287 | Msa0227830:intron | 50.0% |
| !!! | TATTGGAGGAGGGTTTTGGG+GGG | + | chr2_1:79111269-79111288 | Msa0227830:intron | 50.0% |
| TTGGAGGGGAAGGAAAGGAA+AGG | - | chr2_1:79111464-79111483 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr2_1:79111480-79111499 | None:intergenic | 50.0% |
| GTGCAAGAATACCACCAGGA+GGG | - | chr2_1:79111940-79111959 | None:intergenic | 50.0% | |
| CTCTTTGCTCGTCAAACTGC+AGG | - | chr2_1:79112472-79112491 | None:intergenic | 50.0% | |
| ! | TTACAGGGCTGTTTCGGTCA+GGG | - | chr2_1:79112538-79112557 | None:intergenic | 50.0% |
| ! | GGAAGCACGAAAGAAACCAC+CGG | + | chr2_1:79112685-79112704 | Msa0227830:CDS | 50.0% |
| AAGATACTTGGCCAAGCAGC+AGG | + | chr2_1:79113404-79113423 | Msa0227830:CDS | 50.0% | |
| AACACCTTCAACCTGCTGCT+TGG | - | chr2_1:79113418-79113437 | None:intergenic | 50.0% | |
| ACACACAAGTGGAGAAGCCC+GGG | - | chr2_1:79110298-79110317 | None:intergenic | 55.0% | |
| CACACACAAGTGGAGAAGCC+CGG | - | chr2_1:79110299-79110318 | None:intergenic | 55.0% | |
| ! | GGGGACTAATCCCACCGATT+AGG | + | chr2_1:79110621-79110640 | Msa0227830:intron | 55.0% |
| CAAGTTTGGAGGGGAAGGGA+GGG | + | chr2_1:79111121-79111140 | Msa0227830:intron | 55.0% | |
| AAGTTTGGAGGGGAAGGGAG+GGG | + | chr2_1:79111122-79111141 | Msa0227830:intron | 55.0% | |
| AATGGGAGAGGAGGGCTTTG+GGG | + | chr2_1:79111190-79111209 | Msa0227830:intron | 55.0% | |
| !!! | AGGAGGGTTTTGGGGGGTTT+TGG | + | chr2_1:79111275-79111294 | Msa0227830:intron | 55.0% |
| !!! | AGGGTTTTGGGGGGTTTTGG+AGG | + | chr2_1:79111278-79111297 | Msa0227830:intron | 55.0% |
| !!! | GGGTTTTGGGGGGTTTTGGA+GGG | + | chr2_1:79111279-79111298 | Msa0227830:intron | 55.0% |
| GGAGTTTGGAGGGGAAGGAA+AGG | - | chr2_1:79111469-79111488 | None:intergenic | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+AGG | - | chr2_1:79111474-79111493 | None:intergenic | 55.0% | |
| AGTTGTTACATGCGCCCTCC+TGG | + | chr2_1:79111923-79111942 | Msa0227830:CDS | 55.0% | |
| GGTGCAAGAATACCACCAGG+AGG | - | chr2_1:79111941-79111960 | None:intergenic | 55.0% | |
| CCAGGTGCAAGAATACCACC+AGG | - | chr2_1:79111944-79111963 | None:intergenic | 55.0% | |
| CCTGGTGGTATTCTTGCACC+TGG | + | chr2_1:79111941-79111960 | Msa0227830:CDS | 55.0% | |
| ! | CTTACAGGGCTGTTTCGGTC+AGG | - | chr2_1:79112539-79112558 | None:intergenic | 55.0% |
| ACGTCAATTAGCTGAGGCCG+AGG | + | chr2_1:79112655-79112674 | Msa0227830:CDS | 55.0% | |
| TCGTGCTTCCAATGCAGCCT+CGG | - | chr2_1:79112675-79112694 | None:intergenic | 55.0% | |
| AGCACGAAAGAAACCACCGG+AGG | + | chr2_1:79112688-79112707 | Msa0227830:CDS | 55.0% | |
| AAGAAACCACCGGAGGAGAC+AGG | + | chr2_1:79112695-79112714 | Msa0227830:CDS | 55.0% | |
| AGAAACCACCGGAGGAGACA+GGG | + | chr2_1:79112696-79112715 | Msa0227830:CDS | 55.0% | |
| AGTCCTTCTCCAGCTACTCG+TGG | - | chr2_1:79112722-79112741 | None:intergenic | 55.0% | |
| ! | TTGGCCAAGCAGCAGGTTGA+AGG | + | chr2_1:79113411-79113430 | Msa0227830:CDS | 55.0% |
| TAGGCCGGACGTTGTGACTG+AGG | + | chr2_1:79110266-79110285 | Msa0227830:intron | 60.0% | |
| GCAAGTTTGGAGGGGAAGGG+AGG | + | chr2_1:79111120-79111139 | Msa0227830:intron | 60.0% | |
| ! | ATGGGAGAGGAGGGCTTTGG+GGG | + | chr2_1:79111191-79111210 | Msa0227830:intron | 60.0% |
| TGTTACATGCGCCCTCCTGG+TGG | + | chr2_1:79111926-79111945 | Msa0227830:CDS | 60.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | chr2_1:79111126-79111145 | Msa0227830:intron | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | + | chr2_1:79111132-79111151 | Msa0227830:intron | 65.0% | |
| !! | TGGGAGAGGAGGGCTTTGGG+GGG | + | chr2_1:79111192-79111211 | Msa0227830:intron | 65.0% |
| AGCTGAGGCCGAGGCTGCAT+TGG | + | chr2_1:79112664-79112683 | Msa0227830:CDS | 65.0% | |
| ACTCGTGGCCCTGTCTCCTC+CGG | - | chr2_1:79112707-79112726 | None:intergenic | 65.0% | |
| GAGACAGGGCCACGAGTAGC+TGG | + | chr2_1:79112710-79112729 | Msa0227830:CDS | 65.0% | |
| GGGCCACGAGTAGCTGGAGA+AGG | + | chr2_1:79112716-79112735 | Msa0227830:CDS | 65.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | + | chr2_1:79111131-79111150 | Msa0227830:intron | 70.0% | |
| CGTGGCCCTGTCTCCTCCGG+TGG | - | chr2_1:79112704-79112723 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79109538 | 79113762 | 79109538 | ID=Msa0227830;Name=Msa0227830 |
| chr2_1 | mRNA | 79109538 | 79113762 | 79109538 | ID=Msa0227830-mRNA-1;Parent=Msa0227830;Name=Msa0227830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=206|1|1|1|1|1|7|307|271 |
| chr2_1 | exon | 79109538 | 79110023 | 79109538 | ID=Msa0227830-mRNA-1:exon:24070;Parent=Msa0227830-mRNA-1 |
| chr2_1 | exon | 79110691 | 79110761 | 79110691 | ID=Msa0227830-mRNA-1:exon:24071;Parent=Msa0227830-mRNA-1 |
| chr2_1 | exon | 79111902 | 79111983 | 79111902 | ID=Msa0227830-mRNA-1:exon:24072;Parent=Msa0227830-mRNA-1 |
| chr2_1 | exon | 79112074 | 79112192 | 79112074 | ID=Msa0227830-mRNA-1:exon:24073;Parent=Msa0227830-mRNA-1 |
| chr2_1 | exon | 79112476 | 79112553 | 79112476 | ID=Msa0227830-mRNA-1:exon:24074;Parent=Msa0227830-mRNA-1 |
| chr2_1 | exon | 79112638 | 79112757 | 79112638 | ID=Msa0227830-mRNA-1:exon:24075;Parent=Msa0227830-mRNA-1 |
| chr2_1 | exon | 79113390 | 79113762 | 79113390 | ID=Msa0227830-mRNA-1:exon:24076;Parent=Msa0227830-mRNA-1 |
| chr2_1 | five_prime_UTR | 79109538 | 79109743 | 79109538 | ID=Msa0227830-mRNA-1:five_prime_utr;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79109744 | 79110023 | 79109744 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79110691 | 79110761 | 79110691 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79111902 | 79111983 | 79111902 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79112074 | 79112192 | 79112074 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79112476 | 79112553 | 79112476 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79112638 | 79112757 | 79112638 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | CDS | 79113390 | 79113455 | 79113390 | ID=Msa0227830-mRNA-1:cds;Parent=Msa0227830-mRNA-1 |
| chr2_1 | three_prime_UTR | 79113456 | 79113762 | 79113456 | ID=Msa0227830-mRNA-1:three_prime_utr;Parent=Msa0227830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
