Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227890 | KEH39063.1 | 84.722 | 72 | 11 | 0 | 1 | 72 | 1 | 72 | 1.11e-36 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227890 | A0A072VC84 | 84.722 | 72 | 11 | 0 | 1 | 72 | 1 | 72 | 5.29e-37 | 128 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227890 | Msa0261540 | 0.886477 | 3.306992e-72 | -8.615850e-47 |
| Msa0227890 | Msa0305020 | 0.843759 | 1.149666e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227890 | MtrunA17_Chr2g0323751 | 84.722 | 72 | 11 | 0 | 1 | 72 | 1 | 72 | 1.02e-40 | 128 |
| Msa0227890 | MtrunA17_Chr2g0323741 | 86.111 | 72 | 9 | 1 | 1 | 72 | 1 | 71 | 7.37e-40 | 126 |
| Msa0227890 | MtrunA17_Chr2g0323761 | 75.000 | 72 | 14 | 2 | 1 | 72 | 1 | 68 | 6.07e-32 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAGACGAGTTCGGTTT+TGG | 0.261084 | 2_1:-79152512 | None:intergenic |
| GCTGATTTGCACTTATGAAT+TGG | 0.319739 | 2_1:-79152474 | None:intergenic |
| TGAGTTACTTGAACCGTGTT+TGG | 0.383610 | 2_1:+79152412 | Msa0227890:CDS |
| TTGCACTTATGAATTGGATC+AGG | 0.422761 | 2_1:-79152468 | None:intergenic |
| CATAAGTGCAAATCAGCTCT+TGG | 0.437934 | 2_1:+79152480 | Msa0227890:CDS |
| GTTGTCCAGCGTCGTTGTAT+CGG | 0.511337 | 2_1:+79152566 | Msa0227890:CDS |
| GATGGCAGCAACTGTGGCTG+TGG | 0.512055 | 2_1:+79152434 | Msa0227890:CDS |
| GAATGCTGACAAAGCACCAC+CGG | 0.532950 | 2_1:-79152538 | None:intergenic |
| CGGCGGAGAAGAGACGAGTT+CGG | 0.533512 | 2_1:-79152518 | None:intergenic |
| GCAACTGTGGCTGTGGCACA+AGG | 0.545391 | 2_1:+79152441 | Msa0227890:CDS |
| TGCACTTATGAATTGGATCA+GGG | 0.549628 | 2_1:-79152467 | None:intergenic |
| ACTCGTCTCTTCTCCGCCGG+TGG | 0.562949 | 2_1:+79152522 | Msa0227890:CDS |
| TGCTTCCGATACAACGACGC+TGG | 0.592056 | 2_1:-79152571 | None:intergenic |
| CGAACTCGTCTCTTCTCCGC+CGG | 0.592246 | 2_1:+79152519 | Msa0227890:CDS |
| TTACTTGAACCGTGTTTGGA+TGG | 0.625686 | 2_1:+79152416 | Msa0227890:CDS |
| GATACAACGACGCTGGACAA+CGG | 0.631291 | 2_1:-79152564 | None:intergenic |
| TTTCTCCTCAGAACTCATGA+CGG | 0.633585 | 2_1:-79152595 | None:intergenic |
| TGTTTGGATGGCAGCAACTG+TGG | 0.640468 | 2_1:+79152428 | Msa0227890:CDS |
| CAGTTGCTGCCATCCAAACA+CGG | 0.657329 | 2_1:-79152425 | None:intergenic |
| TGCTGACAAAGCACCACCGG+CGG | 0.666936 | 2_1:-79152535 | None:intergenic |
| AGCAACCGTCATGAGTTCTG+AGG | 0.673023 | 2_1:+79152590 | Msa0227890:CDS |
| ACTTATGAATTGGATCAGGG+TGG | 0.719346 | 2_1:-79152464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACTACATTTTTTTGTTT+AGG | + | chr2_1:79153594-79153613 | Msa0227890:intron | 15.0% |
| !!! | ATACTACATTTTTTTGTTTA+GGG | + | chr2_1:79153595-79153614 | Msa0227890:intron | 15.0% |
| !!! | TATACTACATTTTTTTGTTT+AGG | + | chr2_1:79153594-79153613 | Msa0227890:intron | 15.0% |
| !!! | ATACTACATTTTTTTGTTTA+GGG | + | chr2_1:79153595-79153614 | Msa0227890:intron | 15.0% |
| !! | ATTCAAGAAAACAACATATA+GGG | - | chr2_1:79152737-79152756 | None:intergenic | 20.0% |
| !!! | TTTTCTTGAATGAGAAATAT+TGG | + | chr2_1:79152746-79152765 | Msa0227890:intron | 20.0% |
| !! | TTTCTTGAATGAGAAATATT+GGG | + | chr2_1:79152747-79152766 | Msa0227890:intron | 20.0% |
| !!! | TTGATGAGTATTTTTTCATT+TGG | + | chr2_1:79153024-79153043 | Msa0227890:intron | 20.0% |
| !! | TGCTAAAAGTTAGTTAATTT+AGG | + | chr2_1:79153050-79153069 | Msa0227890:intron | 20.0% |
| !! | AAATCAAACATATGCAAAAA+AGG | + | chr2_1:79153457-79153476 | Msa0227890:intron | 20.0% |
| !! | ATTCAAGAAAACAACATATA+GGG | - | chr2_1:79152737-79152756 | None:intergenic | 20.0% |
| !!! | TTTTCTTGAATGAGAAATAT+TGG | + | chr2_1:79152746-79152765 | Msa0227890:intron | 20.0% |
| !! | TTTCTTGAATGAGAAATATT+GGG | + | chr2_1:79152747-79152766 | Msa0227890:intron | 20.0% |
| !!! | TTGATGAGTATTTTTTCATT+TGG | + | chr2_1:79153024-79153043 | Msa0227890:intron | 20.0% |
| !! | TGCTAAAAGTTAGTTAATTT+AGG | + | chr2_1:79153050-79153069 | Msa0227890:intron | 20.0% |
| !! | AAATCAAACATATGCAAAAA+AGG | + | chr2_1:79153457-79153476 | Msa0227890:intron | 20.0% |
| ! | AAGTTATGTACATGAATTGT+TGG | + | chr2_1:79152652-79152671 | Msa0227890:intron | 25.0% |
| ! | AGTTATGTACATGAATTGTT+GGG | + | chr2_1:79152653-79152672 | Msa0227890:intron | 25.0% |
| ! | CATTCAAGAAAACAACATAT+AGG | - | chr2_1:79152738-79152757 | None:intergenic | 25.0% |
| ! | TGCAAAATTTCCTTGAATAT+TGG | + | chr2_1:79152868-79152887 | Msa0227890:intron | 25.0% |
| ! | TATACAAGTGAATGAAATCA+AGG | + | chr2_1:79152901-79152920 | Msa0227890:intron | 25.0% |
| ! | TCTAAGGAATATTTCATGAT+AGG | - | chr2_1:79152958-79152977 | None:intergenic | 25.0% |
| ! | GTAGACTTATTTATAGTCTA+AGG | - | chr2_1:79152974-79152993 | None:intergenic | 25.0% |
| ! | GTCAAGAAAATTGTTCAAAA+CGG | - | chr2_1:79153319-79153338 | None:intergenic | 25.0% |
| ! | GTTGAAGAAAAAGTAATACA+AGG | + | chr2_1:79153494-79153513 | Msa0227890:intron | 25.0% |
| ! | AATTTAACACACATAAGCAT+CGG | - | chr2_1:79153564-79153583 | None:intergenic | 25.0% |
| ! | AAGTTATGTACATGAATTGT+TGG | + | chr2_1:79152652-79152671 | Msa0227890:intron | 25.0% |
| ! | AGTTATGTACATGAATTGTT+GGG | + | chr2_1:79152653-79152672 | Msa0227890:intron | 25.0% |
| ! | CATTCAAGAAAACAACATAT+AGG | - | chr2_1:79152738-79152757 | None:intergenic | 25.0% |
| ! | TGCAAAATTTCCTTGAATAT+TGG | + | chr2_1:79152868-79152887 | Msa0227890:intron | 25.0% |
| ! | TATACAAGTGAATGAAATCA+AGG | + | chr2_1:79152901-79152920 | Msa0227890:intron | 25.0% |
| ! | TCTAAGGAATATTTCATGAT+AGG | - | chr2_1:79152958-79152977 | None:intergenic | 25.0% |
| ! | GTAGACTTATTTATAGTCTA+AGG | - | chr2_1:79152974-79152993 | None:intergenic | 25.0% |
| ! | GTCAAGAAAATTGTTCAAAA+CGG | - | chr2_1:79153319-79153338 | None:intergenic | 25.0% |
| ! | GTTGAAGAAAAAGTAATACA+AGG | + | chr2_1:79153494-79153513 | Msa0227890:intron | 25.0% |
| ! | AATTTAACACACATAAGCAT+CGG | - | chr2_1:79153564-79153583 | None:intergenic | 25.0% |
| ! | AACTTTCTGAAGAGAATCAT+CGG | - | chr2_1:79152637-79152656 | None:intergenic | 30.0% |
| GTTATGTACATGAATTGTTG+GGG | + | chr2_1:79152654-79152673 | Msa0227890:intron | 30.0% | |
| GAATGAGAAATATTGGGAAA+AGG | + | chr2_1:79152753-79152772 | Msa0227890:intron | 30.0% | |
| ATATTGGGAAAAGGAAACAA+TGG | + | chr2_1:79152762-79152781 | Msa0227890:intron | 30.0% | |
| TATTGGGAAAAGGAAACAAT+GGG | + | chr2_1:79152763-79152782 | Msa0227890:intron | 30.0% | |
| TAAACGTATCAAATTGTCCA+AGG | - | chr2_1:79152793-79152812 | None:intergenic | 30.0% | |
| ATCTTCTTCGTTCAAATTGT+GGG | + | chr2_1:79152823-79152842 | Msa0227890:intron | 30.0% | |
| TTTGACTCAACCAATATTCA+AGG | - | chr2_1:79152881-79152900 | None:intergenic | 30.0% | |
| GTAATTAGTGACTGTTTGTT+AGG | + | chr2_1:79153096-79153115 | Msa0227890:intron | 30.0% | |
| ATTTAACACACATAAGCATC+GGG | - | chr2_1:79153563-79153582 | None:intergenic | 30.0% | |
| ! | AACTTTCTGAAGAGAATCAT+CGG | - | chr2_1:79152637-79152656 | None:intergenic | 30.0% |
| GTTATGTACATGAATTGTTG+GGG | + | chr2_1:79152654-79152673 | Msa0227890:intron | 30.0% | |
| GAATGAGAAATATTGGGAAA+AGG | + | chr2_1:79152753-79152772 | Msa0227890:intron | 30.0% | |
| ATATTGGGAAAAGGAAACAA+TGG | + | chr2_1:79152762-79152781 | Msa0227890:intron | 30.0% | |
| TATTGGGAAAAGGAAACAAT+GGG | + | chr2_1:79152763-79152782 | Msa0227890:intron | 30.0% | |
| TAAACGTATCAAATTGTCCA+AGG | - | chr2_1:79152793-79152812 | None:intergenic | 30.0% | |
| ATCTTCTTCGTTCAAATTGT+GGG | + | chr2_1:79152823-79152842 | Msa0227890:intron | 30.0% | |
| TTTGACTCAACCAATATTCA+AGG | - | chr2_1:79152881-79152900 | None:intergenic | 30.0% | |
| GTAATTAGTGACTGTTTGTT+AGG | + | chr2_1:79153096-79153115 | Msa0227890:intron | 30.0% | |
| ATTTAACACACATAAGCATC+GGG | - | chr2_1:79153563-79153582 | None:intergenic | 30.0% | |
| TGCACTTATGAATTGGATCA+GGG | - | chr2_1:79152470-79152489 | None:intergenic | 35.0% | |
| TTGCACTTATGAATTGGATC+AGG | - | chr2_1:79152471-79152490 | None:intergenic | 35.0% | |
| !! | GCTGATTTGCACTTATGAAT+TGG | - | chr2_1:79152477-79152496 | None:intergenic | 35.0% |
| GCATGCAGAAATGATTCTAA+GGG | + | chr2_1:79152700-79152719 | Msa0227890:intron | 35.0% | |
| GATCTTCTTCGTTCAAATTG+TGG | + | chr2_1:79152822-79152841 | Msa0227890:intron | 35.0% | |
| GCAACTTGAACAAATATTCC+TGG | - | chr2_1:79152851-79152870 | None:intergenic | 35.0% | |
| AAAGCAAAGAGAAGCAAAAG+AGG | + | chr2_1:79152924-79152943 | Msa0227890:intron | 35.0% | |
| AAGCAAAGAGAAGCAAAAGA+GGG | + | chr2_1:79152925-79152944 | Msa0227890:intron | 35.0% | |
| TTGATCAGCTCACTAATCAT+TGG | - | chr2_1:79153002-79153021 | None:intergenic | 35.0% | |
| ! | ATTAGTGACTGTTTGTTAGG+AGG | + | chr2_1:79153099-79153118 | Msa0227890:intron | 35.0% |
| CTCTCTCTCATATGTTCTAA+TGG | + | chr2_1:79153247-79153266 | Msa0227890:intron | 35.0% | |
| GTTCTAATGGTATGTTAGCT+CGG | + | chr2_1:79153260-79153279 | Msa0227890:intron | 35.0% | |
| CATTCTTCTCTCATGTTCAA+TGG | + | chr2_1:79153338-79153357 | Msa0227890:intron | 35.0% | |
| TAGATGACACAAACATGTGA+AGG | + | chr2_1:79153373-79153392 | Msa0227890:intron | 35.0% | |
| AAACATGTGAAGGTTCTTCT+TGG | + | chr2_1:79153383-79153402 | Msa0227890:intron | 35.0% | |
| ! | TTTAACACACATAAGCATCG+GGG | - | chr2_1:79153562-79153581 | None:intergenic | 35.0% |
| TGCACTTATGAATTGGATCA+GGG | - | chr2_1:79152470-79152489 | None:intergenic | 35.0% | |
| TTGCACTTATGAATTGGATC+AGG | - | chr2_1:79152471-79152490 | None:intergenic | 35.0% | |
| !! | GCTGATTTGCACTTATGAAT+TGG | - | chr2_1:79152477-79152496 | None:intergenic | 35.0% |
| GCATGCAGAAATGATTCTAA+GGG | + | chr2_1:79152700-79152719 | Msa0227890:intron | 35.0% | |
| GATCTTCTTCGTTCAAATTG+TGG | + | chr2_1:79152822-79152841 | Msa0227890:intron | 35.0% | |
| GCAACTTGAACAAATATTCC+TGG | - | chr2_1:79152851-79152870 | None:intergenic | 35.0% | |
| AAAGCAAAGAGAAGCAAAAG+AGG | + | chr2_1:79152924-79152943 | Msa0227890:intron | 35.0% | |
| AAGCAAAGAGAAGCAAAAGA+GGG | + | chr2_1:79152925-79152944 | Msa0227890:intron | 35.0% | |
| TTGATCAGCTCACTAATCAT+TGG | - | chr2_1:79153002-79153021 | None:intergenic | 35.0% | |
| ! | ATTAGTGACTGTTTGTTAGG+AGG | + | chr2_1:79153099-79153118 | Msa0227890:intron | 35.0% |
| CTCTCTCTCATATGTTCTAA+TGG | + | chr2_1:79153247-79153266 | Msa0227890:intron | 35.0% | |
| GTTCTAATGGTATGTTAGCT+CGG | + | chr2_1:79153260-79153279 | Msa0227890:intron | 35.0% | |
| CATTCTTCTCTCATGTTCAA+TGG | + | chr2_1:79153338-79153357 | Msa0227890:intron | 35.0% | |
| TAGATGACACAAACATGTGA+AGG | + | chr2_1:79153373-79153392 | Msa0227890:intron | 35.0% | |
| AAACATGTGAAGGTTCTTCT+TGG | + | chr2_1:79153383-79153402 | Msa0227890:intron | 35.0% | |
| ! | TTTAACACACATAAGCATCG+GGG | - | chr2_1:79153562-79153581 | None:intergenic | 35.0% |
| TGAGTTACTTGAACCGTGTT+TGG | + | chr2_1:79152412-79152431 | Msa0227890:CDS | 40.0% | |
| TTACTTGAACCGTGTTTGGA+TGG | + | chr2_1:79152416-79152435 | Msa0227890:CDS | 40.0% | |
| ACTTATGAATTGGATCAGGG+TGG | - | chr2_1:79152467-79152486 | None:intergenic | 40.0% | |
| CATAAGTGCAAATCAGCTCT+TGG | + | chr2_1:79152480-79152499 | Msa0227890:CDS | 40.0% | |
| TTTCTCCTCAGAACTCATGA+CGG | - | chr2_1:79152598-79152617 | None:intergenic | 40.0% | |
| TACATGAATTGTTGGGGTCA+AGG | + | chr2_1:79152660-79152679 | Msa0227890:intron | 40.0% | |
| GGCATGCAGAAATGATTCTA+AGG | + | chr2_1:79152699-79152718 | Msa0227890:intron | 40.0% | |
| AGGAAACAATGGGATTACCT+TGG | + | chr2_1:79152773-79152792 | Msa0227890:intron | 40.0% | |
| GTATCCAAGTCTCATCACAT+CGG | - | chr2_1:79153134-79153153 | None:intergenic | 40.0% | |
| ! | TCTTGGCTTTCATCATGCAT+TGG | + | chr2_1:79153400-79153419 | Msa0227890:intron | 40.0% |
| TGCAAAAAAGGTAGCGTACA+AGG | + | chr2_1:79153469-79153488 | Msa0227890:intron | 40.0% | |
| AAAAAAGGTAGCGTACAAGG+AGG | + | chr2_1:79153472-79153491 | Msa0227890:intron | 40.0% | |
| TGAGTTACTTGAACCGTGTT+TGG | + | chr2_1:79152412-79152431 | Msa0227890:CDS | 40.0% | |
| TTACTTGAACCGTGTTTGGA+TGG | + | chr2_1:79152416-79152435 | Msa0227890:CDS | 40.0% | |
| ACTTATGAATTGGATCAGGG+TGG | - | chr2_1:79152467-79152486 | None:intergenic | 40.0% | |
| CATAAGTGCAAATCAGCTCT+TGG | + | chr2_1:79152480-79152499 | Msa0227890:CDS | 40.0% | |
| TTTCTCCTCAGAACTCATGA+CGG | - | chr2_1:79152598-79152617 | None:intergenic | 40.0% | |
| TACATGAATTGTTGGGGTCA+AGG | + | chr2_1:79152660-79152679 | Msa0227890:intron | 40.0% | |
| GGCATGCAGAAATGATTCTA+AGG | + | chr2_1:79152699-79152718 | Msa0227890:intron | 40.0% | |
| AGGAAACAATGGGATTACCT+TGG | + | chr2_1:79152773-79152792 | Msa0227890:intron | 40.0% | |
| GTATCCAAGTCTCATCACAT+CGG | - | chr2_1:79153134-79153153 | None:intergenic | 40.0% | |
| ! | TCTTGGCTTTCATCATGCAT+TGG | + | chr2_1:79153400-79153419 | Msa0227890:intron | 40.0% |
| TGCAAAAAAGGTAGCGTACA+AGG | + | chr2_1:79153469-79153488 | Msa0227890:intron | 40.0% | |
| AAAAAAGGTAGCGTACAAGG+AGG | + | chr2_1:79153472-79153491 | Msa0227890:intron | 40.0% | |
| ! | AGAAGAGACGAGTTCGGTTT+TGG | - | chr2_1:79152515-79152534 | None:intergenic | 45.0% |
| ATTGTTGGGGTCAAGGCTAA+TGG | + | chr2_1:79152667-79152686 | Msa0227890:intron | 45.0% | |
| CAAGGCTAATGGTGACAACA+AGG | + | chr2_1:79152678-79152697 | Msa0227890:intron | 45.0% | |
| TCGTTCAAATTGTGGGATCC+AGG | + | chr2_1:79152830-79152849 | Msa0227890:intron | 45.0% | |
| TGGCTTTCATCATGCATTGG+AGG | + | chr2_1:79153403-79153422 | Msa0227890:intron | 45.0% | |
| GCATTGGAGGCTGTAAACTT+TGG | + | chr2_1:79153416-79153435 | Msa0227890:intron | 45.0% | |
| ! | AGAAGAGACGAGTTCGGTTT+TGG | - | chr2_1:79152515-79152534 | None:intergenic | 45.0% |
| ATTGTTGGGGTCAAGGCTAA+TGG | + | chr2_1:79152667-79152686 | Msa0227890:intron | 45.0% | |
| CAAGGCTAATGGTGACAACA+AGG | + | chr2_1:79152678-79152697 | Msa0227890:intron | 45.0% | |
| TCGTTCAAATTGTGGGATCC+AGG | + | chr2_1:79152830-79152849 | Msa0227890:intron | 45.0% | |
| TGGCTTTCATCATGCATTGG+AGG | + | chr2_1:79153403-79153422 | Msa0227890:intron | 45.0% | |
| GCATTGGAGGCTGTAAACTT+TGG | + | chr2_1:79153416-79153435 | Msa0227890:intron | 45.0% | |
| CAGTTGCTGCCATCCAAACA+CGG | - | chr2_1:79152428-79152447 | None:intergenic | 50.0% | |
| TGTTTGGATGGCAGCAACTG+TGG | + | chr2_1:79152428-79152447 | Msa0227890:CDS | 50.0% | |
| ! | GAATGCTGACAAAGCACCAC+CGG | - | chr2_1:79152541-79152560 | None:intergenic | 50.0% |
| GATACAACGACGCTGGACAA+CGG | - | chr2_1:79152567-79152586 | None:intergenic | 50.0% | |
| GTTGTCCAGCGTCGTTGTAT+CGG | + | chr2_1:79152566-79152585 | Msa0227890:CDS | 50.0% | |
| AGCAACCGTCATGAGTTCTG+AGG | + | chr2_1:79152590-79152609 | Msa0227890:CDS | 50.0% | |
| GCAACCGATGTGATGAGACT+TGG | + | chr2_1:79153127-79153146 | Msa0227890:intron | 50.0% | |
| GGAGGCTGTAAACTTTGGTG+TGG | + | chr2_1:79153421-79153440 | Msa0227890:intron | 50.0% | |
| ! | GGCTGTAAACTTTGGTGTGG+AGG | + | chr2_1:79153424-79153443 | Msa0227890:intron | 50.0% |
| ! | AAACTTTGGTGTGGAGGAGC+TGG | + | chr2_1:79153430-79153449 | Msa0227890:intron | 50.0% |
| !! | ATAAGCATCGGGGATCACAG+TGG | - | chr2_1:79153552-79153571 | None:intergenic | 50.0% |
| CAGTTGCTGCCATCCAAACA+CGG | - | chr2_1:79152428-79152447 | None:intergenic | 50.0% | |
| TGTTTGGATGGCAGCAACTG+TGG | + | chr2_1:79152428-79152447 | Msa0227890:CDS | 50.0% | |
| ! | GAATGCTGACAAAGCACCAC+CGG | - | chr2_1:79152541-79152560 | None:intergenic | 50.0% |
| GATACAACGACGCTGGACAA+CGG | - | chr2_1:79152567-79152586 | None:intergenic | 50.0% | |
| GTTGTCCAGCGTCGTTGTAT+CGG | + | chr2_1:79152566-79152585 | Msa0227890:CDS | 50.0% | |
| AGCAACCGTCATGAGTTCTG+AGG | + | chr2_1:79152590-79152609 | Msa0227890:CDS | 50.0% | |
| GCAACCGATGTGATGAGACT+TGG | + | chr2_1:79153127-79153146 | Msa0227890:intron | 50.0% | |
| GGAGGCTGTAAACTTTGGTG+TGG | + | chr2_1:79153421-79153440 | Msa0227890:intron | 50.0% | |
| ! | GGCTGTAAACTTTGGTGTGG+AGG | + | chr2_1:79153424-79153443 | Msa0227890:intron | 50.0% |
| ! | AAACTTTGGTGTGGAGGAGC+TGG | + | chr2_1:79153430-79153449 | Msa0227890:intron | 50.0% |
| !! | ATAAGCATCGGGGATCACAG+TGG | - | chr2_1:79153552-79153571 | None:intergenic | 50.0% |
| TGCTTCCGATACAACGACGC+TGG | - | chr2_1:79152574-79152593 | None:intergenic | 55.0% | |
| TGCTTCCGATACAACGACGC+TGG | - | chr2_1:79152574-79152593 | None:intergenic | 55.0% | |
| GATGGCAGCAACTGTGGCTG+TGG | + | chr2_1:79152434-79152453 | Msa0227890:CDS | 60.0% | |
| GCAACTGTGGCTGTGGCACA+AGG | + | chr2_1:79152441-79152460 | Msa0227890:CDS | 60.0% | |
| CGGCGGAGAAGAGACGAGTT+CGG | - | chr2_1:79152521-79152540 | None:intergenic | 60.0% | |
| CGAACTCGTCTCTTCTCCGC+CGG | + | chr2_1:79152519-79152538 | Msa0227890:CDS | 60.0% | |
| ! | TGCTGACAAAGCACCACCGG+CGG | - | chr2_1:79152538-79152557 | None:intergenic | 60.0% |
| GCATCGGGGATCACAGTGGA+TGG | - | chr2_1:79153548-79153567 | None:intergenic | 60.0% | |
| GATGGCAGCAACTGTGGCTG+TGG | + | chr2_1:79152434-79152453 | Msa0227890:CDS | 60.0% | |
| GCAACTGTGGCTGTGGCACA+AGG | + | chr2_1:79152441-79152460 | Msa0227890:CDS | 60.0% | |
| CGGCGGAGAAGAGACGAGTT+CGG | - | chr2_1:79152521-79152540 | None:intergenic | 60.0% | |
| CGAACTCGTCTCTTCTCCGC+CGG | + | chr2_1:79152519-79152538 | Msa0227890:CDS | 60.0% | |
| ! | TGCTGACAAAGCACCACCGG+CGG | - | chr2_1:79152538-79152557 | None:intergenic | 60.0% |
| GCATCGGGGATCACAGTGGA+TGG | - | chr2_1:79153548-79153567 | None:intergenic | 60.0% | |
| ACTCGTCTCTTCTCCGCCGG+TGG | + | chr2_1:79152522-79152541 | Msa0227890:CDS | 65.0% | |
| ! | GCTCGGTTCGATCGCGACGA+AGG | + | chr2_1:79153277-79153296 | Msa0227890:intron | 65.0% |
| ACTCGTCTCTTCTCCGCCGG+TGG | + | chr2_1:79152522-79152541 | Msa0227890:CDS | 65.0% | |
| ! | GCTCGGTTCGATCGCGACGA+AGG | + | chr2_1:79153277-79153296 | Msa0227890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79152411 | 79153622 | 79152411 | ID=Msa0227890;Name=Msa0227890 |
| chr2_1 | mRNA | 79152411 | 79153622 | 79152411 | ID=Msa0227890-mRNA-1;Parent=Msa0227890;Name=Msa0227890-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.5|0|0|2|0|72 |
| chr2_1 | exon | 79152411 | 79152622 | 79152411 | ID=Msa0227890-mRNA-1:exon:24103;Parent=Msa0227890-mRNA-1 |
| chr2_1 | exon | 79153616 | 79153622 | 79153616 | ID=Msa0227890-mRNA-1:exon:24104;Parent=Msa0227890-mRNA-1 |
| chr2_1 | CDS | 79152411 | 79152622 | 79152411 | ID=Msa0227890-mRNA-1:cds;Parent=Msa0227890-mRNA-1 |
| chr2_1 | CDS | 79153616 | 79153622 | 79153616 | ID=Msa0227890-mRNA-1:cds;Parent=Msa0227890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
