Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261540 | AFK36047.1 | 73.171 | 82 | 22 | 0 | 1 | 82 | 1 | 82 | 2.87e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261540 | I3S705 | 73.171 | 82 | 22 | 0 | 1 | 82 | 1 | 82 | 1.37e-35 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220240 | Msa0261540 | 0.801091 | 1.060437e-48 | -8.615850e-47 |
| Msa0227890 | Msa0261540 | 0.886477 | 3.306992e-72 | -8.615850e-47 |
| Msa0261540 | Msa0305020 | 0.888278 | 6.801546e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261540 | MtrunA17_Chr2g0323741 | 73.171 | 82 | 22 | 0 | 1 | 82 | 1 | 82 | 2.64e-39 | 127 |
| Msa0261540 | MtrunA17_Chr2g0323751 | 89.062 | 64 | 7 | 0 | 1 | 64 | 1 | 64 | 1.82e-37 | 122 |
| Msa0261540 | MtrunA17_Chr2g0323761 | 79.032 | 62 | 12 | 1 | 1 | 62 | 1 | 61 | 5.94e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAGACGAGTTCGGTTT+TGG | 0.261084 | 2_2:-60000305 | None:intergenic |
| TCTTGGCTTTCAAGATGCTT+TGG | 0.317798 | 2_2:+60001145 | Msa0261540:CDS |
| GCTGATTTGCACTTATGAAT+TGG | 0.319739 | 2_2:-60000267 | None:intergenic |
| AAACATGTGAAGGTTCTTCT+TGG | 0.327112 | 2_2:+60001128 | Msa0261540:intron |
| TGAGTTACTTAAACCGTGTT+TGG | 0.337550 | 2_2:+60000205 | Msa0261540:CDS |
| TGGCTTTCAAGATGCTTTGG+AGG | 0.382195 | 2_2:+60001148 | Msa0261540:CDS |
| CATAAGTGCAAATCAGCTCT+TGG | 0.437934 | 2_2:+60000273 | Msa0261540:CDS |
| ATTTAACACACATAAGCATC+GGG | 0.454435 | 2_2:-60001305 | None:intergenic |
| AAACTTTGGTGTGGAGGAGC+TGG | 0.481261 | 2_2:+60001175 | Msa0261540:CDS |
| GTTGTCCAGCGTCGTTGTAT+CGG | 0.511337 | 2_2:+60000359 | Msa0261540:CDS |
| GCTTTGGAGGCTGTAAACTT+TGG | 0.531232 | 2_2:+60001161 | Msa0261540:CDS |
| GAATGCTGACAAAGCACCAC+CGG | 0.532950 | 2_2:-60000331 | None:intergenic |
| CGGCGGAGAAGAGACGAGTT+CGG | 0.533512 | 2_2:-60000311 | None:intergenic |
| GATGGCAGCAACCGTGGCTG+TGG | 0.536890 | 2_2:+60000227 | Msa0261540:CDS |
| AATTTAACACACATAAGCAT+CGG | 0.554725 | 2_2:-60001306 | None:intergenic |
| GCAACCGTGGCTGTGGCACA+AGG | 0.556834 | 2_2:+60000234 | Msa0261540:CDS |
| ACTCGTCTCTTCTCCGCCGG+TGG | 0.562949 | 2_2:+60000315 | Msa0261540:CDS |
| GGCTGTAAACTTTGGTGTGG+AGG | 0.576400 | 2_2:+60001169 | Msa0261540:CDS |
| TTACTTAAACCGTGTTTGGA+TGG | 0.578366 | 2_2:+60000209 | Msa0261540:CDS |
| CGGTTGCTGCCATCCAAACA+CGG | 0.578962 | 2_2:-60000218 | None:intergenic |
| GGAGGCTGTAAACTTTGGTG+TGG | 0.579675 | 2_2:+60001166 | Msa0261540:CDS |
| GTGGCCTTGTGCCACAGCCA+CGG | 0.579913 | 2_2:-60000238 | None:intergenic |
| GCATCGGGGATCACAGTGGA+TGG | 0.583632 | 2_2:-60001290 | None:intergenic |
| TGCTTCCGATACAACGACGC+TGG | 0.592056 | 2_2:-60000364 | None:intergenic |
| CGAACTCGTCTCTTCTCCGC+CGG | 0.592246 | 2_2:+60000312 | Msa0261540:CDS |
| GATACAACGACGCTGGACAA+CGG | 0.631291 | 2_2:-60000357 | None:intergenic |
| TGTTTGGATGGCAGCAACCG+TGG | 0.633356 | 2_2:+60000221 | Msa0261540:CDS |
| TGCTGACAAAGCACCACCGG+CGG | 0.666936 | 2_2:-60000328 | None:intergenic |
| ATAAGCATCGGGGATCACAG+TGG | 0.740522 | 2_2:-60001294 | None:intergenic |
| ACTTATGAATTGGATCAGTG+TGG | 0.757374 | 2_2:-60000257 | None:intergenic |
| TTTAACACACATAAGCATCG+GGG | 0.759828 | 2_2:-60001304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAAGAAAACAACATATA+GGG | - | chr2_2:60000530-60000549 | None:intergenic | 20.0% |
| !!! | TTTTCTTGAATGAGAAATAT+TGG | + | chr2_2:60000539-60000558 | Msa0261540:intron | 20.0% |
| !! | TTTCTTGAATGAGAAATATT+GGG | + | chr2_2:60000540-60000559 | Msa0261540:intron | 20.0% |
| !!! | TTGATGAGTATTTTTTCATT+TGG | + | chr2_2:60000817-60000836 | Msa0261540:intron | 20.0% |
| !! | TGCTAAAAGTTAGTTAATTT+AGG | + | chr2_2:60000843-60000862 | Msa0261540:intron | 20.0% |
| !! | AAATCAAACATATGCAAAAA+AGG | + | chr2_2:60001202-60001221 | Msa0261540:CDS | 20.0% |
| !! | ATTCAAGAAAACAACATATA+GGG | - | chr2_2:60000530-60000549 | None:intergenic | 20.0% |
| !!! | TTTTCTTGAATGAGAAATAT+TGG | + | chr2_2:60000539-60000558 | Msa0261540:intron | 20.0% |
| !! | TTTCTTGAATGAGAAATATT+GGG | + | chr2_2:60000540-60000559 | Msa0261540:intron | 20.0% |
| !!! | TTGATGAGTATTTTTTCATT+TGG | + | chr2_2:60000817-60000836 | Msa0261540:intron | 20.0% |
| !! | TGCTAAAAGTTAGTTAATTT+AGG | + | chr2_2:60000843-60000862 | Msa0261540:intron | 20.0% |
| !! | AAATCAAACATATGCAAAAA+AGG | + | chr2_2:60001202-60001221 | Msa0261540:CDS | 20.0% |
| ! | AAGTTATGTACATGAATTGT+TGG | + | chr2_2:60000445-60000464 | Msa0261540:intron | 25.0% |
| ! | AGTTATGTACATGAATTGTT+GGG | + | chr2_2:60000446-60000465 | Msa0261540:intron | 25.0% |
| ! | CATTCAAGAAAACAACATAT+AGG | - | chr2_2:60000531-60000550 | None:intergenic | 25.0% |
| ! | TGCAAAATTTCCTTGAATAT+TGG | + | chr2_2:60000661-60000680 | Msa0261540:intron | 25.0% |
| ! | TATACAAGTGAATGAAATCA+AGG | + | chr2_2:60000694-60000713 | Msa0261540:intron | 25.0% |
| ! | TCTAAGGAATATTTCATGAT+AGG | - | chr2_2:60000751-60000770 | None:intergenic | 25.0% |
| ! | GTAGACTTATTTATAGTCTA+AGG | - | chr2_2:60000767-60000786 | None:intergenic | 25.0% |
| ! | GTCAAGAAAATTGTTCAAAA+CGG | - | chr2_2:60001063-60001082 | None:intergenic | 25.0% |
| ! | GTTGAAGAAAAAGTAATACA+AGG | + | chr2_2:60001239-60001258 | Msa0261540:CDS | 25.0% |
| ! | AAGTTATGTACATGAATTGT+TGG | + | chr2_2:60000445-60000464 | Msa0261540:intron | 25.0% |
| ! | AGTTATGTACATGAATTGTT+GGG | + | chr2_2:60000446-60000465 | Msa0261540:intron | 25.0% |
| ! | CATTCAAGAAAACAACATAT+AGG | - | chr2_2:60000531-60000550 | None:intergenic | 25.0% |
| ! | TGCAAAATTTCCTTGAATAT+TGG | + | chr2_2:60000661-60000680 | Msa0261540:intron | 25.0% |
| ! | TATACAAGTGAATGAAATCA+AGG | + | chr2_2:60000694-60000713 | Msa0261540:intron | 25.0% |
| ! | TCTAAGGAATATTTCATGAT+AGG | - | chr2_2:60000751-60000770 | None:intergenic | 25.0% |
| ! | GTAGACTTATTTATAGTCTA+AGG | - | chr2_2:60000767-60000786 | None:intergenic | 25.0% |
| ! | GTCAAGAAAATTGTTCAAAA+CGG | - | chr2_2:60001063-60001082 | None:intergenic | 25.0% |
| ! | GTTGAAGAAAAAGTAATACA+AGG | + | chr2_2:60001239-60001258 | Msa0261540:CDS | 25.0% |
| ! | AACTTTCTGAAGAGAATCAT+CGG | - | chr2_2:60000430-60000449 | None:intergenic | 30.0% |
| GTTATGTACATGAATTGTTG+GGG | + | chr2_2:60000447-60000466 | Msa0261540:intron | 30.0% | |
| GAATGAGAAATATTGGGAAA+AGG | + | chr2_2:60000546-60000565 | Msa0261540:intron | 30.0% | |
| ATATTGGGAAAAGGAAACAA+TGG | + | chr2_2:60000555-60000574 | Msa0261540:intron | 30.0% | |
| TATTGGGAAAAGGAAACAAT+GGG | + | chr2_2:60000556-60000575 | Msa0261540:intron | 30.0% | |
| TAAACGTATCAAATTGTCCA+AGG | - | chr2_2:60000586-60000605 | None:intergenic | 30.0% | |
| ATCTTCTTCGTTCAAATTGT+GGG | + | chr2_2:60000616-60000635 | Msa0261540:intron | 30.0% | |
| TTTGACTCAACCAATATTCA+AGG | - | chr2_2:60000674-60000693 | None:intergenic | 30.0% | |
| GTAATTAGTGACTGTTTGTT+AGG | + | chr2_2:60000889-60000908 | Msa0261540:intron | 30.0% | |
| ATTCTTTCTCTCATGTTCAA+TGG | + | chr2_2:60001083-60001102 | Msa0261540:intron | 30.0% | |
| ! | AACTTTCTGAAGAGAATCAT+CGG | - | chr2_2:60000430-60000449 | None:intergenic | 30.0% |
| GTTATGTACATGAATTGTTG+GGG | + | chr2_2:60000447-60000466 | Msa0261540:intron | 30.0% | |
| GAATGAGAAATATTGGGAAA+AGG | + | chr2_2:60000546-60000565 | Msa0261540:intron | 30.0% | |
| ATATTGGGAAAAGGAAACAA+TGG | + | chr2_2:60000555-60000574 | Msa0261540:intron | 30.0% | |
| TATTGGGAAAAGGAAACAAT+GGG | + | chr2_2:60000556-60000575 | Msa0261540:intron | 30.0% | |
| TAAACGTATCAAATTGTCCA+AGG | - | chr2_2:60000586-60000605 | None:intergenic | 30.0% | |
| ATCTTCTTCGTTCAAATTGT+GGG | + | chr2_2:60000616-60000635 | Msa0261540:intron | 30.0% | |
| TTTGACTCAACCAATATTCA+AGG | - | chr2_2:60000674-60000693 | None:intergenic | 30.0% | |
| GTAATTAGTGACTGTTTGTT+AGG | + | chr2_2:60000889-60000908 | Msa0261540:intron | 30.0% | |
| ATTCTTTCTCTCATGTTCAA+TGG | + | chr2_2:60001083-60001102 | Msa0261540:intron | 30.0% | |
| TGAGTTACTTAAACCGTGTT+TGG | + | chr2_2:60000205-60000224 | Msa0261540:CDS | 35.0% | |
| TTACTTAAACCGTGTTTGGA+TGG | + | chr2_2:60000209-60000228 | Msa0261540:CDS | 35.0% | |
| ACTTATGAATTGGATCAGTG+TGG | - | chr2_2:60000260-60000279 | None:intergenic | 35.0% | |
| !! | GCTGATTTGCACTTATGAAT+TGG | - | chr2_2:60000270-60000289 | None:intergenic | 35.0% |
| GCATGCAGAAATGATTCTAA+GGG | + | chr2_2:60000493-60000512 | Msa0261540:intron | 35.0% | |
| GATCTTCTTCGTTCAAATTG+TGG | + | chr2_2:60000615-60000634 | Msa0261540:intron | 35.0% | |
| GCAACTTGAACAAATATTCC+TGG | - | chr2_2:60000644-60000663 | None:intergenic | 35.0% | |
| AAAGCAAAGAGAAGCAAAAG+AGG | + | chr2_2:60000717-60000736 | Msa0261540:intron | 35.0% | |
| AAGCAAAGAGAAGCAAAAGA+GGG | + | chr2_2:60000718-60000737 | Msa0261540:intron | 35.0% | |
| TTGATCAGCTCACTAATCAT+TGG | - | chr2_2:60000795-60000814 | None:intergenic | 35.0% | |
| ! | ATTAGTGACTGTTTGTTAGG+AGG | + | chr2_2:60000892-60000911 | Msa0261540:intron | 35.0% |
| CGAATACAACACATATGTAG+AGG | - | chr2_2:60000927-60000946 | None:intergenic | 35.0% | |
| CTCTCTCTCATATGTTCTAA+TGG | + | chr2_2:60000991-60001010 | Msa0261540:intron | 35.0% | |
| GTTCTAATGGTATGTTAGCT+CGG | + | chr2_2:60001004-60001023 | Msa0261540:intron | 35.0% | |
| TAGATGACACAAACATGTGA+AGG | + | chr2_2:60001118-60001137 | Msa0261540:intron | 35.0% | |
| AAACATGTGAAGGTTCTTCT+TGG | + | chr2_2:60001128-60001147 | Msa0261540:intron | 35.0% | |
| TGAGTTACTTAAACCGTGTT+TGG | + | chr2_2:60000205-60000224 | Msa0261540:CDS | 35.0% | |
| TTACTTAAACCGTGTTTGGA+TGG | + | chr2_2:60000209-60000228 | Msa0261540:CDS | 35.0% | |
| ACTTATGAATTGGATCAGTG+TGG | - | chr2_2:60000260-60000279 | None:intergenic | 35.0% | |
| !! | GCTGATTTGCACTTATGAAT+TGG | - | chr2_2:60000270-60000289 | None:intergenic | 35.0% |
| GCATGCAGAAATGATTCTAA+GGG | + | chr2_2:60000493-60000512 | Msa0261540:intron | 35.0% | |
| GATCTTCTTCGTTCAAATTG+TGG | + | chr2_2:60000615-60000634 | Msa0261540:intron | 35.0% | |
| GCAACTTGAACAAATATTCC+TGG | - | chr2_2:60000644-60000663 | None:intergenic | 35.0% | |
| AAAGCAAAGAGAAGCAAAAG+AGG | + | chr2_2:60000717-60000736 | Msa0261540:intron | 35.0% | |
| AAGCAAAGAGAAGCAAAAGA+GGG | + | chr2_2:60000718-60000737 | Msa0261540:intron | 35.0% | |
| TTGATCAGCTCACTAATCAT+TGG | - | chr2_2:60000795-60000814 | None:intergenic | 35.0% | |
| ! | ATTAGTGACTGTTTGTTAGG+AGG | + | chr2_2:60000892-60000911 | Msa0261540:intron | 35.0% |
| CGAATACAACACATATGTAG+AGG | - | chr2_2:60000927-60000946 | None:intergenic | 35.0% | |
| CTCTCTCTCATATGTTCTAA+TGG | + | chr2_2:60000991-60001010 | Msa0261540:intron | 35.0% | |
| GTTCTAATGGTATGTTAGCT+CGG | + | chr2_2:60001004-60001023 | Msa0261540:intron | 35.0% | |
| TAGATGACACAAACATGTGA+AGG | + | chr2_2:60001118-60001137 | Msa0261540:intron | 35.0% | |
| AAACATGTGAAGGTTCTTCT+TGG | + | chr2_2:60001128-60001147 | Msa0261540:intron | 35.0% | |
| CATAAGTGCAAATCAGCTCT+TGG | + | chr2_2:60000273-60000292 | Msa0261540:CDS | 40.0% | |
| TTTCTCCTCAGAACTCATGA+CGG | - | chr2_2:60000391-60000410 | None:intergenic | 40.0% | |
| TACATGAATTGTTGGGGTCA+AGG | + | chr2_2:60000453-60000472 | Msa0261540:intron | 40.0% | |
| GGCATGCAGAAATGATTCTA+AGG | + | chr2_2:60000492-60000511 | Msa0261540:intron | 40.0% | |
| AGGAAACAATGGGATTACCT+TGG | + | chr2_2:60000566-60000585 | Msa0261540:intron | 40.0% | |
| ! | TCTTGGCTTTCAAGATGCTT+TGG | + | chr2_2:60001145-60001164 | Msa0261540:CDS | 40.0% |
| TGCAAAAAAGGTAGCGTACA+AGG | + | chr2_2:60001214-60001233 | Msa0261540:CDS | 40.0% | |
| AAAAAAGGTAGCGTACAAGG+AGG | + | chr2_2:60001217-60001236 | Msa0261540:CDS | 40.0% | |
| CATAAGTGCAAATCAGCTCT+TGG | + | chr2_2:60000273-60000292 | Msa0261540:CDS | 40.0% | |
| TTTCTCCTCAGAACTCATGA+CGG | - | chr2_2:60000391-60000410 | None:intergenic | 40.0% | |
| TACATGAATTGTTGGGGTCA+AGG | + | chr2_2:60000453-60000472 | Msa0261540:intron | 40.0% | |
| GGCATGCAGAAATGATTCTA+AGG | + | chr2_2:60000492-60000511 | Msa0261540:intron | 40.0% | |
| AGGAAACAATGGGATTACCT+TGG | + | chr2_2:60000566-60000585 | Msa0261540:intron | 40.0% | |
| ! | TCTTGGCTTTCAAGATGCTT+TGG | + | chr2_2:60001145-60001164 | Msa0261540:CDS | 40.0% |
| TGCAAAAAAGGTAGCGTACA+AGG | + | chr2_2:60001214-60001233 | Msa0261540:CDS | 40.0% | |
| AAAAAAGGTAGCGTACAAGG+AGG | + | chr2_2:60001217-60001236 | Msa0261540:CDS | 40.0% | |
| ! | AGAAGAGACGAGTTCGGTTT+TGG | - | chr2_2:60000308-60000327 | None:intergenic | 45.0% |
| ATTGTTGGGGTCAAGGCTAA+TGG | + | chr2_2:60000460-60000479 | Msa0261540:intron | 45.0% | |
| CAAGGCTAATGGTGACAACA+AGG | + | chr2_2:60000471-60000490 | Msa0261540:intron | 45.0% | |
| TCGTTCAAATTGTGGGATCC+AGG | + | chr2_2:60000623-60000642 | Msa0261540:intron | 45.0% | |
| TGGCTTTCAAGATGCTTTGG+AGG | + | chr2_2:60001148-60001167 | Msa0261540:CDS | 45.0% | |
| !! | GCTTTGGAGGCTGTAAACTT+TGG | + | chr2_2:60001161-60001180 | Msa0261540:CDS | 45.0% |
| ! | AGAAGAGACGAGTTCGGTTT+TGG | - | chr2_2:60000308-60000327 | None:intergenic | 45.0% |
| ATTGTTGGGGTCAAGGCTAA+TGG | + | chr2_2:60000460-60000479 | Msa0261540:intron | 45.0% | |
| CAAGGCTAATGGTGACAACA+AGG | + | chr2_2:60000471-60000490 | Msa0261540:intron | 45.0% | |
| TCGTTCAAATTGTGGGATCC+AGG | + | chr2_2:60000623-60000642 | Msa0261540:intron | 45.0% | |
| TGGCTTTCAAGATGCTTTGG+AGG | + | chr2_2:60001148-60001167 | Msa0261540:CDS | 45.0% | |
| !! | GCTTTGGAGGCTGTAAACTT+TGG | + | chr2_2:60001161-60001180 | Msa0261540:CDS | 45.0% |
| ! | GAATGCTGACAAAGCACCAC+CGG | - | chr2_2:60000334-60000353 | None:intergenic | 50.0% |
| GATACAACGACGCTGGACAA+CGG | - | chr2_2:60000360-60000379 | None:intergenic | 50.0% | |
| GTTGTCCAGCGTCGTTGTAT+CGG | + | chr2_2:60000359-60000378 | Msa0261540:CDS | 50.0% | |
| AGCAACCGTCATGAGTTCTG+AGG | + | chr2_2:60000383-60000402 | Msa0261540:intron | 50.0% | |
| GGAGGCTGTAAACTTTGGTG+TGG | + | chr2_2:60001166-60001185 | Msa0261540:CDS | 50.0% | |
| ! | GGCTGTAAACTTTGGTGTGG+AGG | + | chr2_2:60001169-60001188 | Msa0261540:CDS | 50.0% |
| ! | AAACTTTGGTGTGGAGGAGC+TGG | + | chr2_2:60001175-60001194 | Msa0261540:CDS | 50.0% |
| !! | ATAAGCATCGGGGATCACAG+TGG | - | chr2_2:60001297-60001316 | None:intergenic | 50.0% |
| ! | GAATGCTGACAAAGCACCAC+CGG | - | chr2_2:60000334-60000353 | None:intergenic | 50.0% |
| GATACAACGACGCTGGACAA+CGG | - | chr2_2:60000360-60000379 | None:intergenic | 50.0% | |
| GTTGTCCAGCGTCGTTGTAT+CGG | + | chr2_2:60000359-60000378 | Msa0261540:CDS | 50.0% | |
| AGCAACCGTCATGAGTTCTG+AGG | + | chr2_2:60000383-60000402 | Msa0261540:intron | 50.0% | |
| GGAGGCTGTAAACTTTGGTG+TGG | + | chr2_2:60001166-60001185 | Msa0261540:CDS | 50.0% | |
| ! | GGCTGTAAACTTTGGTGTGG+AGG | + | chr2_2:60001169-60001188 | Msa0261540:CDS | 50.0% |
| ! | AAACTTTGGTGTGGAGGAGC+TGG | + | chr2_2:60001175-60001194 | Msa0261540:CDS | 50.0% |
| !! | ATAAGCATCGGGGATCACAG+TGG | - | chr2_2:60001297-60001316 | None:intergenic | 50.0% |
| CGGTTGCTGCCATCCAAACA+CGG | - | chr2_2:60000221-60000240 | None:intergenic | 55.0% | |
| TGTTTGGATGGCAGCAACCG+TGG | + | chr2_2:60000221-60000240 | Msa0261540:CDS | 55.0% | |
| TGCTTCCGATACAACGACGC+TGG | - | chr2_2:60000367-60000386 | None:intergenic | 55.0% | |
| CGGTTGCTGCCATCCAAACA+CGG | - | chr2_2:60000221-60000240 | None:intergenic | 55.0% | |
| TGTTTGGATGGCAGCAACCG+TGG | + | chr2_2:60000221-60000240 | Msa0261540:CDS | 55.0% | |
| TGCTTCCGATACAACGACGC+TGG | - | chr2_2:60000367-60000386 | None:intergenic | 55.0% | |
| CGGCGGAGAAGAGACGAGTT+CGG | - | chr2_2:60000314-60000333 | None:intergenic | 60.0% | |
| CGAACTCGTCTCTTCTCCGC+CGG | + | chr2_2:60000312-60000331 | Msa0261540:CDS | 60.0% | |
| ! | TGCTGACAAAGCACCACCGG+CGG | - | chr2_2:60000331-60000350 | None:intergenic | 60.0% |
| GCATCGGGGATCACAGTGGA+TGG | - | chr2_2:60001293-60001312 | None:intergenic | 60.0% | |
| CGGCGGAGAAGAGACGAGTT+CGG | - | chr2_2:60000314-60000333 | None:intergenic | 60.0% | |
| CGAACTCGTCTCTTCTCCGC+CGG | + | chr2_2:60000312-60000331 | Msa0261540:CDS | 60.0% | |
| ! | TGCTGACAAAGCACCACCGG+CGG | - | chr2_2:60000331-60000350 | None:intergenic | 60.0% |
| GCATCGGGGATCACAGTGGA+TGG | - | chr2_2:60001293-60001312 | None:intergenic | 60.0% | |
| GATGGCAGCAACCGTGGCTG+TGG | + | chr2_2:60000227-60000246 | Msa0261540:CDS | 65.0% | |
| GCAACCGTGGCTGTGGCACA+AGG | + | chr2_2:60000234-60000253 | Msa0261540:CDS | 65.0% | |
| !! | GTGGCCTTGTGCCACAGCCA+CGG | - | chr2_2:60000241-60000260 | None:intergenic | 65.0% |
| ACTCGTCTCTTCTCCGCCGG+TGG | + | chr2_2:60000315-60000334 | Msa0261540:CDS | 65.0% | |
| ! | GCTCGGTTCGATCGCGACGA+AGG | + | chr2_2:60001021-60001040 | Msa0261540:intron | 65.0% |
| GATGGCAGCAACCGTGGCTG+TGG | + | chr2_2:60000227-60000246 | Msa0261540:CDS | 65.0% | |
| GCAACCGTGGCTGTGGCACA+AGG | + | chr2_2:60000234-60000253 | Msa0261540:CDS | 65.0% | |
| !! | GTGGCCTTGTGCCACAGCCA+CGG | - | chr2_2:60000241-60000260 | None:intergenic | 65.0% |
| ACTCGTCTCTTCTCCGCCGG+TGG | + | chr2_2:60000315-60000334 | Msa0261540:CDS | 65.0% | |
| ! | GCTCGGTTCGATCGCGACGA+AGG | + | chr2_2:60001021-60001040 | Msa0261540:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60000204 | 60001325 | 60000204 | ID=Msa0261540;Name=Msa0261540 |
| chr2_2 | mRNA | 60000204 | 60001325 | 60000204 | ID=Msa0261540-mRNA-1;Parent=Msa0261540;Name=Msa0261540-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0|0.5|2|0|123 |
| chr2_2 | exon | 60000204 | 60000389 | 60000204 | ID=Msa0261540-mRNA-1:exon:18475;Parent=Msa0261540-mRNA-1 |
| chr2_2 | exon | 60001140 | 60001325 | 60001140 | ID=Msa0261540-mRNA-1:exon:18476;Parent=Msa0261540-mRNA-1 |
| chr2_2 | CDS | 60000204 | 60000389 | 60000204 | ID=Msa0261540-mRNA-1:cds;Parent=Msa0261540-mRNA-1 |
| chr2_2 | CDS | 60001140 | 60001325 | 60001140 | ID=Msa0261540-mRNA-1:cds;Parent=Msa0261540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
