Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227930 | XP_024633339.2 | 89.130 | 414 | 26 | 2 | 1 | 410 | 51 | 449 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227930 | sp|Q9ZWA6|IDD3_ARATH | 48.081 | 443 | 166 | 14 | 1 | 394 | 65 | 492 | 2.65e-110 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227930 | A0A072VBM1 | 88.889 | 414 | 27 | 2 | 1 | 410 | 31 | 429 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0227930 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220850 | Msa0227930 | 0.988889 | 7.993171e-176 | -8.615850e-47 |
| Msa0220940 | Msa0227930 | 0.951409 | 2.171267e-109 | -8.615850e-47 |
| Msa0227930 | Msa0262390 | 0.904678 | 9.549944e-80 | -8.615850e-47 |
| Msa0227930 | Msa0300160 | 0.965747 | 5.242608e-125 | -8.615850e-47 |
| Msa0227930 | Msa0337520 | 0.983942 | 3.851850e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227930 | MtrunA17_Chr4g0040571 | 62.989 | 435 | 109 | 20 | 1 | 394 | 63 | 486 | 4.11e-160 | 460 |
| Msa0227930 | MtrunA17_Chr2g0324981 | 86.260 | 262 | 21 | 1 | 149 | 410 | 1 | 247 | 7.15e-150 | 424 |
| Msa0227930 | MtrunA17_Chr1g0181381 | 42.826 | 460 | 176 | 15 | 1 | 407 | 62 | 487 | 1.42e-93 | 290 |
| Msa0227930 | MtrunA17_Chr4g0029521 | 47.546 | 326 | 122 | 6 | 1 | 317 | 62 | 347 | 3.04e-93 | 289 |
| Msa0227930 | MtrunA17_Chr7g0268961 | 49.383 | 324 | 110 | 7 | 1 | 319 | 46 | 320 | 6.00e-90 | 280 |
| Msa0227930 | MtrunA17_Chr1g0162971 | 48.923 | 325 | 131 | 8 | 1 | 314 | 65 | 365 | 1.72e-89 | 278 |
| Msa0227930 | MtrunA17_Chr1g0185121 | 49.221 | 321 | 103 | 8 | 1 | 316 | 64 | 329 | 4.93e-87 | 271 |
| Msa0227930 | MtrunA17_Chr2g0330171 | 84.173 | 139 | 18 | 1 | 1 | 135 | 70 | 208 | 1.43e-86 | 271 |
| Msa0227930 | MtrunA17_Chr8g0342421 | 84.173 | 139 | 18 | 1 | 1 | 135 | 86 | 224 | 3.29e-85 | 269 |
| Msa0227930 | MtrunA17_Chr1g0210821 | 47.522 | 343 | 153 | 8 | 1 | 317 | 68 | 409 | 4.13e-85 | 270 |
| Msa0227930 | MtrunA17_Chr7g0263941 | 61.951 | 205 | 67 | 3 | 1 | 201 | 58 | 255 | 5.79e-85 | 265 |
| Msa0227930 | MtrunA17_Chr1g0163001 | 84.173 | 139 | 18 | 1 | 1 | 135 | 67 | 205 | 6.70e-85 | 268 |
| Msa0227930 | MtrunA17_Chr1g0199101 | 81.884 | 138 | 21 | 1 | 1 | 134 | 71 | 208 | 2.21e-83 | 265 |
| Msa0227930 | MtrunA17_Chr1g0151351 | 79.720 | 143 | 24 | 1 | 1 | 138 | 65 | 207 | 1.10e-82 | 260 |
| Msa0227930 | MtrunA17_Chr2g0326381 | 67.836 | 171 | 41 | 3 | 1 | 166 | 56 | 217 | 1.04e-81 | 256 |
| Msa0227930 | MtrunA17_Chr2g0324991 | 93.220 | 118 | 4 | 1 | 1 | 114 | 16 | 133 | 1.49e-79 | 242 |
| Msa0227930 | MtrunA17_Chr3g0141431 | 73.134 | 134 | 31 | 1 | 1 | 129 | 46 | 179 | 2.14e-73 | 235 |
| Msa0227930 | MtrunA17_Chr6g0479921 | 61.364 | 132 | 46 | 2 | 1 | 127 | 53 | 184 | 4.07e-54 | 186 |
| Msa0227930 | MtrunA17_Chr8g0375521 | 60.606 | 132 | 46 | 2 | 1 | 126 | 51 | 182 | 1.50e-53 | 183 |
| Msa0227930 | MtrunA17_Chr1g0200421 | 35.461 | 141 | 75 | 4 | 1 | 125 | 246 | 386 | 3.50e-19 | 89.4 |
| Msa0227930 | MtrunA17_Chr4g0053341 | 36.232 | 138 | 74 | 5 | 1 | 125 | 82 | 218 | 1.18e-18 | 84.7 |
| Msa0227930 | MtrunA17_Chr2g0320341 | 33.803 | 142 | 72 | 4 | 1 | 122 | 239 | 378 | 3.16e-18 | 85.9 |
| Msa0227930 | MtrunA17_Chr5g0422571 | 34.969 | 163 | 86 | 7 | 1 | 148 | 109 | 266 | 5.04e-18 | 84.0 |
| Msa0227930 | MtrunA17_Chr3g0123941 | 34.307 | 137 | 78 | 3 | 1 | 125 | 132 | 268 | 6.85e-18 | 84.3 |
| Msa0227930 | MtrunA17_Chr2g0321291 | 38.060 | 134 | 69 | 5 | 5 | 125 | 145 | 277 | 3.81e-17 | 81.6 |
| Msa0227930 | MtrunA17_Chr8g0382121 | 35.766 | 137 | 73 | 5 | 1 | 122 | 120 | 256 | 8.75e-17 | 80.5 |
| Msa0227930 | MtrunA17_Chr7g0258011 | 33.333 | 153 | 80 | 6 | 1 | 132 | 184 | 335 | 1.07e-16 | 80.9 |
| Msa0227930 | MtrunA17_Chr8g0352011 | 36.957 | 138 | 73 | 6 | 1 | 125 | 174 | 310 | 1.16e-16 | 80.5 |
| Msa0227930 | MtrunA17_Chr4g0026521 | 36.567 | 134 | 71 | 5 | 5 | 125 | 130 | 262 | 3.00e-16 | 79.0 |
| Msa0227930 | MtrunA17_Chr1g0173841 | 34.058 | 138 | 77 | 5 | 1 | 125 | 223 | 359 | 8.27e-16 | 78.6 |
| Msa0227930 | MtrunA17_Chr2g0328921 | 33.333 | 138 | 78 | 5 | 1 | 125 | 146 | 282 | 9.83e-16 | 77.4 |
| Msa0227930 | MtrunA17_Chr1g0198651 | 35.333 | 150 | 78 | 7 | 1 | 133 | 110 | 257 | 1.09e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227930 | AT1G03840.2 | 48.081 | 443 | 166 | 14 | 1 | 394 | 63 | 490 | 2.00e-111 | 336 |
| Msa0227930 | AT1G03840.1 | 48.081 | 443 | 166 | 14 | 1 | 394 | 65 | 492 | 2.69e-111 | 336 |
| Msa0227930 | AT5G44160.1 | 48.402 | 438 | 136 | 15 | 1 | 394 | 61 | 452 | 2.55e-109 | 330 |
| Msa0227930 | AT5G44160.2 | 48.402 | 438 | 136 | 15 | 1 | 394 | 22 | 413 | 2.60e-109 | 328 |
| Msa0227930 | AT4G02670.2 | 80.405 | 148 | 24 | 1 | 1 | 143 | 79 | 226 | 1.39e-88 | 274 |
| Msa0227930 | AT4G02670.1 | 80.405 | 148 | 24 | 1 | 1 | 143 | 77 | 224 | 1.43e-88 | 274 |
| Msa0227930 | AT2G02080.6 | 46.418 | 349 | 137 | 11 | 1 | 323 | 1 | 325 | 1.86e-87 | 273 |
| Msa0227930 | AT2G02080.2 | 46.418 | 349 | 137 | 11 | 1 | 323 | 1 | 325 | 1.86e-87 | 273 |
| Msa0227930 | AT2G02080.1 | 46.705 | 349 | 136 | 11 | 1 | 323 | 78 | 402 | 5.79e-87 | 273 |
| Msa0227930 | AT2G02080.4 | 46.705 | 349 | 136 | 11 | 1 | 323 | 78 | 402 | 5.79e-87 | 273 |
| Msa0227930 | AT2G02080.5 | 46.705 | 349 | 136 | 11 | 1 | 323 | 78 | 402 | 5.79e-87 | 273 |
| Msa0227930 | AT2G02080.3 | 46.705 | 349 | 136 | 11 | 1 | 323 | 78 | 402 | 5.79e-87 | 273 |
| Msa0227930 | AT5G66730.1 | 83.453 | 139 | 19 | 1 | 1 | 135 | 56 | 194 | 2.58e-85 | 269 |
| Msa0227930 | AT1G55110.3 | 82.857 | 140 | 19 | 1 | 1 | 135 | 87 | 226 | 6.11e-85 | 266 |
| Msa0227930 | AT1G55110.1 | 82.857 | 140 | 19 | 1 | 1 | 135 | 87 | 226 | 6.11e-85 | 266 |
| Msa0227930 | AT1G55110.2 | 82.857 | 140 | 19 | 1 | 1 | 135 | 87 | 226 | 6.11e-85 | 266 |
| Msa0227930 | AT3G45260.2 | 42.543 | 409 | 161 | 14 | 1 | 394 | 63 | 412 | 1.48e-84 | 265 |
| Msa0227930 | AT3G45260.1 | 42.543 | 409 | 161 | 14 | 1 | 394 | 63 | 412 | 1.48e-84 | 265 |
| Msa0227930 | AT3G13810.6 | 83.571 | 140 | 18 | 1 | 1 | 135 | 75 | 214 | 3.03e-83 | 263 |
| Msa0227930 | AT3G13810.4 | 83.571 | 140 | 18 | 1 | 1 | 135 | 94 | 233 | 3.85e-83 | 264 |
| Msa0227930 | AT3G13810.1 | 83.571 | 140 | 18 | 1 | 1 | 135 | 94 | 233 | 3.85e-83 | 264 |
| Msa0227930 | AT3G13810.5 | 83.571 | 140 | 18 | 1 | 1 | 135 | 89 | 228 | 4.24e-83 | 263 |
| Msa0227930 | AT3G13810.3 | 83.571 | 140 | 18 | 1 | 1 | 135 | 81 | 220 | 5.80e-83 | 263 |
| Msa0227930 | AT3G13810.2 | 83.571 | 140 | 18 | 1 | 1 | 135 | 95 | 234 | 8.36e-83 | 263 |
| Msa0227930 | AT2G02070.2 | 80.576 | 139 | 23 | 1 | 1 | 135 | 76 | 214 | 5.60e-82 | 263 |
| Msa0227930 | AT2G02070.1 | 80.576 | 139 | 23 | 1 | 1 | 135 | 76 | 214 | 5.60e-82 | 263 |
| Msa0227930 | AT1G14580.1 | 78.417 | 139 | 26 | 1 | 1 | 135 | 77 | 215 | 8.15e-81 | 256 |
| Msa0227930 | AT1G14580.2 | 78.417 | 139 | 26 | 1 | 1 | 135 | 77 | 215 | 8.15e-81 | 256 |
| Msa0227930 | AT1G14580.3 | 78.417 | 139 | 26 | 1 | 1 | 135 | 91 | 229 | 1.24e-80 | 256 |
| Msa0227930 | AT5G60470.1 | 74.468 | 141 | 31 | 1 | 1 | 136 | 59 | 199 | 9.88e-78 | 248 |
| Msa0227930 | AT5G60470.2 | 74.468 | 141 | 31 | 1 | 1 | 136 | 68 | 208 | 1.63e-77 | 248 |
| Msa0227930 | AT5G60470.3 | 74.468 | 141 | 31 | 1 | 1 | 136 | 64 | 204 | 1.89e-77 | 247 |
| Msa0227930 | AT2G01940.1 | 61.940 | 134 | 45 | 2 | 1 | 128 | 68 | 201 | 3.16e-55 | 189 |
| Msa0227930 | AT1G25250.3 | 61.654 | 133 | 44 | 2 | 1 | 126 | 57 | 189 | 2.35e-54 | 185 |
| Msa0227930 | AT1G25250.1 | 61.654 | 133 | 44 | 2 | 1 | 126 | 34 | 166 | 2.37e-54 | 184 |
| Msa0227930 | AT1G68130.1 | 62.121 | 132 | 44 | 2 | 1 | 126 | 65 | 196 | 3.50e-54 | 185 |
| Msa0227930 | AT2G01940.3 | 60.741 | 135 | 46 | 3 | 1 | 128 | 68 | 202 | 2.44e-51 | 179 |
| Msa0227930 | AT2G01940.2 | 61.607 | 112 | 37 | 2 | 23 | 128 | 1 | 112 | 3.97e-42 | 152 |
| Msa0227930 | AT1G68130.2 | 60.909 | 110 | 37 | 2 | 23 | 126 | 1 | 110 | 3.75e-41 | 149 |
| Msa0227930 | AT1G25250.2 | 60.360 | 111 | 37 | 2 | 23 | 126 | 1 | 111 | 6.32e-41 | 147 |
| Msa0227930 | AT1G34370.2 | 36.364 | 143 | 73 | 4 | 1 | 125 | 239 | 381 | 3.94e-19 | 89.7 |
| Msa0227930 | AT1G34370.1 | 36.364 | 143 | 73 | 4 | 1 | 125 | 239 | 381 | 3.94e-19 | 89.7 |
| Msa0227930 | AT1G34370.3 | 36.364 | 143 | 73 | 4 | 1 | 125 | 29 | 171 | 4.60e-19 | 87.4 |
| Msa0227930 | AT5G22890.1 | 34.286 | 140 | 74 | 3 | 1 | 122 | 212 | 351 | 1.87e-18 | 86.7 |
| Msa0227930 | AT1G34790.1 | 35.507 | 138 | 75 | 5 | 1 | 125 | 140 | 276 | 2.45e-17 | 82.4 |
| Msa0227930 | AT1G13290.1 | 32.727 | 165 | 87 | 8 | 1 | 150 | 96 | 251 | 8.95e-17 | 80.9 |
| Msa0227930 | AT3G20880.1 | 33.333 | 138 | 78 | 5 | 1 | 125 | 251 | 387 | 2.58e-16 | 80.9 |
| Msa0227930 | AT1G51220.1 | 32.609 | 138 | 79 | 5 | 1 | 125 | 173 | 309 | 6.18e-16 | 79.0 |
| Msa0227930 | AT3G57670.1 | 33.333 | 138 | 78 | 5 | 1 | 125 | 212 | 348 | 1.28e-15 | 78.6 |
| Msa0227930 | AT1G08290.1 | 36.765 | 136 | 69 | 6 | 5 | 125 | 179 | 312 | 1.76e-15 | 77.4 |
Find 68 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATCAGGTTTATCTCTT+TGG | 0.192108 | 2_1:+79250766 | Msa0227930:CDS |
| GAAGAAACAGCTAGAATAAA+TGG | 0.212216 | 2_1:+79250585 | Msa0227930:CDS |
| TGTATAGTGCAAATGAAAAT+TGG | 0.226846 | 2_1:+79250880 | Msa0227930:CDS |
| CAATCATCCTTCAAGGGCTT+TGG | 0.260521 | 2_1:+79249608 | Msa0227930:CDS |
| AATATAAACAACTCATTATT+AGG | 0.262088 | 2_1:+79250615 | Msa0227930:CDS |
| AGGGCTTTGGGAGACTTAAC+TGG | 0.275104 | 2_1:+79249621 | Msa0227930:CDS |
| CTCTTGACATCCATTATTAG+AGG | 0.287901 | 2_1:-79250922 | None:intergenic |
| AATAAATTCTCCTCTAATAA+TGG | 0.294626 | 2_1:+79250912 | Msa0227930:CDS |
| GATCTAGATGTTTGATTAGT+TGG | 0.313962 | 2_1:-79250750 | None:intergenic |
| TAACATCGATAATAATAATA+AGG | 0.320786 | 2_1:+79250980 | Msa0227930:CDS |
| CTGCATGCGACGTCGTTTCA+TGG | 0.334137 | 2_1:-79251306 | None:intergenic |
| TCGATGTTATTATTAACTAA+TGG | 0.340481 | 2_1:-79250966 | None:intergenic |
| TGCAGAATGAAGAGAGCGTT+TGG | 0.365539 | 2_1:+79251324 | Msa0227930:CDS |
| TCAGCAGAGAGCTACATTTC+AGG | 0.365625 | 2_1:+79251263 | Msa0227930:CDS |
| GCAAATGAAAATTGGGTGTT+TGG | 0.367718 | 2_1:+79250888 | Msa0227930:CDS |
| GTGTGTGAAATTTGTCTAAA+GGG | 0.373283 | 2_1:+79249458 | Msa0227930:CDS |
| TCATTATTCCTTGGAAGCTT+AGG | 0.378657 | 2_1:+79251149 | Msa0227930:CDS |
| TCTTGATTTGTGCATGAGAT+TGG | 0.386882 | 2_1:-79250726 | None:intergenic |
| AATCATCCTTCAAGGGCTTT+GGG | 0.387364 | 2_1:+79249609 | Msa0227930:CDS |
| GTACTTGCAACAAGTGATCT+TGG | 0.393658 | 2_1:+79251239 | Msa0227930:CDS |
| TTTGATGATGAGATTGTGAT+TGG | 0.412049 | 2_1:-79251055 | None:intergenic |
| GCAGAATGAAGAGAGCGTTT+GGG | 0.418512 | 2_1:+79251325 | Msa0227930:CDS |
| GACAAATTTCACACACGAAT+CGG | 0.419935 | 2_1:-79249451 | None:intergenic |
| CGTGTGTGAAATTTGTCTAA+AGG | 0.423777 | 2_1:+79249457 | Msa0227930:CDS |
| TCTAGCTGTTTCTTCTGCTA+AGG | 0.433712 | 2_1:-79250577 | None:intergenic |
| TGCATGCGACGTCGTTTCAT+GGG | 0.435103 | 2_1:-79251305 | None:intergenic |
| GTGTTCACAATCATCCTTCA+AGG | 0.445387 | 2_1:+79249601 | Msa0227930:CDS |
| TTTATGCTGTTCAATCGGAT+TGG | 0.446458 | 2_1:+79249709 | Msa0227930:CDS |
| TCAACTGAATCATTATTCCT+TGG | 0.446740 | 2_1:+79251140 | Msa0227930:CDS |
| AACAACTCATTATTAGGAAT+GGG | 0.451735 | 2_1:+79250621 | Msa0227930:CDS |
| AAGTCTCCCAAAGCCCTTGA+AGG | 0.467713 | 2_1:-79249615 | None:intergenic |
| GACGTGGACATAACCTTCCT+TGG | 0.468137 | 2_1:+79249513 | Msa0227930:CDS |
| TTGTGAACACATGTCTTCTC+TGG | 0.471074 | 2_1:-79249588 | None:intergenic |
| AAACAACTCATTATTAGGAA+TGG | 0.474295 | 2_1:+79250620 | Msa0227930:CDS |
| AGAGCGTTTGGGGACAAACT+AGG | 0.488786 | 2_1:+79251336 | Msa0227930:CDS |
| ATGCATGAGATTCATCAACT+TGG | 0.490859 | 2_1:+79250834 | Msa0227930:CDS |
| TACTTGCAACAAGTGATCTT+GGG | 0.493836 | 2_1:+79251240 | Msa0227930:CDS |
| GTATAGTGCAAATGAAAATT+GGG | 0.498164 | 2_1:+79250881 | Msa0227930:CDS |
| AATAGTCCAAGTCAAGATCA+TGG | 0.501314 | 2_1:+79251182 | Msa0227930:CDS |
| GGAAGCACGGTGAGAAGAAG+TGG | 0.504824 | 2_1:+79249664 | Msa0227930:CDS |
| GAGCGTTTGGGGACAAACTA+GGG | 0.510953 | 2_1:+79251337 | Msa0227930:CDS |
| TTATTCCCATGATCTTGACT+TGG | 0.518278 | 2_1:-79251188 | None:intergenic |
| GGGATAGCTTTGTCACTCAC+AGG | 0.519723 | 2_1:+79250541 | Msa0227930:CDS |
| ACTAATCAAACATCTAGATC+AGG | 0.520793 | 2_1:+79250753 | Msa0227930:CDS |
| AATTCTCTTGTCCCAAACAT+AGG | 0.523465 | 2_1:+79250678 | Msa0227930:CDS |
| CTTGGGTCCGCTACAAGCAC+AGG | 0.540913 | 2_1:+79250852 | Msa0227930:CDS |
| GATTGATGAACTGTGGCAAA+TGG | 0.542982 | 2_1:-79251385 | None:intergenic |
| ATCTCAAACCTAAGCTTCCA+AGG | 0.557018 | 2_1:-79251157 | None:intergenic |
| GCATGCGACGTCGTTTCATG+GGG | 0.563017 | 2_1:-79251304 | None:intergenic |
| TGCATGAGATTCATCAACTT+GGG | 0.577843 | 2_1:+79250835 | Msa0227930:CDS |
| ATAGTCCAAGTCAAGATCAT+GGG | 0.586895 | 2_1:+79251183 | Msa0227930:CDS |
| GGAATGGGAGTTAACAACAT+TGG | 0.588635 | 2_1:+79250636 | Msa0227930:CDS |
| TGCCACAGTTCATCAATCAA+CGG | 0.590617 | 2_1:+79251390 | Msa0227930:CDS |
| TGTTCACAATCATCCTTCAA+GGG | 0.591498 | 2_1:+79249602 | Msa0227930:CDS |
| GGGCTTTGGGAGACTTAACT+GGG | 0.593735 | 2_1:+79249622 | Msa0227930:CDS |
| CAGAATGAAGAGAGCGTTTG+GGG | 0.617026 | 2_1:+79251326 | Msa0227930:CDS |
| CATTGCTCCTGTGCTTGTAG+CGG | 0.619229 | 2_1:-79250859 | None:intergenic |
| ACAGTTCATCAATCAACGGA+TGG | 0.619902 | 2_1:+79251394 | Msa0227930:CDS |
| ATGCGACGTCGTTTCATGGG+GGG | 0.625847 | 2_1:-79251302 | None:intergenic |
| TGTTGCTGACATGTTTGCAG+AGG | 0.649923 | 2_1:-79251081 | None:intergenic |
| CATGCGACGTCGTTTCATGG+GGG | 0.652534 | 2_1:-79251303 | None:intergenic |
| TTGGTGTTGTGAGCTATACA+AGG | 0.662064 | 2_1:-79251036 | None:intergenic |
| AAAGCTCACTCAAAGACTTG+TGG | 0.665203 | 2_1:+79249732 | Msa0227930:CDS |
| TGTTGTGAGCTATACAAGGA+AGG | 0.666542 | 2_1:-79251032 | None:intergenic |
| GGATAGCTTTGTCACTCACA+GGG | 0.679845 | 2_1:+79250542 | Msa0227930:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.689229 | 2_1:+79249759 | Msa0227930:CDS |
| AATCTTCAACTTCATCGACG+TGG | 0.715188 | 2_1:+79249497 | Msa0227930:CDS |
| ATCCGTTGATTGATGAACTG+TGG | 0.722662 | 2_1:-79251392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATGGAATAAAATAAAA+GGG | + | chr2_1:79250080-79250099 | Msa0227930:intron | 10.0% |
| !! | ATCAACAATAAATAAAAAAT+GGG | - | chr2_1:79250489-79250508 | None:intergenic | 10.0% |
| !! | AATCAACAATAAATAAAAAA+TGG | - | chr2_1:79250490-79250509 | None:intergenic | 10.0% |
| !! | TTATATGGAATAAAATAAAA+GGG | + | chr2_1:79250080-79250099 | Msa0227930:intron | 10.0% |
| !! | ATCAACAATAAATAAAAAAT+GGG | - | chr2_1:79250489-79250508 | None:intergenic | 10.0% |
| !! | AATCAACAATAAATAAAAAA+TGG | - | chr2_1:79250490-79250509 | None:intergenic | 10.0% |
| !! | AAAAAGGTAATAAACTTAAA+AGG | - | chr2_1:79249908-79249927 | None:intergenic | 15.0% |
| !! | CTTATATGGAATAAAATAAA+AGG | + | chr2_1:79250079-79250098 | Msa0227930:intron | 15.0% |
| !!! | TTGTTTATAATTTAGAATAG+AGG | + | chr2_1:79250405-79250424 | Msa0227930:intron | 15.0% |
| !!! | TGTTTATAATTTAGAATAGA+GGG | + | chr2_1:79250406-79250425 | Msa0227930:intron | 15.0% |
| !! | GATTACTTATCAATATAATT+TGG | + | chr2_1:79250506-79250525 | Msa0227930:intron | 15.0% |
| !! | AATATAAACAACTCATTATT+AGG | + | chr2_1:79250615-79250634 | Msa0227930:CDS | 15.0% |
| !! | TAACATCGATAATAATAATA+AGG | + | chr2_1:79250980-79250999 | Msa0227930:CDS | 15.0% |
| !! | AAAAAGGTAATAAACTTAAA+AGG | - | chr2_1:79249908-79249927 | None:intergenic | 15.0% |
| !! | CTTATATGGAATAAAATAAA+AGG | + | chr2_1:79250079-79250098 | Msa0227930:intron | 15.0% |
| !!! | TTGTTTATAATTTAGAATAG+AGG | + | chr2_1:79250405-79250424 | Msa0227930:intron | 15.0% |
| !!! | TGTTTATAATTTAGAATAGA+GGG | + | chr2_1:79250406-79250425 | Msa0227930:intron | 15.0% |
| !! | GATTACTTATCAATATAATT+TGG | + | chr2_1:79250506-79250525 | Msa0227930:intron | 15.0% |
| !! | AATATAAACAACTCATTATT+AGG | + | chr2_1:79250615-79250634 | Msa0227930:CDS | 15.0% |
| !! | TAACATCGATAATAATAATA+AGG | + | chr2_1:79250980-79250999 | Msa0227930:CDS | 15.0% |
| !! | AAAGAACAAGTAAAGAAATA+AGG | + | chr2_1:79249547-79249566 | Msa0227930:intron | 20.0% |
| !!! | AAAATTTTATGCTGTTCAAT+CGG | + | chr2_1:79249704-79249723 | Msa0227930:CDS | 20.0% |
| !! | AAATAATAATCACAAAGGAA+AGG | - | chr2_1:79250006-79250025 | None:intergenic | 20.0% |
| !! | AACAGAAATAATAATCACAA+AGG | - | chr2_1:79250011-79250030 | None:intergenic | 20.0% |
| !! | TAATTACTTTGACTAATTTG+AGG | + | chr2_1:79250032-79250051 | Msa0227930:intron | 20.0% |
| !! | AATTACTTTGACTAATTTGA+GGG | + | chr2_1:79250033-79250052 | Msa0227930:intron | 20.0% |
| !!! | AGTTTTTCTCTCTAAAATAA+CGG | + | chr2_1:79250171-79250190 | Msa0227930:intron | 20.0% |
| !! | AGAATTAGTATAACATAACT+AGG | - | chr2_1:79250454-79250473 | None:intergenic | 20.0% |
| !! | AATAAATTCTCCTCTAATAA+TGG | + | chr2_1:79250912-79250931 | Msa0227930:CDS | 20.0% |
| !! | TCGATGTTATTATTAACTAA+TGG | - | chr2_1:79250969-79250988 | None:intergenic | 20.0% |
| !! | AAAGAACAAGTAAAGAAATA+AGG | + | chr2_1:79249547-79249566 | Msa0227930:intron | 20.0% |
| !!! | AAAATTTTATGCTGTTCAAT+CGG | + | chr2_1:79249704-79249723 | Msa0227930:CDS | 20.0% |
| !! | AAATAATAATCACAAAGGAA+AGG | - | chr2_1:79250006-79250025 | None:intergenic | 20.0% |
| !! | AACAGAAATAATAATCACAA+AGG | - | chr2_1:79250011-79250030 | None:intergenic | 20.0% |
| !! | TAATTACTTTGACTAATTTG+AGG | + | chr2_1:79250032-79250051 | Msa0227930:intron | 20.0% |
| !! | AATTACTTTGACTAATTTGA+GGG | + | chr2_1:79250033-79250052 | Msa0227930:intron | 20.0% |
| !!! | AGTTTTTCTCTCTAAAATAA+CGG | + | chr2_1:79250171-79250190 | Msa0227930:intron | 20.0% |
| !! | AGAATTAGTATAACATAACT+AGG | - | chr2_1:79250454-79250473 | None:intergenic | 20.0% |
| !! | AATAAATTCTCCTCTAATAA+TGG | + | chr2_1:79250912-79250931 | Msa0227930:CDS | 20.0% |
| !! | TCGATGTTATTATTAACTAA+TGG | - | chr2_1:79250969-79250988 | None:intergenic | 20.0% |
| ! | GTTATTAGCTACTAATAGTT+TGG | + | chr2_1:79249950-79249969 | Msa0227930:intron | 25.0% |
| !! | TGGAAAATAGAAGTCTTATA+TGG | + | chr2_1:79250065-79250084 | Msa0227930:intron | 25.0% |
| ! | CAAAAATGTACATTTACTTC+TGG | - | chr2_1:79250388-79250407 | None:intergenic | 25.0% |
| ! | TATAACATAACTAGGTTGTA+GGG | - | chr2_1:79250446-79250465 | None:intergenic | 25.0% |
| ! | AAACAACTCATTATTAGGAA+TGG | + | chr2_1:79250620-79250639 | Msa0227930:CDS | 25.0% |
| ! | AACAACTCATTATTAGGAAT+GGG | + | chr2_1:79250621-79250640 | Msa0227930:CDS | 25.0% |
| ! | AAAAATGAGTTCCTATGTTT+GGG | - | chr2_1:79250692-79250711 | None:intergenic | 25.0% |
| ! | TGTATAGTGCAAATGAAAAT+TGG | + | chr2_1:79250880-79250899 | Msa0227930:CDS | 25.0% |
| ! | GTATAGTGCAAATGAAAATT+GGG | + | chr2_1:79250881-79250900 | Msa0227930:CDS | 25.0% |
| !! | ATCATGGGAATAAATTTTGT+GGG | + | chr2_1:79251198-79251217 | Msa0227930:CDS | 25.0% |
| ! | GTTATTAGCTACTAATAGTT+TGG | + | chr2_1:79249950-79249969 | Msa0227930:intron | 25.0% |
| !! | TGGAAAATAGAAGTCTTATA+TGG | + | chr2_1:79250065-79250084 | Msa0227930:intron | 25.0% |
| ! | CAAAAATGTACATTTACTTC+TGG | - | chr2_1:79250388-79250407 | None:intergenic | 25.0% |
| ! | TATAACATAACTAGGTTGTA+GGG | - | chr2_1:79250446-79250465 | None:intergenic | 25.0% |
| ! | AAACAACTCATTATTAGGAA+TGG | + | chr2_1:79250620-79250639 | Msa0227930:CDS | 25.0% |
| ! | AACAACTCATTATTAGGAAT+GGG | + | chr2_1:79250621-79250640 | Msa0227930:CDS | 25.0% |
| ! | AAAAATGAGTTCCTATGTTT+GGG | - | chr2_1:79250692-79250711 | None:intergenic | 25.0% |
| ! | TGTATAGTGCAAATGAAAAT+TGG | + | chr2_1:79250880-79250899 | Msa0227930:CDS | 25.0% |
| ! | GTATAGTGCAAATGAAAATT+GGG | + | chr2_1:79250881-79250900 | Msa0227930:CDS | 25.0% |
| !! | ATCATGGGAATAAATTTTGT+GGG | + | chr2_1:79251198-79251217 | Msa0227930:CDS | 25.0% |
| GTGTGTGAAATTTGTCTAAA+GGG | + | chr2_1:79249458-79249477 | Msa0227930:CDS | 30.0% | |
| ! | TTTGTCTAAAGGGTTTTCAA+AGG | + | chr2_1:79249468-79249487 | Msa0227930:CDS | 30.0% |
| ! | TTGTCTAAAGGGTTTTCAAA+GGG | + | chr2_1:79249469-79249488 | Msa0227930:CDS | 30.0% |
| !!! | TTCTTTGTTTTTAGCTTCCA+AGG | - | chr2_1:79249533-79249552 | None:intergenic | 30.0% |
| ! | GCTACTAATAGTTTGGATTT+TGG | + | chr2_1:79249957-79249976 | Msa0227930:intron | 30.0% |
| CCAAGAGAATTTATCCAATT+AGG | - | chr2_1:79250250-79250269 | None:intergenic | 30.0% | |
| CCTAATTGGATAAATTCTCT+TGG | + | chr2_1:79250247-79250266 | Msa0227930:intron | 30.0% | |
| GTATAACATAACTAGGTTGT+AGG | - | chr2_1:79250447-79250466 | None:intergenic | 30.0% | |
| !! | AATATAATTTGGTGCAACAC+AGG | + | chr2_1:79250517-79250536 | Msa0227930:intron | 30.0% |
| GAAGAAACAGCTAGAATAAA+TGG | + | chr2_1:79250585-79250604 | Msa0227930:CDS | 30.0% | |
| GAAAAATGAGTTCCTATGTT+TGG | - | chr2_1:79250693-79250712 | None:intergenic | 30.0% | |
| GATCTAGATGTTTGATTAGT+TGG | - | chr2_1:79250753-79250772 | None:intergenic | 30.0% | |
| ACTAATCAAACATCTAGATC+AGG | + | chr2_1:79250753-79250772 | Msa0227930:CDS | 30.0% | |
| !! | TTTGATGATGAGATTGTGAT+TGG | - | chr2_1:79251058-79251077 | None:intergenic | 30.0% |
| TCAACTGAATCATTATTCCT+TGG | + | chr2_1:79251140-79251159 | Msa0227930:CDS | 30.0% | |
| ! | GATCATGGGAATAAATTTTG+TGG | + | chr2_1:79251197-79251216 | Msa0227930:CDS | 30.0% |
| ! | TCATGGGAATAAATTTTGTG+GGG | + | chr2_1:79251199-79251218 | Msa0227930:CDS | 30.0% |
| ! | AATAAATTTTGTGGGGTGTA+TGG | + | chr2_1:79251206-79251225 | Msa0227930:CDS | 30.0% |
| GTGTGTGAAATTTGTCTAAA+GGG | + | chr2_1:79249458-79249477 | Msa0227930:CDS | 30.0% | |
| ! | TTTGTCTAAAGGGTTTTCAA+AGG | + | chr2_1:79249468-79249487 | Msa0227930:CDS | 30.0% |
| ! | TTGTCTAAAGGGTTTTCAAA+GGG | + | chr2_1:79249469-79249488 | Msa0227930:CDS | 30.0% |
| !!! | TTCTTTGTTTTTAGCTTCCA+AGG | - | chr2_1:79249533-79249552 | None:intergenic | 30.0% |
| ! | GCTACTAATAGTTTGGATTT+TGG | + | chr2_1:79249957-79249976 | Msa0227930:intron | 30.0% |
| CCAAGAGAATTTATCCAATT+AGG | - | chr2_1:79250250-79250269 | None:intergenic | 30.0% | |
| CCTAATTGGATAAATTCTCT+TGG | + | chr2_1:79250247-79250266 | Msa0227930:intron | 30.0% | |
| GTATAACATAACTAGGTTGT+AGG | - | chr2_1:79250447-79250466 | None:intergenic | 30.0% | |
| !! | AATATAATTTGGTGCAACAC+AGG | + | chr2_1:79250517-79250536 | Msa0227930:intron | 30.0% |
| GAAGAAACAGCTAGAATAAA+TGG | + | chr2_1:79250585-79250604 | Msa0227930:CDS | 30.0% | |
| GAAAAATGAGTTCCTATGTT+TGG | - | chr2_1:79250693-79250712 | None:intergenic | 30.0% | |
| GATCTAGATGTTTGATTAGT+TGG | - | chr2_1:79250753-79250772 | None:intergenic | 30.0% | |
| ACTAATCAAACATCTAGATC+AGG | + | chr2_1:79250753-79250772 | Msa0227930:CDS | 30.0% | |
| !! | TTTGATGATGAGATTGTGAT+TGG | - | chr2_1:79251058-79251077 | None:intergenic | 30.0% |
| TCAACTGAATCATTATTCCT+TGG | + | chr2_1:79251140-79251159 | Msa0227930:CDS | 30.0% | |
| ! | GATCATGGGAATAAATTTTG+TGG | + | chr2_1:79251197-79251216 | Msa0227930:CDS | 30.0% |
| ! | TCATGGGAATAAATTTTGTG+GGG | + | chr2_1:79251199-79251218 | Msa0227930:CDS | 30.0% |
| ! | AATAAATTTTGTGGGGTGTA+TGG | + | chr2_1:79251206-79251225 | Msa0227930:CDS | 30.0% |
| GACAAATTTCACACACGAAT+CGG | - | chr2_1:79249454-79249473 | None:intergenic | 35.0% | |
| CGTGTGTGAAATTTGTCTAA+AGG | + | chr2_1:79249457-79249476 | Msa0227930:CDS | 35.0% | |
| !!! | TTGTTTTTAGCTTCCAAGGA+AGG | - | chr2_1:79249529-79249548 | None:intergenic | 35.0% |
| TGTTCACAATCATCCTTCAA+GGG | + | chr2_1:79249602-79249621 | Msa0227930:CDS | 35.0% | |
| !!! | GGATAAAGAAGCACTTTTGT+AGG | + | chr2_1:79249643-79249662 | Msa0227930:CDS | 35.0% |
| TTTATGCTGTTCAATCGGAT+TGG | + | chr2_1:79249709-79249728 | Msa0227930:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | + | chr2_1:79249759-79249778 | Msa0227930:CDS | 35.0% | |
| !! | ACTTGTCTAGTGCTCTAAAA+TGG | + | chr2_1:79249865-79249884 | Msa0227930:intron | 35.0% |
| TAATTTGAGGGTTGAGATTG+TGG | + | chr2_1:79250045-79250064 | Msa0227930:intron | 35.0% | |
| AAAGGGACTTAAATCCTCAA+CGG | + | chr2_1:79250097-79250116 | Msa0227930:intron | 35.0% | |
| AAAGTAGAGTGAAGCCTAAT+TGG | + | chr2_1:79250233-79250252 | Msa0227930:intron | 35.0% | |
| !! | CCCTATTGAAATTTTAGCGT+CGG | - | chr2_1:79250313-79250332 | None:intergenic | 35.0% |
| CCGACGCTAAAATTTCAATA+GGG | + | chr2_1:79250310-79250329 | Msa0227930:intron | 35.0% | |
| CGACGCTAAAATTTCAATAG+GGG | + | chr2_1:79250311-79250330 | Msa0227930:intron | 35.0% | |
| AATTCTCTTGTCCCAAACAT+AGG | + | chr2_1:79250678-79250697 | Msa0227930:CDS | 35.0% | |
| !! | TCTTGATTTGTGCATGAGAT+TGG | - | chr2_1:79250729-79250748 | None:intergenic | 35.0% |
| CTAGATCAGGTTTATCTCTT+TGG | + | chr2_1:79250766-79250785 | Msa0227930:CDS | 35.0% | |
| ATGCATGAGATTCATCAACT+TGG | + | chr2_1:79250834-79250853 | Msa0227930:CDS | 35.0% | |
| TGCATGAGATTCATCAACTT+GGG | + | chr2_1:79250835-79250854 | Msa0227930:CDS | 35.0% | |
| GCAAATGAAAATTGGGTGTT+TGG | + | chr2_1:79250888-79250907 | Msa0227930:CDS | 35.0% | |
| CTCTTGACATCCATTATTAG+AGG | - | chr2_1:79250925-79250944 | None:intergenic | 35.0% | |
| TTGCAAAAAGCTGCTCAAAT+TGG | + | chr2_1:79251110-79251129 | Msa0227930:CDS | 35.0% | |
| TGCAAAAAGCTGCTCAAATT+GGG | + | chr2_1:79251111-79251130 | Msa0227930:CDS | 35.0% | |
| TCATTATTCCTTGGAAGCTT+AGG | + | chr2_1:79251149-79251168 | Msa0227930:CDS | 35.0% | |
| AATAGTCCAAGTCAAGATCA+TGG | + | chr2_1:79251182-79251201 | Msa0227930:CDS | 35.0% | |
| ATAGTCCAAGTCAAGATCAT+GGG | + | chr2_1:79251183-79251202 | Msa0227930:CDS | 35.0% | |
| TTATTCCCATGATCTTGACT+TGG | - | chr2_1:79251191-79251210 | None:intergenic | 35.0% | |
| TACTTGCAACAAGTGATCTT+GGG | + | chr2_1:79251240-79251259 | Msa0227930:CDS | 35.0% | |
| GACAAATTTCACACACGAAT+CGG | - | chr2_1:79249454-79249473 | None:intergenic | 35.0% | |
| CGTGTGTGAAATTTGTCTAA+AGG | + | chr2_1:79249457-79249476 | Msa0227930:CDS | 35.0% | |
| !!! | TTGTTTTTAGCTTCCAAGGA+AGG | - | chr2_1:79249529-79249548 | None:intergenic | 35.0% |
| TGTTCACAATCATCCTTCAA+GGG | + | chr2_1:79249602-79249621 | Msa0227930:CDS | 35.0% | |
| !!! | GGATAAAGAAGCACTTTTGT+AGG | + | chr2_1:79249643-79249662 | Msa0227930:CDS | 35.0% |
| TTTATGCTGTTCAATCGGAT+TGG | + | chr2_1:79249709-79249728 | Msa0227930:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | + | chr2_1:79249759-79249778 | Msa0227930:CDS | 35.0% | |
| !! | ACTTGTCTAGTGCTCTAAAA+TGG | + | chr2_1:79249865-79249884 | Msa0227930:intron | 35.0% |
| TAATTTGAGGGTTGAGATTG+TGG | + | chr2_1:79250045-79250064 | Msa0227930:intron | 35.0% | |
| AAAGGGACTTAAATCCTCAA+CGG | + | chr2_1:79250097-79250116 | Msa0227930:intron | 35.0% | |
| AAAGTAGAGTGAAGCCTAAT+TGG | + | chr2_1:79250233-79250252 | Msa0227930:intron | 35.0% | |
| !! | CCCTATTGAAATTTTAGCGT+CGG | - | chr2_1:79250313-79250332 | None:intergenic | 35.0% |
| CCGACGCTAAAATTTCAATA+GGG | + | chr2_1:79250310-79250329 | Msa0227930:intron | 35.0% | |
| CGACGCTAAAATTTCAATAG+GGG | + | chr2_1:79250311-79250330 | Msa0227930:intron | 35.0% | |
| AATTCTCTTGTCCCAAACAT+AGG | + | chr2_1:79250678-79250697 | Msa0227930:CDS | 35.0% | |
| !! | TCTTGATTTGTGCATGAGAT+TGG | - | chr2_1:79250729-79250748 | None:intergenic | 35.0% |
| CTAGATCAGGTTTATCTCTT+TGG | + | chr2_1:79250766-79250785 | Msa0227930:CDS | 35.0% | |
| ATGCATGAGATTCATCAACT+TGG | + | chr2_1:79250834-79250853 | Msa0227930:CDS | 35.0% | |
| TGCATGAGATTCATCAACTT+GGG | + | chr2_1:79250835-79250854 | Msa0227930:CDS | 35.0% | |
| GCAAATGAAAATTGGGTGTT+TGG | + | chr2_1:79250888-79250907 | Msa0227930:CDS | 35.0% | |
| CTCTTGACATCCATTATTAG+AGG | - | chr2_1:79250925-79250944 | None:intergenic | 35.0% | |
| TTGCAAAAAGCTGCTCAAAT+TGG | + | chr2_1:79251110-79251129 | Msa0227930:CDS | 35.0% | |
| TGCAAAAAGCTGCTCAAATT+GGG | + | chr2_1:79251111-79251130 | Msa0227930:CDS | 35.0% | |
| TCATTATTCCTTGGAAGCTT+AGG | + | chr2_1:79251149-79251168 | Msa0227930:CDS | 35.0% | |
| AATAGTCCAAGTCAAGATCA+TGG | + | chr2_1:79251182-79251201 | Msa0227930:CDS | 35.0% | |
| ATAGTCCAAGTCAAGATCAT+GGG | + | chr2_1:79251183-79251202 | Msa0227930:CDS | 35.0% | |
| TTATTCCCATGATCTTGACT+TGG | - | chr2_1:79251191-79251210 | None:intergenic | 35.0% | |
| TACTTGCAACAAGTGATCTT+GGG | + | chr2_1:79251240-79251259 | Msa0227930:CDS | 35.0% | |
| AATCTTCAACTTCATCGACG+TGG | + | chr2_1:79249497-79249516 | Msa0227930:CDS | 40.0% | |
| TTGTGAACACATGTCTTCTC+TGG | - | chr2_1:79249591-79249610 | None:intergenic | 40.0% | |
| GTGTTCACAATCATCCTTCA+AGG | + | chr2_1:79249601-79249620 | Msa0227930:CDS | 40.0% | |
| AATCATCCTTCAAGGGCTTT+GGG | + | chr2_1:79249609-79249628 | Msa0227930:CDS | 40.0% | |
| ! | AAGCACTTTTGTAGGAAGCA+CGG | + | chr2_1:79249651-79249670 | Msa0227930:CDS | 40.0% |
| AAAGCTCACTCAAAGACTTG+TGG | + | chr2_1:79249732-79249751 | Msa0227930:CDS | 40.0% | |
| ! | ACTGTGGCACTATCTTTTCA+AGG | + | chr2_1:79249775-79249794 | Msa0227930:CDS | 40.0% |
| CGTTGAAGATAGCTGCAAAA+AGG | - | chr2_1:79249924-79249943 | None:intergenic | 40.0% | |
| TCAAGTACTATACTCCGTTG+AGG | - | chr2_1:79250114-79250133 | None:intergenic | 40.0% | |
| GCCGACGCTAAAATTTCAAT+AGG | + | chr2_1:79250309-79250328 | Msa0227930:intron | 40.0% | |
| !! | ATAATTTGGTGCAACACAGG+AGG | + | chr2_1:79250520-79250539 | Msa0227930:intron | 40.0% |
| !! | TAATTTGGTGCAACACAGGA+GGG | + | chr2_1:79250521-79250540 | Msa0227930:intron | 40.0% |
| !! | TCTAGCTGTTTCTTCTGCTA+AGG | - | chr2_1:79250580-79250599 | None:intergenic | 40.0% |
| GGAATGGGAGTTAACAACAT+TGG | + | chr2_1:79250636-79250655 | Msa0227930:CDS | 40.0% | |
| TGTTGTGAGCTATACAAGGA+AGG | - | chr2_1:79251035-79251054 | None:intergenic | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | - | chr2_1:79251039-79251058 | None:intergenic | 40.0% |
| ATCTCAAACCTAAGCTTCCA+AGG | - | chr2_1:79251160-79251179 | None:intergenic | 40.0% | |
| GTACTTGCAACAAGTGATCT+TGG | + | chr2_1:79251239-79251258 | Msa0227930:CDS | 40.0% | |
| ! | GGACAAACTAGGGATTTTCT+TGG | + | chr2_1:79251347-79251366 | Msa0227930:CDS | 40.0% |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | + | chr2_1:79251353-79251372 | Msa0227930:CDS | 40.0% |
| GATTGATGAACTGTGGCAAA+TGG | - | chr2_1:79251388-79251407 | None:intergenic | 40.0% | |
| TGCCACAGTTCATCAATCAA+CGG | + | chr2_1:79251390-79251409 | Msa0227930:CDS | 40.0% | |
| ! | ATCCGTTGATTGATGAACTG+TGG | - | chr2_1:79251395-79251414 | None:intergenic | 40.0% |
| ACAGTTCATCAATCAACGGA+TGG | + | chr2_1:79251394-79251413 | Msa0227930:CDS | 40.0% | |
| AATCTTCAACTTCATCGACG+TGG | + | chr2_1:79249497-79249516 | Msa0227930:CDS | 40.0% | |
| TTGTGAACACATGTCTTCTC+TGG | - | chr2_1:79249591-79249610 | None:intergenic | 40.0% | |
| GTGTTCACAATCATCCTTCA+AGG | + | chr2_1:79249601-79249620 | Msa0227930:CDS | 40.0% | |
| AATCATCCTTCAAGGGCTTT+GGG | + | chr2_1:79249609-79249628 | Msa0227930:CDS | 40.0% | |
| ! | AAGCACTTTTGTAGGAAGCA+CGG | + | chr2_1:79249651-79249670 | Msa0227930:CDS | 40.0% |
| AAAGCTCACTCAAAGACTTG+TGG | + | chr2_1:79249732-79249751 | Msa0227930:CDS | 40.0% | |
| ! | ACTGTGGCACTATCTTTTCA+AGG | + | chr2_1:79249775-79249794 | Msa0227930:CDS | 40.0% |
| CGTTGAAGATAGCTGCAAAA+AGG | - | chr2_1:79249924-79249943 | None:intergenic | 40.0% | |
| TCAAGTACTATACTCCGTTG+AGG | - | chr2_1:79250114-79250133 | None:intergenic | 40.0% | |
| GCCGACGCTAAAATTTCAAT+AGG | + | chr2_1:79250309-79250328 | Msa0227930:intron | 40.0% | |
| !! | ATAATTTGGTGCAACACAGG+AGG | + | chr2_1:79250520-79250539 | Msa0227930:intron | 40.0% |
| !! | TAATTTGGTGCAACACAGGA+GGG | + | chr2_1:79250521-79250540 | Msa0227930:intron | 40.0% |
| !! | TCTAGCTGTTTCTTCTGCTA+AGG | - | chr2_1:79250580-79250599 | None:intergenic | 40.0% |
| GGAATGGGAGTTAACAACAT+TGG | + | chr2_1:79250636-79250655 | Msa0227930:CDS | 40.0% | |
| TGTTGTGAGCTATACAAGGA+AGG | - | chr2_1:79251035-79251054 | None:intergenic | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | - | chr2_1:79251039-79251058 | None:intergenic | 40.0% |
| ATCTCAAACCTAAGCTTCCA+AGG | - | chr2_1:79251160-79251179 | None:intergenic | 40.0% | |
| GTACTTGCAACAAGTGATCT+TGG | + | chr2_1:79251239-79251258 | Msa0227930:CDS | 40.0% | |
| ! | GGACAAACTAGGGATTTTCT+TGG | + | chr2_1:79251347-79251366 | Msa0227930:CDS | 40.0% |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | + | chr2_1:79251353-79251372 | Msa0227930:CDS | 40.0% |
| GATTGATGAACTGTGGCAAA+TGG | - | chr2_1:79251388-79251407 | None:intergenic | 40.0% | |
| TGCCACAGTTCATCAATCAA+CGG | + | chr2_1:79251390-79251409 | Msa0227930:CDS | 40.0% | |
| ! | ATCCGTTGATTGATGAACTG+TGG | - | chr2_1:79251395-79251414 | None:intergenic | 40.0% |
| ACAGTTCATCAATCAACGGA+TGG | + | chr2_1:79251394-79251413 | Msa0227930:CDS | 40.0% | |
| CAATCATCCTTCAAGGGCTT+TGG | + | chr2_1:79249608-79249627 | Msa0227930:CDS | 45.0% | |
| !! | GGATAGCTTTGTCACTCACA+GGG | + | chr2_1:79250542-79250561 | Msa0227930:CDS | 45.0% |
| TGTTGCTGACATGTTTGCAG+AGG | - | chr2_1:79251084-79251103 | None:intergenic | 45.0% | |
| TCAGCAGAGAGCTACATTTC+AGG | + | chr2_1:79251263-79251282 | Msa0227930:CDS | 45.0% | |
| !! | TGCAGAATGAAGAGAGCGTT+TGG | + | chr2_1:79251324-79251343 | Msa0227930:CDS | 45.0% |
| !! | GCAGAATGAAGAGAGCGTTT+GGG | + | chr2_1:79251325-79251344 | Msa0227930:CDS | 45.0% |
| !! | CAGAATGAAGAGAGCGTTTG+GGG | + | chr2_1:79251326-79251345 | Msa0227930:CDS | 45.0% |
| !!! | AGGGATTTTCTTGGTGTTGG+TGG | + | chr2_1:79251356-79251375 | Msa0227930:CDS | 45.0% |
| CAATCATCCTTCAAGGGCTT+TGG | + | chr2_1:79249608-79249627 | Msa0227930:CDS | 45.0% | |
| !! | GGATAGCTTTGTCACTCACA+GGG | + | chr2_1:79250542-79250561 | Msa0227930:CDS | 45.0% |
| TGTTGCTGACATGTTTGCAG+AGG | - | chr2_1:79251084-79251103 | None:intergenic | 45.0% | |
| TCAGCAGAGAGCTACATTTC+AGG | + | chr2_1:79251263-79251282 | Msa0227930:CDS | 45.0% | |
| !! | TGCAGAATGAAGAGAGCGTT+TGG | + | chr2_1:79251324-79251343 | Msa0227930:CDS | 45.0% |
| !! | GCAGAATGAAGAGAGCGTTT+GGG | + | chr2_1:79251325-79251344 | Msa0227930:CDS | 45.0% |
| !! | CAGAATGAAGAGAGCGTTTG+GGG | + | chr2_1:79251326-79251345 | Msa0227930:CDS | 45.0% |
| !!! | AGGGATTTTCTTGGTGTTGG+TGG | + | chr2_1:79251356-79251375 | Msa0227930:CDS | 45.0% |
| GACGTGGACATAACCTTCCT+TGG | + | chr2_1:79249513-79249532 | Msa0227930:CDS | 50.0% | |
| AAGTCTCCCAAAGCCCTTGA+AGG | - | chr2_1:79249618-79249637 | None:intergenic | 50.0% | |
| !! | AGGGCTTTGGGAGACTTAAC+TGG | + | chr2_1:79249621-79249640 | Msa0227930:CDS | 50.0% |
| !! | GGGCTTTGGGAGACTTAACT+GGG | + | chr2_1:79249622-79249641 | Msa0227930:CDS | 50.0% |
| !! | GGGATAGCTTTGTCACTCAC+AGG | + | chr2_1:79250541-79250560 | Msa0227930:CDS | 50.0% |
| CATTGCTCCTGTGCTTGTAG+CGG | - | chr2_1:79250862-79250881 | None:intergenic | 50.0% | |
| TGCATGCGACGTCGTTTCAT+GGG | - | chr2_1:79251308-79251327 | None:intergenic | 50.0% | |
| ! | AGAGCGTTTGGGGACAAACT+AGG | + | chr2_1:79251336-79251355 | Msa0227930:CDS | 50.0% |
| GAGCGTTTGGGGACAAACTA+GGG | + | chr2_1:79251337-79251356 | Msa0227930:CDS | 50.0% | |
| GACGTGGACATAACCTTCCT+TGG | + | chr2_1:79249513-79249532 | Msa0227930:CDS | 50.0% | |
| AAGTCTCCCAAAGCCCTTGA+AGG | - | chr2_1:79249618-79249637 | None:intergenic | 50.0% | |
| !! | AGGGCTTTGGGAGACTTAAC+TGG | + | chr2_1:79249621-79249640 | Msa0227930:CDS | 50.0% |
| !! | GGGCTTTGGGAGACTTAACT+GGG | + | chr2_1:79249622-79249641 | Msa0227930:CDS | 50.0% |
| !! | GGGATAGCTTTGTCACTCAC+AGG | + | chr2_1:79250541-79250560 | Msa0227930:CDS | 50.0% |
| CATTGCTCCTGTGCTTGTAG+CGG | - | chr2_1:79250862-79250881 | None:intergenic | 50.0% | |
| TGCATGCGACGTCGTTTCAT+GGG | - | chr2_1:79251308-79251327 | None:intergenic | 50.0% | |
| ! | AGAGCGTTTGGGGACAAACT+AGG | + | chr2_1:79251336-79251355 | Msa0227930:CDS | 50.0% |
| GAGCGTTTGGGGACAAACTA+GGG | + | chr2_1:79251337-79251356 | Msa0227930:CDS | 50.0% | |
| ! | GGAAGCACGGTGAGAAGAAG+TGG | + | chr2_1:79249664-79249683 | Msa0227930:CDS | 55.0% |
| ATGCGACGTCGTTTCATGGG+GGG | - | chr2_1:79251305-79251324 | None:intergenic | 55.0% | |
| CATGCGACGTCGTTTCATGG+GGG | - | chr2_1:79251306-79251325 | None:intergenic | 55.0% | |
| GCATGCGACGTCGTTTCATG+GGG | - | chr2_1:79251307-79251326 | None:intergenic | 55.0% | |
| CTGCATGCGACGTCGTTTCA+TGG | - | chr2_1:79251309-79251328 | None:intergenic | 55.0% | |
| ! | GGAAGCACGGTGAGAAGAAG+TGG | + | chr2_1:79249664-79249683 | Msa0227930:CDS | 55.0% |
| ATGCGACGTCGTTTCATGGG+GGG | - | chr2_1:79251305-79251324 | None:intergenic | 55.0% | |
| CATGCGACGTCGTTTCATGG+GGG | - | chr2_1:79251306-79251325 | None:intergenic | 55.0% | |
| GCATGCGACGTCGTTTCATG+GGG | - | chr2_1:79251307-79251326 | None:intergenic | 55.0% | |
| CTGCATGCGACGTCGTTTCA+TGG | - | chr2_1:79251309-79251328 | None:intergenic | 55.0% | |
| CTTGGGTCCGCTACAAGCAC+AGG | + | chr2_1:79250852-79250871 | Msa0227930:CDS | 60.0% | |
| CTTGGGTCCGCTACAAGCAC+AGG | + | chr2_1:79250852-79250871 | Msa0227930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79249440 | 79251427 | 79249440 | ID=Msa0227930;Name=Msa0227930 |
| chr2_1 | mRNA | 79249440 | 79251427 | 79249440 | ID=Msa0227930-mRNA-1;Parent=Msa0227930;Name=Msa0227930-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0.5|0|1|0.5|0.66|3|0|410 |
| chr2_1 | exon | 79249440 | 79249555 | 79249440 | ID=Msa0227930-mRNA-1:exon:24105;Parent=Msa0227930-mRNA-1 |
| chr2_1 | exon | 79249569 | 79249796 | 79249569 | ID=Msa0227930-mRNA-1:exon:24106;Parent=Msa0227930-mRNA-1 |
| chr2_1 | exon | 79250539 | 79251427 | 79250539 | ID=Msa0227930-mRNA-1:exon:24107;Parent=Msa0227930-mRNA-1 |
| chr2_1 | CDS | 79249440 | 79249555 | 79249440 | ID=Msa0227930-mRNA-1:cds;Parent=Msa0227930-mRNA-1 |
| chr2_1 | CDS | 79249569 | 79249796 | 79249569 | ID=Msa0227930-mRNA-1:cds;Parent=Msa0227930-mRNA-1 |
| chr2_1 | CDS | 79250539 | 79251427 | 79250539 | ID=Msa0227930-mRNA-1:cds;Parent=Msa0227930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
