Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300160 | XP_024633339.2 | 91.063 | 414 | 22 | 1 | 1 | 414 | 51 | 449 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300160 | sp|Q9ZWA6|IDD3_ARATH | 49.661 | 443 | 163 | 13 | 1 | 398 | 65 | 492 | 7.91e-118 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300160 | A0A072VBM1 | 90.821 | 414 | 23 | 1 | 1 | 414 | 31 | 429 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0300160 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220850 | Msa0300160 | 0.964892 | 6.662111e-124 | -8.615850e-47 |
| Msa0220940 | Msa0300160 | 0.944537 | 1.623728e-103 | -8.615850e-47 |
| Msa0227930 | Msa0300160 | 0.965747 | 5.242608e-125 | -8.615850e-47 |
| Msa0262390 | Msa0300160 | 0.889226 | 2.927462e-73 | -8.615850e-47 |
| Msa0300160 | Msa0337520 | 0.969255 | 7.442372e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300160 | MtrunA17_Chr4g0040571 | 64.138 | 435 | 108 | 19 | 1 | 398 | 63 | 486 | 1.52e-166 | 476 |
| Msa0300160 | MtrunA17_Chr2g0324981 | 86.260 | 262 | 21 | 1 | 153 | 414 | 1 | 247 | 6.87e-150 | 424 |
| Msa0300160 | MtrunA17_Chr4g0029521 | 49.080 | 326 | 121 | 6 | 1 | 321 | 62 | 347 | 7.19e-98 | 301 |
| Msa0300160 | MtrunA17_Chr1g0181381 | 43.478 | 460 | 177 | 15 | 1 | 411 | 62 | 487 | 3.15e-97 | 299 |
| Msa0300160 | MtrunA17_Chr7g0268961 | 50.617 | 324 | 110 | 6 | 1 | 323 | 46 | 320 | 5.21e-96 | 296 |
| Msa0300160 | MtrunA17_Chr2g0330171 | 89.209 | 139 | 15 | 0 | 1 | 139 | 70 | 208 | 1.22e-93 | 289 |
| Msa0300160 | MtrunA17_Chr1g0162971 | 49.231 | 325 | 134 | 7 | 1 | 318 | 65 | 365 | 3.09e-93 | 287 |
| Msa0300160 | MtrunA17_Chr8g0342421 | 89.928 | 139 | 14 | 0 | 1 | 139 | 86 | 224 | 6.78e-93 | 289 |
| Msa0300160 | MtrunA17_Chr7g0263941 | 64.390 | 205 | 66 | 2 | 1 | 205 | 58 | 255 | 1.46e-90 | 279 |
| Msa0300160 | MtrunA17_Chr1g0210821 | 48.397 | 343 | 154 | 7 | 1 | 321 | 68 | 409 | 9.06e-90 | 282 |
| Msa0300160 | MtrunA17_Chr1g0185121 | 50.156 | 321 | 104 | 8 | 1 | 320 | 64 | 329 | 1.43e-89 | 278 |
| Msa0300160 | MtrunA17_Chr1g0163001 | 84.892 | 139 | 21 | 0 | 1 | 139 | 67 | 205 | 1.76e-88 | 278 |
| Msa0300160 | MtrunA17_Chr1g0199101 | 84.058 | 138 | 22 | 0 | 1 | 138 | 71 | 208 | 4.21e-88 | 277 |
| Msa0300160 | MtrunA17_Chr2g0324991 | 100.000 | 118 | 0 | 0 | 1 | 118 | 16 | 133 | 3.01e-87 | 261 |
| Msa0300160 | MtrunA17_Chr1g0151351 | 81.818 | 143 | 25 | 1 | 1 | 142 | 65 | 207 | 7.73e-85 | 266 |
| Msa0300160 | MtrunA17_Chr2g0326381 | 69.591 | 171 | 42 | 3 | 1 | 170 | 56 | 217 | 4.16e-84 | 263 |
| Msa0300160 | MtrunA17_Chr3g0141431 | 76.866 | 134 | 30 | 1 | 1 | 133 | 46 | 179 | 1.38e-77 | 246 |
| Msa0300160 | MtrunA17_Chr6g0479921 | 62.879 | 132 | 48 | 1 | 1 | 131 | 53 | 184 | 1.55e-57 | 195 |
| Msa0300160 | MtrunA17_Chr8g0375521 | 61.364 | 132 | 49 | 2 | 1 | 130 | 51 | 182 | 2.02e-55 | 188 |
| Msa0300160 | MtrunA17_Chr1g0200421 | 34.752 | 141 | 80 | 3 | 1 | 129 | 246 | 386 | 5.22e-20 | 92.0 |
| Msa0300160 | MtrunA17_Chr3g0123941 | 35.036 | 137 | 81 | 3 | 1 | 129 | 132 | 268 | 1.63e-19 | 89.0 |
| Msa0300160 | MtrunA17_Chr2g0320341 | 35.000 | 140 | 77 | 3 | 1 | 126 | 239 | 378 | 2.59e-19 | 89.4 |
| Msa0300160 | MtrunA17_Chr4g0053341 | 36.957 | 138 | 77 | 5 | 1 | 129 | 82 | 218 | 5.35e-19 | 85.5 |
| Msa0300160 | MtrunA17_Chr5g0422571 | 36.810 | 163 | 87 | 8 | 1 | 152 | 109 | 266 | 6.25e-19 | 86.7 |
| Msa0300160 | MtrunA17_Chr8g0352011 | 36.232 | 138 | 78 | 5 | 1 | 129 | 174 | 310 | 6.79e-18 | 84.3 |
| Msa0300160 | MtrunA17_Chr8g0382121 | 36.496 | 137 | 76 | 5 | 1 | 126 | 120 | 256 | 7.06e-18 | 84.0 |
| Msa0300160 | MtrunA17_Chr7g0258011 | 33.766 | 154 | 82 | 7 | 1 | 136 | 184 | 335 | 2.87e-17 | 82.4 |
| Msa0300160 | MtrunA17_Chr1g0173841 | 34.783 | 138 | 80 | 5 | 1 | 129 | 223 | 359 | 1.10e-16 | 81.3 |
| Msa0300160 | MtrunA17_Chr2g0321291 | 36.567 | 134 | 75 | 5 | 5 | 129 | 145 | 277 | 1.46e-16 | 80.1 |
| Msa0300160 | MtrunA17_Chr1g0198651 | 33.557 | 149 | 86 | 5 | 1 | 137 | 110 | 257 | 1.51e-16 | 79.7 |
| Msa0300160 | MtrunA17_Chr2g0328921 | 34.058 | 138 | 81 | 5 | 1 | 129 | 146 | 282 | 1.56e-16 | 80.1 |
| Msa0300160 | MtrunA17_Chr4g0026521 | 35.821 | 134 | 76 | 5 | 5 | 129 | 130 | 262 | 1.24e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300160 | AT1G03840.2 | 49.661 | 443 | 163 | 13 | 1 | 398 | 63 | 490 | 5.90e-119 | 355 |
| Msa0300160 | AT1G03840.1 | 49.661 | 443 | 163 | 13 | 1 | 398 | 65 | 492 | 8.04e-119 | 355 |
| Msa0300160 | AT5G44160.2 | 50.000 | 438 | 133 | 14 | 1 | 398 | 22 | 413 | 5.62e-117 | 348 |
| Msa0300160 | AT5G44160.1 | 50.000 | 438 | 133 | 14 | 1 | 398 | 61 | 452 | 9.19e-117 | 349 |
| Msa0300160 | AT2G02080.6 | 46.705 | 349 | 140 | 10 | 1 | 327 | 1 | 325 | 3.22e-92 | 285 |
| Msa0300160 | AT2G02080.2 | 46.705 | 349 | 140 | 10 | 1 | 327 | 1 | 325 | 3.22e-92 | 285 |
| Msa0300160 | AT5G66730.1 | 87.050 | 139 | 18 | 0 | 1 | 139 | 56 | 194 | 5.78e-92 | 286 |
| Msa0300160 | AT2G02080.1 | 46.991 | 349 | 139 | 10 | 1 | 327 | 78 | 402 | 6.43e-92 | 286 |
| Msa0300160 | AT2G02080.4 | 46.991 | 349 | 139 | 10 | 1 | 327 | 78 | 402 | 6.43e-92 | 286 |
| Msa0300160 | AT2G02080.5 | 46.991 | 349 | 139 | 10 | 1 | 327 | 78 | 402 | 6.43e-92 | 286 |
| Msa0300160 | AT2G02080.3 | 46.991 | 349 | 139 | 10 | 1 | 327 | 78 | 402 | 6.43e-92 | 286 |
| Msa0300160 | AT4G02670.2 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 8.05e-90 | 278 |
| Msa0300160 | AT4G02670.1 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 9.10e-90 | 277 |
| Msa0300160 | AT1G55110.3 | 85.714 | 140 | 19 | 1 | 1 | 139 | 87 | 226 | 4.14e-89 | 277 |
| Msa0300160 | AT1G55110.1 | 85.714 | 140 | 19 | 1 | 1 | 139 | 87 | 226 | 4.14e-89 | 277 |
| Msa0300160 | AT1G55110.2 | 85.714 | 140 | 19 | 1 | 1 | 139 | 87 | 226 | 4.14e-89 | 277 |
| Msa0300160 | AT3G45260.2 | 43.521 | 409 | 161 | 14 | 1 | 398 | 63 | 412 | 5.72e-89 | 277 |
| Msa0300160 | AT3G45260.1 | 43.521 | 409 | 161 | 14 | 1 | 398 | 63 | 412 | 5.72e-89 | 277 |
| Msa0300160 | AT3G13810.6 | 87.857 | 140 | 16 | 1 | 1 | 139 | 75 | 214 | 4.27e-88 | 276 |
| Msa0300160 | AT3G13810.4 | 87.857 | 140 | 16 | 1 | 1 | 139 | 94 | 233 | 5.69e-88 | 276 |
| Msa0300160 | AT3G13810.1 | 87.857 | 140 | 16 | 1 | 1 | 139 | 94 | 233 | 5.69e-88 | 276 |
| Msa0300160 | AT3G13810.5 | 87.857 | 140 | 16 | 1 | 1 | 139 | 89 | 228 | 5.91e-88 | 276 |
| Msa0300160 | AT3G13810.3 | 87.857 | 140 | 16 | 1 | 1 | 139 | 81 | 220 | 8.23e-88 | 275 |
| Msa0300160 | AT3G13810.2 | 87.857 | 140 | 16 | 1 | 1 | 139 | 95 | 234 | 1.17e-87 | 275 |
| Msa0300160 | AT2G02070.2 | 81.295 | 139 | 26 | 0 | 1 | 139 | 76 | 214 | 9.61e-87 | 276 |
| Msa0300160 | AT2G02070.1 | 81.295 | 139 | 26 | 0 | 1 | 139 | 76 | 214 | 9.61e-87 | 276 |
| Msa0300160 | AT1G14580.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 77 | 215 | 2.80e-86 | 270 |
| Msa0300160 | AT1G14580.2 | 80.576 | 139 | 27 | 0 | 1 | 139 | 77 | 215 | 2.80e-86 | 270 |
| Msa0300160 | AT1G14580.3 | 80.576 | 139 | 27 | 0 | 1 | 139 | 91 | 229 | 4.68e-86 | 270 |
| Msa0300160 | AT5G60470.1 | 75.177 | 141 | 34 | 1 | 1 | 140 | 59 | 199 | 9.82e-81 | 256 |
| Msa0300160 | AT5G60470.2 | 75.177 | 141 | 34 | 1 | 1 | 140 | 68 | 208 | 1.68e-80 | 255 |
| Msa0300160 | AT5G60470.3 | 75.177 | 141 | 34 | 1 | 1 | 140 | 64 | 204 | 1.80e-80 | 255 |
| Msa0300160 | AT1G68130.1 | 65.152 | 132 | 44 | 2 | 1 | 130 | 65 | 196 | 4.66e-58 | 196 |
| Msa0300160 | AT1G25250.1 | 63.910 | 133 | 45 | 2 | 1 | 130 | 34 | 166 | 3.20e-57 | 192 |
| Msa0300160 | AT1G25250.3 | 63.910 | 133 | 45 | 2 | 1 | 130 | 57 | 189 | 3.57e-57 | 192 |
| Msa0300160 | AT2G01940.1 | 62.687 | 134 | 48 | 2 | 1 | 132 | 68 | 201 | 1.27e-56 | 192 |
| Msa0300160 | AT2G01940.3 | 61.481 | 135 | 49 | 3 | 1 | 132 | 68 | 202 | 9.06e-53 | 182 |
| Msa0300160 | AT1G68130.2 | 64.545 | 110 | 37 | 2 | 23 | 130 | 1 | 110 | 6.21e-45 | 159 |
| Msa0300160 | AT1G25250.2 | 63.063 | 111 | 38 | 2 | 23 | 130 | 1 | 111 | 1.06e-43 | 155 |
| Msa0300160 | AT2G01940.2 | 62.500 | 112 | 40 | 2 | 23 | 132 | 1 | 112 | 1.34e-43 | 156 |
| Msa0300160 | AT5G22890.1 | 35.000 | 140 | 77 | 4 | 1 | 126 | 212 | 351 | 1.36e-19 | 90.1 |
| Msa0300160 | AT1G34370.2 | 34.965 | 143 | 79 | 3 | 1 | 129 | 239 | 381 | 3.35e-19 | 90.1 |
| Msa0300160 | AT1G34370.1 | 34.965 | 143 | 79 | 3 | 1 | 129 | 239 | 381 | 3.35e-19 | 90.1 |
| Msa0300160 | AT1G34370.3 | 34.965 | 143 | 79 | 3 | 1 | 129 | 29 | 171 | 3.46e-19 | 87.8 |
| Msa0300160 | AT1G13290.1 | 34.337 | 166 | 87 | 9 | 1 | 154 | 96 | 251 | 6.88e-18 | 84.3 |
| Msa0300160 | AT1G34790.1 | 35.507 | 138 | 79 | 5 | 1 | 129 | 140 | 276 | 1.05e-17 | 83.6 |
| Msa0300160 | AT3G20880.1 | 34.783 | 138 | 80 | 5 | 1 | 129 | 251 | 387 | 2.70e-17 | 83.6 |
| Msa0300160 | AT1G51220.1 | 33.333 | 138 | 82 | 5 | 1 | 129 | 173 | 309 | 6.08e-17 | 82.0 |
| Msa0300160 | AT1G08290.1 | 37.500 | 136 | 72 | 6 | 5 | 129 | 179 | 312 | 2.25e-16 | 80.1 |
| Msa0300160 | AT3G57670.1 | 33.813 | 139 | 80 | 6 | 1 | 129 | 212 | 348 | 3.23e-16 | 80.1 |
Find 70 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATCAGGTTTATCTCTT+TGG | 0.192108 | 2_3:+55545896 | Msa0300160:CDS |
| GAAGAAACAGCTAGAATAAA+TGG | 0.212216 | 2_3:+55545715 | Msa0300160:CDS |
| TGTATAGTGCAAATGAAAAT+TGG | 0.226846 | 2_3:+55546010 | Msa0300160:CDS |
| CAATCATCCTTCAAGGGCTT+TGG | 0.260521 | 2_3:+55544738 | Msa0300160:CDS |
| AATATAAACAACTCATTATT+AGG | 0.262088 | 2_3:+55545745 | Msa0300160:CDS |
| AGGGCTTTGGGAGACTTAAC+TGG | 0.275104 | 2_3:+55544751 | Msa0300160:CDS |
| CTCTTGACATCCATTATTAG+AGG | 0.287901 | 2_3:-55546052 | None:intergenic |
| AATAAATTCTCCTCTAATAA+TGG | 0.294626 | 2_3:+55546042 | Msa0300160:CDS |
| GATCTAGATGTTTGATTAGT+TGG | 0.313962 | 2_3:-55545880 | None:intergenic |
| TAACATCGATAATAATAATA+AGG | 0.320786 | 2_3:+55546110 | Msa0300160:CDS |
| CTGCATGCGACGTCGTTTCA+TGG | 0.334137 | 2_3:-55546436 | None:intergenic |
| TCGATGTTATTATTAACTAA+TGG | 0.340481 | 2_3:-55546096 | None:intergenic |
| AAAGAACAAGTAAAGAAATA+AGG | 0.347748 | 2_3:+55544677 | Msa0300160:CDS |
| TGCAGAATGAAGAGAGCGTT+TGG | 0.365539 | 2_3:+55546454 | Msa0300160:CDS |
| TCAGCAGAGAGCTACATTTC+AGG | 0.365625 | 2_3:+55546393 | Msa0300160:CDS |
| GCAAATGAAAATTGGGTGTT+TGG | 0.367718 | 2_3:+55546018 | Msa0300160:CDS |
| GTGTGTGAAATTTGTCTAAA+GGG | 0.373283 | 2_3:+55544589 | Msa0300160:CDS |
| TCATTATTCCTTGGAAGCTT+AGG | 0.378657 | 2_3:+55546279 | Msa0300160:CDS |
| TCTTGATTTGTGCATGAGAT+TGG | 0.386882 | 2_3:-55545856 | None:intergenic |
| AATCATCCTTCAAGGGCTTT+GGG | 0.387364 | 2_3:+55544739 | Msa0300160:CDS |
| GTACTTGCAACAAGTGATCT+TGG | 0.393658 | 2_3:+55546369 | Msa0300160:CDS |
| TTTGATGATGAGATTGTGAT+TGG | 0.412049 | 2_3:-55546185 | None:intergenic |
| GCAGAATGAAGAGAGCGTTT+GGG | 0.418512 | 2_3:+55546455 | Msa0300160:CDS |
| GACAAATTTCACACACGAAT+CGG | 0.419935 | 2_3:-55544582 | None:intergenic |
| CGTGTGTGAAATTTGTCTAA+AGG | 0.423777 | 2_3:+55544588 | Msa0300160:CDS |
| TCTAGCTGTTTCTTCTGCTA+AGG | 0.433712 | 2_3:-55545707 | None:intergenic |
| TGCATGCGACGTCGTTTCAT+GGG | 0.435103 | 2_3:-55546435 | None:intergenic |
| GTGTTCACAATCATCCTTCA+AGG | 0.445387 | 2_3:+55544731 | Msa0300160:CDS |
| TTTATGCTGTTCAATCGGAT+TGG | 0.446458 | 2_3:+55544839 | Msa0300160:CDS |
| TCAACTGAATCATTATTCCT+TGG | 0.446740 | 2_3:+55546270 | Msa0300160:CDS |
| AACAACTCATTATTAGGAAT+GGG | 0.451735 | 2_3:+55545751 | Msa0300160:CDS |
| AAGTCTCCCAAAGCCCTTGA+AGG | 0.467713 | 2_3:-55544745 | None:intergenic |
| TTGTGAACACATGTCTTCTC+TGG | 0.471074 | 2_3:-55544718 | None:intergenic |
| AAACAACTCATTATTAGGAA+TGG | 0.474295 | 2_3:+55545750 | Msa0300160:CDS |
| GTTCTTTGTTTCAGCTTCCA+AGG | 0.486730 | 2_3:-55544661 | None:intergenic |
| AGAGCGTTTGGGGACAAACT+AGG | 0.488786 | 2_3:+55546466 | Msa0300160:CDS |
| ATGCATGAGATTCATCAACT+TGG | 0.490859 | 2_3:+55545964 | Msa0300160:CDS |
| TACTTGCAACAAGTGATCTT+GGG | 0.493836 | 2_3:+55546370 | Msa0300160:CDS |
| GTATAGTGCAAATGAAAATT+GGG | 0.498164 | 2_3:+55546011 | Msa0300160:CDS |
| AATAGTCCAAGTCAAGATCA+TGG | 0.501314 | 2_3:+55546312 | Msa0300160:CDS |
| GGAAGCACGGTGAGAAGAAG+TGG | 0.504824 | 2_3:+55544794 | Msa0300160:CDS |
| GACGTGGACATAATCTTCCT+TGG | 0.510587 | 2_3:+55544644 | Msa0300160:CDS |
| GAGCGTTTGGGGACAAACTA+GGG | 0.510953 | 2_3:+55546467 | Msa0300160:CDS |
| TTATTCCCATGATCTTGACT+TGG | 0.518278 | 2_3:-55546318 | None:intergenic |
| GGGATAGCTTTGTCACTCAC+AGG | 0.519723 | 2_3:+55545671 | Msa0300160:CDS |
| ACTAATCAAACATCTAGATC+AGG | 0.520793 | 2_3:+55545883 | Msa0300160:CDS |
| AATTCTCTTGTCCCAAACAT+AGG | 0.523465 | 2_3:+55545808 | Msa0300160:CDS |
| CTTGGGTCCGCTACAAGCAC+AGG | 0.540913 | 2_3:+55545982 | Msa0300160:CDS |
| GATTGATGAACTGTGGCAAA+TGG | 0.542982 | 2_3:-55546515 | None:intergenic |
| ATCTCAAACCTAAGCTTCCA+AGG | 0.557018 | 2_3:-55546287 | None:intergenic |
| GCATGCGACGTCGTTTCATG+GGG | 0.563017 | 2_3:-55546434 | None:intergenic |
| TGCATGAGATTCATCAACTT+GGG | 0.577843 | 2_3:+55545965 | Msa0300160:CDS |
| ATAGTCCAAGTCAAGATCAT+GGG | 0.586895 | 2_3:+55546313 | Msa0300160:CDS |
| GGAATGGGAGTTAACAACAT+TGG | 0.588635 | 2_3:+55545766 | Msa0300160:CDS |
| TGCCACAGTTCATCAATCAA+CGG | 0.590617 | 2_3:+55546520 | Msa0300160:CDS |
| TGTTCACAATCATCCTTCAA+GGG | 0.591498 | 2_3:+55544732 | Msa0300160:CDS |
| GGGCTTTGGGAGACTTAACT+GGG | 0.593735 | 2_3:+55544752 | Msa0300160:CDS |
| CAGAATGAAGAGAGCGTTTG+GGG | 0.617026 | 2_3:+55546456 | Msa0300160:CDS |
| CATTGCTCCTGTGCTTGTAG+CGG | 0.619229 | 2_3:-55545989 | None:intergenic |
| ACAGTTCATCAATCAACGGA+TGG | 0.619902 | 2_3:+55546524 | Msa0300160:CDS |
| ATGCGACGTCGTTTCATGGG+GGG | 0.625847 | 2_3:-55546432 | None:intergenic |
| TGTTGCTGACATGTTTGCAG+AGG | 0.649923 | 2_3:-55546211 | None:intergenic |
| CATGCGACGTCGTTTCATGG+GGG | 0.652534 | 2_3:-55546433 | None:intergenic |
| TTGGTGTTGTGAGCTATACA+AGG | 0.662064 | 2_3:-55546166 | None:intergenic |
| AAAGCTCACTCAAAGACTTG+TGG | 0.665203 | 2_3:+55544862 | Msa0300160:CDS |
| TGTTGTGAGCTATACAAGGA+AGG | 0.666542 | 2_3:-55546162 | None:intergenic |
| GGATAGCTTTGTCACTCACA+GGG | 0.679845 | 2_3:+55545672 | Msa0300160:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.689229 | 2_3:+55544889 | Msa0300160:CDS |
| AATCTTCAACTTCATCGACG+TGG | 0.715188 | 2_3:+55544628 | Msa0300160:CDS |
| ATCCGTTGATTGATGAACTG+TGG | 0.722662 | 2_3:-55546522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATGGAATAAAATAAAA+GGG | + | chr2_3:55545210-55545229 | Msa0300160:intron | 10.0% |
| !! | ATCAACAATAAATAAAAAAT+GGG | - | chr2_3:55545619-55545638 | None:intergenic | 10.0% |
| !! | AATCAACAATAAATAAAAAA+TGG | - | chr2_3:55545620-55545639 | None:intergenic | 10.0% |
| !! | TTATATGGAATAAAATAAAA+GGG | + | chr2_3:55545210-55545229 | Msa0300160:intron | 10.0% |
| !! | ATCAACAATAAATAAAAAAT+GGG | - | chr2_3:55545619-55545638 | None:intergenic | 10.0% |
| !! | AATCAACAATAAATAAAAAA+TGG | - | chr2_3:55545620-55545639 | None:intergenic | 10.0% |
| !! | AAAAAGGTAATAAACTTAAA+AGG | - | chr2_3:55545038-55545057 | None:intergenic | 15.0% |
| !! | CTTATATGGAATAAAATAAA+AGG | + | chr2_3:55545209-55545228 | Msa0300160:intron | 15.0% |
| !!! | TTGTTTATAATTTAGAATAG+AGG | + | chr2_3:55545535-55545554 | Msa0300160:intron | 15.0% |
| !!! | TGTTTATAATTTAGAATAGA+GGG | + | chr2_3:55545536-55545555 | Msa0300160:intron | 15.0% |
| !! | GATTACTTATCAATATAATT+TGG | + | chr2_3:55545636-55545655 | Msa0300160:intron | 15.0% |
| !! | AATATAAACAACTCATTATT+AGG | + | chr2_3:55545745-55545764 | Msa0300160:CDS | 15.0% |
| !! | TAACATCGATAATAATAATA+AGG | + | chr2_3:55546110-55546129 | Msa0300160:CDS | 15.0% |
| !! | AAAAAGGTAATAAACTTAAA+AGG | - | chr2_3:55545038-55545057 | None:intergenic | 15.0% |
| !! | CTTATATGGAATAAAATAAA+AGG | + | chr2_3:55545209-55545228 | Msa0300160:intron | 15.0% |
| !!! | TTGTTTATAATTTAGAATAG+AGG | + | chr2_3:55545535-55545554 | Msa0300160:intron | 15.0% |
| !!! | TGTTTATAATTTAGAATAGA+GGG | + | chr2_3:55545536-55545555 | Msa0300160:intron | 15.0% |
| !! | GATTACTTATCAATATAATT+TGG | + | chr2_3:55545636-55545655 | Msa0300160:intron | 15.0% |
| !! | AATATAAACAACTCATTATT+AGG | + | chr2_3:55545745-55545764 | Msa0300160:CDS | 15.0% |
| !! | TAACATCGATAATAATAATA+AGG | + | chr2_3:55546110-55546129 | Msa0300160:CDS | 15.0% |
| !! | AAAGAACAAGTAAAGAAATA+AGG | + | chr2_3:55544677-55544696 | Msa0300160:CDS | 20.0% |
| !!! | AAAATTTTATGCTGTTCAAT+CGG | + | chr2_3:55544834-55544853 | Msa0300160:CDS | 20.0% |
| !! | AAATAATAATCACAAAGGAA+AGG | - | chr2_3:55545136-55545155 | None:intergenic | 20.0% |
| !! | AACAGAAATAATAATCACAA+AGG | - | chr2_3:55545141-55545160 | None:intergenic | 20.0% |
| !! | TAATTACTTTGACTAATTTG+AGG | + | chr2_3:55545162-55545181 | Msa0300160:intron | 20.0% |
| !! | AATTACTTTGACTAATTTGA+GGG | + | chr2_3:55545163-55545182 | Msa0300160:intron | 20.0% |
| !!! | AGTTTTTCTCTCTAAAATAA+CGG | + | chr2_3:55545301-55545320 | Msa0300160:intron | 20.0% |
| !! | AGAATTAGTATAACATAACT+AGG | - | chr2_3:55545584-55545603 | None:intergenic | 20.0% |
| !! | AATAAATTCTCCTCTAATAA+TGG | + | chr2_3:55546042-55546061 | Msa0300160:CDS | 20.0% |
| !! | TCGATGTTATTATTAACTAA+TGG | - | chr2_3:55546099-55546118 | None:intergenic | 20.0% |
| !! | AAAGAACAAGTAAAGAAATA+AGG | + | chr2_3:55544677-55544696 | Msa0300160:CDS | 20.0% |
| !!! | AAAATTTTATGCTGTTCAAT+CGG | + | chr2_3:55544834-55544853 | Msa0300160:CDS | 20.0% |
| !! | AAATAATAATCACAAAGGAA+AGG | - | chr2_3:55545136-55545155 | None:intergenic | 20.0% |
| !! | AACAGAAATAATAATCACAA+AGG | - | chr2_3:55545141-55545160 | None:intergenic | 20.0% |
| !! | TAATTACTTTGACTAATTTG+AGG | + | chr2_3:55545162-55545181 | Msa0300160:intron | 20.0% |
| !! | AATTACTTTGACTAATTTGA+GGG | + | chr2_3:55545163-55545182 | Msa0300160:intron | 20.0% |
| !!! | AGTTTTTCTCTCTAAAATAA+CGG | + | chr2_3:55545301-55545320 | Msa0300160:intron | 20.0% |
| !! | AGAATTAGTATAACATAACT+AGG | - | chr2_3:55545584-55545603 | None:intergenic | 20.0% |
| !! | AATAAATTCTCCTCTAATAA+TGG | + | chr2_3:55546042-55546061 | Msa0300160:CDS | 20.0% |
| !! | TCGATGTTATTATTAACTAA+TGG | - | chr2_3:55546099-55546118 | None:intergenic | 20.0% |
| ! | GTTATTAGCTACTAATAGTT+TGG | + | chr2_3:55545080-55545099 | Msa0300160:intron | 25.0% |
| !! | TGGAAAATAGAAGTCTTATA+TGG | + | chr2_3:55545195-55545214 | Msa0300160:intron | 25.0% |
| ! | CAAAAATGTACATTTACTTC+TGG | - | chr2_3:55545518-55545537 | None:intergenic | 25.0% |
| ! | TATAACATAACTAGGTTGTA+GGG | - | chr2_3:55545576-55545595 | None:intergenic | 25.0% |
| ! | AAACAACTCATTATTAGGAA+TGG | + | chr2_3:55545750-55545769 | Msa0300160:CDS | 25.0% |
| ! | AACAACTCATTATTAGGAAT+GGG | + | chr2_3:55545751-55545770 | Msa0300160:CDS | 25.0% |
| ! | AAAAATGAGTTCCTATGTTT+GGG | - | chr2_3:55545822-55545841 | None:intergenic | 25.0% |
| ! | TGTATAGTGCAAATGAAAAT+TGG | + | chr2_3:55546010-55546029 | Msa0300160:CDS | 25.0% |
| ! | GTATAGTGCAAATGAAAATT+GGG | + | chr2_3:55546011-55546030 | Msa0300160:CDS | 25.0% |
| !! | ATCATGGGAATAAATTTTGT+GGG | + | chr2_3:55546328-55546347 | Msa0300160:CDS | 25.0% |
| ! | GTTATTAGCTACTAATAGTT+TGG | + | chr2_3:55545080-55545099 | Msa0300160:intron | 25.0% |
| !! | TGGAAAATAGAAGTCTTATA+TGG | + | chr2_3:55545195-55545214 | Msa0300160:intron | 25.0% |
| ! | CAAAAATGTACATTTACTTC+TGG | - | chr2_3:55545518-55545537 | None:intergenic | 25.0% |
| ! | TATAACATAACTAGGTTGTA+GGG | - | chr2_3:55545576-55545595 | None:intergenic | 25.0% |
| ! | AAACAACTCATTATTAGGAA+TGG | + | chr2_3:55545750-55545769 | Msa0300160:CDS | 25.0% |
| ! | AACAACTCATTATTAGGAAT+GGG | + | chr2_3:55545751-55545770 | Msa0300160:CDS | 25.0% |
| ! | AAAAATGAGTTCCTATGTTT+GGG | - | chr2_3:55545822-55545841 | None:intergenic | 25.0% |
| ! | TGTATAGTGCAAATGAAAAT+TGG | + | chr2_3:55546010-55546029 | Msa0300160:CDS | 25.0% |
| ! | GTATAGTGCAAATGAAAATT+GGG | + | chr2_3:55546011-55546030 | Msa0300160:CDS | 25.0% |
| !! | ATCATGGGAATAAATTTTGT+GGG | + | chr2_3:55546328-55546347 | Msa0300160:CDS | 25.0% |
| GTGTGTGAAATTTGTCTAAA+GGG | + | chr2_3:55544589-55544608 | Msa0300160:CDS | 30.0% | |
| ! | TTTGTCTAAAGGGTTTTCAA+AGG | + | chr2_3:55544599-55544618 | Msa0300160:CDS | 30.0% |
| ! | TTGTCTAAAGGGTTTTCAAA+GGG | + | chr2_3:55544600-55544619 | Msa0300160:CDS | 30.0% |
| ! | GCTACTAATAGTTTGGATTT+TGG | + | chr2_3:55545087-55545106 | Msa0300160:intron | 30.0% |
| CCAAGAGAATTTATCCAATT+AGG | - | chr2_3:55545380-55545399 | None:intergenic | 30.0% | |
| CCTAATTGGATAAATTCTCT+TGG | + | chr2_3:55545377-55545396 | Msa0300160:intron | 30.0% | |
| GTATAACATAACTAGGTTGT+AGG | - | chr2_3:55545577-55545596 | None:intergenic | 30.0% | |
| !! | AATATAATTTGGTGCAACAC+AGG | + | chr2_3:55545647-55545666 | Msa0300160:intron | 30.0% |
| GAAGAAACAGCTAGAATAAA+TGG | + | chr2_3:55545715-55545734 | Msa0300160:CDS | 30.0% | |
| GAAAAATGAGTTCCTATGTT+TGG | - | chr2_3:55545823-55545842 | None:intergenic | 30.0% | |
| GATCTAGATGTTTGATTAGT+TGG | - | chr2_3:55545883-55545902 | None:intergenic | 30.0% | |
| ACTAATCAAACATCTAGATC+AGG | + | chr2_3:55545883-55545902 | Msa0300160:CDS | 30.0% | |
| !! | TTTGATGATGAGATTGTGAT+TGG | - | chr2_3:55546188-55546207 | None:intergenic | 30.0% |
| TCAACTGAATCATTATTCCT+TGG | + | chr2_3:55546270-55546289 | Msa0300160:CDS | 30.0% | |
| ! | GATCATGGGAATAAATTTTG+TGG | + | chr2_3:55546327-55546346 | Msa0300160:CDS | 30.0% |
| ! | TCATGGGAATAAATTTTGTG+GGG | + | chr2_3:55546329-55546348 | Msa0300160:CDS | 30.0% |
| ! | AATAAATTTTGTGGGGTGTA+TGG | + | chr2_3:55546336-55546355 | Msa0300160:CDS | 30.0% |
| GTGTGTGAAATTTGTCTAAA+GGG | + | chr2_3:55544589-55544608 | Msa0300160:CDS | 30.0% | |
| ! | TTTGTCTAAAGGGTTTTCAA+AGG | + | chr2_3:55544599-55544618 | Msa0300160:CDS | 30.0% |
| ! | TTGTCTAAAGGGTTTTCAAA+GGG | + | chr2_3:55544600-55544619 | Msa0300160:CDS | 30.0% |
| ! | GCTACTAATAGTTTGGATTT+TGG | + | chr2_3:55545087-55545106 | Msa0300160:intron | 30.0% |
| CCAAGAGAATTTATCCAATT+AGG | - | chr2_3:55545380-55545399 | None:intergenic | 30.0% | |
| CCTAATTGGATAAATTCTCT+TGG | + | chr2_3:55545377-55545396 | Msa0300160:intron | 30.0% | |
| GTATAACATAACTAGGTTGT+AGG | - | chr2_3:55545577-55545596 | None:intergenic | 30.0% | |
| !! | AATATAATTTGGTGCAACAC+AGG | + | chr2_3:55545647-55545666 | Msa0300160:intron | 30.0% |
| GAAGAAACAGCTAGAATAAA+TGG | + | chr2_3:55545715-55545734 | Msa0300160:CDS | 30.0% | |
| GAAAAATGAGTTCCTATGTT+TGG | - | chr2_3:55545823-55545842 | None:intergenic | 30.0% | |
| GATCTAGATGTTTGATTAGT+TGG | - | chr2_3:55545883-55545902 | None:intergenic | 30.0% | |
| ACTAATCAAACATCTAGATC+AGG | + | chr2_3:55545883-55545902 | Msa0300160:CDS | 30.0% | |
| !! | TTTGATGATGAGATTGTGAT+TGG | - | chr2_3:55546188-55546207 | None:intergenic | 30.0% |
| TCAACTGAATCATTATTCCT+TGG | + | chr2_3:55546270-55546289 | Msa0300160:CDS | 30.0% | |
| ! | GATCATGGGAATAAATTTTG+TGG | + | chr2_3:55546327-55546346 | Msa0300160:CDS | 30.0% |
| ! | TCATGGGAATAAATTTTGTG+GGG | + | chr2_3:55546329-55546348 | Msa0300160:CDS | 30.0% |
| ! | AATAAATTTTGTGGGGTGTA+TGG | + | chr2_3:55546336-55546355 | Msa0300160:CDS | 30.0% |
| GACAAATTTCACACACGAAT+CGG | - | chr2_3:55544585-55544604 | None:intergenic | 35.0% | |
| CGTGTGTGAAATTTGTCTAA+AGG | + | chr2_3:55544588-55544607 | Msa0300160:CDS | 35.0% | |
| TGTTCACAATCATCCTTCAA+GGG | + | chr2_3:55544732-55544751 | Msa0300160:CDS | 35.0% | |
| !!! | GGATAAAGAAGCACTTTTGT+AGG | + | chr2_3:55544773-55544792 | Msa0300160:CDS | 35.0% |
| TTTATGCTGTTCAATCGGAT+TGG | + | chr2_3:55544839-55544858 | Msa0300160:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | + | chr2_3:55544889-55544908 | Msa0300160:CDS | 35.0% | |
| !! | ACTTGTCTAGTGCTCTAAAA+TGG | + | chr2_3:55544995-55545014 | Msa0300160:intron | 35.0% |
| TAATTTGAGGGTTGAGATTG+TGG | + | chr2_3:55545175-55545194 | Msa0300160:intron | 35.0% | |
| AAAGGGACTTAAATCCTCAA+CGG | + | chr2_3:55545227-55545246 | Msa0300160:intron | 35.0% | |
| AAAGTAGAGTGAAGCCTAAT+TGG | + | chr2_3:55545363-55545382 | Msa0300160:intron | 35.0% | |
| !! | CCCTATTGAAATTTTAGCGT+CGG | - | chr2_3:55545443-55545462 | None:intergenic | 35.0% |
| CCGACGCTAAAATTTCAATA+GGG | + | chr2_3:55545440-55545459 | Msa0300160:intron | 35.0% | |
| CGACGCTAAAATTTCAATAG+GGG | + | chr2_3:55545441-55545460 | Msa0300160:intron | 35.0% | |
| AATTCTCTTGTCCCAAACAT+AGG | + | chr2_3:55545808-55545827 | Msa0300160:CDS | 35.0% | |
| !! | TCTTGATTTGTGCATGAGAT+TGG | - | chr2_3:55545859-55545878 | None:intergenic | 35.0% |
| CTAGATCAGGTTTATCTCTT+TGG | + | chr2_3:55545896-55545915 | Msa0300160:CDS | 35.0% | |
| ATGCATGAGATTCATCAACT+TGG | + | chr2_3:55545964-55545983 | Msa0300160:CDS | 35.0% | |
| TGCATGAGATTCATCAACTT+GGG | + | chr2_3:55545965-55545984 | Msa0300160:CDS | 35.0% | |
| GCAAATGAAAATTGGGTGTT+TGG | + | chr2_3:55546018-55546037 | Msa0300160:CDS | 35.0% | |
| CTCTTGACATCCATTATTAG+AGG | - | chr2_3:55546055-55546074 | None:intergenic | 35.0% | |
| TTGCAAAAAGCTGCTCAAAT+TGG | + | chr2_3:55546240-55546259 | Msa0300160:CDS | 35.0% | |
| TGCAAAAAGCTGCTCAAATT+GGG | + | chr2_3:55546241-55546260 | Msa0300160:CDS | 35.0% | |
| TCATTATTCCTTGGAAGCTT+AGG | + | chr2_3:55546279-55546298 | Msa0300160:CDS | 35.0% | |
| AATAGTCCAAGTCAAGATCA+TGG | + | chr2_3:55546312-55546331 | Msa0300160:CDS | 35.0% | |
| ATAGTCCAAGTCAAGATCAT+GGG | + | chr2_3:55546313-55546332 | Msa0300160:CDS | 35.0% | |
| TTATTCCCATGATCTTGACT+TGG | - | chr2_3:55546321-55546340 | None:intergenic | 35.0% | |
| TACTTGCAACAAGTGATCTT+GGG | + | chr2_3:55546370-55546389 | Msa0300160:CDS | 35.0% | |
| GACAAATTTCACACACGAAT+CGG | - | chr2_3:55544585-55544604 | None:intergenic | 35.0% | |
| CGTGTGTGAAATTTGTCTAA+AGG | + | chr2_3:55544588-55544607 | Msa0300160:CDS | 35.0% | |
| TGTTCACAATCATCCTTCAA+GGG | + | chr2_3:55544732-55544751 | Msa0300160:CDS | 35.0% | |
| !!! | GGATAAAGAAGCACTTTTGT+AGG | + | chr2_3:55544773-55544792 | Msa0300160:CDS | 35.0% |
| TTTATGCTGTTCAATCGGAT+TGG | + | chr2_3:55544839-55544858 | Msa0300160:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | + | chr2_3:55544889-55544908 | Msa0300160:CDS | 35.0% | |
| !! | ACTTGTCTAGTGCTCTAAAA+TGG | + | chr2_3:55544995-55545014 | Msa0300160:intron | 35.0% |
| TAATTTGAGGGTTGAGATTG+TGG | + | chr2_3:55545175-55545194 | Msa0300160:intron | 35.0% | |
| AAAGGGACTTAAATCCTCAA+CGG | + | chr2_3:55545227-55545246 | Msa0300160:intron | 35.0% | |
| AAAGTAGAGTGAAGCCTAAT+TGG | + | chr2_3:55545363-55545382 | Msa0300160:intron | 35.0% | |
| !! | CCCTATTGAAATTTTAGCGT+CGG | - | chr2_3:55545443-55545462 | None:intergenic | 35.0% |
| CCGACGCTAAAATTTCAATA+GGG | + | chr2_3:55545440-55545459 | Msa0300160:intron | 35.0% | |
| CGACGCTAAAATTTCAATAG+GGG | + | chr2_3:55545441-55545460 | Msa0300160:intron | 35.0% | |
| AATTCTCTTGTCCCAAACAT+AGG | + | chr2_3:55545808-55545827 | Msa0300160:CDS | 35.0% | |
| !! | TCTTGATTTGTGCATGAGAT+TGG | - | chr2_3:55545859-55545878 | None:intergenic | 35.0% |
| CTAGATCAGGTTTATCTCTT+TGG | + | chr2_3:55545896-55545915 | Msa0300160:CDS | 35.0% | |
| ATGCATGAGATTCATCAACT+TGG | + | chr2_3:55545964-55545983 | Msa0300160:CDS | 35.0% | |
| TGCATGAGATTCATCAACTT+GGG | + | chr2_3:55545965-55545984 | Msa0300160:CDS | 35.0% | |
| GCAAATGAAAATTGGGTGTT+TGG | + | chr2_3:55546018-55546037 | Msa0300160:CDS | 35.0% | |
| CTCTTGACATCCATTATTAG+AGG | - | chr2_3:55546055-55546074 | None:intergenic | 35.0% | |
| TTGCAAAAAGCTGCTCAAAT+TGG | + | chr2_3:55546240-55546259 | Msa0300160:CDS | 35.0% | |
| TGCAAAAAGCTGCTCAAATT+GGG | + | chr2_3:55546241-55546260 | Msa0300160:CDS | 35.0% | |
| TCATTATTCCTTGGAAGCTT+AGG | + | chr2_3:55546279-55546298 | Msa0300160:CDS | 35.0% | |
| AATAGTCCAAGTCAAGATCA+TGG | + | chr2_3:55546312-55546331 | Msa0300160:CDS | 35.0% | |
| ATAGTCCAAGTCAAGATCAT+GGG | + | chr2_3:55546313-55546332 | Msa0300160:CDS | 35.0% | |
| TTATTCCCATGATCTTGACT+TGG | - | chr2_3:55546321-55546340 | None:intergenic | 35.0% | |
| TACTTGCAACAAGTGATCTT+GGG | + | chr2_3:55546370-55546389 | Msa0300160:CDS | 35.0% | |
| AATCTTCAACTTCATCGACG+TGG | + | chr2_3:55544628-55544647 | Msa0300160:CDS | 40.0% | |
| ! | GTTCTTTGTTTCAGCTTCCA+AGG | - | chr2_3:55544664-55544683 | None:intergenic | 40.0% |
| TTGTGAACACATGTCTTCTC+TGG | - | chr2_3:55544721-55544740 | None:intergenic | 40.0% | |
| GTGTTCACAATCATCCTTCA+AGG | + | chr2_3:55544731-55544750 | Msa0300160:CDS | 40.0% | |
| AATCATCCTTCAAGGGCTTT+GGG | + | chr2_3:55544739-55544758 | Msa0300160:CDS | 40.0% | |
| ! | AAGCACTTTTGTAGGAAGCA+CGG | + | chr2_3:55544781-55544800 | Msa0300160:CDS | 40.0% |
| AAAGCTCACTCAAAGACTTG+TGG | + | chr2_3:55544862-55544881 | Msa0300160:CDS | 40.0% | |
| ! | ACTGTGGCACTATCTTTTCA+AGG | + | chr2_3:55544905-55544924 | Msa0300160:CDS | 40.0% |
| CGTTGAAGATAGCTGCAAAA+AGG | - | chr2_3:55545054-55545073 | None:intergenic | 40.0% | |
| TCAAGTACTATACTCCGTTG+AGG | - | chr2_3:55545244-55545263 | None:intergenic | 40.0% | |
| GCCGACGCTAAAATTTCAAT+AGG | + | chr2_3:55545439-55545458 | Msa0300160:intron | 40.0% | |
| !! | ATAATTTGGTGCAACACAGG+AGG | + | chr2_3:55545650-55545669 | Msa0300160:intron | 40.0% |
| !! | TAATTTGGTGCAACACAGGA+GGG | + | chr2_3:55545651-55545670 | Msa0300160:intron | 40.0% |
| !! | TCTAGCTGTTTCTTCTGCTA+AGG | - | chr2_3:55545710-55545729 | None:intergenic | 40.0% |
| GGAATGGGAGTTAACAACAT+TGG | + | chr2_3:55545766-55545785 | Msa0300160:CDS | 40.0% | |
| TGTTGTGAGCTATACAAGGA+AGG | - | chr2_3:55546165-55546184 | None:intergenic | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | - | chr2_3:55546169-55546188 | None:intergenic | 40.0% |
| ATCTCAAACCTAAGCTTCCA+AGG | - | chr2_3:55546290-55546309 | None:intergenic | 40.0% | |
| GTACTTGCAACAAGTGATCT+TGG | + | chr2_3:55546369-55546388 | Msa0300160:CDS | 40.0% | |
| ! | GGACAAACTAGGGATTTTCT+TGG | + | chr2_3:55546477-55546496 | Msa0300160:CDS | 40.0% |
| !! | ACTAGGGATTTTCTTGGTGT+CGG | + | chr2_3:55546483-55546502 | Msa0300160:CDS | 40.0% |
| GATTGATGAACTGTGGCAAA+TGG | - | chr2_3:55546518-55546537 | None:intergenic | 40.0% | |
| TGCCACAGTTCATCAATCAA+CGG | + | chr2_3:55546520-55546539 | Msa0300160:CDS | 40.0% | |
| ! | ATCCGTTGATTGATGAACTG+TGG | - | chr2_3:55546525-55546544 | None:intergenic | 40.0% |
| ACAGTTCATCAATCAACGGA+TGG | + | chr2_3:55546524-55546543 | Msa0300160:CDS | 40.0% | |
| AATCTTCAACTTCATCGACG+TGG | + | chr2_3:55544628-55544647 | Msa0300160:CDS | 40.0% | |
| ! | GTTCTTTGTTTCAGCTTCCA+AGG | - | chr2_3:55544664-55544683 | None:intergenic | 40.0% |
| TTGTGAACACATGTCTTCTC+TGG | - | chr2_3:55544721-55544740 | None:intergenic | 40.0% | |
| GTGTTCACAATCATCCTTCA+AGG | + | chr2_3:55544731-55544750 | Msa0300160:CDS | 40.0% | |
| AATCATCCTTCAAGGGCTTT+GGG | + | chr2_3:55544739-55544758 | Msa0300160:CDS | 40.0% | |
| ! | AAGCACTTTTGTAGGAAGCA+CGG | + | chr2_3:55544781-55544800 | Msa0300160:CDS | 40.0% |
| AAAGCTCACTCAAAGACTTG+TGG | + | chr2_3:55544862-55544881 | Msa0300160:CDS | 40.0% | |
| ! | ACTGTGGCACTATCTTTTCA+AGG | + | chr2_3:55544905-55544924 | Msa0300160:CDS | 40.0% |
| CGTTGAAGATAGCTGCAAAA+AGG | - | chr2_3:55545054-55545073 | None:intergenic | 40.0% | |
| TCAAGTACTATACTCCGTTG+AGG | - | chr2_3:55545244-55545263 | None:intergenic | 40.0% | |
| GCCGACGCTAAAATTTCAAT+AGG | + | chr2_3:55545439-55545458 | Msa0300160:intron | 40.0% | |
| !! | ATAATTTGGTGCAACACAGG+AGG | + | chr2_3:55545650-55545669 | Msa0300160:intron | 40.0% |
| !! | TAATTTGGTGCAACACAGGA+GGG | + | chr2_3:55545651-55545670 | Msa0300160:intron | 40.0% |
| !! | TCTAGCTGTTTCTTCTGCTA+AGG | - | chr2_3:55545710-55545729 | None:intergenic | 40.0% |
| GGAATGGGAGTTAACAACAT+TGG | + | chr2_3:55545766-55545785 | Msa0300160:CDS | 40.0% | |
| TGTTGTGAGCTATACAAGGA+AGG | - | chr2_3:55546165-55546184 | None:intergenic | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | - | chr2_3:55546169-55546188 | None:intergenic | 40.0% |
| ATCTCAAACCTAAGCTTCCA+AGG | - | chr2_3:55546290-55546309 | None:intergenic | 40.0% | |
| GTACTTGCAACAAGTGATCT+TGG | + | chr2_3:55546369-55546388 | Msa0300160:CDS | 40.0% | |
| ! | GGACAAACTAGGGATTTTCT+TGG | + | chr2_3:55546477-55546496 | Msa0300160:CDS | 40.0% |
| !! | ACTAGGGATTTTCTTGGTGT+CGG | + | chr2_3:55546483-55546502 | Msa0300160:CDS | 40.0% |
| GATTGATGAACTGTGGCAAA+TGG | - | chr2_3:55546518-55546537 | None:intergenic | 40.0% | |
| TGCCACAGTTCATCAATCAA+CGG | + | chr2_3:55546520-55546539 | Msa0300160:CDS | 40.0% | |
| ! | ATCCGTTGATTGATGAACTG+TGG | - | chr2_3:55546525-55546544 | None:intergenic | 40.0% |
| ACAGTTCATCAATCAACGGA+TGG | + | chr2_3:55546524-55546543 | Msa0300160:CDS | 40.0% | |
| GACGTGGACATAATCTTCCT+TGG | + | chr2_3:55544644-55544663 | Msa0300160:CDS | 45.0% | |
| CAATCATCCTTCAAGGGCTT+TGG | + | chr2_3:55544738-55544757 | Msa0300160:CDS | 45.0% | |
| !! | GGATAGCTTTGTCACTCACA+GGG | + | chr2_3:55545672-55545691 | Msa0300160:CDS | 45.0% |
| TGTTGCTGACATGTTTGCAG+AGG | - | chr2_3:55546214-55546233 | None:intergenic | 45.0% | |
| TCAGCAGAGAGCTACATTTC+AGG | + | chr2_3:55546393-55546412 | Msa0300160:CDS | 45.0% | |
| !! | TGCAGAATGAAGAGAGCGTT+TGG | + | chr2_3:55546454-55546473 | Msa0300160:CDS | 45.0% |
| !! | GCAGAATGAAGAGAGCGTTT+GGG | + | chr2_3:55546455-55546474 | Msa0300160:CDS | 45.0% |
| !! | CAGAATGAAGAGAGCGTTTG+GGG | + | chr2_3:55546456-55546475 | Msa0300160:CDS | 45.0% |
| GACGTGGACATAATCTTCCT+TGG | + | chr2_3:55544644-55544663 | Msa0300160:CDS | 45.0% | |
| CAATCATCCTTCAAGGGCTT+TGG | + | chr2_3:55544738-55544757 | Msa0300160:CDS | 45.0% | |
| !! | GGATAGCTTTGTCACTCACA+GGG | + | chr2_3:55545672-55545691 | Msa0300160:CDS | 45.0% |
| TGTTGCTGACATGTTTGCAG+AGG | - | chr2_3:55546214-55546233 | None:intergenic | 45.0% | |
| TCAGCAGAGAGCTACATTTC+AGG | + | chr2_3:55546393-55546412 | Msa0300160:CDS | 45.0% | |
| !! | TGCAGAATGAAGAGAGCGTT+TGG | + | chr2_3:55546454-55546473 | Msa0300160:CDS | 45.0% |
| !! | GCAGAATGAAGAGAGCGTTT+GGG | + | chr2_3:55546455-55546474 | Msa0300160:CDS | 45.0% |
| !! | CAGAATGAAGAGAGCGTTTG+GGG | + | chr2_3:55546456-55546475 | Msa0300160:CDS | 45.0% |
| AAGTCTCCCAAAGCCCTTGA+AGG | - | chr2_3:55544748-55544767 | None:intergenic | 50.0% | |
| !! | AGGGCTTTGGGAGACTTAAC+TGG | + | chr2_3:55544751-55544770 | Msa0300160:CDS | 50.0% |
| !! | GGGCTTTGGGAGACTTAACT+GGG | + | chr2_3:55544752-55544771 | Msa0300160:CDS | 50.0% |
| !! | GGGATAGCTTTGTCACTCAC+AGG | + | chr2_3:55545671-55545690 | Msa0300160:CDS | 50.0% |
| CATTGCTCCTGTGCTTGTAG+CGG | - | chr2_3:55545992-55546011 | None:intergenic | 50.0% | |
| TGCATGCGACGTCGTTTCAT+GGG | - | chr2_3:55546438-55546457 | None:intergenic | 50.0% | |
| ! | AGAGCGTTTGGGGACAAACT+AGG | + | chr2_3:55546466-55546485 | Msa0300160:CDS | 50.0% |
| GAGCGTTTGGGGACAAACTA+GGG | + | chr2_3:55546467-55546486 | Msa0300160:CDS | 50.0% | |
| !!! | AGGGATTTTCTTGGTGTCGG+TGG | + | chr2_3:55546486-55546505 | Msa0300160:CDS | 50.0% |
| AAGTCTCCCAAAGCCCTTGA+AGG | - | chr2_3:55544748-55544767 | None:intergenic | 50.0% | |
| !! | AGGGCTTTGGGAGACTTAAC+TGG | + | chr2_3:55544751-55544770 | Msa0300160:CDS | 50.0% |
| !! | GGGCTTTGGGAGACTTAACT+GGG | + | chr2_3:55544752-55544771 | Msa0300160:CDS | 50.0% |
| !! | GGGATAGCTTTGTCACTCAC+AGG | + | chr2_3:55545671-55545690 | Msa0300160:CDS | 50.0% |
| CATTGCTCCTGTGCTTGTAG+CGG | - | chr2_3:55545992-55546011 | None:intergenic | 50.0% | |
| TGCATGCGACGTCGTTTCAT+GGG | - | chr2_3:55546438-55546457 | None:intergenic | 50.0% | |
| ! | AGAGCGTTTGGGGACAAACT+AGG | + | chr2_3:55546466-55546485 | Msa0300160:CDS | 50.0% |
| GAGCGTTTGGGGACAAACTA+GGG | + | chr2_3:55546467-55546486 | Msa0300160:CDS | 50.0% | |
| !!! | AGGGATTTTCTTGGTGTCGG+TGG | + | chr2_3:55546486-55546505 | Msa0300160:CDS | 50.0% |
| ! | GGAAGCACGGTGAGAAGAAG+TGG | + | chr2_3:55544794-55544813 | Msa0300160:CDS | 55.0% |
| ATGCGACGTCGTTTCATGGG+GGG | - | chr2_3:55546435-55546454 | None:intergenic | 55.0% | |
| CATGCGACGTCGTTTCATGG+GGG | - | chr2_3:55546436-55546455 | None:intergenic | 55.0% | |
| GCATGCGACGTCGTTTCATG+GGG | - | chr2_3:55546437-55546456 | None:intergenic | 55.0% | |
| CTGCATGCGACGTCGTTTCA+TGG | - | chr2_3:55546439-55546458 | None:intergenic | 55.0% | |
| ! | GGAAGCACGGTGAGAAGAAG+TGG | + | chr2_3:55544794-55544813 | Msa0300160:CDS | 55.0% |
| ATGCGACGTCGTTTCATGGG+GGG | - | chr2_3:55546435-55546454 | None:intergenic | 55.0% | |
| CATGCGACGTCGTTTCATGG+GGG | - | chr2_3:55546436-55546455 | None:intergenic | 55.0% | |
| GCATGCGACGTCGTTTCATG+GGG | - | chr2_3:55546437-55546456 | None:intergenic | 55.0% | |
| CTGCATGCGACGTCGTTTCA+TGG | - | chr2_3:55546439-55546458 | None:intergenic | 55.0% | |
| CTTGGGTCCGCTACAAGCAC+AGG | + | chr2_3:55545982-55546001 | Msa0300160:CDS | 60.0% | |
| CTTGGGTCCGCTACAAGCAC+AGG | + | chr2_3:55545982-55546001 | Msa0300160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55544571 | 55546557 | 55544571 | ID=Msa0300160;Name=Msa0300160 |
| chr2_3 | mRNA | 55544571 | 55546557 | 55544571 | ID=Msa0300160-mRNA-1;Parent=Msa0300160;Name=Msa0300160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|414 |
| chr2_3 | exon | 55544571 | 55544926 | 55544571 | ID=Msa0300160-mRNA-1:exon:17756;Parent=Msa0300160-mRNA-1 |
| chr2_3 | exon | 55545669 | 55546557 | 55545669 | ID=Msa0300160-mRNA-1:exon:17757;Parent=Msa0300160-mRNA-1 |
| chr2_3 | CDS | 55544571 | 55544926 | 55544571 | ID=Msa0300160-mRNA-1:cds;Parent=Msa0300160-mRNA-1 |
| chr2_3 | CDS | 55545669 | 55546557 | 55545669 | ID=Msa0300160-mRNA-1:cds;Parent=Msa0300160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
