Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262390 | XP_024633339.2 | 91.367 | 417 | 16 | 3 | 1 | 415 | 51 | 449 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262390 | sp|Q9ZWA6|IDD3_ARATH | 49.661 | 443 | 164 | 13 | 1 | 399 | 65 | 492 | 2.90e-118 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262390 | A0A072VBM1 | 91.127 | 417 | 17 | 3 | 1 | 415 | 31 | 429 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0262390 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220850 | Msa0262390 | 0.925375 | 1.997771e-90 | -8.615850e-47 |
| Msa0220940 | Msa0262390 | 0.925831 | 1.075448e-90 | -8.615850e-47 |
| Msa0227930 | Msa0262390 | 0.904678 | 9.549944e-80 | -8.615850e-47 |
| Msa0262390 | Msa0300160 | 0.889226 | 2.927462e-73 | -8.615850e-47 |
| Msa0262390 | Msa0337520 | 0.934926 | 1.891978e-96 | -8.615850e-47 |
| Msa0262390 | Msa0943970 | 0.805240 | 1.468747e-49 | -8.615850e-47 |
| Msa0262390 | Msa1419690 | 0.804291 | 2.317736e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262390 | MtrunA17_Chr4g0040571 | 64.286 | 434 | 110 | 18 | 1 | 399 | 63 | 486 | 2.34e-166 | 476 |
| Msa0262390 | MtrunA17_Chr2g0324981 | 86.792 | 265 | 15 | 3 | 153 | 415 | 1 | 247 | 7.64e-149 | 422 |
| Msa0262390 | MtrunA17_Chr4g0029521 | 50.152 | 329 | 114 | 9 | 1 | 322 | 62 | 347 | 3.66e-97 | 299 |
| Msa0262390 | MtrunA17_Chr1g0181381 | 43.384 | 461 | 177 | 15 | 1 | 412 | 62 | 487 | 4.26e-97 | 299 |
| Msa0262390 | MtrunA17_Chr7g0268961 | 51.227 | 326 | 106 | 7 | 1 | 324 | 46 | 320 | 1.76e-96 | 297 |
| Msa0262390 | MtrunA17_Chr8g0373541 | 89.928 | 139 | 14 | 0 | 1 | 139 | 57 | 195 | 6.19e-94 | 291 |
| Msa0262390 | MtrunA17_Chr2g0330171 | 89.209 | 139 | 15 | 0 | 1 | 139 | 70 | 208 | 1.16e-93 | 289 |
| Msa0262390 | MtrunA17_Chr1g0162971 | 49.538 | 325 | 134 | 7 | 1 | 319 | 65 | 365 | 1.78e-93 | 288 |
| Msa0262390 | MtrunA17_Chr8g0342421 | 89.928 | 139 | 14 | 0 | 1 | 139 | 86 | 224 | 6.93e-93 | 289 |
| Msa0262390 | MtrunA17_Chr7g0263941 | 64.390 | 205 | 66 | 2 | 1 | 205 | 58 | 255 | 1.49e-90 | 279 |
| Msa0262390 | MtrunA17_Chr1g0185121 | 50.000 | 322 | 104 | 8 | 1 | 321 | 64 | 329 | 2.27e-89 | 278 |
| Msa0262390 | MtrunA17_Chr1g0163001 | 84.892 | 139 | 21 | 0 | 1 | 139 | 67 | 205 | 1.80e-88 | 278 |
| Msa0262390 | MtrunA17_Chr1g0210821 | 75.625 | 160 | 36 | 1 | 1 | 157 | 68 | 227 | 2.12e-88 | 279 |
| Msa0262390 | MtrunA17_Chr1g0199101 | 84.058 | 138 | 22 | 0 | 1 | 138 | 71 | 208 | 4.12e-88 | 277 |
| Msa0262390 | MtrunA17_Chr2g0324991 | 100.000 | 118 | 0 | 0 | 1 | 118 | 16 | 133 | 3.14e-87 | 261 |
| Msa0262390 | MtrunA17_Chr1g0151351 | 81.818 | 143 | 25 | 1 | 1 | 142 | 65 | 207 | 7.01e-85 | 266 |
| Msa0262390 | MtrunA17_Chr2g0326381 | 69.591 | 171 | 42 | 3 | 1 | 170 | 56 | 217 | 4.29e-84 | 263 |
| Msa0262390 | MtrunA17_Chr3g0141431 | 76.866 | 134 | 30 | 1 | 1 | 133 | 46 | 179 | 1.29e-77 | 246 |
| Msa0262390 | MtrunA17_Chr6g0479921 | 62.879 | 132 | 48 | 1 | 1 | 131 | 53 | 184 | 1.43e-57 | 196 |
| Msa0262390 | MtrunA17_Chr8g0375521 | 61.364 | 132 | 49 | 2 | 1 | 130 | 51 | 182 | 2.07e-55 | 188 |
| Msa0262390 | MtrunA17_Chr1g0200421 | 34.752 | 141 | 80 | 3 | 1 | 129 | 246 | 386 | 5.13e-20 | 92.0 |
| Msa0262390 | MtrunA17_Chr3g0123941 | 35.036 | 137 | 81 | 3 | 1 | 129 | 132 | 268 | 1.70e-19 | 89.0 |
| Msa0262390 | MtrunA17_Chr2g0320341 | 35.000 | 140 | 77 | 3 | 1 | 126 | 239 | 378 | 2.79e-19 | 89.0 |
| Msa0262390 | MtrunA17_Chr4g0053341 | 36.957 | 138 | 77 | 5 | 1 | 129 | 82 | 218 | 5.39e-19 | 85.5 |
| Msa0262390 | MtrunA17_Chr5g0422571 | 36.810 | 163 | 87 | 8 | 1 | 152 | 109 | 266 | 6.36e-19 | 86.7 |
| Msa0262390 | MtrunA17_Chr8g0382121 | 36.496 | 137 | 76 | 5 | 1 | 126 | 120 | 256 | 6.53e-18 | 84.0 |
| Msa0262390 | MtrunA17_Chr8g0352011 | 36.232 | 138 | 78 | 5 | 1 | 129 | 174 | 310 | 7.11e-18 | 84.3 |
| Msa0262390 | MtrunA17_Chr7g0258011 | 33.766 | 154 | 82 | 7 | 1 | 136 | 184 | 335 | 2.86e-17 | 82.4 |
| Msa0262390 | MtrunA17_Chr1g0173841 | 34.783 | 138 | 80 | 5 | 1 | 129 | 223 | 359 | 1.09e-16 | 81.3 |
| Msa0262390 | MtrunA17_Chr2g0321291 | 36.567 | 134 | 75 | 5 | 5 | 129 | 145 | 277 | 1.43e-16 | 80.1 |
| Msa0262390 | MtrunA17_Chr1g0198651 | 33.557 | 149 | 86 | 5 | 1 | 137 | 110 | 257 | 1.60e-16 | 79.7 |
| Msa0262390 | MtrunA17_Chr2g0328921 | 34.058 | 138 | 81 | 5 | 1 | 129 | 146 | 282 | 1.64e-16 | 80.1 |
| Msa0262390 | MtrunA17_Chr4g0026521 | 35.821 | 134 | 76 | 5 | 5 | 129 | 130 | 262 | 1.18e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262390 | AT1G03840.2 | 49.661 | 443 | 164 | 13 | 1 | 399 | 63 | 490 | 2.62e-119 | 357 |
| Msa0262390 | AT1G03840.1 | 49.661 | 443 | 164 | 13 | 1 | 399 | 65 | 492 | 2.94e-119 | 357 |
| Msa0262390 | AT5G44160.2 | 50.228 | 438 | 133 | 14 | 1 | 399 | 22 | 413 | 9.92e-118 | 350 |
| Msa0262390 | AT5G44160.1 | 50.228 | 438 | 133 | 14 | 1 | 399 | 61 | 452 | 1.47e-117 | 351 |
| Msa0262390 | AT2G02080.6 | 47.278 | 349 | 139 | 10 | 1 | 328 | 1 | 325 | 3.91e-92 | 285 |
| Msa0262390 | AT2G02080.2 | 47.278 | 349 | 139 | 10 | 1 | 328 | 1 | 325 | 3.91e-92 | 285 |
| Msa0262390 | AT5G66730.1 | 87.050 | 139 | 18 | 0 | 1 | 139 | 56 | 194 | 6.16e-92 | 286 |
| Msa0262390 | AT2G02080.1 | 47.564 | 349 | 138 | 10 | 1 | 328 | 78 | 402 | 8.05e-92 | 286 |
| Msa0262390 | AT2G02080.4 | 47.564 | 349 | 138 | 10 | 1 | 328 | 78 | 402 | 8.05e-92 | 286 |
| Msa0262390 | AT2G02080.5 | 47.564 | 349 | 138 | 10 | 1 | 328 | 78 | 402 | 8.05e-92 | 286 |
| Msa0262390 | AT2G02080.3 | 47.564 | 349 | 138 | 10 | 1 | 328 | 78 | 402 | 8.05e-92 | 286 |
| Msa0262390 | AT3G50700.1 | 85.612 | 139 | 20 | 0 | 1 | 139 | 58 | 196 | 2.17e-91 | 283 |
| Msa0262390 | AT4G02670.1 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 7.41e-90 | 278 |
| Msa0262390 | AT4G02670.2 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 8.96e-90 | 278 |
| Msa0262390 | AT1G55110.3 | 85.714 | 140 | 19 | 1 | 1 | 139 | 87 | 226 | 3.92e-89 | 278 |
| Msa0262390 | AT1G55110.1 | 85.714 | 140 | 19 | 1 | 1 | 139 | 87 | 226 | 3.92e-89 | 278 |
| Msa0262390 | AT1G55110.2 | 85.714 | 140 | 19 | 1 | 1 | 139 | 87 | 226 | 3.92e-89 | 278 |
| Msa0262390 | AT3G45260.2 | 49.847 | 327 | 131 | 11 | 1 | 318 | 63 | 365 | 6.95e-89 | 276 |
| Msa0262390 | AT3G45260.1 | 49.847 | 327 | 131 | 11 | 1 | 318 | 63 | 365 | 6.95e-89 | 276 |
| Msa0262390 | AT3G13810.6 | 87.857 | 140 | 16 | 1 | 1 | 139 | 75 | 214 | 3.63e-88 | 276 |
| Msa0262390 | AT3G13810.4 | 87.857 | 140 | 16 | 1 | 1 | 139 | 94 | 233 | 6.00e-88 | 276 |
| Msa0262390 | AT3G13810.1 | 87.857 | 140 | 16 | 1 | 1 | 139 | 94 | 233 | 6.00e-88 | 276 |
| Msa0262390 | AT3G13810.5 | 87.857 | 140 | 16 | 1 | 1 | 139 | 89 | 228 | 6.04e-88 | 276 |
| Msa0262390 | AT3G13810.3 | 87.857 | 140 | 16 | 1 | 1 | 139 | 81 | 220 | 8.14e-88 | 275 |
| Msa0262390 | AT3G13810.2 | 87.857 | 140 | 16 | 1 | 1 | 139 | 95 | 234 | 1.09e-87 | 276 |
| Msa0262390 | AT2G02070.2 | 81.295 | 139 | 26 | 0 | 1 | 139 | 76 | 214 | 9.21e-87 | 276 |
| Msa0262390 | AT2G02070.1 | 81.295 | 139 | 26 | 0 | 1 | 139 | 76 | 214 | 9.21e-87 | 276 |
| Msa0262390 | AT1G14580.1 | 80.576 | 139 | 27 | 0 | 1 | 139 | 77 | 215 | 2.51e-86 | 271 |
| Msa0262390 | AT1G14580.2 | 80.576 | 139 | 27 | 0 | 1 | 139 | 77 | 215 | 2.51e-86 | 271 |
| Msa0262390 | AT1G14580.3 | 80.576 | 139 | 27 | 0 | 1 | 139 | 91 | 229 | 3.82e-86 | 271 |
| Msa0262390 | AT5G60470.1 | 75.177 | 141 | 34 | 1 | 1 | 140 | 59 | 199 | 8.81e-81 | 256 |
| Msa0262390 | AT5G60470.3 | 75.177 | 141 | 34 | 1 | 1 | 140 | 64 | 204 | 1.55e-80 | 255 |
| Msa0262390 | AT5G60470.2 | 75.177 | 141 | 34 | 1 | 1 | 140 | 68 | 208 | 1.80e-80 | 255 |
| Msa0262390 | AT1G68130.1 | 65.152 | 132 | 44 | 2 | 1 | 130 | 65 | 196 | 4.54e-58 | 196 |
| Msa0262390 | AT1G25250.1 | 63.910 | 133 | 45 | 2 | 1 | 130 | 34 | 166 | 3.08e-57 | 192 |
| Msa0262390 | AT1G25250.3 | 63.910 | 133 | 45 | 2 | 1 | 130 | 57 | 189 | 3.59e-57 | 192 |
| Msa0262390 | AT2G01940.1 | 62.687 | 134 | 48 | 2 | 1 | 132 | 68 | 201 | 1.16e-56 | 193 |
| Msa0262390 | AT2G01940.3 | 61.481 | 135 | 49 | 3 | 1 | 132 | 68 | 202 | 9.39e-53 | 182 |
| Msa0262390 | AT1G68130.2 | 64.545 | 110 | 37 | 2 | 23 | 130 | 1 | 110 | 6.55e-45 | 159 |
| Msa0262390 | AT1G25250.2 | 63.063 | 111 | 38 | 2 | 23 | 130 | 1 | 111 | 1.09e-43 | 155 |
| Msa0262390 | AT2G01940.2 | 62.500 | 112 | 40 | 2 | 23 | 132 | 1 | 112 | 1.40e-43 | 156 |
| Msa0262390 | AT5G22890.1 | 35.000 | 140 | 77 | 4 | 1 | 126 | 212 | 351 | 1.39e-19 | 90.1 |
| Msa0262390 | AT1G34370.2 | 34.965 | 143 | 79 | 3 | 1 | 129 | 239 | 381 | 3.48e-19 | 90.1 |
| Msa0262390 | AT1G34370.1 | 34.965 | 143 | 79 | 3 | 1 | 129 | 239 | 381 | 3.48e-19 | 90.1 |
| Msa0262390 | AT1G34370.3 | 34.965 | 143 | 79 | 3 | 1 | 129 | 29 | 171 | 3.52e-19 | 87.8 |
| Msa0262390 | AT1G13290.1 | 34.337 | 166 | 87 | 9 | 1 | 154 | 96 | 251 | 7.34e-18 | 84.0 |
| Msa0262390 | AT1G34790.1 | 35.507 | 138 | 79 | 5 | 1 | 129 | 140 | 276 | 1.12e-17 | 83.6 |
| Msa0262390 | AT3G20880.1 | 34.783 | 138 | 80 | 5 | 1 | 129 | 251 | 387 | 2.60e-17 | 84.0 |
| Msa0262390 | AT1G51220.1 | 33.333 | 138 | 82 | 5 | 1 | 129 | 173 | 309 | 6.12e-17 | 82.0 |
| Msa0262390 | AT1G08290.1 | 37.500 | 136 | 72 | 6 | 5 | 129 | 179 | 312 | 2.33e-16 | 80.1 |
| Msa0262390 | AT3G57670.1 | 33.813 | 139 | 80 | 6 | 1 | 129 | 212 | 348 | 3.02e-16 | 80.5 |
Find 70 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATCAGGTTTATCTCTT+TGG | 0.192108 | 2_2:-61259519 | Msa0262390:CDS |
| GAAGAAACAGCTAGAATAAA+TGG | 0.212216 | 2_2:-61259700 | Msa0262390:CDS |
| TGTATAGTGCAAATGAAAAT+TGG | 0.226846 | 2_2:-61259405 | Msa0262390:CDS |
| CAATCATCCTTCAAGGGCTT+TGG | 0.260521 | 2_2:-61260677 | Msa0262390:CDS |
| AATATAAACAACTCATTATT+AGG | 0.262088 | 2_2:-61259670 | Msa0262390:CDS |
| AGGGCTTTGGGAGACTTAAC+TGG | 0.275104 | 2_2:-61260664 | Msa0262390:CDS |
| CTCTTGACATCCATTATTAG+AGG | 0.287901 | 2_2:+61259363 | None:intergenic |
| AATAAATTCTCCTCTAATAA+TGG | 0.294626 | 2_2:-61259373 | Msa0262390:CDS |
| GATCTAGATGTTTGATTAGT+TGG | 0.313962 | 2_2:+61259535 | None:intergenic |
| CTGCATGCGACGTCGTTTCA+TGG | 0.334137 | 2_2:+61258976 | None:intergenic |
| TCGATGTTATTATTAACTAA+TGG | 0.340481 | 2_2:+61259319 | None:intergenic |
| AAAGAACAAGTAAAGAAATA+AGG | 0.347748 | 2_2:-61260738 | Msa0262390:CDS |
| TGCAGAATGAAGAGAGCGTT+TGG | 0.365539 | 2_2:-61258958 | Msa0262390:CDS |
| TCAGCAGAGAGCTACATTTC+AGG | 0.365625 | 2_2:-61259019 | Msa0262390:CDS |
| GCAAATGAAAATTGGGTGTT+TGG | 0.367718 | 2_2:-61259397 | Msa0262390:CDS |
| GTGTGTGAAATTTGTCTAAA+GGG | 0.373283 | 2_2:-61260826 | Msa0262390:CDS |
| TCATTATTCCTTGGAAGCTT+AGG | 0.378657 | 2_2:-61259133 | Msa0262390:CDS |
| TCTTGATTTGTGCATGAGAT+TGG | 0.386882 | 2_2:+61259559 | None:intergenic |
| AATCATCCTTCAAGGGCTTT+GGG | 0.387364 | 2_2:-61260676 | Msa0262390:CDS |
| GTACTTGCAACAAGTGATCT+TGG | 0.393658 | 2_2:-61259043 | Msa0262390:CDS |
| TTTGATGATGAGATTGTGAT+TGG | 0.412049 | 2_2:+61259227 | None:intergenic |
| GCAGAATGAAGAGAGCGTTT+GGG | 0.418512 | 2_2:-61258957 | Msa0262390:CDS |
| GACAAATTTCACACACGAAT+CGG | 0.419935 | 2_2:+61260833 | None:intergenic |
| CGTGTGTGAAATTTGTCTAA+AGG | 0.423777 | 2_2:-61260827 | Msa0262390:CDS |
| TCTAGCTGTTTCTTCTGCTA+AGG | 0.433712 | 2_2:+61259708 | None:intergenic |
| TGCATGCGACGTCGTTTCAT+GGG | 0.435103 | 2_2:+61258977 | None:intergenic |
| GTGTTCACAATCATCCTTCA+AGG | 0.445387 | 2_2:-61260684 | Msa0262390:CDS |
| TTTATGCTGTTCAATCGGAT+TGG | 0.446458 | 2_2:-61260576 | Msa0262390:CDS |
| TCAACTGAATCATTATTCCT+TGG | 0.446740 | 2_2:-61259142 | Msa0262390:CDS |
| AACAACTCATTATTAGGAAT+GGG | 0.451735 | 2_2:-61259664 | Msa0262390:CDS |
| AAGTCTCCCAAAGCCCTTGA+AGG | 0.467713 | 2_2:+61260670 | None:intergenic |
| GACGTGGACATAACCTTCCT+TGG | 0.468137 | 2_2:-61260771 | Msa0262390:CDS |
| TTGTGAACACATGTCTTCTC+TGG | 0.471074 | 2_2:+61260697 | None:intergenic |
| AAACAACTCATTATTAGGAA+TGG | 0.474295 | 2_2:-61259665 | Msa0262390:CDS |
| GTTCTTTGTTTCAGCTTCCA+AGG | 0.486730 | 2_2:+61260754 | None:intergenic |
| AGAGCGTTTGGGGACAAACT+AGG | 0.488786 | 2_2:-61258946 | Msa0262390:CDS |
| ATGCATGAGATTCATCAACT+TGG | 0.490859 | 2_2:-61259451 | Msa0262390:CDS |
| TACTTGCAACAAGTGATCTT+GGG | 0.493836 | 2_2:-61259042 | Msa0262390:CDS |
| GTATAGTGCAAATGAAAATT+GGG | 0.498164 | 2_2:-61259404 | Msa0262390:CDS |
| AATAGTCCAAGTCAAGATCA+TGG | 0.501314 | 2_2:-61259100 | Msa0262390:CDS |
| GGAAGCACGGTGAGAAGAAG+TGG | 0.504824 | 2_2:-61260621 | Msa0262390:CDS |
| GAGCGTTTGGGGACAAACTA+GGG | 0.510953 | 2_2:-61258945 | Msa0262390:CDS |
| TTTGTTTCAGCTTCCAAGGA+AGG | 0.514000 | 2_2:+61260758 | None:intergenic |
| TTATTCCCATGATCTTGACT+TGG | 0.518278 | 2_2:+61259094 | None:intergenic |
| GGGATAGCTTTGTCACTCAC+AGG | 0.519723 | 2_2:-61259744 | Msa0262390:CDS |
| ACTAATCAAACATCTAGATC+AGG | 0.520793 | 2_2:-61259532 | Msa0262390:CDS |
| AATTCTCTTGTCCCAAACAT+AGG | 0.523465 | 2_2:-61259607 | Msa0262390:CDS |
| CTTGGGTCCGCTACAAGCAC+AGG | 0.540913 | 2_2:-61259433 | Msa0262390:CDS |
| GATTGATGAACTGTGGCAAA+TGG | 0.542982 | 2_2:+61258897 | None:intergenic |
| ATCTCAAACCTAAGCTTCCA+AGG | 0.557018 | 2_2:+61259125 | None:intergenic |
| GCATGCGACGTCGTTTCATG+GGG | 0.563017 | 2_2:+61258978 | None:intergenic |
| TGCATGAGATTCATCAACTT+GGG | 0.577843 | 2_2:-61259450 | Msa0262390:CDS |
| ATAGTCCAAGTCAAGATCAT+GGG | 0.586895 | 2_2:-61259099 | Msa0262390:CDS |
| GGAATGGGAGTTAACAACAT+TGG | 0.588635 | 2_2:-61259649 | Msa0262390:CDS |
| TGCCACAGTTCATCAATCAA+CGG | 0.590617 | 2_2:-61258892 | Msa0262390:CDS |
| TGTTCACAATCATCCTTCAA+GGG | 0.591498 | 2_2:-61260683 | Msa0262390:CDS |
| GGGCTTTGGGAGACTTAACT+GGG | 0.593735 | 2_2:-61260663 | Msa0262390:CDS |
| CAGAATGAAGAGAGCGTTTG+GGG | 0.617026 | 2_2:-61258956 | Msa0262390:CDS |
| CATTGCTCCTGTGCTTGTAG+CGG | 0.619229 | 2_2:+61259426 | None:intergenic |
| ACAGTTCATCAATCAACGGA+TGG | 0.619902 | 2_2:-61258888 | Msa0262390:CDS |
| ATGCGACGTCGTTTCATGGG+GGG | 0.625847 | 2_2:+61258980 | None:intergenic |
| TGTTGCTGACATGTTTGCAG+AGG | 0.649923 | 2_2:+61259201 | None:intergenic |
| CATGCGACGTCGTTTCATGG+GGG | 0.652534 | 2_2:+61258979 | None:intergenic |
| TTGGTGTTGTGAGCTATACA+AGG | 0.662064 | 2_2:+61259246 | None:intergenic |
| AAAGCTCACTCAAAGACTTG+TGG | 0.665203 | 2_2:-61260553 | Msa0262390:CDS |
| TGTTGTGAGCTATACAAGGA+AGG | 0.666542 | 2_2:+61259250 | None:intergenic |
| GGATAGCTTTGTCACTCACA+GGG | 0.679845 | 2_2:-61259743 | Msa0262390:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.689229 | 2_2:-61260526 | Msa0262390:CDS |
| AATCTTCAACTTCATCGACG+TGG | 0.715188 | 2_2:-61260787 | Msa0262390:CDS |
| ATCCGTTGATTGATGAACTG+TGG | 0.722662 | 2_2:+61258890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATGGAATAAAATAAAA+GGG | - | chr2_2:61259516-61259535 | Msa0262390:CDS | 10.0% |
| !! | ATCAACAATAAATAAAAAAT+GGG | + | chr2_2:61259925-61259944 | None:intergenic | 10.0% |
| !! | AATCAACAATAAATAAAAAA+TGG | + | chr2_2:61259926-61259945 | None:intergenic | 10.0% |
| !! | TTATATGGAATAAAATAAAA+GGG | - | chr2_2:61259516-61259535 | Msa0262390:CDS | 10.0% |
| !! | ATCAACAATAAATAAAAAAT+GGG | + | chr2_2:61259925-61259944 | None:intergenic | 10.0% |
| !! | AATCAACAATAAATAAAAAA+TGG | + | chr2_2:61259926-61259945 | None:intergenic | 10.0% |
| !! | AAAAAGGTAATAAACTTAAA+AGG | + | chr2_2:61259344-61259363 | None:intergenic | 15.0% |
| !! | CTTATATGGAATAAAATAAA+AGG | - | chr2_2:61259515-61259534 | Msa0262390:CDS | 15.0% |
| !!! | TTGTTTATAATTTAGAATAG+AGG | - | chr2_2:61259841-61259860 | Msa0262390:intron | 15.0% |
| !!! | TGTTTATAATTTAGAATAGA+GGG | - | chr2_2:61259842-61259861 | Msa0262390:intron | 15.0% |
| !! | GATTACTTATCAATATAATT+TGG | - | chr2_2:61259942-61259961 | Msa0262390:intron | 15.0% |
| !! | AATATAAACAACTCATTATT+AGG | - | chr2_2:61260051-61260070 | Msa0262390:intron | 15.0% |
| !! | CATCGATAATAATAATAATA+AGG | - | chr2_2:61260419-61260438 | Msa0262390:intron | 15.0% |
| !! | AAAAAGGTAATAAACTTAAA+AGG | + | chr2_2:61259344-61259363 | None:intergenic | 15.0% |
| !! | CTTATATGGAATAAAATAAA+AGG | - | chr2_2:61259515-61259534 | Msa0262390:CDS | 15.0% |
| !!! | TTGTTTATAATTTAGAATAG+AGG | - | chr2_2:61259841-61259860 | Msa0262390:intron | 15.0% |
| !!! | TGTTTATAATTTAGAATAGA+GGG | - | chr2_2:61259842-61259861 | Msa0262390:intron | 15.0% |
| !! | GATTACTTATCAATATAATT+TGG | - | chr2_2:61259942-61259961 | Msa0262390:intron | 15.0% |
| !! | AATATAAACAACTCATTATT+AGG | - | chr2_2:61260051-61260070 | Msa0262390:intron | 15.0% |
| !! | CATCGATAATAATAATAATA+AGG | - | chr2_2:61260419-61260438 | Msa0262390:intron | 15.0% |
| !! | AAAGAACAAGTAAAGAAATA+AGG | - | chr2_2:61258983-61259002 | Msa0262390:CDS | 20.0% |
| !!! | AAAATTTTATGCTGTTCAAT+CGG | - | chr2_2:61259140-61259159 | Msa0262390:CDS | 20.0% |
| !! | AAATAATAATCACAAAGGAA+AGG | + | chr2_2:61259442-61259461 | None:intergenic | 20.0% |
| !! | AACAGAAATAATAATCACAA+AGG | + | chr2_2:61259447-61259466 | None:intergenic | 20.0% |
| !! | TAATTACTTTGACTAATTTG+AGG | - | chr2_2:61259468-61259487 | Msa0262390:CDS | 20.0% |
| !! | AATTACTTTGACTAATTTGA+GGG | - | chr2_2:61259469-61259488 | Msa0262390:CDS | 20.0% |
| !!! | AGTTTTTCTCTCTAAAATAA+CGG | - | chr2_2:61259607-61259626 | Msa0262390:CDS | 20.0% |
| !! | AGAATTAGTATAACATAACT+AGG | + | chr2_2:61259890-61259909 | None:intergenic | 20.0% |
| !! | AATAAATTCTCCTCTAATAA+TGG | - | chr2_2:61260348-61260367 | Msa0262390:intron | 20.0% |
| !! | TCGATGTTATTATTAACTAA+TGG | + | chr2_2:61260405-61260424 | None:intergenic | 20.0% |
| !! | AAAGAACAAGTAAAGAAATA+AGG | - | chr2_2:61258983-61259002 | Msa0262390:CDS | 20.0% |
| !!! | AAAATTTTATGCTGTTCAAT+CGG | - | chr2_2:61259140-61259159 | Msa0262390:CDS | 20.0% |
| !! | AAATAATAATCACAAAGGAA+AGG | + | chr2_2:61259442-61259461 | None:intergenic | 20.0% |
| !! | AACAGAAATAATAATCACAA+AGG | + | chr2_2:61259447-61259466 | None:intergenic | 20.0% |
| !! | TAATTACTTTGACTAATTTG+AGG | - | chr2_2:61259468-61259487 | Msa0262390:CDS | 20.0% |
| !! | AATTACTTTGACTAATTTGA+GGG | - | chr2_2:61259469-61259488 | Msa0262390:CDS | 20.0% |
| !!! | AGTTTTTCTCTCTAAAATAA+CGG | - | chr2_2:61259607-61259626 | Msa0262390:CDS | 20.0% |
| !! | AGAATTAGTATAACATAACT+AGG | + | chr2_2:61259890-61259909 | None:intergenic | 20.0% |
| !! | AATAAATTCTCCTCTAATAA+TGG | - | chr2_2:61260348-61260367 | Msa0262390:intron | 20.0% |
| !! | TCGATGTTATTATTAACTAA+TGG | + | chr2_2:61260405-61260424 | None:intergenic | 20.0% |
| ! | GTTATTAGCTACTAATAGTT+TGG | - | chr2_2:61259386-61259405 | Msa0262390:CDS | 25.0% |
| !! | TGGAAAATAGAAGTCTTATA+TGG | - | chr2_2:61259501-61259520 | Msa0262390:CDS | 25.0% |
| ! | CAAAAATGTACATTTACTTC+TGG | + | chr2_2:61259824-61259843 | None:intergenic | 25.0% |
| ! | TATAACATAACTAGGTTGTA+GGG | + | chr2_2:61259882-61259901 | None:intergenic | 25.0% |
| ! | AAACAACTCATTATTAGGAA+TGG | - | chr2_2:61260056-61260075 | Msa0262390:intron | 25.0% |
| ! | AACAACTCATTATTAGGAAT+GGG | - | chr2_2:61260057-61260076 | Msa0262390:intron | 25.0% |
| ! | AAAAATGAGTTCCTATGTTT+GGG | + | chr2_2:61260128-61260147 | None:intergenic | 25.0% |
| ! | TGTATAGTGCAAATGAAAAT+TGG | - | chr2_2:61260316-61260335 | Msa0262390:intron | 25.0% |
| ! | GTATAGTGCAAATGAAAATT+GGG | - | chr2_2:61260317-61260336 | Msa0262390:intron | 25.0% |
| !! | ATCATGGGAATAAATTTTGT+GGG | - | chr2_2:61260637-61260656 | Msa0262390:CDS | 25.0% |
| ! | GTTATTAGCTACTAATAGTT+TGG | - | chr2_2:61259386-61259405 | Msa0262390:CDS | 25.0% |
| !! | TGGAAAATAGAAGTCTTATA+TGG | - | chr2_2:61259501-61259520 | Msa0262390:CDS | 25.0% |
| ! | CAAAAATGTACATTTACTTC+TGG | + | chr2_2:61259824-61259843 | None:intergenic | 25.0% |
| ! | TATAACATAACTAGGTTGTA+GGG | + | chr2_2:61259882-61259901 | None:intergenic | 25.0% |
| ! | AAACAACTCATTATTAGGAA+TGG | - | chr2_2:61260056-61260075 | Msa0262390:intron | 25.0% |
| ! | AACAACTCATTATTAGGAAT+GGG | - | chr2_2:61260057-61260076 | Msa0262390:intron | 25.0% |
| ! | AAAAATGAGTTCCTATGTTT+GGG | + | chr2_2:61260128-61260147 | None:intergenic | 25.0% |
| ! | TGTATAGTGCAAATGAAAAT+TGG | - | chr2_2:61260316-61260335 | Msa0262390:intron | 25.0% |
| ! | GTATAGTGCAAATGAAAATT+GGG | - | chr2_2:61260317-61260336 | Msa0262390:intron | 25.0% |
| !! | ATCATGGGAATAAATTTTGT+GGG | - | chr2_2:61260637-61260656 | Msa0262390:CDS | 25.0% |
| GTGTGTGAAATTTGTCTAAA+GGG | - | chr2_2:61258895-61258914 | Msa0262390:CDS | 30.0% | |
| ! | TTTGTCTAAAGGGTTTTCAA+AGG | - | chr2_2:61258905-61258924 | Msa0262390:CDS | 30.0% |
| ! | TTGTCTAAAGGGTTTTCAAA+GGG | - | chr2_2:61258906-61258925 | Msa0262390:CDS | 30.0% |
| ! | GCTACTAATAGTTTGGATTT+TGG | - | chr2_2:61259393-61259412 | Msa0262390:CDS | 30.0% |
| CCAAGAGAATTTATCCAATT+AGG | + | chr2_2:61259686-61259705 | None:intergenic | 30.0% | |
| CCTAATTGGATAAATTCTCT+TGG | - | chr2_2:61259683-61259702 | Msa0262390:CDS | 30.0% | |
| GTATAACATAACTAGGTTGT+AGG | + | chr2_2:61259883-61259902 | None:intergenic | 30.0% | |
| !! | AATATAATTTGGTGCAACAC+AGG | - | chr2_2:61259953-61259972 | Msa0262390:intron | 30.0% |
| GAAGAAACAGCTAGAATAAA+TGG | - | chr2_2:61260021-61260040 | Msa0262390:intron | 30.0% | |
| GAAAAATGAGTTCCTATGTT+TGG | + | chr2_2:61260129-61260148 | None:intergenic | 30.0% | |
| GATCTAGATGTTTGATTAGT+TGG | + | chr2_2:61260189-61260208 | None:intergenic | 30.0% | |
| ACTAATCAAACATCTAGATC+AGG | - | chr2_2:61260189-61260208 | Msa0262390:intron | 30.0% | |
| !! | TTTGATGATGAGATTGTGAT+TGG | + | chr2_2:61260497-61260516 | None:intergenic | 30.0% |
| TCAACTGAATCATTATTCCT+TGG | - | chr2_2:61260579-61260598 | Msa0262390:CDS | 30.0% | |
| ! | GATCATGGGAATAAATTTTG+TGG | - | chr2_2:61260636-61260655 | Msa0262390:CDS | 30.0% |
| ! | TCATGGGAATAAATTTTGTG+GGG | - | chr2_2:61260638-61260657 | Msa0262390:CDS | 30.0% |
| ! | AATAAATTTTGTGGGGTGTA+TGG | - | chr2_2:61260645-61260664 | Msa0262390:CDS | 30.0% |
| GTGTGTGAAATTTGTCTAAA+GGG | - | chr2_2:61258895-61258914 | Msa0262390:CDS | 30.0% | |
| ! | TTTGTCTAAAGGGTTTTCAA+AGG | - | chr2_2:61258905-61258924 | Msa0262390:CDS | 30.0% |
| ! | TTGTCTAAAGGGTTTTCAAA+GGG | - | chr2_2:61258906-61258925 | Msa0262390:CDS | 30.0% |
| ! | GCTACTAATAGTTTGGATTT+TGG | - | chr2_2:61259393-61259412 | Msa0262390:CDS | 30.0% |
| CCAAGAGAATTTATCCAATT+AGG | + | chr2_2:61259686-61259705 | None:intergenic | 30.0% | |
| CCTAATTGGATAAATTCTCT+TGG | - | chr2_2:61259683-61259702 | Msa0262390:CDS | 30.0% | |
| GTATAACATAACTAGGTTGT+AGG | + | chr2_2:61259883-61259902 | None:intergenic | 30.0% | |
| !! | AATATAATTTGGTGCAACAC+AGG | - | chr2_2:61259953-61259972 | Msa0262390:intron | 30.0% |
| GAAGAAACAGCTAGAATAAA+TGG | - | chr2_2:61260021-61260040 | Msa0262390:intron | 30.0% | |
| GAAAAATGAGTTCCTATGTT+TGG | + | chr2_2:61260129-61260148 | None:intergenic | 30.0% | |
| GATCTAGATGTTTGATTAGT+TGG | + | chr2_2:61260189-61260208 | None:intergenic | 30.0% | |
| ACTAATCAAACATCTAGATC+AGG | - | chr2_2:61260189-61260208 | Msa0262390:intron | 30.0% | |
| !! | TTTGATGATGAGATTGTGAT+TGG | + | chr2_2:61260497-61260516 | None:intergenic | 30.0% |
| TCAACTGAATCATTATTCCT+TGG | - | chr2_2:61260579-61260598 | Msa0262390:CDS | 30.0% | |
| ! | GATCATGGGAATAAATTTTG+TGG | - | chr2_2:61260636-61260655 | Msa0262390:CDS | 30.0% |
| ! | TCATGGGAATAAATTTTGTG+GGG | - | chr2_2:61260638-61260657 | Msa0262390:CDS | 30.0% |
| ! | AATAAATTTTGTGGGGTGTA+TGG | - | chr2_2:61260645-61260664 | Msa0262390:CDS | 30.0% |
| GACAAATTTCACACACGAAT+CGG | + | chr2_2:61258891-61258910 | None:intergenic | 35.0% | |
| CGTGTGTGAAATTTGTCTAA+AGG | - | chr2_2:61258894-61258913 | Msa0262390:CDS | 35.0% | |
| TGTTCACAATCATCCTTCAA+GGG | - | chr2_2:61259038-61259057 | Msa0262390:CDS | 35.0% | |
| !!! | GGATAAAGAAGCACTTTTGT+AGG | - | chr2_2:61259079-61259098 | Msa0262390:CDS | 35.0% |
| TTTATGCTGTTCAATCGGAT+TGG | - | chr2_2:61259145-61259164 | Msa0262390:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr2_2:61259195-61259214 | Msa0262390:CDS | 35.0% | |
| !! | ACTTGTCTAGTGCTCTAAAA+TGG | - | chr2_2:61259301-61259320 | Msa0262390:CDS | 35.0% |
| TAATTTGAGGGTTGAGATTG+TGG | - | chr2_2:61259481-61259500 | Msa0262390:CDS | 35.0% | |
| AAAGGGACTTAAATCCTCAA+CGG | - | chr2_2:61259533-61259552 | Msa0262390:CDS | 35.0% | |
| AAAGTAGAGTGAAGCCTAAT+TGG | - | chr2_2:61259669-61259688 | Msa0262390:CDS | 35.0% | |
| !! | CCCTATTGAAATTTTAGCGT+CGG | + | chr2_2:61259749-61259768 | None:intergenic | 35.0% |
| CCGACGCTAAAATTTCAATA+GGG | - | chr2_2:61259746-61259765 | Msa0262390:CDS | 35.0% | |
| CGACGCTAAAATTTCAATAG+GGG | - | chr2_2:61259747-61259766 | Msa0262390:CDS | 35.0% | |
| AATTCTCTTGTCCCAAACAT+AGG | - | chr2_2:61260114-61260133 | Msa0262390:intron | 35.0% | |
| !! | TCTTGATTTGTGCATGAGAT+TGG | + | chr2_2:61260165-61260184 | None:intergenic | 35.0% |
| CTAGATCAGGTTTATCTCTT+TGG | - | chr2_2:61260202-61260221 | Msa0262390:intron | 35.0% | |
| ATGCATGAGATTCATCAACT+TGG | - | chr2_2:61260270-61260289 | Msa0262390:intron | 35.0% | |
| TGCATGAGATTCATCAACTT+GGG | - | chr2_2:61260271-61260290 | Msa0262390:intron | 35.0% | |
| GCAAATGAAAATTGGGTGTT+TGG | - | chr2_2:61260324-61260343 | Msa0262390:intron | 35.0% | |
| CTCTTGACATCCATTATTAG+AGG | + | chr2_2:61260361-61260380 | None:intergenic | 35.0% | |
| TTGCAAAAAGCTGCTCAAAT+TGG | - | chr2_2:61260549-61260568 | Msa0262390:CDS | 35.0% | |
| TGCAAAAAGCTGCTCAAATT+GGG | - | chr2_2:61260550-61260569 | Msa0262390:CDS | 35.0% | |
| TCATTATTCCTTGGAAGCTT+AGG | - | chr2_2:61260588-61260607 | Msa0262390:CDS | 35.0% | |
| AATAGTCCAAGTCAAGATCA+TGG | - | chr2_2:61260621-61260640 | Msa0262390:CDS | 35.0% | |
| ATAGTCCAAGTCAAGATCAT+GGG | - | chr2_2:61260622-61260641 | Msa0262390:CDS | 35.0% | |
| TTATTCCCATGATCTTGACT+TGG | + | chr2_2:61260630-61260649 | None:intergenic | 35.0% | |
| TACTTGCAACAAGTGATCTT+GGG | - | chr2_2:61260679-61260698 | Msa0262390:CDS | 35.0% | |
| GACAAATTTCACACACGAAT+CGG | + | chr2_2:61258891-61258910 | None:intergenic | 35.0% | |
| CGTGTGTGAAATTTGTCTAA+AGG | - | chr2_2:61258894-61258913 | Msa0262390:CDS | 35.0% | |
| TGTTCACAATCATCCTTCAA+GGG | - | chr2_2:61259038-61259057 | Msa0262390:CDS | 35.0% | |
| !!! | GGATAAAGAAGCACTTTTGT+AGG | - | chr2_2:61259079-61259098 | Msa0262390:CDS | 35.0% |
| TTTATGCTGTTCAATCGGAT+TGG | - | chr2_2:61259145-61259164 | Msa0262390:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr2_2:61259195-61259214 | Msa0262390:CDS | 35.0% | |
| !! | ACTTGTCTAGTGCTCTAAAA+TGG | - | chr2_2:61259301-61259320 | Msa0262390:CDS | 35.0% |
| TAATTTGAGGGTTGAGATTG+TGG | - | chr2_2:61259481-61259500 | Msa0262390:CDS | 35.0% | |
| AAAGGGACTTAAATCCTCAA+CGG | - | chr2_2:61259533-61259552 | Msa0262390:CDS | 35.0% | |
| AAAGTAGAGTGAAGCCTAAT+TGG | - | chr2_2:61259669-61259688 | Msa0262390:CDS | 35.0% | |
| !! | CCCTATTGAAATTTTAGCGT+CGG | + | chr2_2:61259749-61259768 | None:intergenic | 35.0% |
| CCGACGCTAAAATTTCAATA+GGG | - | chr2_2:61259746-61259765 | Msa0262390:CDS | 35.0% | |
| CGACGCTAAAATTTCAATAG+GGG | - | chr2_2:61259747-61259766 | Msa0262390:CDS | 35.0% | |
| AATTCTCTTGTCCCAAACAT+AGG | - | chr2_2:61260114-61260133 | Msa0262390:intron | 35.0% | |
| !! | TCTTGATTTGTGCATGAGAT+TGG | + | chr2_2:61260165-61260184 | None:intergenic | 35.0% |
| CTAGATCAGGTTTATCTCTT+TGG | - | chr2_2:61260202-61260221 | Msa0262390:intron | 35.0% | |
| ATGCATGAGATTCATCAACT+TGG | - | chr2_2:61260270-61260289 | Msa0262390:intron | 35.0% | |
| TGCATGAGATTCATCAACTT+GGG | - | chr2_2:61260271-61260290 | Msa0262390:intron | 35.0% | |
| GCAAATGAAAATTGGGTGTT+TGG | - | chr2_2:61260324-61260343 | Msa0262390:intron | 35.0% | |
| CTCTTGACATCCATTATTAG+AGG | + | chr2_2:61260361-61260380 | None:intergenic | 35.0% | |
| TTGCAAAAAGCTGCTCAAAT+TGG | - | chr2_2:61260549-61260568 | Msa0262390:CDS | 35.0% | |
| TGCAAAAAGCTGCTCAAATT+GGG | - | chr2_2:61260550-61260569 | Msa0262390:CDS | 35.0% | |
| TCATTATTCCTTGGAAGCTT+AGG | - | chr2_2:61260588-61260607 | Msa0262390:CDS | 35.0% | |
| AATAGTCCAAGTCAAGATCA+TGG | - | chr2_2:61260621-61260640 | Msa0262390:CDS | 35.0% | |
| ATAGTCCAAGTCAAGATCAT+GGG | - | chr2_2:61260622-61260641 | Msa0262390:CDS | 35.0% | |
| TTATTCCCATGATCTTGACT+TGG | + | chr2_2:61260630-61260649 | None:intergenic | 35.0% | |
| TACTTGCAACAAGTGATCTT+GGG | - | chr2_2:61260679-61260698 | Msa0262390:CDS | 35.0% | |
| AATCTTCAACTTCATCGACG+TGG | - | chr2_2:61258934-61258953 | Msa0262390:CDS | 40.0% | |
| TTTGTTTCAGCTTCCAAGGA+AGG | + | chr2_2:61258966-61258985 | None:intergenic | 40.0% | |
| ! | GTTCTTTGTTTCAGCTTCCA+AGG | + | chr2_2:61258970-61258989 | None:intergenic | 40.0% |
| TTGTGAACACATGTCTTCTC+TGG | + | chr2_2:61259027-61259046 | None:intergenic | 40.0% | |
| GTGTTCACAATCATCCTTCA+AGG | - | chr2_2:61259037-61259056 | Msa0262390:CDS | 40.0% | |
| AATCATCCTTCAAGGGCTTT+GGG | - | chr2_2:61259045-61259064 | Msa0262390:CDS | 40.0% | |
| ! | AAGCACTTTTGTAGGAAGCA+CGG | - | chr2_2:61259087-61259106 | Msa0262390:CDS | 40.0% |
| AAAGCTCACTCAAAGACTTG+TGG | - | chr2_2:61259168-61259187 | Msa0262390:CDS | 40.0% | |
| ! | ACTGTGGCACTATCTTTTCA+AGG | - | chr2_2:61259211-61259230 | Msa0262390:CDS | 40.0% |
| CGTTGAAGATAGCTGCAAAA+AGG | + | chr2_2:61259360-61259379 | None:intergenic | 40.0% | |
| TCAAGTACTATACTCCGTTG+AGG | + | chr2_2:61259550-61259569 | None:intergenic | 40.0% | |
| GCCGACGCTAAAATTTCAAT+AGG | - | chr2_2:61259745-61259764 | Msa0262390:CDS | 40.0% | |
| !! | ATAATTTGGTGCAACACAGG+AGG | - | chr2_2:61259956-61259975 | Msa0262390:intron | 40.0% |
| !! | TAATTTGGTGCAACACAGGA+GGG | - | chr2_2:61259957-61259976 | Msa0262390:intron | 40.0% |
| !! | TCTAGCTGTTTCTTCTGCTA+AGG | + | chr2_2:61260016-61260035 | None:intergenic | 40.0% |
| GGAATGGGAGTTAACAACAT+TGG | - | chr2_2:61260072-61260091 | Msa0262390:intron | 40.0% | |
| TGTTGTGAGCTATACAAGGA+AGG | + | chr2_2:61260474-61260493 | None:intergenic | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr2_2:61260478-61260497 | None:intergenic | 40.0% |
| ATCTCAAACCTAAGCTTCCA+AGG | + | chr2_2:61260599-61260618 | None:intergenic | 40.0% | |
| GTACTTGCAACAAGTGATCT+TGG | - | chr2_2:61260678-61260697 | Msa0262390:CDS | 40.0% | |
| ! | GGACAAACTAGGGATTTTCT+TGG | - | chr2_2:61260786-61260805 | Msa0262390:CDS | 40.0% |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr2_2:61260792-61260811 | Msa0262390:CDS | 40.0% |
| GATTGATGAACTGTGGCAAA+TGG | + | chr2_2:61260827-61260846 | None:intergenic | 40.0% | |
| TGCCACAGTTCATCAATCAA+CGG | - | chr2_2:61260829-61260848 | Msa0262390:CDS | 40.0% | |
| ! | ATCCGTTGATTGATGAACTG+TGG | + | chr2_2:61260834-61260853 | None:intergenic | 40.0% |
| ACAGTTCATCAATCAACGGA+TGG | - | chr2_2:61260833-61260852 | Msa0262390:CDS | 40.0% | |
| AATCTTCAACTTCATCGACG+TGG | - | chr2_2:61258934-61258953 | Msa0262390:CDS | 40.0% | |
| TTTGTTTCAGCTTCCAAGGA+AGG | + | chr2_2:61258966-61258985 | None:intergenic | 40.0% | |
| ! | GTTCTTTGTTTCAGCTTCCA+AGG | + | chr2_2:61258970-61258989 | None:intergenic | 40.0% |
| TTGTGAACACATGTCTTCTC+TGG | + | chr2_2:61259027-61259046 | None:intergenic | 40.0% | |
| GTGTTCACAATCATCCTTCA+AGG | - | chr2_2:61259037-61259056 | Msa0262390:CDS | 40.0% | |
| AATCATCCTTCAAGGGCTTT+GGG | - | chr2_2:61259045-61259064 | Msa0262390:CDS | 40.0% | |
| ! | AAGCACTTTTGTAGGAAGCA+CGG | - | chr2_2:61259087-61259106 | Msa0262390:CDS | 40.0% |
| AAAGCTCACTCAAAGACTTG+TGG | - | chr2_2:61259168-61259187 | Msa0262390:CDS | 40.0% | |
| ! | ACTGTGGCACTATCTTTTCA+AGG | - | chr2_2:61259211-61259230 | Msa0262390:CDS | 40.0% |
| CGTTGAAGATAGCTGCAAAA+AGG | + | chr2_2:61259360-61259379 | None:intergenic | 40.0% | |
| TCAAGTACTATACTCCGTTG+AGG | + | chr2_2:61259550-61259569 | None:intergenic | 40.0% | |
| GCCGACGCTAAAATTTCAAT+AGG | - | chr2_2:61259745-61259764 | Msa0262390:CDS | 40.0% | |
| !! | ATAATTTGGTGCAACACAGG+AGG | - | chr2_2:61259956-61259975 | Msa0262390:intron | 40.0% |
| !! | TAATTTGGTGCAACACAGGA+GGG | - | chr2_2:61259957-61259976 | Msa0262390:intron | 40.0% |
| !! | TCTAGCTGTTTCTTCTGCTA+AGG | + | chr2_2:61260016-61260035 | None:intergenic | 40.0% |
| GGAATGGGAGTTAACAACAT+TGG | - | chr2_2:61260072-61260091 | Msa0262390:intron | 40.0% | |
| TGTTGTGAGCTATACAAGGA+AGG | + | chr2_2:61260474-61260493 | None:intergenic | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr2_2:61260478-61260497 | None:intergenic | 40.0% |
| ATCTCAAACCTAAGCTTCCA+AGG | + | chr2_2:61260599-61260618 | None:intergenic | 40.0% | |
| GTACTTGCAACAAGTGATCT+TGG | - | chr2_2:61260678-61260697 | Msa0262390:CDS | 40.0% | |
| ! | GGACAAACTAGGGATTTTCT+TGG | - | chr2_2:61260786-61260805 | Msa0262390:CDS | 40.0% |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr2_2:61260792-61260811 | Msa0262390:CDS | 40.0% |
| GATTGATGAACTGTGGCAAA+TGG | + | chr2_2:61260827-61260846 | None:intergenic | 40.0% | |
| TGCCACAGTTCATCAATCAA+CGG | - | chr2_2:61260829-61260848 | Msa0262390:CDS | 40.0% | |
| ! | ATCCGTTGATTGATGAACTG+TGG | + | chr2_2:61260834-61260853 | None:intergenic | 40.0% |
| ACAGTTCATCAATCAACGGA+TGG | - | chr2_2:61260833-61260852 | Msa0262390:CDS | 40.0% | |
| CAATCATCCTTCAAGGGCTT+TGG | - | chr2_2:61259044-61259063 | Msa0262390:CDS | 45.0% | |
| !! | GGATAGCTTTGTCACTCACA+GGG | - | chr2_2:61259978-61259997 | Msa0262390:intron | 45.0% |
| TGTTGCTGACATGTTTGCAG+AGG | + | chr2_2:61260523-61260542 | None:intergenic | 45.0% | |
| TCAGCAGAGAGCTACATTTC+AGG | - | chr2_2:61260702-61260721 | Msa0262390:CDS | 45.0% | |
| !! | TGCAGAATGAAGAGAGCGTT+TGG | - | chr2_2:61260763-61260782 | Msa0262390:CDS | 45.0% |
| !! | GCAGAATGAAGAGAGCGTTT+GGG | - | chr2_2:61260764-61260783 | Msa0262390:CDS | 45.0% |
| !! | CAGAATGAAGAGAGCGTTTG+GGG | - | chr2_2:61260765-61260784 | Msa0262390:CDS | 45.0% |
| !!! | AGGGATTTTCTTGGTGTTGG+TGG | - | chr2_2:61260795-61260814 | Msa0262390:CDS | 45.0% |
| CAATCATCCTTCAAGGGCTT+TGG | - | chr2_2:61259044-61259063 | Msa0262390:CDS | 45.0% | |
| !! | GGATAGCTTTGTCACTCACA+GGG | - | chr2_2:61259978-61259997 | Msa0262390:intron | 45.0% |
| TGTTGCTGACATGTTTGCAG+AGG | + | chr2_2:61260523-61260542 | None:intergenic | 45.0% | |
| TCAGCAGAGAGCTACATTTC+AGG | - | chr2_2:61260702-61260721 | Msa0262390:CDS | 45.0% | |
| !! | TGCAGAATGAAGAGAGCGTT+TGG | - | chr2_2:61260763-61260782 | Msa0262390:CDS | 45.0% |
| !! | GCAGAATGAAGAGAGCGTTT+GGG | - | chr2_2:61260764-61260783 | Msa0262390:CDS | 45.0% |
| !! | CAGAATGAAGAGAGCGTTTG+GGG | - | chr2_2:61260765-61260784 | Msa0262390:CDS | 45.0% |
| !!! | AGGGATTTTCTTGGTGTTGG+TGG | - | chr2_2:61260795-61260814 | Msa0262390:CDS | 45.0% |
| GACGTGGACATAACCTTCCT+TGG | - | chr2_2:61258950-61258969 | Msa0262390:CDS | 50.0% | |
| AAGTCTCCCAAAGCCCTTGA+AGG | + | chr2_2:61259054-61259073 | None:intergenic | 50.0% | |
| !! | AGGGCTTTGGGAGACTTAAC+TGG | - | chr2_2:61259057-61259076 | Msa0262390:CDS | 50.0% |
| !! | GGGCTTTGGGAGACTTAACT+GGG | - | chr2_2:61259058-61259077 | Msa0262390:CDS | 50.0% |
| !! | GGGATAGCTTTGTCACTCAC+AGG | - | chr2_2:61259977-61259996 | Msa0262390:intron | 50.0% |
| CATTGCTCCTGTGCTTGTAG+CGG | + | chr2_2:61260298-61260317 | None:intergenic | 50.0% | |
| TGCATGCGACGTCGTTTCAT+GGG | + | chr2_2:61260747-61260766 | None:intergenic | 50.0% | |
| ! | AGAGCGTTTGGGGACAAACT+AGG | - | chr2_2:61260775-61260794 | Msa0262390:CDS | 50.0% |
| GAGCGTTTGGGGACAAACTA+GGG | - | chr2_2:61260776-61260795 | Msa0262390:CDS | 50.0% | |
| GACGTGGACATAACCTTCCT+TGG | - | chr2_2:61258950-61258969 | Msa0262390:CDS | 50.0% | |
| AAGTCTCCCAAAGCCCTTGA+AGG | + | chr2_2:61259054-61259073 | None:intergenic | 50.0% | |
| !! | AGGGCTTTGGGAGACTTAAC+TGG | - | chr2_2:61259057-61259076 | Msa0262390:CDS | 50.0% |
| !! | GGGCTTTGGGAGACTTAACT+GGG | - | chr2_2:61259058-61259077 | Msa0262390:CDS | 50.0% |
| !! | GGGATAGCTTTGTCACTCAC+AGG | - | chr2_2:61259977-61259996 | Msa0262390:intron | 50.0% |
| CATTGCTCCTGTGCTTGTAG+CGG | + | chr2_2:61260298-61260317 | None:intergenic | 50.0% | |
| TGCATGCGACGTCGTTTCAT+GGG | + | chr2_2:61260747-61260766 | None:intergenic | 50.0% | |
| ! | AGAGCGTTTGGGGACAAACT+AGG | - | chr2_2:61260775-61260794 | Msa0262390:CDS | 50.0% |
| GAGCGTTTGGGGACAAACTA+GGG | - | chr2_2:61260776-61260795 | Msa0262390:CDS | 50.0% | |
| ! | GGAAGCACGGTGAGAAGAAG+TGG | - | chr2_2:61259100-61259119 | Msa0262390:CDS | 55.0% |
| ATGCGACGTCGTTTCATGGG+GGG | + | chr2_2:61260744-61260763 | None:intergenic | 55.0% | |
| CATGCGACGTCGTTTCATGG+GGG | + | chr2_2:61260745-61260764 | None:intergenic | 55.0% | |
| GCATGCGACGTCGTTTCATG+GGG | + | chr2_2:61260746-61260765 | None:intergenic | 55.0% | |
| CTGCATGCGACGTCGTTTCA+TGG | + | chr2_2:61260748-61260767 | None:intergenic | 55.0% | |
| ! | GGAAGCACGGTGAGAAGAAG+TGG | - | chr2_2:61259100-61259119 | Msa0262390:CDS | 55.0% |
| ATGCGACGTCGTTTCATGGG+GGG | + | chr2_2:61260744-61260763 | None:intergenic | 55.0% | |
| CATGCGACGTCGTTTCATGG+GGG | + | chr2_2:61260745-61260764 | None:intergenic | 55.0% | |
| GCATGCGACGTCGTTTCATG+GGG | + | chr2_2:61260746-61260765 | None:intergenic | 55.0% | |
| CTGCATGCGACGTCGTTTCA+TGG | + | chr2_2:61260748-61260767 | None:intergenic | 55.0% | |
| CTTGGGTCCGCTACAAGCAC+AGG | - | chr2_2:61260288-61260307 | Msa0262390:intron | 60.0% | |
| CTTGGGTCCGCTACAAGCAC+AGG | - | chr2_2:61260288-61260307 | Msa0262390:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 61258877 | 61260866 | 61258877 | ID=Msa0262390;Name=Msa0262390 |
| chr2_2 | mRNA | 61258877 | 61260866 | 61258877 | ID=Msa0262390-mRNA-1;Parent=Msa0262390;Name=Msa0262390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|415 |
| chr2_2 | exon | 61260511 | 61260866 | 61260511 | ID=Msa0262390-mRNA-1:exon:18868;Parent=Msa0262390-mRNA-1 |
| chr2_2 | exon | 61258877 | 61259768 | 61258877 | ID=Msa0262390-mRNA-1:exon:18867;Parent=Msa0262390-mRNA-1 |
| chr2_2 | CDS | 61260511 | 61260866 | 61260511 | ID=Msa0262390-mRNA-1:cds;Parent=Msa0262390-mRNA-1 |
| chr2_2 | CDS | 61258877 | 61259768 | 61258877 | ID=Msa0262390-mRNA-1:cds;Parent=Msa0262390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
