Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229720 | XP_003601531.2 | 92.812 | 473 | 34 | 0 | 3 | 475 | 10 | 482 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229720 | G7J8V1 | 92.812 | 473 | 34 | 0 | 3 | 475 | 10 | 482 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229720 | Msa0387700 | 0.836184 | 1.085591e-56 | -8.615850e-47 |
| Msa0229720 | Msa0387760 | 0.864210 | 1.432683e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229720 | MtrunA17_Chr3g0120771 | 92.812 | 473 | 34 | 0 | 3 | 475 | 10 | 482 | 0.0 | 914 |
| Msa0229720 | MtrunA17_Chr3g0120781 | 67.857 | 476 | 101 | 7 | 1 | 475 | 1 | 425 | 0.0 | 631 |
| Msa0229720 | MtrunA17_Chr6g0466721 | 65.753 | 438 | 100 | 4 | 38 | 475 | 5 | 392 | 0.0 | 567 |
| Msa0229720 | MtrunA17_Chr6g0466711 | 82.022 | 89 | 16 | 0 | 305 | 393 | 1 | 89 | 1.18e-46 | 156 |
| Msa0229720 | MtrunA17_Chr6g0466701 | 61.538 | 117 | 45 | 0 | 28 | 144 | 4 | 120 | 7.35e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229720 | AT4G25330.1 | 35.196 | 179 | 106 | 3 | 47 | 223 | 37 | 207 | 3.48e-28 | 112 |
Find 111 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGAAGCTTGCATTTC+TGG | 0.094771 | 2_2:+1557882 | Msa0229720:CDS |
| ATTTGTTAATATAACCTTTC+TGG | 0.146623 | 2_2:+1557970 | Msa0229720:three_prime_UTR |
| ACCTCTTTCTGTTCAGGTTC+AGG | 0.218482 | 2_2:+1553114 | Msa0229720:CDS |
| AGGGGCCAAGCGATCTGTTT+TGG | 0.228672 | 2_2:+1555652 | Msa0229720:CDS |
| AGGGGCCAAGCGATCTGTTT+TGG | 0.228672 | 2_2:+1555691 | Msa0229720:CDS |
| TAGAAGCTTACCTCAGATTT+AGG | 0.228922 | 2_2:-1557382 | None:intergenic |
| CCGGGCCAAGCGATCAGTTT+TGG | 0.244511 | 2_2:+1555574 | Msa0229720:CDS |
| GAGTGTCGGGAGCTGGTTCC+AGG | 0.263329 | 2_2:+1553142 | Msa0229720:CDS |
| TCCAGCTGTGGCTTCATTCT+TGG | 0.270435 | 2_2:+1555269 | Msa0229720:CDS |
| GGGAGCTGGTTCCAGGTGTT+AGG | 0.277062 | 2_2:+1553149 | Msa0229720:CDS |
| GTTCAGACCTCTTTCTGTTC+AGG | 0.329497 | 2_2:+1553108 | Msa0229720:CDS |
| ACAGATCGCTTGGCCCCTTC+AGG | 0.329863 | 2_2:-1555647 | None:intergenic |
| AACTGCATGTCTTCGTTCTT+CGG | 0.352064 | 2_2:-1552887 | None:intergenic |
| GCTTCTTGTGCAGCCGCTCT+TGG | 0.359019 | 2_2:-1557870 | None:intergenic |
| TGCTATGAGGGATTTGTATT+CGG | 0.359680 | 2_2:+1557834 | Msa0229720:CDS |
| GAAGATGTTATGATGTGTTT+TGG | 0.362413 | 2_2:-1556990 | None:intergenic |
| AGGTGCCAAGCAAACTGTTT+TGG | 0.365249 | 2_2:+1555613 | Msa0229720:CDS |
| GTTCTTCGGTGTCATGGTTT+CGG | 0.382444 | 2_2:-1552873 | None:intergenic |
| AACACGACGTCGCGTTTACT+AGG | 0.389994 | 2_2:-1552827 | None:intergenic |
| AAACAAACCTTCTGGAGAAC+TGG | 0.407449 | 2_2:-1555717 | None:intergenic |
| AATCTGAAACTAGGTTCTAT+AGG | 0.409162 | 2_2:+1557921 | Msa0229720:exon |
| ATCACAATCTGGACAGGAAA+TGG | 0.411738 | 2_2:+1555314 | Msa0229720:CDS |
| TTCTTCACTAAGCGTTGAAA+TGG | 0.422515 | 2_2:+1552787 | Msa0229720:exon |
| TGTGTACCTTTATACTGTCT+TGG | 0.424257 | 2_2:+1555166 | Msa0229720:CDS |
| CTTGGCCCCTTCAGGAGAAC+TGG | 0.425769 | 2_2:-1555639 | None:intergenic |
| GTCTTCGTTCTTCGGTGTCA+TGG | 0.427189 | 2_2:-1552879 | None:intergenic |
| CTATGATGCTGTTGTCGATA+CGG | 0.432250 | 2_2:+1553213 | Msa0229720:CDS |
| CTTGGCACCTTCAGAAGAAC+CGG | 0.448227 | 2_2:-1555600 | None:intergenic |
| CGTTTATGAAATCTGAAACT+AGG | 0.452229 | 2_2:+1557912 | Msa0229720:exon |
| GGAGCTGGTTCCAGGTGTTA+GGG | 0.455064 | 2_2:+1553150 | Msa0229720:CDS |
| CGACGTCGCGTTTACTAGGT+TGG | 0.457333 | 2_2:-1552823 | None:intergenic |
| CTTCATTCTTGGATATTACA+AGG | 0.457723 | 2_2:+1555280 | Msa0229720:CDS |
| CACATCATAACATCTTCAAC+TGG | 0.458653 | 2_2:+1556996 | Msa0229720:CDS |
| TTTATACTGTCTTGGTCACA+TGG | 0.463500 | 2_2:+1555174 | Msa0229720:CDS |
| CTTGGCCCCTTCAGTAGAAC+TGG | 0.468765 | 2_2:-1555678 | None:intergenic |
| TGTTAGGGTTTGTGCTTCGC+AGG | 0.469050 | 2_2:+1553165 | Msa0229720:CDS |
| ATTTCAACGCTTAGTGAAGA+AGG | 0.472561 | 2_2:-1552785 | None:intergenic |
| GGTTCAGGATCACGAGTGTC+GGG | 0.473562 | 2_2:+1553129 | Msa0229720:CDS |
| TGGGTGCCAGTTCTCCTGAA+GGG | 0.474895 | 2_2:+1555633 | Msa0229720:CDS |
| GGCACCCAAAACAGTTTGCT+TGG | 0.478020 | 2_2:-1555618 | None:intergenic |
| TTGGGTGCCAGTTCTCCTGA+AGG | 0.480310 | 2_2:+1555632 | Msa0229720:CDS |
| TTGGGTGCCAGTTCTACTGA+AGG | 0.481190 | 2_2:+1555671 | Msa0229720:CDS |
| TTGGGTACCGGTTCTTCTGA+AGG | 0.485975 | 2_2:+1555593 | Msa0229720:CDS |
| AAATGTGTGCATGATATTGA+TGG | 0.487824 | 2_2:+1556791 | Msa0229720:CDS |
| ATGGTGGTGTACTGCAACAC+AGG | 0.488051 | 2_2:+1555333 | Msa0229720:CDS |
| GACGTCGCGTTTACTAGGTT+GGG | 0.496512 | 2_2:-1552822 | None:intergenic |
| ATGTGACCAAGACAGTATAA+AGG | 0.500143 | 2_2:-1555172 | None:intergenic |
| GGGTGCCAGTTCTCCTGAAG+GGG | 0.503685 | 2_2:+1555634 | Msa0229720:CDS |
| TCCAAGAATGAAGCCACAGC+TGG | 0.503907 | 2_2:-1555270 | None:intergenic |
| TATATCTCCGATGATAAACT+TGG | 0.509755 | 2_2:-1556900 | None:intergenic |
| TTGCAACATGATGGCACCCC+TGG | 0.509975 | 2_2:-1556925 | None:intergenic |
| TGGGTGCCAGTTCTACTGAA+GGG | 0.510576 | 2_2:+1555672 | Msa0229720:CDS |
| TCCTGAACCTGAACAGAAAG+AGG | 0.511183 | 2_2:-1553115 | None:intergenic |
| TCAAGACAGCCAGTGCTATG+AGG | 0.513042 | 2_2:+1557821 | Msa0229720:CDS |
| CCAGTTCCAGCGAAAACGCC+GGG | 0.514093 | 2_2:+1555556 | Msa0229720:intron |
| GGATCACGAGTGTCGGGAGC+TGG | 0.515386 | 2_2:+1553135 | Msa0229720:CDS |
| TTGGGTGCCAGTTCTCCAGA+AGG | 0.516886 | 2_2:+1555710 | Msa0229720:CDS |
| AGGAGAATAGAATCACAATC+TGG | 0.519936 | 2_2:+1555303 | Msa0229720:CDS |
| GGCACCCAAAACAGATCGCT+TGG | 0.520400 | 2_2:-1555657 | None:intergenic |
| GGCACCCAAAACAGATCGCT+TGG | 0.520400 | 2_2:-1555696 | None:intergenic |
| TGGTCACATGGGCCAAATGT+TGG | 0.523682 | 2_2:+1555186 | Msa0229720:CDS |
| CAAGACAGCCAGTGCTATGA+GGG | 0.525996 | 2_2:+1557822 | Msa0229720:CDS |
| GGGTGCCAGTTCTACTGAAG+GGG | 0.526110 | 2_2:+1555673 | Msa0229720:CDS |
| CCAAAACTGATCGCTTGGCC+CGG | 0.528989 | 2_2:-1555574 | None:intergenic |
| CCTTTCTGGTATAGCTTCAG+AGG | 0.531149 | 2_2:+1557984 | Msa0229720:three_prime_UTR |
| ATTGATAATTTGTTCGAACC+CGG | 0.531159 | 2_2:+1553043 | Msa0229720:CDS |
| AATAGAATCACAATCTGGAC+AGG | 0.535018 | 2_2:+1555308 | Msa0229720:CDS |
| GGTACCCAAAACTGATCGCT+TGG | 0.536010 | 2_2:-1555579 | None:intergenic |
| ACCGTCAGTGTTACGTTGGA+AGG | 0.536971 | 2_2:+1552977 | Msa0229720:CDS |
| AAACTCTTGAAGATCTTCCA+TGG | 0.540550 | 2_2:-1553077 | None:intergenic |
| CCTCTCAGTTTGCAACATGA+TGG | 0.545960 | 2_2:-1556934 | None:intergenic |
| AGGTTCAGGATCACGAGTGT+CGG | 0.549905 | 2_2:+1553128 | Msa0229720:CDS |
| ACTGCATGGATTCTTATCTC+AGG | 0.550248 | 2_2:-1558051 | None:intergenic |
| ACTTTACTCTTTCCATCCTG+TGG | 0.553303 | 2_2:-1557757 | None:intergenic |
| TCCAGTTCCAGCGAAAACGC+CGG | 0.556318 | 2_2:+1555555 | Msa0229720:intron |
| GCTGGATCATACTCTAGTAC+AGG | 0.562859 | 2_2:-1555252 | None:intergenic |
| TTTGGTTCTAGTTGGCCTTG+TGG | 0.567369 | 2_2:+1556743 | Msa0229720:intron |
| TCATAACATCTTCAACTGGC+AGG | 0.567554 | 2_2:+1557000 | Msa0229720:CDS |
| ATACAAATCCCTCATAGCAC+TGG | 0.572442 | 2_2:-1557830 | None:intergenic |
| CGGTTTGTTGAGAAGCTGTG+AGG | 0.573005 | 2_2:-1552853 | None:intergenic |
| TAAAATTGAAAGTGACTGCA+TGG | 0.579793 | 2_2:-1558065 | None:intergenic |
| CCTCTGAAGCTATACCAGAA+AGG | 0.582930 | 2_2:-1557984 | None:intergenic |
| GTAACTACGAAGATGACGCT+TGG | 0.588473 | 2_2:+1552951 | Msa0229720:CDS |
| TTGATAATTTGTTCGAACCC+GGG | 0.590041 | 2_2:+1553044 | Msa0229720:CDS |
| AATTTGAAGATTGTTTACTC+AGG | 0.596581 | 2_2:+1557787 | Msa0229720:CDS |
| TCCTTCCAACGTAACACTGA+CGG | 0.597934 | 2_2:-1552978 | None:intergenic |
| AAGAAGCTTGCATTTCTGGA+AGG | 0.597936 | 2_2:+1557886 | Msa0229720:CDS |
| CATCATGTTGCAAACTGAGA+GGG | 0.605805 | 2_2:+1556935 | Msa0229720:CDS |
| ATCTTCGTAGTTACGAAACT+CGG | 0.607772 | 2_2:-1552942 | None:intergenic |
| GGTTTGTTGAGAAGCTGTGA+GGG | 0.608654 | 2_2:-1552852 | None:intergenic |
| GTTAATCGTTCACGAACAGA+AGG | 0.610755 | 2_2:+1552907 | Msa0229720:CDS |
| TTTCAACGCTTAGTGAAGAA+GGG | 0.612132 | 2_2:-1552784 | None:intergenic |
| TTGCAGAATGCACCACAGGA+TGG | 0.615727 | 2_2:+1557745 | Msa0229720:intron |
| AACGCTGTTTCCTAAATCTG+AGG | 0.616710 | 2_2:+1557372 | Msa0229720:CDS |
| ATGGATTCTTATCTCAGGTG+AGG | 0.617937 | 2_2:-1558046 | None:intergenic |
| TATCATCGGAGATATATACC+AGG | 0.620834 | 2_2:+1556907 | Msa0229720:CDS |
| AATGTGTGCATGATATTGAT+GGG | 0.634957 | 2_2:+1556792 | Msa0229720:CDS |
| CCATCATGTTGCAAACTGAG+AGG | 0.636376 | 2_2:+1556934 | Msa0229720:CDS |
| TCAACTCTTTATCTTCCACA+AGG | 0.640133 | 2_2:-1556758 | None:intergenic |
| GAAGCACAAACCCTAACACC+TGG | 0.649009 | 2_2:-1553160 | None:intergenic |
| GTACACCGTCAGTGTTACGT+TGG | 0.658687 | 2_2:+1552973 | Msa0229720:CDS |
| ACTCTAGTACAGGCTGCACA+AGG | 0.661177 | 2_2:-1555242 | None:intergenic |
| ATCTTCAAGAGTTTGAGACA+CGG | 0.662272 | 2_2:+1553086 | Msa0229720:CDS |
| ATCATCGGAGATATATACCA+GGG | 0.663531 | 2_2:+1556908 | Msa0229720:CDS |
| ACAATCTGGACAGGAAATGG+TGG | 0.671026 | 2_2:+1555317 | Msa0229720:CDS |
| TTATACTGTCTTGGTCACAT+GGG | 0.673466 | 2_2:+1555175 | Msa0229720:CDS |
| CAACAGCATCATAGAAACGA+AGG | 0.677214 | 2_2:-1553204 | None:intergenic |
| AATTTGCTGATCACCAAGAG+CGG | 0.685810 | 2_2:+1557857 | Msa0229720:CDS |
| CATTCTTGGATATTACAAGG+AGG | 0.704872 | 2_2:+1555283 | Msa0229720:CDS |
| ACTAGAGTATGATCCAGCTG+TGG | 0.711810 | 2_2:+1555257 | Msa0229720:CDS |
| TCATCGGAGATATATACCAG+GGG | 0.730219 | 2_2:+1556909 | Msa0229720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTTTTATTT+TGG | + | chr2_2:1553403-1553422 | Msa0229720:intron | 0.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr2_2:1553870-1553889 | Msa0229720:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr2_2:1553871-1553890 | Msa0229720:intron | 10.0% |
| !! | TAATTAAATGCATATATTAA+TGG | + | chr2_2:1554252-1554271 | Msa0229720:intron | 10.0% |
| !! | AATTAAATGCATATATTAAT+GGG | + | chr2_2:1554253-1554272 | Msa0229720:intron | 10.0% |
| !! | TGTAATTAAATAATCTATTA+GGG | - | chr2_2:1554515-1554534 | None:intergenic | 10.0% |
| !!! | TTATTTTTGTTATTTACTAT+CGG | + | chr2_2:1557084-1557103 | Msa0229720:intron | 10.0% |
| !! | AATAAAAAACAAAAAAGATT+GGG | - | chr2_2:1558091-1558110 | None:intergenic | 10.0% |
| !! | AAATAAAAAACAAAAAAGAT+TGG | - | chr2_2:1558092-1558111 | None:intergenic | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | - | chr2_2:1553835-1553854 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr2_2:1553872-1553891 | Msa0229720:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr2_2:1553935-1553954 | Msa0229720:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr2_2:1553936-1553955 | Msa0229720:intron | 15.0% |
| !!! | TTAAAATTTTGATACATTGA+AGG | + | chr2_2:1554168-1554187 | Msa0229720:intron | 15.0% |
| !! | GTAATTAAATAATCTATTAG+GGG | - | chr2_2:1554514-1554533 | None:intergenic | 15.0% |
| !! | GTGTAATTAAATAATCTATT+AGG | - | chr2_2:1554516-1554535 | None:intergenic | 15.0% |
| !!! | ATATTTTATTATGCAAAAAG+TGG | + | chr2_2:1554677-1554696 | Msa0229720:intron | 15.0% |
| !! | AATAATAAAATTCTAAGTGT+TGG | - | chr2_2:1555900-1555919 | None:intergenic | 15.0% |
| !! | ATAACAATTATGATAAGTAA+CGG | - | chr2_2:1556350-1556369 | None:intergenic | 15.0% |
| !! | AGTAGATAAAAATGATAAAT+GGG | - | chr2_2:1556633-1556652 | None:intergenic | 15.0% |
| !! | AAGTAGATAAAAATGATAAA+TGG | - | chr2_2:1556634-1556653 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTATCTACTT+TGG | + | chr2_2:1556634-1556653 | Msa0229720:intron | 15.0% |
| !! | CTTTGTTAAAATTATAACTT+AGG | - | chr2_2:1557144-1557163 | None:intergenic | 15.0% |
| !! | AATAAGGATTACATATTTAA+AGG | - | chr2_2:1557567-1557586 | None:intergenic | 15.0% |
| !! | CAGTAATGAAGTTAAATATT+GGG | + | chr2_2:1553358-1553377 | Msa0229720:intron | 20.0% |
| !! | AGTAATGAAGTTAAATATTG+GGG | + | chr2_2:1553359-1553378 | Msa0229720:intron | 20.0% |
| !! | AATGCTTGTATTAATTGATT+TGG | + | chr2_2:1553562-1553581 | Msa0229720:intron | 20.0% |
| !!! | ATGCTTGTATTAATTGATTT+GGG | + | chr2_2:1553563-1553582 | Msa0229720:intron | 20.0% |
| !! | TATATGAAAAGAGTTAATGT+CGG | - | chr2_2:1553776-1553795 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | - | chr2_2:1553836-1553855 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr2_2:1553895-1553914 | Msa0229720:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr2_2:1553968-1553987 | Msa0229720:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr2_2:1553969-1553988 | Msa0229720:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr2_2:1554005-1554024 | Msa0229720:intron | 20.0% |
| !! | AAAATGTAAGGTATAAAATG+TGG | - | chr2_2:1554723-1554742 | None:intergenic | 20.0% |
| !!! | ACATTTTATACCTTACATTT+TGG | + | chr2_2:1554722-1554741 | Msa0229720:intron | 20.0% |
| !! | AATATAATTCAAACATCTCT+CGG | + | chr2_2:1554799-1554818 | Msa0229720:intron | 20.0% |
| !! | TTTAATATGTTTGACATTAG+AGG | + | chr2_2:1554842-1554861 | Msa0229720:intron | 20.0% |
| !! | TTAATATGTTTGACATTAGA+GGG | + | chr2_2:1554843-1554862 | Msa0229720:intron | 20.0% |
| !!! | TGTGAAATTGATGTTTTTAT+AGG | + | chr2_2:1555101-1555120 | Msa0229720:intron | 20.0% |
| !!! | AAAAAATGTAGTAGTTTTTC+TGG | + | chr2_2:1556133-1556152 | Msa0229720:intron | 20.0% |
| !! | ACAACATAAATAAATGGTAA+TGG | - | chr2_2:1556281-1556300 | None:intergenic | 20.0% |
| !! | TACCATTTATTTATGTTGTT+TGG | + | chr2_2:1556282-1556301 | Msa0229720:intron | 20.0% |
| !! | ATCCAAACAACATAAATAAA+TGG | - | chr2_2:1556287-1556306 | None:intergenic | 20.0% |
| !!! | AAAGTTATTACCTTTTAAGT+AGG | - | chr2_2:1556378-1556397 | None:intergenic | 20.0% |
| !!! | AAAAATATCAAAGCATCAAT+AGG | + | chr2_2:1557349-1557368 | Msa0229720:CDS | 20.0% |
| !! | CTAAGAATAATTTAATAGCA+TGG | + | chr2_2:1557433-1557452 | Msa0229720:intron | 20.0% |
| !!! | ATTTGTTAATATAACCTTTC+TGG | + | chr2_2:1557970-1557989 | Msa0229720:three_prime_UTR | 20.0% |
| ! | ATCTCTCTCTACAAAAATAA+AGG | + | chr2_2:1552729-1552748 | Msa0229720:five_prime_UTR | 25.0% |
| ! | TCTCTCTCTACAAAAATAAA+GGG | + | chr2_2:1552730-1552749 | Msa0229720:five_prime_UTR | 25.0% |
| ! | GAAAAGCTAAAAACTGAAAA+TGG | - | chr2_2:1553280-1553299 | None:intergenic | 25.0% |
| ! | GCAGTAATGAAGTTAAATAT+TGG | + | chr2_2:1553357-1553376 | Msa0229720:intron | 25.0% |
| !!! | TTCATTTCAGACATTTTGAT+TGG | + | chr2_2:1553462-1553481 | Msa0229720:intron | 25.0% |
| !!! | TGCTTGTATTAATTGATTTG+GGG | + | chr2_2:1553564-1553583 | Msa0229720:intron | 25.0% |
| !!! | TTTAGTCTTAAATGTGTAAC+CGG | + | chr2_2:1553658-1553677 | Msa0229720:intron | 25.0% |
| ! | TGAAGAACTATTATTGTTAC+CGG | - | chr2_2:1553680-1553699 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr2_2:1553894-1553913 | Msa0229720:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr2_2:1554004-1554023 | Msa0229720:intron | 25.0% |
| !! | AAGCATAGATTTTACAAAAG+AGG | + | chr2_2:1554769-1554788 | Msa0229720:intron | 25.0% |
| ! | ATATAATTCAAACATCTCTC+GGG | + | chr2_2:1554800-1554819 | Msa0229720:intron | 25.0% |
| ! | TAATATGTTTGACATTAGAG+GGG | + | chr2_2:1554844-1554863 | Msa0229720:intron | 25.0% |
| ! | TGTAATTTAAGCATCTCTTA+TGG | + | chr2_2:1554875-1554894 | Msa0229720:intron | 25.0% |
| ! | GTAATTTAAGCATCTCTTAT+GGG | + | chr2_2:1554876-1554895 | Msa0229720:intron | 25.0% |
| ! | AATAAAAACCAAGAGCAAAA+TGG | + | chr2_2:1555380-1555399 | Msa0229720:CDS | 25.0% |
| ! | ATAAAAACCAAGAGCAAAAT+GGG | + | chr2_2:1555381-1555400 | Msa0229720:CDS | 25.0% |
| !!! | TTATTTTGAACGAATGCAAA+AGG | + | chr2_2:1555404-1555423 | Msa0229720:CDS | 25.0% |
| ! | TAGTAGCAGTATATGATTAT+TGG | + | chr2_2:1555498-1555517 | Msa0229720:intron | 25.0% |
| ! | TGTTTATTTGAACATGCATA+AGG | - | chr2_2:1556574-1556593 | None:intergenic | 25.0% |
| !!! | TCCTCAGTTTTTCAAATTTT+TGG | + | chr2_2:1556725-1556744 | Msa0229720:intron | 25.0% |
| ! | ACCAAAAATTTGAAAAACTG+AGG | - | chr2_2:1556729-1556748 | None:intergenic | 25.0% |
| !!! | TTCAAATTTTTGGTTCTAGT+TGG | + | chr2_2:1556735-1556754 | Msa0229720:intron | 25.0% |
| !! | CATTTTTCCAAGTTTATCAT+CGG | + | chr2_2:1556893-1556912 | Msa0229720:CDS | 25.0% |
| !!! | ATAATTTTAACAAAGCTTCC+AGG | + | chr2_2:1557149-1557168 | Msa0229720:intron | 25.0% |
| ! | GTGATAATTGAAAAACAAGT+GGG | + | chr2_2:1557322-1557341 | Msa0229720:CDS | 25.0% |
| ! | ATTATTCTTAGTCAGAAAAG+AGG | - | chr2_2:1557424-1557443 | None:intergenic | 25.0% |
| ! | ATTAAAACTACAAAGTTAGC+TGG | - | chr2_2:1557598-1557617 | None:intergenic | 25.0% |
| ! | AATTTGAAGATTGTTTACTC+AGG | + | chr2_2:1557787-1557806 | Msa0229720:CDS | 25.0% |
| !! | GTGTTTCATATACAATTTTG+CGG | + | chr2_2:1557946-1557965 | Msa0229720:three_prime_UTR | 25.0% |
| !! | TGTTTCATATACAATTTTGC+GGG | + | chr2_2:1557947-1557966 | Msa0229720:three_prime_UTR | 25.0% |
| !! | ATTGATAATTTGTTCGAACC+CGG | + | chr2_2:1553043-1553062 | Msa0229720:CDS | 30.0% |
| TAAAAACTGAAAATGGCGTT+TGG | - | chr2_2:1553273-1553292 | None:intergenic | 30.0% | |
| ! | TTTGGACATTGATGTGTTTT+TGG | + | chr2_2:1553421-1553440 | Msa0229720:intron | 30.0% |
| !! | GCTTGTATTAATTGATTTGG+GGG | + | chr2_2:1553565-1553584 | Msa0229720:intron | 30.0% |
| TTGTGTCAATTAAATTGGGA+CGG | - | chr2_2:1553831-1553850 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr2_2:1553879-1553898 | Msa0229720:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr2_2:1553982-1554001 | Msa0229720:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr2_2:1553983-1554002 | Msa0229720:intron | 30.0% |
| ACATTGAAGGACTATTAATG+TGG | + | chr2_2:1554181-1554200 | Msa0229720:intron | 30.0% | |
| TGGCTATTCATTACATATTC+AGG | + | chr2_2:1554201-1554220 | Msa0229720:intron | 30.0% | |
| GGCTATTCATTACATATTCA+GGG | + | chr2_2:1554202-1554221 | Msa0229720:intron | 30.0% | |
| GTATAAAATGTGGAGAAAAG+GGG | - | chr2_2:1554713-1554732 | None:intergenic | 30.0% | |
| GGTATAAAATGTGGAGAAAA+GGG | - | chr2_2:1554714-1554733 | None:intergenic | 30.0% | |
| AGGTATAAAATGTGGAGAAA+AGG | - | chr2_2:1554715-1554734 | None:intergenic | 30.0% | |
| ! | TAGATTTTACAAAAGAGGAG+AGG | + | chr2_2:1554774-1554793 | Msa0229720:intron | 30.0% |
| ! | AGATTTTACAAAAGAGGAGA+GGG | + | chr2_2:1554775-1554794 | Msa0229720:intron | 30.0% |
| TATAATTCAAACATCTCTCG+GGG | + | chr2_2:1554801-1554820 | Msa0229720:intron | 30.0% | |
| !!! | TTGAAGTTTTAGCTATGAGT+TGG | + | chr2_2:1555037-1555056 | Msa0229720:intron | 30.0% |
| ! | GAAGTCAATTTTCCAACATT+TGG | - | chr2_2:1555201-1555220 | None:intergenic | 30.0% |
| CTTCATTCTTGGATATTACA+AGG | + | chr2_2:1555280-1555299 | Msa0229720:CDS | 30.0% | |
| !! | TCTTGGTTTTTATTTCAGTG+TGG | - | chr2_2:1555374-1555393 | None:intergenic | 30.0% |
| ! | AAAATAACCCATTTTGCTCT+TGG | - | chr2_2:1555391-1555410 | None:intergenic | 30.0% |
| !! | AAACTAATGGAAAGTACTCA+TGG | - | chr2_2:1555455-1555474 | None:intergenic | 30.0% |
| TTTCTCAGCATACAAACTAA+TGG | - | chr2_2:1555468-1555487 | None:intergenic | 30.0% | |
| TGTGATACAATTTGAATGGA+TGG | + | chr2_2:1556089-1556108 | Msa0229720:intron | 30.0% | |
| ATACAATTTGAATGGATGGA+TGG | + | chr2_2:1556093-1556112 | Msa0229720:intron | 30.0% | |
| !! | CATTGTTTCTCTTTTTCTTC+CGG | + | chr2_2:1556307-1556326 | Msa0229720:intron | 30.0% |
| GTTATCTCTTCCTACTTAAA+AGG | + | chr2_2:1556365-1556384 | Msa0229720:intron | 30.0% | |
| CTATGTAGAACTTGCAAAAT+GGG | + | chr2_2:1556523-1556542 | Msa0229720:intron | 30.0% | |
| TATGTAGAACTTGCAAAATG+GGG | + | chr2_2:1556524-1556543 | Msa0229720:intron | 30.0% | |
| AAATGTGTGCATGATATTGA+TGG | + | chr2_2:1556791-1556810 | Msa0229720:CDS | 30.0% | |
| AATGTGTGCATGATATTGAT+GGG | + | chr2_2:1556792-1556811 | Msa0229720:CDS | 30.0% | |
| TATATCTCCGATGATAAACT+TGG | - | chr2_2:1556903-1556922 | None:intergenic | 30.0% | |
| ! | GAAGATGTTATGATGTGTTT+TGG | - | chr2_2:1556993-1557012 | None:intergenic | 30.0% |
| !! | ATAACTTAGGTTGATGAATC+AGG | - | chr2_2:1557131-1557150 | None:intergenic | 30.0% |
| AAATTATCACCAAAACAACC+TGG | - | chr2_2:1557170-1557189 | None:intergenic | 30.0% | |
| !! | TGTTTTTCAATTATCACCCA+TGG | - | chr2_2:1557319-1557338 | None:intergenic | 30.0% |
| GGTGATAATTGAAAAACAAG+TGG | + | chr2_2:1557321-1557340 | Msa0229720:CDS | 30.0% | |
| !!! | TAATTCTTTTTTGCCTCAGT+TGG | - | chr2_2:1557476-1557495 | None:intergenic | 30.0% |
| TTAGCTGGAAGGTTATAATA+AGG | - | chr2_2:1557583-1557602 | None:intergenic | 30.0% | |
| ! | CGTTTATGAAATCTGAAACT+AGG | + | chr2_2:1557912-1557931 | Msa0229720:exon | 30.0% |
| ! | AATCTGAAACTAGGTTCTAT+AGG | + | chr2_2:1557921-1557940 | Msa0229720:exon | 30.0% |
| TAAAATTGAAAGTGACTGCA+TGG | - | chr2_2:1558068-1558087 | None:intergenic | 30.0% | |
| TTTCAACGCTTAGTGAAGAA+GGG | - | chr2_2:1552787-1552806 | None:intergenic | 35.0% | |
| ATTTCAACGCTTAGTGAAGA+AGG | - | chr2_2:1552788-1552807 | None:intergenic | 35.0% | |
| !! | TTCTTCACTAAGCGTTGAAA+TGG | + | chr2_2:1552787-1552806 | Msa0229720:exon | 35.0% |
| ATCTTCGTAGTTACGAAACT+CGG | - | chr2_2:1552945-1552964 | None:intergenic | 35.0% | |
| !! | TTGATAATTTGTTCGAACCC+GGG | + | chr2_2:1553044-1553063 | Msa0229720:CDS | 35.0% |
| AAACTCTTGAAGATCTTCCA+TGG | - | chr2_2:1553080-1553099 | None:intergenic | 35.0% | |
| ! | ATCTTCAAGAGTTTGAGACA+CGG | + | chr2_2:1553086-1553105 | Msa0229720:CDS | 35.0% |
| !!! | ACATTTTGATTGGTTGTGTG+TGG | + | chr2_2:1553472-1553491 | Msa0229720:intron | 35.0% |
| TTGGTTGTGTGTGGTTTAAA+TGG | + | chr2_2:1553481-1553500 | Msa0229720:intron | 35.0% | |
| !! | AATTGATTTGGGGGATTTGA+AGG | + | chr2_2:1553574-1553593 | Msa0229720:intron | 35.0% |
| !! | ATTGATTTGGGGGATTTGAA+GGG | + | chr2_2:1553575-1553594 | Msa0229720:intron | 35.0% |
| !! | TCCATATGGGTGTTTTTGTA+AGG | + | chr2_2:1553623-1553642 | Msa0229720:intron | 35.0% |
| !! | CCATATGGGTGTTTTTGTAA+GGG | + | chr2_2:1553624-1553643 | Msa0229720:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr2_2:1554018-1554037 | Msa0229720:intron | 35.0% | |
| ! | ATACGAAGCAGTAGTCATTT+TGG | - | chr2_2:1554229-1554248 | None:intergenic | 35.0% |
| !!! | GTTAGTGTGAGGTCTTTTTT+TGG | + | chr2_2:1554383-1554402 | Msa0229720:intron | 35.0% |
| ! | TAGTTTTTGTCTGAACCTTG+AGG | + | chr2_2:1554419-1554438 | Msa0229720:intron | 35.0% |
| AAGTTTAAGTGAGCTGAGTT+CGG | - | chr2_2:1554456-1554475 | None:intergenic | 35.0% | |
| ATAATTCAAACATCTCTCGG+GGG | + | chr2_2:1554802-1554821 | Msa0229720:intron | 35.0% | |
| TTTAAGCATCTCTTATGGGA+AGG | + | chr2_2:1554880-1554899 | Msa0229720:intron | 35.0% | |
| TTAAGCATCTCTTATGGGAA+GGG | + | chr2_2:1554881-1554900 | Msa0229720:intron | 35.0% | |
| TGTGTACCTTTATACTGTCT+TGG | + | chr2_2:1555166-1555185 | Msa0229720:CDS | 35.0% | |
| ATGTGACCAAGACAGTATAA+AGG | - | chr2_2:1555175-1555194 | None:intergenic | 35.0% | |
| TTTATACTGTCTTGGTCACA+TGG | + | chr2_2:1555174-1555193 | Msa0229720:CDS | 35.0% | |
| TTATACTGTCTTGGTCACAT+GGG | + | chr2_2:1555175-1555194 | Msa0229720:CDS | 35.0% | |
| CATTCTTGGATATTACAAGG+AGG | + | chr2_2:1555283-1555302 | Msa0229720:CDS | 35.0% | |
| AGGAGAATAGAATCACAATC+TGG | + | chr2_2:1555303-1555322 | Msa0229720:CDS | 35.0% | |
| AATAGAATCACAATCTGGAC+AGG | + | chr2_2:1555308-1555327 | Msa0229720:CDS | 35.0% | |
| !! | TTGTTTCTGTGCAATAGTAG+AGG | + | chr2_2:1555734-1555753 | Msa0229720:intron | 35.0% |
| GTAGAGGTTGACACTAAAAT+TGG | + | chr2_2:1555750-1555769 | Msa0229720:intron | 35.0% | |
| !! | TGGTTCAATTTTGACAACCA+TGG | - | chr2_2:1555880-1555899 | None:intergenic | 35.0% |
| TTTCTGGATGTGCTAACAAA+AGG | + | chr2_2:1556149-1556168 | Msa0229720:intron | 35.0% | |
| TTCCGGTAGATCTATTGATA+TGG | + | chr2_2:1556324-1556343 | Msa0229720:intron | 35.0% | |
| TAGATACAACCCTTCTAGTA+AGG | + | chr2_2:1556461-1556480 | Msa0229720:intron | 35.0% | |
| AGATACAACCCTTCTAGTAA+GGG | + | chr2_2:1556462-1556481 | Msa0229720:intron | 35.0% | |
| ! | CCATTTTGCAAGTTCTACAT+AGG | - | chr2_2:1556525-1556544 | None:intergenic | 35.0% |
| CCTATGTAGAACTTGCAAAA+TGG | + | chr2_2:1556522-1556541 | Msa0229720:intron | 35.0% | |
| !! | GGTTAGAGAAAGTATTAAGC+AGG | - | chr2_2:1556553-1556572 | None:intergenic | 35.0% |
| AACAATTGCACACTAAGTGA+AGG | - | chr2_2:1556660-1556679 | None:intergenic | 35.0% | |
| TCAACTCTTTATCTTCCACA+AGG | - | chr2_2:1556761-1556780 | None:intergenic | 35.0% | |
| AAAAACTCAACAGCTGTTGA+TGG | - | chr2_2:1556840-1556859 | None:intergenic | 35.0% | |
| TATCATCGGAGATATATACC+AGG | + | chr2_2:1556907-1556926 | Msa0229720:CDS | 35.0% | |
| ATCATCGGAGATATATACCA+GGG | + | chr2_2:1556908-1556927 | Msa0229720:CDS | 35.0% | |
| CACATCATAACATCTTCAAC+TGG | + | chr2_2:1556996-1557015 | Msa0229720:CDS | 35.0% | |
| AACCCACAATGCTTAGAAAA+AGG | + | chr2_2:1557198-1557217 | Msa0229720:intron | 35.0% | |
| !! | AGCCTTTTTCTAAGCATTGT+GGG | - | chr2_2:1557203-1557222 | None:intergenic | 35.0% |
| !! | AAGCCTTTTTCTAAGCATTG+TGG | - | chr2_2:1557204-1557223 | None:intergenic | 35.0% |
| CAATGCTTAGAAAAAGGCTT+TGG | + | chr2_2:1557204-1557223 | Msa0229720:intron | 35.0% | |
| TATACAGAATTCTCTTGCCT+AGG | - | chr2_2:1557239-1557258 | None:intergenic | 35.0% | |
| TAGAAGCTTACCTCAGATTT+AGG | - | chr2_2:1557385-1557404 | None:intergenic | 35.0% | |
| ATTCTTAGTCAGAAAAGAGG+AGG | - | chr2_2:1557421-1557440 | None:intergenic | 35.0% | |
| ! | ATCAATTTTATGCTAGCTCC+TGG | + | chr2_2:1557521-1557540 | Msa0229720:intron | 35.0% |
| AAACTACAAAGTTAGCTGGA+AGG | - | chr2_2:1557594-1557613 | None:intergenic | 35.0% | |
| ACCACTGAGTTCACTTAATT+GGG | + | chr2_2:1557628-1557647 | Msa0229720:intron | 35.0% | |
| TGCTATGAGGGATTTGTATT+CGG | + | chr2_2:1557834-1557853 | Msa0229720:CDS | 35.0% | |
| AACTGCATGTCTTCGTTCTT+CGG | - | chr2_2:1552890-1552909 | None:intergenic | 40.0% | |
| GTTAATCGTTCACGAACAGA+AGG | + | chr2_2:1552907-1552926 | Msa0229720:CDS | 40.0% | |
| TTCCATGGAGTTGAAAAACC+CGG | - | chr2_2:1553065-1553084 | None:intergenic | 40.0% | |
| CAACAGCATCATAGAAACGA+AGG | - | chr2_2:1553207-1553226 | None:intergenic | 40.0% | |
| CTATGATGCTGTTGTCGATA+CGG | + | chr2_2:1553213-1553232 | Msa0229720:CDS | 40.0% | |
| TCCATCGTTATGCATCCATA+TGG | + | chr2_2:1553609-1553628 | Msa0229720:intron | 40.0% | |
| CCATCGTTATGCATCCATAT+GGG | + | chr2_2:1553610-1553629 | Msa0229720:intron | 40.0% | |
| CCCTTACAAAAACACCCATA+TGG | - | chr2_2:1553627-1553646 | None:intergenic | 40.0% | |
| TCGGTACTACTTTAACGCAA+TGG | - | chr2_2:1553757-1553776 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | - | chr2_2:1553828-1553847 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr2_2:1554019-1554038 | Msa0229720:intron | 40.0% | |
| TGACTAACAGTGCACAATCA+AGG | + | chr2_2:1554139-1554158 | Msa0229720:intron | 40.0% | |
| ! | TCGATGAAAATCGACTCACT+TGG | + | chr2_2:1554320-1554339 | Msa0229720:intron | 40.0% |
| GATTGTGTATTCAACTCTCG+CGG | + | chr2_2:1554361-1554380 | Msa0229720:intron | 40.0% | |
| !! | ATACCTTACATTTTGGTCGC+TGG | + | chr2_2:1554729-1554748 | Msa0229720:intron | 40.0% |
| !! | TACCTTACATTTTGGTCGCT+GGG | + | chr2_2:1554730-1554749 | Msa0229720:intron | 40.0% |
| CGCTGGGCTATTAGAAATAA+AGG | + | chr2_2:1554746-1554765 | Msa0229720:intron | 40.0% | |
| ATGTTTGACATTAGAGGGGA+AGG | + | chr2_2:1554848-1554867 | Msa0229720:intron | 40.0% | |
| TGTTTGACATTAGAGGGGAA+GGG | + | chr2_2:1554849-1554868 | Msa0229720:intron | 40.0% | |
| ATCACAATCTGGACAGGAAA+TGG | + | chr2_2:1555314-1555333 | Msa0229720:CDS | 40.0% | |
| ! | AAACAAACCTTCTGGAGAAC+TGG | - | chr2_2:1555720-1555739 | None:intergenic | 40.0% |
| TTGCACAGAAACAAACCTTC+TGG | - | chr2_2:1555728-1555747 | None:intergenic | 40.0% | |
| AGATCCTAACAGAGTCACAA+GGG | - | chr2_2:1555851-1555870 | None:intergenic | 40.0% | |
| AAGATCCTAACAGAGTCACA+AGG | - | chr2_2:1555852-1555871 | None:intergenic | 40.0% | |
| TTGTGACTCTGTTAGGATCT+TGG | + | chr2_2:1555851-1555870 | Msa0229720:intron | 40.0% | |
| ! | TGTTAGGATCTTGGTAACCA+TGG | + | chr2_2:1555860-1555879 | Msa0229720:intron | 40.0% |
| AGAAGCTGACATGATTCTAC+AGG | - | chr2_2:1555942-1555961 | None:intergenic | 40.0% | |
| AGAATCATGTCAGCTTCTAC+TGG | + | chr2_2:1555944-1555963 | Msa0229720:intron | 40.0% | |
| CACTCATCTCAAAAGATGCA+GGG | - | chr2_2:1556066-1556085 | None:intergenic | 40.0% | |
| !!! | CTGCATCTTTTGAGATGAGT+GGG | + | chr2_2:1556065-1556084 | Msa0229720:intron | 40.0% |
| GGGCTGTGATACAATTTGAA+TGG | + | chr2_2:1556085-1556104 | Msa0229720:intron | 40.0% | |
| ACAAAAGGAATTCGACTGCT+TGG | + | chr2_2:1556164-1556183 | Msa0229720:intron | 40.0% | |
| GGCCATATCAATAGATCTAC+CGG | - | chr2_2:1556329-1556348 | None:intergenic | 40.0% | |
| AAGACCATCCCTTACTAGAA+GGG | - | chr2_2:1556473-1556492 | None:intergenic | 40.0% | |
| TAAGACCATCCCTTACTAGA+AGG | - | chr2_2:1556474-1556493 | None:intergenic | 40.0% | |
| TGATAAATGGGTGTAGAGCA+TGG | - | chr2_2:1556621-1556640 | None:intergenic | 40.0% | |
| TCATCGGAGATATATACCAG+GGG | + | chr2_2:1556909-1556928 | Msa0229720:CDS | 40.0% | |
| CATCATGTTGCAAACTGAGA+GGG | + | chr2_2:1556935-1556954 | Msa0229720:CDS | 40.0% | |
| TCATAACATCTTCAACTGGC+AGG | + | chr2_2:1557000-1557019 | Msa0229720:CDS | 40.0% | |
| AATCAGGCATTCACTCTTCA+CGG | - | chr2_2:1557115-1557134 | None:intergenic | 40.0% | |
| ! | ACAAAGCTTCCAGGTTGTTT+TGG | + | chr2_2:1557158-1557177 | Msa0229720:intron | 40.0% |
| AGACAGTGAAGAGGTTTGAA+TGG | - | chr2_2:1557287-1557306 | None:intergenic | 40.0% | |
| ! | AACGCTGTTTCCTAAATCTG+AGG | + | chr2_2:1557372-1557391 | Msa0229720:CDS | 40.0% |
| TTAGTCAGAAAAGAGGAGGA+AGG | - | chr2_2:1557417-1557436 | None:intergenic | 40.0% | |
| AATAGCATGGTAGTAGAGCA+TGG | + | chr2_2:1557446-1557465 | Msa0229720:intron | 40.0% | |
| !!! | TCTTTTTTGCCTCAGTTGGT+CGG | - | chr2_2:1557472-1557491 | None:intergenic | 40.0% |
| CAATTAAGTGAACTCAGTGG+TGG | - | chr2_2:1557629-1557648 | None:intergenic | 40.0% | |
| CACCACTGAGTTCACTTAAT+TGG | + | chr2_2:1557627-1557646 | Msa0229720:intron | 40.0% | |
| ACTTTACTCTTTCCATCCTG+TGG | - | chr2_2:1557760-1557779 | None:intergenic | 40.0% | |
| ATACAAATCCCTCATAGCAC+TGG | - | chr2_2:1557833-1557852 | None:intergenic | 40.0% | |
| !! | AATTTGCTGATCACCAAGAG+CGG | + | chr2_2:1557857-1557876 | Msa0229720:CDS | 40.0% |
| ! | AAGAAGCTTGCATTTCTGGA+AGG | + | chr2_2:1557886-1557905 | Msa0229720:CDS | 40.0% |
| ATGGATTCTTATCTCAGGTG+AGG | - | chr2_2:1558049-1558068 | None:intergenic | 40.0% | |
| ACTGCATGGATTCTTATCTC+AGG | - | chr2_2:1558054-1558073 | None:intergenic | 40.0% | |
| !! | GGTTTGTTGAGAAGCTGTGA+GGG | - | chr2_2:1552855-1552874 | None:intergenic | 45.0% |
| !! | GTTCTTCGGTGTCATGGTTT+CGG | - | chr2_2:1552876-1552895 | None:intergenic | 45.0% |
| GTAACTACGAAGATGACGCT+TGG | + | chr2_2:1552951-1552970 | Msa0229720:CDS | 45.0% | |
| TCCTTCCAACGTAACACTGA+CGG | - | chr2_2:1552981-1553000 | None:intergenic | 45.0% | |
| TCCATGGAGTTGAAAAACCC+GGG | - | chr2_2:1553064-1553083 | None:intergenic | 45.0% | |
| GTTCAGACCTCTTTCTGTTC+AGG | + | chr2_2:1553108-1553127 | Msa0229720:CDS | 45.0% | |
| ! | ACCTCTTTCTGTTCAGGTTC+AGG | + | chr2_2:1553114-1553133 | Msa0229720:CDS | 45.0% |
| TCCTGAACCTGAACAGAAAG+AGG | - | chr2_2:1553118-1553137 | None:intergenic | 45.0% | |
| CCCATATGGATGCATAACGA+TGG | - | chr2_2:1553613-1553632 | None:intergenic | 45.0% | |
| TATAAATACTCCCTCCGTCC+CGG | - | chr2_2:1554040-1554059 | None:intergenic | 45.0% | |
| !! | GGACGGAGGGAGTATTTATA+AGG | + | chr2_2:1554040-1554059 | Msa0229720:intron | 45.0% |
| GTTTGACATTAGAGGGGAAG+GGG | + | chr2_2:1554850-1554869 | Msa0229720:intron | 45.0% | |
| AGCTTTGCATTGCCATTCTC+TGG | + | chr2_2:1554978-1554997 | Msa0229720:intron | 45.0% | |
| GCTTTGCATTGCCATTCTCT+GGG | + | chr2_2:1554979-1554998 | Msa0229720:intron | 45.0% | |
| ACAGCAGTTATCCCAGAGAA+TGG | - | chr2_2:1554993-1555012 | None:intergenic | 45.0% | |
| GCTGGATCATACTCTAGTAC+AGG | - | chr2_2:1555255-1555274 | None:intergenic | 45.0% | |
| ACTAGAGTATGATCCAGCTG+TGG | + | chr2_2:1555257-1555276 | Msa0229720:CDS | 45.0% | |
| ACAATCTGGACAGGAAATGG+TGG | + | chr2_2:1555317-1555336 | Msa0229720:CDS | 45.0% | |
| !!! | AAGCGATCAGTTTTGGGTAC+CGG | + | chr2_2:1555581-1555600 | Msa0229720:CDS | 45.0% |
| ! | AGGTGCCAAGCAAACTGTTT+TGG | + | chr2_2:1555613-1555632 | Msa0229720:CDS | 45.0% |
| ! | GGTGCCAAGCAAACTGTTTT+GGG | + | chr2_2:1555614-1555633 | Msa0229720:CDS | 45.0% |
| ATTGCCCTTGTGACTCTGTT+AGG | + | chr2_2:1555844-1555863 | Msa0229720:intron | 45.0% | |
| CTGACATGATTCTACAGGTC+TGG | - | chr2_2:1555937-1555956 | None:intergenic | 45.0% | |
| CCACTCATCTCAAAAGATGC+AGG | - | chr2_2:1556067-1556086 | None:intergenic | 45.0% | |
| !!! | CCTGCATCTTTTGAGATGAG+TGG | + | chr2_2:1556064-1556083 | Msa0229720:intron | 45.0% |
| ACAACCCTTCTAGTAAGGGA+TGG | + | chr2_2:1556466-1556485 | Msa0229720:intron | 45.0% | |
| GTTCTACATAGGACCAAGCA+AGG | - | chr2_2:1556514-1556533 | None:intergenic | 45.0% | |
| TAAATGGGTGTAGAGCATGG+TGG | - | chr2_2:1556618-1556637 | None:intergenic | 45.0% | |
| !! | TTTGGTTCTAGTTGGCCTTG+TGG | + | chr2_2:1556743-1556762 | Msa0229720:intron | 45.0% |
| CCTCTCAGTTTGCAACATGA+TGG | - | chr2_2:1556937-1556956 | None:intergenic | 45.0% | |
| CCATCATGTTGCAAACTGAG+AGG | + | chr2_2:1556934-1556953 | Msa0229720:CDS | 45.0% | |
| CCTGAAAACAGACAGTGAAG+AGG | - | chr2_2:1557296-1557315 | None:intergenic | 45.0% | |
| ! | CCTCTTCACTGTCTGTTTTC+AGG | + | chr2_2:1557293-1557312 | Msa0229720:intron | 45.0% |
| !! | ACTGTCTGTTTTCAGGCCAT+GGG | + | chr2_2:1557300-1557319 | Msa0229720:intron | 45.0% |
| !! | AAAGGCATCCGTTCTCATCA+GGG | - | chr2_2:1557549-1557568 | None:intergenic | 45.0% |
| !! | TAAAGGCATCCGTTCTCATC+AGG | - | chr2_2:1557550-1557569 | None:intergenic | 45.0% |
| GCCCAATTAAGTGAACTCAG+TGG | - | chr2_2:1557632-1557651 | None:intergenic | 45.0% | |
| AGTTCACTTAATTGGGCACC+AGG | + | chr2_2:1557635-1557654 | Msa0229720:intron | 45.0% | |
| GTTCACTTAATTGGGCACCA+GGG | + | chr2_2:1557636-1557655 | Msa0229720:intron | 45.0% | |
| ! | GTTTTTGCAGAATGCACCAC+AGG | + | chr2_2:1557741-1557760 | Msa0229720:intron | 45.0% |
| GCACAAGAAGCTTGCATTTC+TGG | + | chr2_2:1557882-1557901 | Msa0229720:CDS | 45.0% | |
| !! | CCTCTGAAGCTATACCAGAA+AGG | - | chr2_2:1557987-1558006 | None:intergenic | 45.0% |
| ! | CCTTTCTGGTATAGCTTCAG+AGG | + | chr2_2:1557984-1558003 | Msa0229720:three_prime_UTR | 45.0% |
| GACGTCGCGTTTACTAGGTT+GGG | - | chr2_2:1552825-1552844 | None:intergenic | 50.0% | |
| AACACGACGTCGCGTTTACT+AGG | - | chr2_2:1552830-1552849 | None:intergenic | 50.0% | |
| !! | CGGTTTGTTGAGAAGCTGTG+AGG | - | chr2_2:1552856-1552875 | None:intergenic | 50.0% |
| !! | GTCTTCGTTCTTCGGTGTCA+TGG | - | chr2_2:1552882-1552901 | None:intergenic | 50.0% |
| GTACACCGTCAGTGTTACGT+TGG | + | chr2_2:1552973-1552992 | Msa0229720:CDS | 50.0% | |
| ACCGTCAGTGTTACGTTGGA+AGG | + | chr2_2:1552977-1552996 | Msa0229720:CDS | 50.0% | |
| !! | ACCCGGGTTTTTCAACTCCA+TGG | + | chr2_2:1553060-1553079 | Msa0229720:CDS | 50.0% |
| AGGTTCAGGATCACGAGTGT+CGG | + | chr2_2:1553128-1553147 | Msa0229720:CDS | 50.0% | |
| GAAGCACAAACCCTAACACC+TGG | - | chr2_2:1553163-1553182 | None:intergenic | 50.0% | |
| TGTTAGGGTTTGTGCTTCGC+AGG | + | chr2_2:1553165-1553184 | Msa0229720:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr2_2:1554023-1554042 | Msa0229720:intron | 50.0% | |
| TCGGATCAAGAGAGACCTCA+AGG | - | chr2_2:1554437-1554456 | None:intergenic | 50.0% | |
| AGCCCAGCGACCAAAATGTA+AGG | - | chr2_2:1554735-1554754 | None:intergenic | 50.0% | |
| ATTCAAACATCTCTCGGGGG+AGG | + | chr2_2:1554805-1554824 | Msa0229720:intron | 50.0% | |
| ! | TAGCAGCAGCATCTAGGATC+AGG | + | chr2_2:1555012-1555031 | Msa0229720:intron | 50.0% |
| TGGTCACATGGGCCAAATGT+TGG | + | chr2_2:1555186-1555205 | Msa0229720:CDS | 50.0% | |
| ACTCTAGTACAGGCTGCACA+AGG | - | chr2_2:1555245-1555264 | None:intergenic | 50.0% | |
| TCCAGCTGTGGCTTCATTCT+TGG | + | chr2_2:1555269-1555288 | Msa0229720:CDS | 50.0% | |
| TCCAAGAATGAAGCCACAGC+TGG | - | chr2_2:1555273-1555292 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGTACTGCAACAC+AGG | + | chr2_2:1555333-1555352 | Msa0229720:CDS | 50.0% |
| ! | GTTTTCGCTGGAACTGGAGA+GGG | - | chr2_2:1555553-1555572 | None:intergenic | 50.0% |
| GGTACCCAAAACTGATCGCT+TGG | - | chr2_2:1555582-1555601 | None:intergenic | 50.0% | |
| !! | TTGGGTACCGGTTCTTCTGA+AGG | + | chr2_2:1555593-1555612 | Msa0229720:CDS | 50.0% |
| CTTGGCACCTTCAGAAGAAC+CGG | - | chr2_2:1555603-1555622 | None:intergenic | 50.0% | |
| ! | GGCACCCAAAACAGTTTGCT+TGG | - | chr2_2:1555621-1555640 | None:intergenic | 50.0% |
| TTGGGTGCCAGTTCTACTGA+AGG | + | chr2_2:1555671-1555690 | Msa0229720:CDS | 50.0% | |
| TGGGTGCCAGTTCTACTGAA+GGG | + | chr2_2:1555672-1555691 | Msa0229720:CDS | 50.0% | |
| CTCAAAAGATGCAGGGCAAG+AGG | - | chr2_2:1556059-1556078 | None:intergenic | 50.0% | |
| ! | AGTAAGGGATGGTCTTACCC+TGG | + | chr2_2:1556477-1556496 | Msa0229720:intron | 50.0% |
| ! | GTAAGGGATGGTCTTACCCT+GGG | + | chr2_2:1556478-1556497 | Msa0229720:intron | 50.0% |
| ! | ATGGTCTTACCCTGGGACTT+GGG | + | chr2_2:1556485-1556504 | Msa0229720:intron | 50.0% |
| ! | AGCATGGTGGAGAGCAAAGA+AGG | - | chr2_2:1556605-1556624 | None:intergenic | 50.0% |
| !! | CACTGTCTGTTTTCAGGCCA+TGG | + | chr2_2:1557299-1557318 | Msa0229720:intron | 50.0% |
| ! | AAGGCATCCGTTCTCATCAG+GGG | - | chr2_2:1557548-1557567 | None:intergenic | 50.0% |
| TAATCAAACTCTGCAGGCCC+TGG | - | chr2_2:1557656-1557675 | None:intergenic | 50.0% | |
| AGGGCCTGCAGAGTTTGATT+AGG | + | chr2_2:1557655-1557674 | Msa0229720:intron | 50.0% | |
| TGCGCCTAATCAAACTCTGC+AGG | - | chr2_2:1557662-1557681 | None:intergenic | 50.0% | |
| TTGCAGAATGCACCACAGGA+TGG | + | chr2_2:1557745-1557764 | Msa0229720:intron | 50.0% | |
| TCAAGACAGCCAGTGCTATG+AGG | + | chr2_2:1557821-1557840 | Msa0229720:CDS | 50.0% | |
| CAAGACAGCCAGTGCTATGA+GGG | + | chr2_2:1557822-1557841 | Msa0229720:CDS | 50.0% | |
| CGACGTCGCGTTTACTAGGT+TGG | - | chr2_2:1552826-1552845 | None:intergenic | 55.0% | |
| GGTTCAGGATCACGAGTGTC+GGG | + | chr2_2:1553129-1553148 | Msa0229720:CDS | 55.0% | |
| ! | GGAGCTGGTTCCAGGTGTTA+GGG | + | chr2_2:1553150-1553169 | Msa0229720:CDS | 55.0% |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr2_2:1554027-1554046 | Msa0229720:intron | 55.0% | |
| CAACTCTCGCGGTTAGTGTG+AGG | + | chr2_2:1554372-1554391 | Msa0229720:intron | 55.0% | |
| CTGCTGTAGCAGCAGCATCT+AGG | + | chr2_2:1555006-1555025 | Msa0229720:intron | 55.0% | |
| ! | CGTTTTCGCTGGAACTGGAG+AGG | - | chr2_2:1555554-1555573 | None:intergenic | 55.0% |
| TCCAGTTCCAGCGAAAACGC+CGG | + | chr2_2:1555555-1555574 | Msa0229720:intron | 55.0% | |
| CCAAAACTGATCGCTTGGCC+CGG | - | chr2_2:1555577-1555596 | None:intergenic | 55.0% | |
| ! | CGGGCCAAGCGATCAGTTTT+GGG | + | chr2_2:1555575-1555594 | Msa0229720:CDS | 55.0% |
| TTGGGTGCCAGTTCTCCTGA+AGG | + | chr2_2:1555632-1555651 | Msa0229720:CDS | 55.0% | |
| TGGGTGCCAGTTCTCCTGAA+GGG | + | chr2_2:1555633-1555652 | Msa0229720:CDS | 55.0% | |
| ! | AGGGGCCAAGCGATCTGTTT+TGG | + | chr2_2:1555652-1555671 | Msa0229720:CDS | 55.0% |
| ! | GGGGCCAAGCGATCTGTTTT+GGG | + | chr2_2:1555653-1555672 | Msa0229720:CDS | 55.0% |
| GGCACCCAAAACAGATCGCT+TGG | - | chr2_2:1555660-1555679 | None:intergenic | 55.0% | |
| GGGTGCCAGTTCTACTGAAG+GGG | + | chr2_2:1555673-1555692 | Msa0229720:CDS | 55.0% | |
| CTTGGCCCCTTCAGTAGAAC+TGG | - | chr2_2:1555681-1555700 | None:intergenic | 55.0% | |
| ! | AGGGGCCAAGCGATCTGTTT+TGG | + | chr2_2:1555652-1555671 | Msa0229720:CDS | 55.0% |
| ! | GGGGCCAAGCGATCTGTTTT+GGG | + | chr2_2:1555653-1555672 | Msa0229720:CDS | 55.0% |
| GGCACCCAAAACAGATCGCT+TGG | - | chr2_2:1555660-1555679 | None:intergenic | 55.0% | |
| TTGGGTGCCAGTTCTCCAGA+AGG | + | chr2_2:1555710-1555729 | Msa0229720:CDS | 55.0% | |
| ! | GATGGTCTTACCCTGGGACT+TGG | + | chr2_2:1556484-1556503 | Msa0229720:intron | 55.0% |
| TTGCAACATGATGGCACCCC+TGG | - | chr2_2:1556928-1556947 | None:intergenic | 55.0% | |
| !! | GGCTTTGGATCTGCAAGCCT+AGG | + | chr2_2:1557219-1557238 | Msa0229720:intron | 55.0% |
| TCCTGGTCCCCTGATGAGAA+CGG | + | chr2_2:1557538-1557557 | Msa0229720:intron | 55.0% | |
| ! | GGGAGCTGGTTCCAGGTGTT+AGG | + | chr2_2:1553149-1553168 | Msa0229720:CDS | 60.0% |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr2_2:1554026-1554045 | Msa0229720:intron | 60.0% | |
| CCAGTTCCAGCGAAAACGCC+GGG | + | chr2_2:1555556-1555575 | Msa0229720:intron | 60.0% | |
| ! | CCGGGCCAAGCGATCAGTTT+TGG | + | chr2_2:1555574-1555593 | Msa0229720:CDS | 60.0% |
| GGGTGCCAGTTCTCCTGAAG+GGG | + | chr2_2:1555634-1555653 | Msa0229720:CDS | 60.0% | |
| CTTGGCCCCTTCAGGAGAAC+TGG | - | chr2_2:1555642-1555661 | None:intergenic | 60.0% | |
| ACAGATCGCTTGGCCCCTTC+AGG | - | chr2_2:1555650-1555669 | None:intergenic | 60.0% | |
| GCAAGGTCTCCCAAGTCCCA+GGG | - | chr2_2:1556497-1556516 | None:intergenic | 60.0% | |
| AGCAAGGTCTCCCAAGTCCC+AGG | - | chr2_2:1556498-1556517 | None:intergenic | 60.0% | |
| GGGACTTGGGAGACCTTGCT+TGG | + | chr2_2:1556498-1556517 | Msa0229720:intron | 60.0% | |
| AGAGCATGGCCGACCAACTG+AGG | + | chr2_2:1557460-1557479 | Msa0229720:intron | 60.0% | |
| TCCGTTCTCATCAGGGGACC+AGG | - | chr2_2:1557542-1557561 | None:intergenic | 60.0% | |
| GCTTCTTGTGCAGCCGCTCT+TGG | - | chr2_2:1557873-1557892 | None:intergenic | 60.0% | |
| !! | GGATCACGAGTGTCGGGAGC+TGG | + | chr2_2:1553135-1553154 | Msa0229720:CDS | 65.0% |
| !! | GAGTGTCGGGAGCTGGTTCC+AGG | + | chr2_2:1553142-1553161 | Msa0229720:CDS | 65.0% |
| ! | CCCGGCGTTTTCGCTGGAAC+TGG | - | chr2_2:1555559-1555578 | None:intergenic | 65.0% |
| ! | GCTTGGCCCGGCGTTTTCGC+TGG | - | chr2_2:1555565-1555584 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1552719 | 1558177 | 1552719 | ID=Msa0229720;Name=Msa0229720 |
| chr2_2 | mRNA | 1552719 | 1558177 | 1552719 | ID=Msa0229720-mRNA-1;Parent=Msa0229720;Name=Msa0229720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|1|1|6|250|475 |
| chr2_2 | exon | 1552719 | 1553234 | 1552719 | ID=Msa0229720-mRNA-1:exon:484;Parent=Msa0229720-mRNA-1 |
| chr2_2 | exon | 1555123 | 1555425 | 1555123 | ID=Msa0229720-mRNA-1:exon:485;Parent=Msa0229720-mRNA-1 |
| chr2_2 | exon | 1555560 | 1555731 | 1555560 | ID=Msa0229720-mRNA-1:exon:486;Parent=Msa0229720-mRNA-1 |
| chr2_2 | exon | 1556754 | 1557021 | 1556754 | ID=Msa0229720-mRNA-1:exon:487;Parent=Msa0229720-mRNA-1 |
| chr2_2 | exon | 1557315 | 1557393 | 1557315 | ID=Msa0229720-mRNA-1:exon:488;Parent=Msa0229720-mRNA-1 |
| chr2_2 | exon | 1557751 | 1558177 | 1557751 | ID=Msa0229720-mRNA-1:exon:489;Parent=Msa0229720-mRNA-1 |
| chr2_2 | five_prime_UTR | 1552719 | 1552805 | 1552719 | ID=Msa0229720-mRNA-1:five_prime_utr;Parent=Msa0229720-mRNA-1 |
| chr2_2 | CDS | 1552806 | 1553234 | 1552806 | ID=Msa0229720-mRNA-1:cds;Parent=Msa0229720-mRNA-1 |
| chr2_2 | CDS | 1555123 | 1555425 | 1555123 | ID=Msa0229720-mRNA-1:cds;Parent=Msa0229720-mRNA-1 |
| chr2_2 | CDS | 1555560 | 1555731 | 1555560 | ID=Msa0229720-mRNA-1:cds;Parent=Msa0229720-mRNA-1 |
| chr2_2 | CDS | 1556754 | 1557021 | 1556754 | ID=Msa0229720-mRNA-1:cds;Parent=Msa0229720-mRNA-1 |
| chr2_2 | CDS | 1557315 | 1557393 | 1557315 | ID=Msa0229720-mRNA-1:cds;Parent=Msa0229720-mRNA-1 |
| chr2_2 | CDS | 1557751 | 1557927 | 1557751 | ID=Msa0229720-mRNA-1:cds;Parent=Msa0229720-mRNA-1 |
| chr2_2 | three_prime_UTR | 1557928 | 1558177 | 1557928 | ID=Msa0229720-mRNA-1:three_prime_utr;Parent=Msa0229720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
