Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387700 | XP_003601531.2 | 89.852 | 473 | 35 | 1 | 3 | 462 | 10 | 482 | 0.0 | 878 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387700 | G7J8V1 | 89.852 | 473 | 35 | 1 | 3 | 462 | 10 | 482 | 0.0 | 878 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024680 | Msa0387700 | 0.801948 | 7.074989e-49 | -8.615850e-47 |
| Msa0027540 | Msa0387700 | 0.809455 | 1.876557e-50 | -8.615850e-47 |
| Msa0044710 | Msa0387700 | 0.803818 | 2.907786e-49 | -8.615850e-47 |
| Msa0049400 | Msa0387700 | -0.810264 | 1.256599e-50 | -8.615850e-47 |
| Msa0075310 | Msa0387700 | 0.811652 | 6.289757e-51 | -8.615850e-47 |
| Msa0120330 | Msa0387700 | 0.804535 | 2.062289e-49 | -8.615850e-47 |
| Msa0143240 | Msa0387700 | -0.820648 | 6.137178e-53 | -8.615850e-47 |
| Msa0147000 | Msa0387700 | -0.801055 | 1.078736e-48 | -8.615850e-47 |
| Msa0168100 | Msa0387700 | 0.821181 | 4.627435e-53 | -8.615850e-47 |
| Msa0183610 | Msa0387700 | 0.810565 | 1.082224e-50 | -8.615850e-47 |
| Msa0183620 | Msa0387700 | 0.835153 | 1.980375e-56 | -8.615850e-47 |
| Msa0188680 | Msa0387700 | -0.802459 | 5.555098e-49 | -8.615850e-47 |
| Msa0207000 | Msa0387700 | 0.814697 | 1.350331e-51 | -8.615850e-47 |
| Msa0229720 | Msa0387700 | 0.836184 | 1.085591e-56 | -8.615850e-47 |
| Msa0378080 | Msa0387700 | 0.804277 | 2.333375e-49 | -8.615850e-47 |
| Msa0387670 | Msa0387700 | 0.943891 | 5.294183e-103 | -8.615850e-47 |
| Msa0387700 | Msa0387760 | 0.878707 | 2.258200e-69 | -8.615850e-47 |
| Msa0387700 | Msa0414950 | -0.809499 | 1.836004e-50 | -8.615850e-47 |
| Msa0387700 | Msa0423360 | -0.831968 | 1.235318e-55 | -8.615850e-47 |
| Msa0387700 | Msa0424920 | 0.816963 | 4.216134e-52 | -8.615850e-47 |
| Msa0387700 | Msa0431430 | 0.815059 | 1.122224e-51 | -8.615850e-47 |
| Msa0387700 | Msa0437710 | 0.802853 | 4.606543e-49 | -8.615850e-47 |
| Msa0387700 | Msa0469910 | -0.814265 | 1.682561e-51 | -8.615850e-47 |
| Msa0387700 | Msa0480320 | 0.801361 | 9.335324e-49 | -8.615850e-47 |
| Msa0387700 | Msa0509970 | 0.807264 | 5.502881e-50 | -8.615850e-47 |
| Msa0387700 | Msa0521880 | 0.803053 | 4.187357e-49 | -8.615850e-47 |
| Msa0387700 | Msa0535030 | 0.808560 | 2.916702e-50 | -8.615850e-47 |
| Msa0387700 | Msa0535060 | 0.807908 | 4.015971e-50 | -8.615850e-47 |
| Msa0387700 | Msa0591770 | 0.823181 | 1.590252e-53 | -8.615850e-47 |
| Msa0387700 | Msa0669850 | 0.811857 | 5.675069e-51 | -8.615850e-47 |
| Msa0387700 | Msa0670980 | 0.819884 | 9.184733e-53 | -8.615850e-47 |
| Msa0387700 | Msa0681890 | 0.808624 | 2.826417e-50 | -8.615850e-47 |
| Msa0387700 | Msa0730180 | 0.800076 | 1.707493e-48 | -8.615850e-47 |
| Msa0387700 | Msa0760380 | 0.804963 | 1.678580e-49 | -8.615850e-47 |
| Msa0387700 | Msa0792790 | -0.812986 | 3.217175e-51 | -8.615850e-47 |
| Msa0387700 | Msa0837990 | 0.802121 | 6.521021e-49 | -8.615850e-47 |
| Msa0387700 | Msa0883030 | 0.805722 | 1.163505e-49 | -8.615850e-47 |
| Msa0387700 | Msa0890250 | 0.818724 | 1.688478e-52 | -8.615850e-47 |
| Msa0387700 | Msa0981820 | -0.803648 | 3.152892e-49 | -8.615850e-47 |
| Msa0387700 | Msa1012700 | 0.822885 | 1.864793e-53 | -8.615850e-47 |
| Msa0387700 | Msa1037000 | 0.819259 | 1.276067e-52 | -8.615850e-47 |
| Msa0387700 | Msa1044340 | 0.821692 | 3.527766e-53 | -8.615850e-47 |
| Msa0387700 | Msa1115330 | 0.806117 | 9.614099e-50 | -8.615850e-47 |
| Msa0387700 | Msa1129560 | 0.802237 | 6.171806e-49 | -8.615850e-47 |
| Msa0387700 | Msa1193950 | -0.803811 | 2.916350e-49 | -8.615850e-47 |
| Msa0387700 | Msa1221560 | 0.809250 | 2.076730e-50 | -8.615850e-47 |
| Msa0387700 | Msa1223460 | 0.804268 | 2.343271e-49 | -8.615850e-47 |
| Msa0387700 | Msa1237030 | 0.814311 | 1.643880e-51 | -8.615850e-47 |
| Msa0387700 | Msa1242330 | 0.829712 | 4.416118e-55 | -8.615850e-47 |
| Msa0387700 | Msa1263660 | 0.830914 | 2.244972e-55 | -8.615850e-47 |
| Msa0387700 | Msa1265960 | 0.803514 | 3.361435e-49 | -8.615850e-47 |
| Msa0387700 | Msa1342430 | 0.801847 | 7.422116e-49 | -8.615850e-47 |
| Msa0387700 | Msa1382310 | 0.800823 | 1.202615e-48 | -8.615850e-47 |
| Msa0387700 | Msa1385900 | 0.816738 | 4.736843e-52 | -8.615850e-47 |
| Msa0387700 | Msa1390310 | 0.802622 | 5.141685e-49 | -8.615850e-47 |
| Msa0387700 | Msa1398480 | 0.801442 | 8.986150e-49 | -8.615850e-47 |
| Msa0387700 | Msa1449880 | 0.815770 | 7.799293e-52 | -8.615850e-47 |
| Msa0387700 | Msa1463970 | 0.816405 | 5.625677e-52 | -8.615850e-47 |
| Msa0267760 | Msa0387700 | 0.805309 | 1.420661e-49 | -8.615850e-47 |
| Msa0272480 | Msa0387700 | -0.811834 | 5.742052e-51 | -8.615850e-47 |
| Msa0288240 | Msa0387700 | 0.801465 | 8.890297e-49 | -8.615850e-47 |
| Msa0296760 | Msa0387700 | 0.800513 | 1.391621e-48 | -8.615850e-47 |
| Msa0342200 | Msa0387700 | 0.820081 | 8.279362e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387700 | MtrunA17_Chr3g0120771 | 89.852 | 473 | 35 | 1 | 3 | 462 | 10 | 482 | 0.0 | 878 |
| Msa0387700 | MtrunA17_Chr3g0120781 | 69.528 | 466 | 97 | 6 | 1 | 462 | 1 | 425 | 0.0 | 640 |
| Msa0387700 | MtrunA17_Chr6g0466721 | 67.529 | 425 | 101 | 3 | 38 | 462 | 5 | 392 | 0.0 | 573 |
| Msa0387700 | MtrunA17_Chr6g0466711 | 82.022 | 89 | 16 | 0 | 292 | 380 | 1 | 89 | 1.20e-46 | 156 |
| Msa0387700 | MtrunA17_Chr6g0466701 | 61.538 | 117 | 45 | 0 | 28 | 144 | 4 | 120 | 7.28e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387700 | AT4G25330.1 | 35.028 | 177 | 105 | 3 | 47 | 221 | 37 | 205 | 4.41e-28 | 111 |
Find 107 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGAAGCTTGCATTTC+TGG | 0.094771 | 3_1:+91774007 | Msa0387700:CDS |
| ATTTGTTAATATAACCTTTC+TGG | 0.146623 | 3_1:+91774095 | Msa0387700:three_prime_UTR |
| ACCTCTTTCTGTTCAGGTTC+AGG | 0.218482 | 3_1:+91769349 | Msa0387700:CDS |
| AGGGGCCAAGCGATCTGTTT+TGG | 0.228672 | 3_1:+91771811 | Msa0387700:CDS |
| TAGAAGCTTACCTCAGATTT+AGG | 0.228922 | 3_1:-91773507 | None:intergenic |
| GAGTGTCGGGAGCTGGTTCC+AGG | 0.263329 | 3_1:+91769377 | Msa0387700:CDS |
| TCCAGCTGTGGCTTCATTCT+TGG | 0.270435 | 3_1:+91771440 | Msa0387700:CDS |
| GGGAGCTGGTTCCAGGTGTT+AGG | 0.277062 | 3_1:+91769384 | Msa0387700:CDS |
| GTTCAGACCTCTTTCTGTTC+AGG | 0.329497 | 3_1:+91769343 | Msa0387700:CDS |
| ACAGATCGCTTGGCCCCTTC+AGG | 0.329863 | 3_1:-91771806 | None:intergenic |
| CCGGGCCAAGCGATCTGCTT+TGG | 0.343279 | 3_1:+91771733 | Msa0387700:CDS |
| AACTGCATGTCTTCGTTCTT+CGG | 0.352064 | 3_1:-91769122 | None:intergenic |
| GCTTCTTGTGCAGCCGCTCT+TGG | 0.359019 | 3_1:-91773995 | None:intergenic |
| TGCTATGAGGGATTTGTATT+CGG | 0.359680 | 3_1:+91773959 | Msa0387700:CDS |
| GAAGATGTTATGATGTGTTT+TGG | 0.362413 | 3_1:-91773115 | None:intergenic |
| AGGTGCCAAGCAAACTGTTT+TGG | 0.365249 | 3_1:+91771772 | Msa0387700:CDS |
| GTTCTTCGGTGTCATGGTTT+CGG | 0.382444 | 3_1:-91769108 | None:intergenic |
| AACACGACGTCGCGTTTACT+AGG | 0.389994 | 3_1:-91769062 | None:intergenic |
| CGGGCCAAGCGATCTGCTTT+GGG | 0.402287 | 3_1:+91771734 | Msa0387700:CDS |
| AAACAAACCTTCTGGAGAAC+TGG | 0.407449 | 3_1:-91771837 | None:intergenic |
| AATCTGAAACTAGGTTCTAT+AGG | 0.409162 | 3_1:+91774046 | Msa0387700:exon |
| ATCACAATCTGGACAGGAAA+TGG | 0.411738 | 3_1:+91771485 | Msa0387700:CDS |
| AAGCGATCTGCTTTGGGTAC+CGG | 0.422438 | 3_1:+91771740 | Msa0387700:CDS |
| TTCTTCACTAAGCGTTGAAA+TGG | 0.422515 | 3_1:+91769022 | Msa0387700:exon |
| TGTGTACCTTTATACTGTCT+TGG | 0.424257 | 3_1:+91771337 | Msa0387700:CDS |
| CTTGGCCCCTTCAGGAGAAC+TGG | 0.425769 | 3_1:-91771798 | None:intergenic |
| GTCTTCGTTCTTCGGTGTCA+TGG | 0.427189 | 3_1:-91769114 | None:intergenic |
| CTTGGCACCTTCAGAAGAAC+CGG | 0.448227 | 3_1:-91771759 | None:intergenic |
| CGTTTATGAAATCTGAAACT+AGG | 0.452229 | 3_1:+91774037 | Msa0387700:exon |
| TTGGGTACCGGTTCTTCTGA+AGG | 0.454916 | 3_1:+91771752 | Msa0387700:CDS |
| GGAGCTGGTTCCAGGTGTTA+GGG | 0.455064 | 3_1:+91769385 | Msa0387700:CDS |
| CGACGTCGCGTTTACTAGGT+TGG | 0.457333 | 3_1:-91769058 | None:intergenic |
| CTTCATTCTTGGATATTACA+AGG | 0.457723 | 3_1:+91771451 | Msa0387700:CDS |
| CACATCATAACATCTTCAAC+TGG | 0.458653 | 3_1:+91773121 | Msa0387700:CDS |
| CTATGATGCTGTTGTTGATA+CGG | 0.460810 | 3_1:+91769448 | Msa0387700:CDS |
| TTTATACTGTCTTGGTCACA+TGG | 0.463500 | 3_1:+91771345 | Msa0387700:CDS |
| TGTTAGGGTTTGTGCTTCGC+AGG | 0.469050 | 3_1:+91769400 | Msa0387700:CDS |
| ATTTCAACGCTTAGTGAAGA+AGG | 0.472561 | 3_1:-91769020 | None:intergenic |
| GGTTCAGGATCACGAGTGTC+GGG | 0.473562 | 3_1:+91769364 | Msa0387700:CDS |
| TGGGTGCCAGTTCTCCTGAA+GGG | 0.474895 | 3_1:+91771792 | Msa0387700:CDS |
| GGCACCCAAAACAGTTTGCT+TGG | 0.478020 | 3_1:-91771777 | None:intergenic |
| TTGGGTGCCAGTTCTCCTGA+AGG | 0.480310 | 3_1:+91771791 | Msa0387700:CDS |
| AAATGTGTGCATGATATTGA+TGG | 0.487824 | 3_1:+91772916 | Msa0387700:CDS |
| ATGGTGGTGTACTGCAACAC+AGG | 0.488051 | 3_1:+91771504 | Msa0387700:CDS |
| GACGTCGCGTTTACTAGGTT+GGG | 0.496512 | 3_1:-91769057 | None:intergenic |
| ATGTGACCAAGACAGTATAA+AGG | 0.500143 | 3_1:-91771343 | None:intergenic |
| GGGTGCCAGTTCTCCTGAAG+GGG | 0.503685 | 3_1:+91771793 | Msa0387700:CDS |
| TCCAAGAATGAAGCCACAGC+TGG | 0.503907 | 3_1:-91771441 | None:intergenic |
| ATTGATAATTTGTTCGAACC+AGG | 0.505158 | 3_1:+91769278 | Msa0387700:CDS |
| TATATCTCCGATGATAAACT+TGG | 0.509755 | 3_1:-91773025 | None:intergenic |
| TTGCAACATGATGGCACCCC+TGG | 0.509975 | 3_1:-91773050 | None:intergenic |
| TCCTGAACCTGAACAGAAAG+AGG | 0.511183 | 3_1:-91769350 | None:intergenic |
| TCAAGACAGCCAGTGCTATG+AGG | 0.513042 | 3_1:+91773946 | Msa0387700:CDS |
| CCAGTTCCAGCGAAAACGCC+GGG | 0.514093 | 3_1:+91771715 | Msa0387700:intron |
| GGATCACGAGTGTCGGGAGC+TGG | 0.515386 | 3_1:+91769370 | Msa0387700:CDS |
| TTGGGTGCCAGTTCTCCAGA+AGG | 0.516886 | 3_1:+91771830 | Msa0387700:CDS |
| AGGAGAATAGAATCACAATC+TGG | 0.519936 | 3_1:+91771474 | Msa0387700:CDS |
| GGCACCCAAAACAGATCGCT+TGG | 0.520400 | 3_1:-91771816 | None:intergenic |
| CCAAAGCAGATCGCTTGGCC+CGG | 0.521826 | 3_1:-91771733 | None:intergenic |
| TGGTCACATGGGCCAAATGT+TGG | 0.523682 | 3_1:+91771357 | Msa0387700:CDS |
| CAAGACAGCCAGTGCTATGA+GGG | 0.525996 | 3_1:+91773947 | Msa0387700:CDS |
| CCTTTCTGGTATAGCTTCAG+AGG | 0.531149 | 3_1:+91774109 | Msa0387700:three_prime_UTR |
| AATAGAATCACAATCTGGAC+AGG | 0.535018 | 3_1:+91771479 | Msa0387700:CDS |
| ACCGTCAGTGTTACGTTGGA+AGG | 0.536971 | 3_1:+91769212 | Msa0387700:CDS |
| AAACTCTTGAAGATCTTCCA+TGG | 0.540550 | 3_1:-91769312 | None:intergenic |
| CCTCTCAGTTTGCAACATGA+TGG | 0.545960 | 3_1:-91773059 | None:intergenic |
| AGGTTCAGGATCACGAGTGT+CGG | 0.549905 | 3_1:+91769363 | Msa0387700:CDS |
| ACTGCATGGATTCTTATCTC+AGG | 0.550248 | 3_1:-91774176 | None:intergenic |
| GGTACCCAAAGCAGATCGCT+TGG | 0.552676 | 3_1:-91771738 | None:intergenic |
| ACTTTACTCTTTCCATCCTG+TGG | 0.553303 | 3_1:-91773882 | None:intergenic |
| TCCAGTTCCAGCGAAAACGC+CGG | 0.556318 | 3_1:+91771714 | Msa0387700:intron |
| GCTGGATCATACTCTAGTAC+AGG | 0.562859 | 3_1:-91771423 | None:intergenic |
| TTTGGTTCTAGTTGGCCTTG+TGG | 0.567369 | 3_1:+91772868 | Msa0387700:intron |
| TCATAACATCTTCAACTGGC+AGG | 0.567554 | 3_1:+91773125 | Msa0387700:CDS |
| ATACAAATCCCTCATAGCAC+TGG | 0.572442 | 3_1:-91773955 | None:intergenic |
| CGGTTTGTTGAGAAGCTGTG+AGG | 0.573005 | 3_1:-91769088 | None:intergenic |
| TAAAATTGAAAGTGACTGCA+TGG | 0.579793 | 3_1:-91774190 | None:intergenic |
| CCTCTGAAGCTATACCAGAA+AGG | 0.582930 | 3_1:-91774109 | None:intergenic |
| AATTTGAAGATTGTTTACTC+AGG | 0.585845 | 3_1:+91773912 | Msa0387700:CDS |
| GTAACTACGAAGATGACGCT+TGG | 0.588473 | 3_1:+91769186 | Msa0387700:CDS |
| TTGATAATTTGTTCGAACCA+GGG | 0.593655 | 3_1:+91769279 | Msa0387700:CDS |
| TCCTTCCAACGTAACACTGA+CGG | 0.597934 | 3_1:-91769213 | None:intergenic |
| AAGAAGCTTGCATTTCTGGA+AGG | 0.597936 | 3_1:+91774011 | Msa0387700:CDS |
| CATCATGTTGCAAACTGAGA+GGG | 0.605805 | 3_1:+91773060 | Msa0387700:CDS |
| ATCTTCGTAGTTACGAAACT+CGG | 0.607772 | 3_1:-91769177 | None:intergenic |
| GGTTTGTTGAGAAGCTGTGA+GGG | 0.608654 | 3_1:-91769087 | None:intergenic |
| GTTAATCGTTCACGAACAGA+AGG | 0.610755 | 3_1:+91769142 | Msa0387700:CDS |
| TTTCAACGCTTAGTGAAGAA+GGG | 0.612132 | 3_1:-91769019 | None:intergenic |
| TTGCAGAATGCACCACAGGA+TGG | 0.615727 | 3_1:+91773870 | Msa0387700:intron |
| AACGCTGTTTCCTAAATCTG+AGG | 0.616710 | 3_1:+91773497 | Msa0387700:CDS |
| ATGGATTCTTATCTCAGGTG+AGG | 0.617937 | 3_1:-91774171 | None:intergenic |
| TATCATCGGAGATATATACC+AGG | 0.620834 | 3_1:+91773032 | Msa0387700:CDS |
| AATGTGTGCATGATATTGAT+GGG | 0.634957 | 3_1:+91772917 | Msa0387700:CDS |
| CCATCATGTTGCAAACTGAG+AGG | 0.636376 | 3_1:+91773059 | Msa0387700:CDS |
| TCAACTCTTTATCTTCCACA+AGG | 0.640133 | 3_1:-91772883 | None:intergenic |
| GAAGCACAAACCCTAACACC+TGG | 0.649009 | 3_1:-91769395 | None:intergenic |
| GTACACCGTCAGTGTTACGT+TGG | 0.658687 | 3_1:+91769208 | Msa0387700:CDS |
| ACTCTAGTACAGGCTGCACA+AGG | 0.661177 | 3_1:-91771413 | None:intergenic |
| ATCTTCAAGAGTTTGAGACA+CGG | 0.662272 | 3_1:+91769321 | Msa0387700:CDS |
| ATCATCGGAGATATATACCA+GGG | 0.663531 | 3_1:+91773033 | Msa0387700:CDS |
| CAACAGCATCATAGAAACGA+AGG | 0.663670 | 3_1:-91769439 | None:intergenic |
| ACAATCTGGACAGGAAATGG+TGG | 0.671026 | 3_1:+91771488 | Msa0387700:CDS |
| TTATACTGTCTTGGTCACAT+GGG | 0.673466 | 3_1:+91771346 | Msa0387700:CDS |
| AATTTGCTGATCACCAAGAG+CGG | 0.685810 | 3_1:+91773982 | Msa0387700:CDS |
| CATTCTTGGATATTACAAGG+AGG | 0.704872 | 3_1:+91771454 | Msa0387700:CDS |
| ACTAGAGTATGATCCAGCTG+TGG | 0.711810 | 3_1:+91771428 | Msa0387700:CDS |
| TCATCGGAGATATATACCAG+GGG | 0.730219 | 3_1:+91773034 | Msa0387700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTATTTTATTT+TGG | + | chr3_1:91769630-91769649 | Msa0387700:intron | 0.0% |
| !! | TAATGAAGTTAAATATTATT+GGG | + | chr3_1:91769581-91769600 | Msa0387700:intron | 10.0% |
| !! | CATTAAATAATTTATGTATT+TGG | + | chr3_1:91769846-91769865 | Msa0387700:intron | 10.0% |
| !! | TGTAATTAAATAATCTATTA+GGG | - | chr3_1:91770686-91770705 | None:intergenic | 10.0% |
| !!! | TTATTTTTGTTATTTACTAT+CGG | + | chr3_1:91773209-91773228 | Msa0387700:intron | 10.0% |
| !! | AATAAAAAACAAAAAAGATT+GGG | - | chr3_1:91774216-91774235 | None:intergenic | 10.0% |
| !! | AAATAAAAAACAAAAAAGAT+TGG | - | chr3_1:91774217-91774236 | None:intergenic | 10.0% |
| !! | GTAATGAAGTTAAATATTAT+TGG | + | chr3_1:91769580-91769599 | Msa0387700:intron | 15.0% |
| !! | AATGAAGTTAAATATTATTG+GGG | + | chr3_1:91769582-91769601 | Msa0387700:intron | 15.0% |
| !!! | ATAATTTATGTATTTGGTTT+AGG | + | chr3_1:91769852-91769871 | Msa0387700:intron | 15.0% |
| !! | ATAACTAAGTACTTATAATA+TGG | + | chr3_1:91770186-91770205 | Msa0387700:intron | 15.0% |
| !!! | TTAAAATTTTGATACATTGA+AGG | + | chr3_1:91770338-91770357 | Msa0387700:intron | 15.0% |
| !! | TAATTAAATGCATACATTAA+TGG | + | chr3_1:91770422-91770441 | Msa0387700:intron | 15.0% |
| !! | AATTAAATGCATACATTAAT+GGG | + | chr3_1:91770423-91770442 | Msa0387700:intron | 15.0% |
| !! | GTAATTAAATAATCTATTAG+GGG | - | chr3_1:91770685-91770704 | None:intergenic | 15.0% |
| !! | GTGTAATTAAATAATCTATT+AGG | - | chr3_1:91770687-91770706 | None:intergenic | 15.0% |
| !!! | ATATTTTATTATGCAAAAAG+TGG | + | chr3_1:91770848-91770867 | Msa0387700:intron | 15.0% |
| !! | AATAATAAAATTCTAAGTGT+TGG | - | chr3_1:91772020-91772039 | None:intergenic | 15.0% |
| !! | ATAACAATTATGATAAGTAA+CGG | - | chr3_1:91772475-91772494 | None:intergenic | 15.0% |
| !! | AGTAGATAAAAATGATAAAT+GGG | - | chr3_1:91772758-91772777 | None:intergenic | 15.0% |
| !! | AAGTAGATAAAAATGATAAA+TGG | - | chr3_1:91772759-91772778 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTATCTACTT+TGG | + | chr3_1:91772759-91772778 | Msa0387700:intron | 15.0% |
| !! | CTTTGTTAAAATTATAACTT+AGG | - | chr3_1:91773269-91773288 | None:intergenic | 15.0% |
| !! | AAAATGCTAAAAACTGAAAA+TGG | - | chr3_1:91769515-91769534 | None:intergenic | 20.0% |
| !!! | GTAAATTGTTTCTTGTAAAT+AGG | - | chr3_1:91769816-91769835 | None:intergenic | 20.0% |
| !! | TATATGAAAAGAGTTAATGT+CGG | - | chr3_1:91770151-91770170 | None:intergenic | 20.0% |
| !! | AAAATGTAAGGTATAAAATG+TGG | - | chr3_1:91770894-91770913 | None:intergenic | 20.0% |
| !!! | ACATTTTATACCTTACATTT+TGG | + | chr3_1:91770893-91770912 | Msa0387700:intron | 20.0% |
| !! | TTTAATATGTTTGACATTAG+AGG | + | chr3_1:91771013-91771032 | Msa0387700:intron | 20.0% |
| !! | TTAATATGTTTGACATTAGA+GGG | + | chr3_1:91771014-91771033 | Msa0387700:intron | 20.0% |
| !!! | TGTGAAATTGATGTTTTTAT+AGG | + | chr3_1:91771272-91771291 | Msa0387700:intron | 20.0% |
| !! | AATAAAAACTAAGAGCAAAA+TGG | + | chr3_1:91771551-91771570 | Msa0387700:CDS | 20.0% |
| !! | ATAAAAACTAAGAGCAAAAT+GGG | + | chr3_1:91771552-91771571 | Msa0387700:CDS | 20.0% |
| !! | AAATAGCAGTATATGATTAT+TGG | + | chr3_1:91771657-91771676 | Msa0387700:intron | 20.0% |
| !!! | AAAAAATGTAGTAGTTTTTC+TGG | + | chr3_1:91772258-91772277 | Msa0387700:intron | 20.0% |
| !! | ACAACATAAATAAATGGTAA+TGG | - | chr3_1:91772406-91772425 | None:intergenic | 20.0% |
| !! | TACCATTTATTTATGTTGTT+CGG | + | chr3_1:91772407-91772426 | Msa0387700:intron | 20.0% |
| !!! | AAAGTTATTACCTTTTAAGT+AGG | - | chr3_1:91772503-91772522 | None:intergenic | 20.0% |
| !!! | AAAAATATCAAAGCATCAAT+AGG | + | chr3_1:91773474-91773493 | Msa0387700:CDS | 20.0% |
| !! | CTAAGAATAATTTAATAGCA+TGG | + | chr3_1:91773558-91773577 | Msa0387700:intron | 20.0% |
| !! | AATAAGGATTACATATGTAA+AGG | - | chr3_1:91773692-91773711 | None:intergenic | 20.0% |
| !!! | ATTTGTTAATATAACCTTTC+TGG | + | chr3_1:91774095-91774114 | Msa0387700:three_prime_UTR | 20.0% |
| !! | TTTTCATTTCAGACATTGAT+TGG | + | chr3_1:91769687-91769706 | Msa0387700:intron | 25.0% |
| !!! | GTCAACTTTTTCTTGTAATT+AGG | + | chr3_1:91769915-91769934 | Msa0387700:intron | 25.0% |
| !!! | TTTAGTCTTAAATGTGTAAC+CGG | + | chr3_1:91770032-91770051 | Msa0387700:intron | 25.0% |
| !! | AAGCATAGATTTTACAAAAG+AGG | + | chr3_1:91770940-91770959 | Msa0387700:intron | 25.0% |
| ! | TAATATGTTTGACATTAGAG+GGG | + | chr3_1:91771015-91771034 | Msa0387700:intron | 25.0% |
| ! | TGTAATTTAAGCATCTCTTA+TGG | + | chr3_1:91771046-91771065 | Msa0387700:intron | 25.0% |
| ! | GTAATTTAAGCATCTCTTAT+GGG | + | chr3_1:91771047-91771066 | Msa0387700:intron | 25.0% |
| !!! | TCTTAGTTTTTATTTCAGTG+TGG | - | chr3_1:91771545-91771564 | None:intergenic | 25.0% |
| !!! | TTATTTTGAACGAATGCAAA+AGG | + | chr3_1:91771575-91771594 | Msa0387700:CDS | 25.0% |
| ! | CATTGATACTGTAAAATTGT+TGG | + | chr3_1:91772126-91772145 | Msa0387700:intron | 25.0% |
| ! | ATCCGAACAACATAAATAAA+TGG | - | chr3_1:91772412-91772431 | None:intergenic | 25.0% |
| !!! | TCATTGTTTCTCTTTTTCTT+CGG | + | chr3_1:91772431-91772450 | Msa0387700:intron | 25.0% |
| ! | AGTTTATTTGAACATGCATA+AGG | - | chr3_1:91772699-91772718 | None:intergenic | 25.0% |
| !!! | TCCTCAGTTTTTCAAATTTT+TGG | + | chr3_1:91772850-91772869 | Msa0387700:intron | 25.0% |
| ! | ACCAAAAATTTGAAAAACTG+AGG | - | chr3_1:91772854-91772873 | None:intergenic | 25.0% |
| !!! | TTCAAATTTTTGGTTCTAGT+TGG | + | chr3_1:91772860-91772879 | Msa0387700:intron | 25.0% |
| !! | CATTTTTCCAAGTTTATCAT+CGG | + | chr3_1:91773018-91773037 | Msa0387700:CDS | 25.0% |
| !!! | ATAATTTTAACAAAGCTTCC+AGG | + | chr3_1:91773274-91773293 | Msa0387700:intron | 25.0% |
| ! | GTGATAATTGAAAAACAAGT+GGG | + | chr3_1:91773447-91773466 | Msa0387700:CDS | 25.0% |
| ! | ATTATTCTTAGTCAGAAAAG+AGG | - | chr3_1:91773549-91773568 | None:intergenic | 25.0% |
| ! | ATTAAAACTACAAAGTTAGC+TGG | - | chr3_1:91773723-91773742 | None:intergenic | 25.0% |
| ! | AATTTGAAGATTGTTTACTC+AGG | + | chr3_1:91773912-91773931 | Msa0387700:CDS | 25.0% |
| !! | GTGTTTCATATACAATTTTG+CGG | + | chr3_1:91774071-91774090 | Msa0387700:three_prime_UTR | 25.0% |
| !! | TGTTTCATATACAATTTTGC+GGG | + | chr3_1:91774072-91774091 | Msa0387700:three_prime_UTR | 25.0% |
| ATCTCTCTCTACAAAAACAA+AGG | + | chr3_1:91768970-91768989 | Msa0387700:five_prime_UTR | 30.0% | |
| TCTCTCTCTACAAAAACAAA+GGG | + | chr3_1:91768971-91768990 | Msa0387700:five_prime_UTR | 30.0% | |
| !! | ATTGATAATTTGTTCGAACC+AGG | + | chr3_1:91769278-91769297 | Msa0387700:CDS | 30.0% |
| !! | TTGATAATTTGTTCGAACCA+GGG | + | chr3_1:91769279-91769298 | Msa0387700:CDS | 30.0% |
| TAAAAACTGAAAATGGCGTT+TGG | - | chr3_1:91769508-91769527 | None:intergenic | 30.0% | |
| ! | TTTGGACATTGATGTGTTTT+TGG | + | chr3_1:91769648-91769667 | Msa0387700:intron | 30.0% |
| ! | TTGTTTCTTGTAAATAGGAC+CGG | - | chr3_1:91769811-91769830 | None:intergenic | 30.0% |
| ! | CTTTTTCTTGTAATTAGGAC+CGG | + | chr3_1:91769920-91769939 | Msa0387700:intron | 30.0% |
| TGAAGAACTATTATTGTTGC+CGG | - | chr3_1:91770054-91770073 | None:intergenic | 30.0% | |
| GCGATAACTAAGTACTTATA+AGG | + | chr3_1:91770208-91770227 | Msa0387700:intron | 30.0% | |
| ACATTGAAGGACTATTAATG+TGG | + | chr3_1:91770351-91770370 | Msa0387700:intron | 30.0% | |
| TGGCTATTCATTACATATTC+AGG | + | chr3_1:91770371-91770390 | Msa0387700:intron | 30.0% | |
| GGCTATTCATTACATATTCA+GGG | + | chr3_1:91770372-91770391 | Msa0387700:intron | 30.0% | |
| !!! | TTAGTGTGAGGTCTTTTTTT+TGG | + | chr3_1:91770554-91770573 | Msa0387700:intron | 30.0% |
| AAGTTTAAGTAAGCTGAGTT+CGG | - | chr3_1:91770627-91770646 | None:intergenic | 30.0% | |
| GTATAAAATGTGGAGAAAAG+GGG | - | chr3_1:91770884-91770903 | None:intergenic | 30.0% | |
| GGTATAAAATGTGGAGAAAA+GGG | - | chr3_1:91770885-91770904 | None:intergenic | 30.0% | |
| AGGTATAAAATGTGGAGAAA+AGG | - | chr3_1:91770886-91770905 | None:intergenic | 30.0% | |
| ! | TAGATTTTACAAAAGAGGAG+AGG | + | chr3_1:91770945-91770964 | Msa0387700:intron | 30.0% |
| ! | AGATTTTACAAAAGAGGAGA+GGG | + | chr3_1:91770946-91770965 | Msa0387700:intron | 30.0% |
| ATGTAATTCAAACATCTCTC+AGG | + | chr3_1:91770971-91770990 | Msa0387700:intron | 30.0% | |
| TGTAATTCAAACATCTCTCA+GGG | + | chr3_1:91770972-91770991 | Msa0387700:intron | 30.0% | |
| !!! | TTGAAGTTTTAGCTATGAGT+TGG | + | chr3_1:91771208-91771227 | Msa0387700:intron | 30.0% |
| ! | GAAGTCAATTTTCCAACATT+TGG | - | chr3_1:91771372-91771391 | None:intergenic | 30.0% |
| CTTCATTCTTGGATATTACA+AGG | + | chr3_1:91771451-91771470 | Msa0387700:CDS | 30.0% | |
| !! | AAACTAATGGAAAGTACTCA+TGG | - | chr3_1:91771626-91771645 | None:intergenic | 30.0% |
| TTTCTCAGCATACAAACTAA+TGG | - | chr3_1:91771639-91771658 | None:intergenic | 30.0% | |
| !! | GTAGAGGTTGATACTAAAAT+TGG | + | chr3_1:91771870-91771889 | Msa0387700:intron | 30.0% |
| TGTGATACAATTTGAATGGA+TGG | + | chr3_1:91772214-91772233 | Msa0387700:intron | 30.0% | |
| ATACAATTTGAATGGATGGA+TGG | + | chr3_1:91772218-91772237 | Msa0387700:intron | 30.0% | |
| !! | CATTGTTTCTCTTTTTCTTC+GGG | + | chr3_1:91772432-91772451 | Msa0387700:intron | 30.0% |
| GTTATCTCTTCCTACTTAAA+AGG | + | chr3_1:91772490-91772509 | Msa0387700:intron | 30.0% | |
| AAATGTGTGCATGATATTGA+TGG | + | chr3_1:91772916-91772935 | Msa0387700:CDS | 30.0% | |
| AATGTGTGCATGATATTGAT+GGG | + | chr3_1:91772917-91772936 | Msa0387700:CDS | 30.0% | |
| TATATCTCCGATGATAAACT+TGG | - | chr3_1:91773028-91773047 | None:intergenic | 30.0% | |
| ! | GAAGATGTTATGATGTGTTT+TGG | - | chr3_1:91773118-91773137 | None:intergenic | 30.0% |
| !! | ATAACTTAGGTTGATGAATC+AGG | - | chr3_1:91773256-91773275 | None:intergenic | 30.0% |
| AAATTATCACCAAAACAACC+TGG | - | chr3_1:91773295-91773314 | None:intergenic | 30.0% | |
| !! | TGTTTTTCAATTATCACCCA+TGG | - | chr3_1:91773444-91773463 | None:intergenic | 30.0% |
| GGTGATAATTGAAAAACAAG+TGG | + | chr3_1:91773446-91773465 | Msa0387700:CDS | 30.0% | |
| !!! | TAATTCTTTTTTGCCTCAGT+TGG | - | chr3_1:91773601-91773620 | None:intergenic | 30.0% |
| TTAGCTGGAAGGTTATAATA+AGG | - | chr3_1:91773708-91773727 | None:intergenic | 30.0% | |
| ! | CGTTTATGAAATCTGAAACT+AGG | + | chr3_1:91774037-91774056 | Msa0387700:exon | 30.0% |
| ! | AATCTGAAACTAGGTTCTAT+AGG | + | chr3_1:91774046-91774065 | Msa0387700:exon | 30.0% |
| TAAAATTGAAAGTGACTGCA+TGG | - | chr3_1:91774193-91774212 | None:intergenic | 30.0% | |
| TTTCAACGCTTAGTGAAGAA+GGG | - | chr3_1:91769022-91769041 | None:intergenic | 35.0% | |
| ATTTCAACGCTTAGTGAAGA+AGG | - | chr3_1:91769023-91769042 | None:intergenic | 35.0% | |
| !! | TTCTTCACTAAGCGTTGAAA+TGG | + | chr3_1:91769022-91769041 | Msa0387700:exon | 35.0% |
| ATCTTCGTAGTTACGAAACT+CGG | - | chr3_1:91769180-91769199 | None:intergenic | 35.0% | |
| AAACTCTTGAAGATCTTCCA+TGG | - | chr3_1:91769315-91769334 | None:intergenic | 35.0% | |
| ! | ATCTTCAAGAGTTTGAGACA+CGG | + | chr3_1:91769321-91769340 | Msa0387700:CDS | 35.0% |
| CTATGATGCTGTTGTTGATA+CGG | + | chr3_1:91769448-91769467 | Msa0387700:CDS | 35.0% | |
| TTGGTTGTGTGTGGTTTAAA+TGG | + | chr3_1:91769706-91769725 | Msa0387700:intron | 35.0% | |
| !! | AATTGATTTGGGGGATTTGA+AGG | + | chr3_1:91769950-91769969 | Msa0387700:intron | 35.0% |
| !! | ATTGATTTGGGGGATTTGAA+GGG | + | chr3_1:91769951-91769970 | Msa0387700:intron | 35.0% |
| !! | ATCCATGGGTGTTTTTGTAA+GGG | + | chr3_1:91769998-91770017 | Msa0387700:intron | 35.0% |
| ! | AAACGAAGCAGTAGTCATTT+TGG | - | chr3_1:91770399-91770418 | None:intergenic | 35.0% |
| ! | TAGTTTTTGTCTGAACCTTG+AGG | + | chr3_1:91770590-91770609 | Msa0387700:intron | 35.0% |
| ! | CGCTGTGCTATTAGAAATAA+AGG | + | chr3_1:91770917-91770936 | Msa0387700:intron | 35.0% |
| GTAATTCAAACATCTCTCAG+GGG | + | chr3_1:91770973-91770992 | Msa0387700:intron | 35.0% | |
| TTTAAGCATCTCTTATGGGA+AGG | + | chr3_1:91771051-91771070 | Msa0387700:intron | 35.0% | |
| TTAAGCATCTCTTATGGGAA+GGG | + | chr3_1:91771052-91771071 | Msa0387700:intron | 35.0% | |
| TGTGTACCTTTATACTGTCT+TGG | + | chr3_1:91771337-91771356 | Msa0387700:CDS | 35.0% | |
| ATGTGACCAAGACAGTATAA+AGG | - | chr3_1:91771346-91771365 | None:intergenic | 35.0% | |
| TTTATACTGTCTTGGTCACA+TGG | + | chr3_1:91771345-91771364 | Msa0387700:CDS | 35.0% | |
| TTATACTGTCTTGGTCACAT+GGG | + | chr3_1:91771346-91771365 | Msa0387700:CDS | 35.0% | |
| CATTCTTGGATATTACAAGG+AGG | + | chr3_1:91771454-91771473 | Msa0387700:CDS | 35.0% | |
| AGGAGAATAGAATCACAATC+TGG | + | chr3_1:91771474-91771493 | Msa0387700:CDS | 35.0% | |
| AATAGAATCACAATCTGGAC+AGG | + | chr3_1:91771479-91771498 | Msa0387700:CDS | 35.0% | |
| !! | TTGTTTCTGTGCAATAGTAG+AGG | + | chr3_1:91771854-91771873 | Msa0387700:intron | 35.0% |
| !! | TGGTTCAATTTTGACAACCA+TGG | - | chr3_1:91772000-91772019 | None:intergenic | 35.0% |
| TTTCTGGATGTGCTAACAAA+AGG | + | chr3_1:91772274-91772293 | Msa0387700:intron | 35.0% | |
| TTCGGGTAGATCTATTGATA+TGG | + | chr3_1:91772449-91772468 | Msa0387700:intron | 35.0% | |
| ATAGATACAACCCTTCTAGT+AGG | + | chr3_1:91772585-91772604 | Msa0387700:intron | 35.0% | |
| TAGATACAACCCTTCTAGTA+GGG | + | chr3_1:91772586-91772605 | Msa0387700:intron | 35.0% | |
| !! | GGTTAGAGAAAGTATTAAGC+AGG | - | chr3_1:91772678-91772697 | None:intergenic | 35.0% |
| AACAATTGCACACTAAGTGA+AGG | - | chr3_1:91772785-91772804 | None:intergenic | 35.0% | |
| TCAACTCTTTATCTTCCACA+AGG | - | chr3_1:91772886-91772905 | None:intergenic | 35.0% | |
| AAAAACTCAACAGCTGTTGA+TGG | - | chr3_1:91772965-91772984 | None:intergenic | 35.0% | |
| TATCATCGGAGATATATACC+AGG | + | chr3_1:91773032-91773051 | Msa0387700:CDS | 35.0% | |
| ATCATCGGAGATATATACCA+GGG | + | chr3_1:91773033-91773052 | Msa0387700:CDS | 35.0% | |
| CACATCATAACATCTTCAAC+TGG | + | chr3_1:91773121-91773140 | Msa0387700:CDS | 35.0% | |
| AACCCACAATGCTTAGAAAA+AGG | + | chr3_1:91773323-91773342 | Msa0387700:intron | 35.0% | |
| !! | AGCCTTTTTCTAAGCATTGT+GGG | - | chr3_1:91773328-91773347 | None:intergenic | 35.0% |
| !! | AAGCCTTTTTCTAAGCATTG+TGG | - | chr3_1:91773329-91773348 | None:intergenic | 35.0% |
| CAATGCTTAGAAAAAGGCTT+TGG | + | chr3_1:91773329-91773348 | Msa0387700:intron | 35.0% | |
| TATACAGAATTCTCTTGCCT+AGG | - | chr3_1:91773364-91773383 | None:intergenic | 35.0% | |
| TAGAAGCTTACCTCAGATTT+AGG | - | chr3_1:91773510-91773529 | None:intergenic | 35.0% | |
| ATTCTTAGTCAGAAAAGAGG+AGG | - | chr3_1:91773546-91773565 | None:intergenic | 35.0% | |
| ! | ATCAATTTTATGCTAGCTCC+TGG | + | chr3_1:91773646-91773665 | Msa0387700:intron | 35.0% |
| AAACTACAAAGTTAGCTGGA+AGG | - | chr3_1:91773719-91773738 | None:intergenic | 35.0% | |
| ACCACTGAGTTCACTTAATT+GGG | + | chr3_1:91773753-91773772 | Msa0387700:intron | 35.0% | |
| TGCTATGAGGGATTTGTATT+CGG | + | chr3_1:91773959-91773978 | Msa0387700:CDS | 35.0% | |
| AACTGCATGTCTTCGTTCTT+CGG | - | chr3_1:91769125-91769144 | None:intergenic | 40.0% | |
| GTTAATCGTTCACGAACAGA+AGG | + | chr3_1:91769142-91769161 | Msa0387700:CDS | 40.0% | |
| CAACAGCATCATAGAAACGA+AGG | - | chr3_1:91769442-91769461 | None:intergenic | 40.0% | |
| ! | AGACATTGATTGGTTGTGTG+TGG | + | chr3_1:91769697-91769716 | Msa0387700:intron | 40.0% |
| TTCTTGTAAATAGGACCGGA+GGG | - | chr3_1:91769807-91769826 | None:intergenic | 40.0% | |
| TTTCTTGTAAATAGGACCGG+AGG | - | chr3_1:91769808-91769827 | None:intergenic | 40.0% | |
| TTTCTTGTAATTAGGACCGG+AGG | + | chr3_1:91769923-91769942 | Msa0387700:intron | 40.0% | |
| TTCTTGTAATTAGGACCGGA+GGG | + | chr3_1:91769924-91769943 | Msa0387700:intron | 40.0% | |
| TTCCATCGTTATGCATCCAT+GGG | + | chr3_1:91769984-91770003 | Msa0387700:intron | 40.0% | |
| !! | CATCCATGGGTGTTTTTGTA+AGG | + | chr3_1:91769997-91770016 | Msa0387700:intron | 40.0% |
| ATCCCTTACAAAAACACCCA+TGG | - | chr3_1:91770003-91770022 | None:intergenic | 40.0% | |
| TCGGTACTACTTTAACGCAA+TGG | - | chr3_1:91770132-91770151 | None:intergenic | 40.0% | |
| ! | TCGATGAAAATCGACTCACT+TGG | + | chr3_1:91770490-91770509 | Msa0387700:intron | 40.0% |
| ATGTTTGACATTAGAGGGGA+AGG | + | chr3_1:91771019-91771038 | Msa0387700:intron | 40.0% | |
| TGTTTGACATTAGAGGGGAA+GGG | + | chr3_1:91771020-91771039 | Msa0387700:intron | 40.0% | |
| ATCACAATCTGGACAGGAAA+TGG | + | chr3_1:91771485-91771504 | Msa0387700:CDS | 40.0% | |
| ! | AAACAAACCTTCTGGAGAAC+TGG | - | chr3_1:91771840-91771859 | None:intergenic | 40.0% |
| TTGCACAGAAACAAACCTTC+TGG | - | chr3_1:91771848-91771867 | None:intergenic | 40.0% | |
| AGATCCTAACAGAGTCACAA+GGG | - | chr3_1:91771971-91771990 | None:intergenic | 40.0% | |
| AAGATCCTAACAGAGTCACA+AGG | - | chr3_1:91771972-91771991 | None:intergenic | 40.0% | |
| TTGTGACTCTGTTAGGATCT+TGG | + | chr3_1:91771971-91771990 | Msa0387700:intron | 40.0% | |
| ! | TGTTAGGATCTTGGTAACCA+TGG | + | chr3_1:91771980-91771999 | Msa0387700:intron | 40.0% |
| AGAAGCTGACATGATTCTAC+TGG | - | chr3_1:91772062-91772081 | None:intergenic | 40.0% | |
| AGAATCATGTCAGCTTCTAC+TGG | + | chr3_1:91772064-91772083 | Msa0387700:intron | 40.0% | |
| CACTCATCTCAAAAGATGCA+GGG | - | chr3_1:91772191-91772210 | None:intergenic | 40.0% | |
| !!! | CTGCATCTTTTGAGATGAGT+GGG | + | chr3_1:91772190-91772209 | Msa0387700:intron | 40.0% |
| GGGCTGTGATACAATTTGAA+TGG | + | chr3_1:91772210-91772229 | Msa0387700:intron | 40.0% | |
| ACAAAAGGAATTCGACTGCT+TGG | + | chr3_1:91772289-91772308 | Msa0387700:intron | 40.0% | |
| AGATACAACCCTTCTAGTAG+GGG | + | chr3_1:91772587-91772606 | Msa0387700:intron | 40.0% | |
| TCTAGGTAGAACTTGCGAAA+TGG | + | chr3_1:91772647-91772666 | Msa0387700:intron | 40.0% | |
| CTAGGTAGAACTTGCGAAAT+GGG | + | chr3_1:91772648-91772667 | Msa0387700:intron | 40.0% | |
| TAGGTAGAACTTGCGAAATG+GGG | + | chr3_1:91772649-91772668 | Msa0387700:intron | 40.0% | |
| TGATAAATGGGTGTAGAGCA+TGG | - | chr3_1:91772746-91772765 | None:intergenic | 40.0% | |
| TCATCGGAGATATATACCAG+GGG | + | chr3_1:91773034-91773053 | Msa0387700:CDS | 40.0% | |
| CATCATGTTGCAAACTGAGA+GGG | + | chr3_1:91773060-91773079 | Msa0387700:CDS | 40.0% | |
| TCATAACATCTTCAACTGGC+AGG | + | chr3_1:91773125-91773144 | Msa0387700:CDS | 40.0% | |
| ! | ACAAAGCTTCCAGGTTGTTT+TGG | + | chr3_1:91773283-91773302 | Msa0387700:intron | 40.0% |
| AGACAGTGAAGAGGTTTGAA+TGG | - | chr3_1:91773412-91773431 | None:intergenic | 40.0% | |
| ! | AACGCTGTTTCCTAAATCTG+AGG | + | chr3_1:91773497-91773516 | Msa0387700:CDS | 40.0% |
| TTAGTCAGAAAAGAGGAGGA+AGG | - | chr3_1:91773542-91773561 | None:intergenic | 40.0% | |
| AATAGCATGGTAGTAGAGCA+TGG | + | chr3_1:91773571-91773590 | Msa0387700:intron | 40.0% | |
| !!! | TCTTTTTTGCCTCAGTTGGT+CGG | - | chr3_1:91773597-91773616 | None:intergenic | 40.0% |
| CAATTAAGTGAACTCAGTGG+TGG | - | chr3_1:91773754-91773773 | None:intergenic | 40.0% | |
| CACCACTGAGTTCACTTAAT+TGG | + | chr3_1:91773752-91773771 | Msa0387700:intron | 40.0% | |
| AGTTCACTTAATTGGGCATC+AGG | + | chr3_1:91773760-91773779 | Msa0387700:intron | 40.0% | |
| GTTCACTTAATTGGGCATCA+GGG | + | chr3_1:91773761-91773780 | Msa0387700:intron | 40.0% | |
| ACTTTACTCTTTCCATCCTG+TGG | - | chr3_1:91773885-91773904 | None:intergenic | 40.0% | |
| ATACAAATCCCTCATAGCAC+TGG | - | chr3_1:91773958-91773977 | None:intergenic | 40.0% | |
| !! | AATTTGCTGATCACCAAGAG+CGG | + | chr3_1:91773982-91774001 | Msa0387700:CDS | 40.0% |
| ! | AAGAAGCTTGCATTTCTGGA+AGG | + | chr3_1:91774011-91774030 | Msa0387700:CDS | 40.0% |
| ATGGATTCTTATCTCAGGTG+AGG | - | chr3_1:91774174-91774193 | None:intergenic | 40.0% | |
| ACTGCATGGATTCTTATCTC+AGG | - | chr3_1:91774179-91774198 | None:intergenic | 40.0% | |
| !! | GGTTTGTTGAGAAGCTGTGA+GGG | - | chr3_1:91769090-91769109 | None:intergenic | 45.0% |
| !! | GTTCTTCGGTGTCATGGTTT+CGG | - | chr3_1:91769111-91769130 | None:intergenic | 45.0% |
| GTAACTACGAAGATGACGCT+TGG | + | chr3_1:91769186-91769205 | Msa0387700:CDS | 45.0% | |
| TCCTTCCAACGTAACACTGA+CGG | - | chr3_1:91769216-91769235 | None:intergenic | 45.0% | |
| !! | ACCAGGGTTTTTCAACTCCA+TGG | + | chr3_1:91769295-91769314 | Msa0387700:CDS | 45.0% |
| TCCATGGAGTTGAAAAACCC+TGG | - | chr3_1:91769299-91769318 | None:intergenic | 45.0% | |
| GTTCAGACCTCTTTCTGTTC+AGG | + | chr3_1:91769343-91769362 | Msa0387700:CDS | 45.0% | |
| ! | ACCTCTTTCTGTTCAGGTTC+AGG | + | chr3_1:91769349-91769368 | Msa0387700:CDS | 45.0% |
| TCCTGAACCTGAACAGAAAG+AGG | - | chr3_1:91769353-91769372 | None:intergenic | 45.0% | |
| TGCCTGTATATTACTCCCTC+CGG | + | chr3_1:91769789-91769808 | Msa0387700:intron | 45.0% | |
| ACCGGAGGGAGTAATTGATT+TGG | + | chr3_1:91769938-91769957 | Msa0387700:intron | 45.0% | |
| CCCAAATCAATTACTCCCTC+CGG | - | chr3_1:91769942-91769961 | None:intergenic | 45.0% | |
| ! | CCGGAGGGAGTAATTGATTT+GGG | + | chr3_1:91769939-91769958 | Msa0387700:intron | 45.0% |
| !! | CGGAGGGAGTAATTGATTTG+GGG | + | chr3_1:91769940-91769959 | Msa0387700:intron | 45.0% |
| !! | GGAGGGAGTAATTGATTTGG+GGG | + | chr3_1:91769941-91769960 | Msa0387700:intron | 45.0% |
| GTTCCATCGTTATGCATCCA+TGG | + | chr3_1:91769983-91770002 | Msa0387700:intron | 45.0% | |
| TGACTAGCAGTGCACAATCA+AGG | + | chr3_1:91770309-91770328 | Msa0387700:intron | 45.0% | |
| GATTGTGTGTTCAACTCTCG+CGG | + | chr3_1:91770531-91770550 | Msa0387700:intron | 45.0% | |
| AGCACAGCGACCAAAATGTA+AGG | - | chr3_1:91770906-91770925 | None:intergenic | 45.0% | |
| ATTCAAACATCTCTCAGGGG+AGG | + | chr3_1:91770976-91770995 | Msa0387700:intron | 45.0% | |
| GTTTGACATTAGAGGGGAAG+GGG | + | chr3_1:91771021-91771040 | Msa0387700:intron | 45.0% | |
| AGCTTTGCATTGCCATTCTC+TGG | + | chr3_1:91771149-91771168 | Msa0387700:intron | 45.0% | |
| GCTTTGCATTGCCATTCTCT+GGG | + | chr3_1:91771150-91771169 | Msa0387700:intron | 45.0% | |
| ACAGCAGTTATCCCAGAGAA+TGG | - | chr3_1:91771164-91771183 | None:intergenic | 45.0% | |
| GCTGGATCATACTCTAGTAC+AGG | - | chr3_1:91771426-91771445 | None:intergenic | 45.0% | |
| ACTAGAGTATGATCCAGCTG+TGG | + | chr3_1:91771428-91771447 | Msa0387700:CDS | 45.0% | |
| ACAATCTGGACAGGAAATGG+TGG | + | chr3_1:91771488-91771507 | Msa0387700:CDS | 45.0% | |
| ! | AGGTGCCAAGCAAACTGTTT+TGG | + | chr3_1:91771772-91771791 | Msa0387700:CDS | 45.0% |
| ! | GGTGCCAAGCAAACTGTTTT+GGG | + | chr3_1:91771773-91771792 | Msa0387700:CDS | 45.0% |
| ATTGCCCTTGTGACTCTGTT+AGG | + | chr3_1:91771964-91771983 | Msa0387700:intron | 45.0% | |
| CTGACATGATTCTACTGGTC+TGG | - | chr3_1:91772057-91772076 | None:intergenic | 45.0% | |
| CCACTCATCTCAAAAGATGC+AGG | - | chr3_1:91772192-91772211 | None:intergenic | 45.0% | |
| !!! | CCTGCATCTTTTGAGATGAG+TGG | + | chr3_1:91772189-91772208 | Msa0387700:intron | 45.0% |
| GATACAACCCTTCTAGTAGG+GGG | + | chr3_1:91772588-91772607 | Msa0387700:intron | 45.0% | |
| GTTCTACCTAGAACCAAGCA+AGG | - | chr3_1:91772639-91772658 | None:intergenic | 45.0% | |
| TAAATGGGTGTAGAGCATGG+TGG | - | chr3_1:91772743-91772762 | None:intergenic | 45.0% | |
| !! | TTTGGTTCTAGTTGGCCTTG+TGG | + | chr3_1:91772868-91772887 | Msa0387700:intron | 45.0% |
| CCTCTCAGTTTGCAACATGA+TGG | - | chr3_1:91773062-91773081 | None:intergenic | 45.0% | |
| CCATCATGTTGCAAACTGAG+AGG | + | chr3_1:91773059-91773078 | Msa0387700:CDS | 45.0% | |
| CCTGAAAACAGACAGTGAAG+AGG | - | chr3_1:91773421-91773440 | None:intergenic | 45.0% | |
| ! | CCTCTTCACTGTCTGTTTTC+AGG | + | chr3_1:91773418-91773437 | Msa0387700:intron | 45.0% |
| !! | ACTGTCTGTTTTCAGGCCAT+GGG | + | chr3_1:91773425-91773444 | Msa0387700:intron | 45.0% |
| !! | AAAGGCATCCGTTCTCATCA+GGG | - | chr3_1:91773674-91773693 | None:intergenic | 45.0% |
| !! | TAAAGGCATCCGTTCTCATC+AGG | - | chr3_1:91773675-91773694 | None:intergenic | 45.0% |
| GCCCAATTAAGTGAACTCAG+TGG | - | chr3_1:91773757-91773776 | None:intergenic | 45.0% | |
| ! | GTTTTTGCAGAATGCACCAC+AGG | + | chr3_1:91773866-91773885 | Msa0387700:intron | 45.0% |
| GCACAAGAAGCTTGCATTTC+TGG | + | chr3_1:91774007-91774026 | Msa0387700:CDS | 45.0% | |
| !! | CCTCTGAAGCTATACCAGAA+AGG | - | chr3_1:91774112-91774131 | None:intergenic | 45.0% |
| ! | CCTTTCTGGTATAGCTTCAG+AGG | + | chr3_1:91774109-91774128 | Msa0387700:three_prime_UTR | 45.0% |
| GACGTCGCGTTTACTAGGTT+GGG | - | chr3_1:91769060-91769079 | None:intergenic | 50.0% | |
| AACACGACGTCGCGTTTACT+AGG | - | chr3_1:91769065-91769084 | None:intergenic | 50.0% | |
| !! | CGGTTTGTTGAGAAGCTGTG+AGG | - | chr3_1:91769091-91769110 | None:intergenic | 50.0% |
| !! | GTCTTCGTTCTTCGGTGTCA+TGG | - | chr3_1:91769117-91769136 | None:intergenic | 50.0% |
| GTACACCGTCAGTGTTACGT+TGG | + | chr3_1:91769208-91769227 | Msa0387700:CDS | 50.0% | |
| ACCGTCAGTGTTACGTTGGA+AGG | + | chr3_1:91769212-91769231 | Msa0387700:CDS | 50.0% | |
| AGGTTCAGGATCACGAGTGT+CGG | + | chr3_1:91769363-91769382 | Msa0387700:CDS | 50.0% | |
| GAAGCACAAACCCTAACACC+TGG | - | chr3_1:91769398-91769417 | None:intergenic | 50.0% | |
| TGTTAGGGTTTGTGCTTCGC+AGG | + | chr3_1:91769400-91769419 | Msa0387700:CDS | 50.0% | |
| GACCGGAGGGAGTAATATAC+AGG | - | chr3_1:91769794-91769813 | None:intergenic | 50.0% | |
| CACCCATGGATGCATAACGA+TGG | - | chr3_1:91769989-91770008 | None:intergenic | 50.0% | |
| TCGGATCAAGAGAGACCTCA+AGG | - | chr3_1:91770608-91770627 | None:intergenic | 50.0% | |
| !! | GTGGAGAAAAGGGGTATTGC+TGG | - | chr3_1:91770875-91770894 | None:intergenic | 50.0% |
| ! | TAGCAGCAGCATCTAGGATC+AGG | + | chr3_1:91771183-91771202 | Msa0387700:intron | 50.0% |
| TGGTCACATGGGCCAAATGT+TGG | + | chr3_1:91771357-91771376 | Msa0387700:CDS | 50.0% | |
| ACTCTAGTACAGGCTGCACA+AGG | - | chr3_1:91771416-91771435 | None:intergenic | 50.0% | |
| TCCAGCTGTGGCTTCATTCT+TGG | + | chr3_1:91771440-91771459 | Msa0387700:CDS | 50.0% | |
| TCCAAGAATGAAGCCACAGC+TGG | - | chr3_1:91771444-91771463 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGTACTGCAACAC+AGG | + | chr3_1:91771504-91771523 | Msa0387700:CDS | 50.0% |
| ! | GTTTTCGCTGGAACTGGAGA+GGG | - | chr3_1:91771712-91771731 | None:intergenic | 50.0% |
| ! | AAGCGATCTGCTTTGGGTAC+CGG | + | chr3_1:91771740-91771759 | Msa0387700:CDS | 50.0% |
| !! | TTGGGTACCGGTTCTTCTGA+AGG | + | chr3_1:91771752-91771771 | Msa0387700:CDS | 50.0% |
| CTTGGCACCTTCAGAAGAAC+CGG | - | chr3_1:91771762-91771781 | None:intergenic | 50.0% | |
| ! | GGCACCCAAAACAGTTTGCT+TGG | - | chr3_1:91771780-91771799 | None:intergenic | 50.0% |
| CTCAAAAGATGCAGGGCAAG+AGG | - | chr3_1:91772184-91772203 | None:intergenic | 50.0% | |
| AAGACCACCCCCTACTAGAA+GGG | - | chr3_1:91772598-91772617 | None:intergenic | 50.0% | |
| TAAGACCACCCCCTACTAGA+AGG | - | chr3_1:91772599-91772618 | None:intergenic | 50.0% | |
| ! | AGCATGGTGGAGAGCAAAGA+AGG | - | chr3_1:91772730-91772749 | None:intergenic | 50.0% |
| !! | CACTGTCTGTTTTCAGGCCA+TGG | + | chr3_1:91773424-91773443 | Msa0387700:intron | 50.0% |
| ! | AAGGCATCCGTTCTCATCAG+GGG | - | chr3_1:91773673-91773692 | None:intergenic | 50.0% |
| AGGGCCTGCAGAGTTTGATT+AGG | + | chr3_1:91773780-91773799 | Msa0387700:intron | 50.0% | |
| TGCGCCTAATCAAACTCTGC+AGG | - | chr3_1:91773787-91773806 | None:intergenic | 50.0% | |
| TTGCAGAATGCACCACAGGA+TGG | + | chr3_1:91773870-91773889 | Msa0387700:intron | 50.0% | |
| TCAAGACAGCCAGTGCTATG+AGG | + | chr3_1:91773946-91773965 | Msa0387700:CDS | 50.0% | |
| CAAGACAGCCAGTGCTATGA+GGG | + | chr3_1:91773947-91773966 | Msa0387700:CDS | 50.0% | |
| CGACGTCGCGTTTACTAGGT+TGG | - | chr3_1:91769061-91769080 | None:intergenic | 55.0% | |
| GGTTCAGGATCACGAGTGTC+GGG | + | chr3_1:91769364-91769383 | Msa0387700:CDS | 55.0% | |
| ! | GGAGCTGGTTCCAGGTGTTA+GGG | + | chr3_1:91769385-91769404 | Msa0387700:CDS | 55.0% |
| CAACTCTCGCGGTTAGTGTG+AGG | + | chr3_1:91770542-91770561 | Msa0387700:intron | 55.0% | |
| CTGCTGTAGCAGCAGCATCT+AGG | + | chr3_1:91771177-91771196 | Msa0387700:intron | 55.0% | |
| ! | CGTTTTCGCTGGAACTGGAG+AGG | - | chr3_1:91771713-91771732 | None:intergenic | 55.0% |
| TCCAGTTCCAGCGAAAACGC+CGG | + | chr3_1:91771714-91771733 | Msa0387700:intron | 55.0% | |
| GGTACCCAAAGCAGATCGCT+TGG | - | chr3_1:91771741-91771760 | None:intergenic | 55.0% | |
| TTGGGTGCCAGTTCTCCTGA+AGG | + | chr3_1:91771791-91771810 | Msa0387700:CDS | 55.0% | |
| TGGGTGCCAGTTCTCCTGAA+GGG | + | chr3_1:91771792-91771811 | Msa0387700:CDS | 55.0% | |
| ! | AGGGGCCAAGCGATCTGTTT+TGG | + | chr3_1:91771811-91771830 | Msa0387700:CDS | 55.0% |
| ! | GGGGCCAAGCGATCTGTTTT+GGG | + | chr3_1:91771812-91771831 | Msa0387700:CDS | 55.0% |
| GGCACCCAAAACAGATCGCT+TGG | - | chr3_1:91771819-91771838 | None:intergenic | 55.0% | |
| TTGGGTGCCAGTTCTCCAGA+AGG | + | chr3_1:91771830-91771849 | Msa0387700:CDS | 55.0% | |
| ACAACCCTTCTAGTAGGGGG+TGG | + | chr3_1:91772591-91772610 | Msa0387700:intron | 55.0% | |
| ! | GTGGTCTTACCCTGGGACTT+GGG | + | chr3_1:91772610-91772629 | Msa0387700:intron | 55.0% |
| ! | GGGAGACCTTGCTTGGTTCT+AGG | + | chr3_1:91772630-91772649 | Msa0387700:intron | 55.0% |
| TTGCAACATGATGGCACCCC+TGG | - | chr3_1:91773053-91773072 | None:intergenic | 55.0% | |
| !! | GGCTTTGGATCTGCAAGCCT+AGG | + | chr3_1:91773344-91773363 | Msa0387700:intron | 55.0% |
| TCCTGGTCCCCTGATGAGAA+CGG | + | chr3_1:91773663-91773682 | Msa0387700:intron | 55.0% | |
| ! | GGGAGCTGGTTCCAGGTGTT+AGG | + | chr3_1:91769384-91769403 | Msa0387700:CDS | 60.0% |
| CCAGTTCCAGCGAAAACGCC+GGG | + | chr3_1:91771715-91771734 | Msa0387700:intron | 60.0% | |
| CCAAAGCAGATCGCTTGGCC+CGG | - | chr3_1:91771736-91771755 | None:intergenic | 60.0% | |
| CGGGCCAAGCGATCTGCTTT+GGG | + | chr3_1:91771734-91771753 | Msa0387700:CDS | 60.0% | |
| GGGTGCCAGTTCTCCTGAAG+GGG | + | chr3_1:91771793-91771812 | Msa0387700:CDS | 60.0% | |
| CTTGGCCCCTTCAGGAGAAC+TGG | - | chr3_1:91771801-91771820 | None:intergenic | 60.0% | |
| ACAGATCGCTTGGCCCCTTC+AGG | - | chr3_1:91771809-91771828 | None:intergenic | 60.0% | |
| ! | AGTAGGGGGTGGTCTTACCC+TGG | + | chr3_1:91772602-91772621 | Msa0387700:intron | 60.0% |
| ! | GTAGGGGGTGGTCTTACCCT+GGG | + | chr3_1:91772603-91772622 | Msa0387700:intron | 60.0% |
| ! | GGTGGTCTTACCCTGGGACT+TGG | + | chr3_1:91772609-91772628 | Msa0387700:intron | 60.0% |
| GCAAGGTCTCCCAAGTCCCA+GGG | - | chr3_1:91772622-91772641 | None:intergenic | 60.0% | |
| AGCAAGGTCTCCCAAGTCCC+AGG | - | chr3_1:91772623-91772642 | None:intergenic | 60.0% | |
| GGGACTTGGGAGACCTTGCT+TGG | + | chr3_1:91772623-91772642 | Msa0387700:intron | 60.0% | |
| AGAGCATGGCCGACCAACTG+AGG | + | chr3_1:91773585-91773604 | Msa0387700:intron | 60.0% | |
| TCCGTTCTCATCAGGGGACC+AGG | - | chr3_1:91773667-91773686 | None:intergenic | 60.0% | |
| GCTTCTTGTGCAGCCGCTCT+TGG | - | chr3_1:91773998-91774017 | None:intergenic | 60.0% | |
| !! | GGATCACGAGTGTCGGGAGC+TGG | + | chr3_1:91769370-91769389 | Msa0387700:CDS | 65.0% |
| !! | GAGTGTCGGGAGCTGGTTCC+AGG | + | chr3_1:91769377-91769396 | Msa0387700:CDS | 65.0% |
| ! | CCCGGCGTTTTCGCTGGAAC+TGG | - | chr3_1:91771718-91771737 | None:intergenic | 65.0% |
| CCGGGCCAAGCGATCTGCTT+TGG | + | chr3_1:91771733-91771752 | Msa0387700:CDS | 65.0% | |
| ! | GCTTGGCCCGGCGTTTTCGC+TGG | - | chr3_1:91771724-91771743 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91768960 | 91774302 | 91768960 | ID=Msa0387700;Name=Msa0387700 |
| chr3_1 | mRNA | 91768960 | 91774302 | 91768960 | ID=Msa0387700-mRNA-1;Parent=Msa0387700;Name=Msa0387700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=81|1|1|1|1|1|6|250|462 |
| chr3_1 | exon | 91768960 | 91769469 | 91768960 | ID=Msa0387700-mRNA-1:exon:25625;Parent=Msa0387700-mRNA-1 |
| chr3_1 | exon | 91771294 | 91771596 | 91771294 | ID=Msa0387700-mRNA-1:exon:25626;Parent=Msa0387700-mRNA-1 |
| chr3_1 | exon | 91771719 | 91771851 | 91771719 | ID=Msa0387700-mRNA-1:exon:25627;Parent=Msa0387700-mRNA-1 |
| chr3_1 | exon | 91772879 | 91773146 | 91772879 | ID=Msa0387700-mRNA-1:exon:25628;Parent=Msa0387700-mRNA-1 |
| chr3_1 | exon | 91773440 | 91773518 | 91773440 | ID=Msa0387700-mRNA-1:exon:25629;Parent=Msa0387700-mRNA-1 |
| chr3_1 | exon | 91773876 | 91774302 | 91773876 | ID=Msa0387700-mRNA-1:exon:25630;Parent=Msa0387700-mRNA-1 |
| chr3_1 | five_prime_UTR | 91768960 | 91769040 | 91768960 | ID=Msa0387700-mRNA-1:five_prime_utr;Parent=Msa0387700-mRNA-1 |
| chr3_1 | CDS | 91769041 | 91769469 | 91769041 | ID=Msa0387700-mRNA-1:cds;Parent=Msa0387700-mRNA-1 |
| chr3_1 | CDS | 91771294 | 91771596 | 91771294 | ID=Msa0387700-mRNA-1:cds;Parent=Msa0387700-mRNA-1 |
| chr3_1 | CDS | 91771719 | 91771851 | 91771719 | ID=Msa0387700-mRNA-1:cds;Parent=Msa0387700-mRNA-1 |
| chr3_1 | CDS | 91772879 | 91773146 | 91772879 | ID=Msa0387700-mRNA-1:cds;Parent=Msa0387700-mRNA-1 |
| chr3_1 | CDS | 91773440 | 91773518 | 91773440 | ID=Msa0387700-mRNA-1:cds;Parent=Msa0387700-mRNA-1 |
| chr3_1 | CDS | 91773876 | 91774052 | 91773876 | ID=Msa0387700-mRNA-1:cds;Parent=Msa0387700-mRNA-1 |
| chr3_1 | three_prime_UTR | 91774053 | 91774302 | 91774053 | ID=Msa0387700-mRNA-1:three_prime_utr;Parent=Msa0387700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
