Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387760 | XP_003601531.2 | 92.600 | 473 | 35 | 0 | 3 | 475 | 10 | 482 | 0.0 | 912 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387760 | G7J8V1 | 92.600 | 473 | 35 | 0 | 3 | 475 | 10 | 482 | 0.0 | 912 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229720 | Msa0387760 | 0.864210 | 1.432683e-64 | -8.615850e-47 |
| Msa0387670 | Msa0387760 | 0.810127 | 1.345350e-50 | -8.615850e-47 |
| Msa0387700 | Msa0387760 | 0.878707 | 2.258200e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387760 | MtrunA17_Chr3g0120771 | 92.600 | 473 | 35 | 0 | 3 | 475 | 10 | 482 | 0.0 | 912 |
| Msa0387760 | MtrunA17_Chr3g0120781 | 67.647 | 476 | 102 | 7 | 1 | 475 | 1 | 425 | 0.0 | 629 |
| Msa0387760 | MtrunA17_Chr6g0466721 | 65.525 | 438 | 101 | 4 | 38 | 475 | 5 | 392 | 0.0 | 565 |
| Msa0387760 | MtrunA17_Chr6g0466711 | 82.022 | 89 | 16 | 0 | 305 | 393 | 1 | 89 | 1.23e-46 | 156 |
| Msa0387760 | MtrunA17_Chr6g0466701 | 61.538 | 117 | 45 | 0 | 28 | 144 | 4 | 120 | 6.97e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387760 | AT4G25330.1 | 35.196 | 179 | 106 | 3 | 47 | 223 | 37 | 207 | 3.03e-28 | 112 |
Find 111 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGAAGCTTGCATTTC+TGG | 0.094771 | 3_1:-91833532 | Msa0387760:CDS |
| ATTTGTTAATATAACCTTTC+TGG | 0.146623 | 3_1:-91833444 | Msa0387760:three_prime_UTR |
| ACCTCTTTCTGTTCAGGTTC+AGG | 0.218482 | 3_1:-91838299 | Msa0387760:CDS |
| AGGGGCCAAGCGATCTGTTT+TGG | 0.228672 | 3_1:-91835723 | Msa0387760:CDS |
| AGGGGCCAAGCGATCTGTTT+TGG | 0.228672 | 3_1:-91835762 | Msa0387760:CDS |
| TAGAAGCTTACCTCAGATTT+AGG | 0.228922 | 3_1:+91834032 | None:intergenic |
| CCGGGCCAAGCGATCAGTTT+TGG | 0.244511 | 3_1:-91835840 | Msa0387760:CDS |
| GAGTGTCGGGAGCTGGTTCC+AGG | 0.263329 | 3_1:-91838271 | Msa0387760:CDS |
| TCCAGCTGTGGCTTCATTCT+TGG | 0.270435 | 3_1:-91836145 | Msa0387760:CDS |
| GGGAGCTGGTTCCAGGTGTT+AGG | 0.277062 | 3_1:-91838264 | Msa0387760:CDS |
| GTTCAGACCTCTTTCTGTTC+AGG | 0.329497 | 3_1:-91838305 | Msa0387760:CDS |
| ACAGATCGCTTGGCCCCTTC+AGG | 0.329863 | 3_1:+91835767 | None:intergenic |
| AACTGCATGTCTTCGTTCTT+CGG | 0.352064 | 3_1:+91838526 | None:intergenic |
| GCTTCTTGTGCAGCCGCTCT+TGG | 0.359019 | 3_1:+91833544 | None:intergenic |
| TGCTATGAGGGATTTGTATT+CGG | 0.359680 | 3_1:-91833580 | Msa0387760:CDS |
| GAAGATGTTATGATGTGTTT+TGG | 0.362413 | 3_1:+91834424 | None:intergenic |
| AGGTGCCAAGCAAACTGTTT+TGG | 0.365249 | 3_1:-91835801 | Msa0387760:CDS |
| GTTCTTCGGTGTCATGGTTT+CGG | 0.382444 | 3_1:+91838540 | None:intergenic |
| AACACGACGTCGCGTTTACT+AGG | 0.389994 | 3_1:+91838586 | None:intergenic |
| AAACAAACCTTCTGGAGAAC+TGG | 0.407449 | 3_1:+91835697 | None:intergenic |
| AATCTGAAACTAGGTTCTAT+AGG | 0.409162 | 3_1:-91833493 | Msa0387760:exon |
| ATCACAATCTGGACAGGAAA+TGG | 0.411738 | 3_1:-91836100 | Msa0387760:CDS |
| TTCTTCACTAAGCGTTGAAA+TGG | 0.422515 | 3_1:-91838626 | Msa0387760:exon |
| TGTGTACCTTTATACTGTCT+TGG | 0.424257 | 3_1:-91836248 | Msa0387760:CDS |
| CTTGGCCCCTTCAGGAGAAC+TGG | 0.425769 | 3_1:+91835775 | None:intergenic |
| GTCTTCGTTCTTCGGTGTCA+TGG | 0.427189 | 3_1:+91838534 | None:intergenic |
| CTATGATGCTGTTGTCGATA+CGG | 0.432250 | 3_1:-91838200 | Msa0387760:intron |
| CTTGGCACCTTCAGAAGAAC+CGG | 0.448227 | 3_1:+91835814 | None:intergenic |
| CGTTTATGAAATCTGAAACT+AGG | 0.452229 | 3_1:-91833502 | Msa0387760:exon |
| GGAGCTGGTTCCAGGTGTTA+GGG | 0.455064 | 3_1:-91838263 | Msa0387760:CDS |
| CGACGTCGCGTTTACTAGGT+TGG | 0.457333 | 3_1:+91838590 | None:intergenic |
| CTTCATTCTTGGATATTACA+AGG | 0.457723 | 3_1:-91836134 | Msa0387760:CDS |
| CACATCATAACATCTTCAAC+TGG | 0.458653 | 3_1:-91834418 | Msa0387760:CDS |
| TTTATACTGTCTTGGTCACA+TGG | 0.463500 | 3_1:-91836240 | Msa0387760:CDS |
| CTTGGCCCCTTCAGTAGAAC+TGG | 0.468765 | 3_1:+91835736 | None:intergenic |
| TGTTAGGGTTTGTGCTTCGC+AGG | 0.469050 | 3_1:-91838248 | Msa0387760:CDS |
| ATTTCAACGCTTAGTGAAGA+AGG | 0.472561 | 3_1:+91838628 | None:intergenic |
| GGTTCAGGATCACGAGTGTC+GGG | 0.473562 | 3_1:-91838284 | Msa0387760:CDS |
| TGGGTGCCAGTTCTCCTGAA+GGG | 0.474895 | 3_1:-91835781 | Msa0387760:CDS |
| GGCACCCAAAACAGTTTGCT+TGG | 0.478020 | 3_1:+91835796 | None:intergenic |
| TTGGGTGCCAGTTCTCCTGA+AGG | 0.480310 | 3_1:-91835782 | Msa0387760:CDS |
| TTGGGTGCCAGTTCTACTGA+AGG | 0.481190 | 3_1:-91835743 | Msa0387760:CDS |
| TTGGGTACCGGTTCTTCTGA+AGG | 0.485975 | 3_1:-91835821 | Msa0387760:CDS |
| AAATGTGTGCATGATATTGA+TGG | 0.487824 | 3_1:-91834623 | Msa0387760:CDS |
| ATGGTGGTGTACTGCAACAC+AGG | 0.488051 | 3_1:-91836081 | Msa0387760:CDS |
| GACGTCGCGTTTACTAGGTT+GGG | 0.496512 | 3_1:+91838591 | None:intergenic |
| ATGTGACCAAGACAGTATAA+AGG | 0.500143 | 3_1:+91836242 | None:intergenic |
| GGGTGCCAGTTCTCCTGAAG+GGG | 0.503685 | 3_1:-91835780 | Msa0387760:CDS |
| TCCAAGAATGAAGCCACAGC+TGG | 0.503907 | 3_1:+91836144 | None:intergenic |
| ATTGATAATTTGTTCGAACC+AGG | 0.505158 | 3_1:-91838370 | Msa0387760:CDS |
| TATATCTCCGATGATAAACT+TGG | 0.509755 | 3_1:+91834514 | None:intergenic |
| TTGCAACATGATGGCACCCC+TGG | 0.509975 | 3_1:+91834489 | None:intergenic |
| TGGGTGCCAGTTCTACTGAA+GGG | 0.510576 | 3_1:-91835742 | Msa0387760:CDS |
| TCCTGAACCTGAACAGAAAG+AGG | 0.511183 | 3_1:+91838298 | None:intergenic |
| TCAAGACAGCCAGTGCTATG+AGG | 0.513042 | 3_1:-91833593 | Msa0387760:CDS |
| CCAGTTCCAGCGAAAACGCC+GGG | 0.514093 | 3_1:-91835858 | Msa0387760:intron |
| GGATCACGAGTGTCGGGAGC+TGG | 0.515386 | 3_1:-91838278 | Msa0387760:CDS |
| TTGGGTGCCAGTTCTCCAGA+AGG | 0.516886 | 3_1:-91835704 | Msa0387760:intron |
| AGGAGAATAGAATCACAATC+TGG | 0.519936 | 3_1:-91836111 | Msa0387760:CDS |
| GGCACCCAAAACAGATCGCT+TGG | 0.520400 | 3_1:+91835718 | None:intergenic |
| GGCACCCAAAACAGATCGCT+TGG | 0.520400 | 3_1:+91835757 | None:intergenic |
| TGGTCACATGGGCCAAATGT+TGG | 0.523682 | 3_1:-91836228 | Msa0387760:CDS |
| CAAGACAGCCAGTGCTATGA+GGG | 0.525996 | 3_1:-91833592 | Msa0387760:CDS |
| GGGTGCCAGTTCTACTGAAG+GGG | 0.526110 | 3_1:-91835741 | Msa0387760:CDS |
| CCAAAACTGATCGCTTGGCC+CGG | 0.528989 | 3_1:+91835840 | None:intergenic |
| CCTTTCTGGTATAGCTTCAG+AGG | 0.531149 | 3_1:-91833430 | Msa0387760:three_prime_UTR |
| AATAGAATCACAATCTGGAC+AGG | 0.535018 | 3_1:-91836106 | Msa0387760:CDS |
| GGTACCCAAAACTGATCGCT+TGG | 0.536010 | 3_1:+91835835 | None:intergenic |
| ACCGTCAGTGTTACGTTGGA+AGG | 0.536971 | 3_1:-91838436 | Msa0387760:CDS |
| AAACTCTTGAAGATCTTCCA+TGG | 0.540550 | 3_1:+91838336 | None:intergenic |
| CCTCTCAGTTTGCAACATGA+TGG | 0.545960 | 3_1:+91834480 | None:intergenic |
| AGGTTCAGGATCACGAGTGT+CGG | 0.549905 | 3_1:-91838285 | Msa0387760:CDS |
| ACTGCATGGATTCTTATCTC+AGG | 0.550248 | 3_1:+91833363 | None:intergenic |
| ACTTTACTCTTTCCATCCTG+TGG | 0.553303 | 3_1:+91833657 | None:intergenic |
| TCCAGTTCCAGCGAAAACGC+CGG | 0.556318 | 3_1:-91835859 | Msa0387760:intron |
| GCTGGATCATACTCTAGTAC+AGG | 0.562859 | 3_1:+91836162 | None:intergenic |
| TTTGGTTCTAGTTGGCCTTG+TGG | 0.567369 | 3_1:-91834671 | Msa0387760:intron |
| TCATAACATCTTCAACTGGC+AGG | 0.567554 | 3_1:-91834414 | Msa0387760:intron |
| ATACAAATCCCTCATAGCAC+TGG | 0.572442 | 3_1:+91833584 | None:intergenic |
| CGGTTTGTTGAGAAGCTGTG+AGG | 0.573005 | 3_1:+91838560 | None:intergenic |
| TAAAATTGAAAGTGACTGCA+TGG | 0.579793 | 3_1:+91833349 | None:intergenic |
| CCTCTGAAGCTATACCAGAA+AGG | 0.582930 | 3_1:+91833430 | None:intergenic |
| GTAACTACGAAGATGACGCT+TGG | 0.588473 | 3_1:-91838462 | Msa0387760:CDS |
| TTGATAATTTGTTCGAACCA+GGG | 0.593655 | 3_1:-91838369 | Msa0387760:CDS |
| AATTTGAAGATTGTTTACTC+AGG | 0.596581 | 3_1:-91833627 | Msa0387760:CDS |
| TCCTTCCAACGTAACACTGA+CGG | 0.597934 | 3_1:+91838435 | None:intergenic |
| AAGAAGCTTGCATTTCTGGA+AGG | 0.597936 | 3_1:-91833528 | Msa0387760:CDS |
| CATCATGTTGCAAACTGAGA+GGG | 0.605805 | 3_1:-91834479 | Msa0387760:CDS |
| ATCTTCGTAGTTACGAAACT+CGG | 0.607772 | 3_1:+91838471 | None:intergenic |
| GGTTTGTTGAGAAGCTGTGA+GGG | 0.608654 | 3_1:+91838561 | None:intergenic |
| GTTAATCGTTCACGAACAGA+AGG | 0.610755 | 3_1:-91838506 | Msa0387760:CDS |
| TTTCAACGCTTAGTGAAGAA+GGG | 0.612132 | 3_1:+91838629 | None:intergenic |
| TTGCAGAATGCACCACAGGA+TGG | 0.615727 | 3_1:-91833669 | Msa0387760:intron |
| AACGCTGTTTCCTAAATCTG+AGG | 0.616710 | 3_1:-91834042 | Msa0387760:intron |
| ATGGATTCTTATCTCAGGTG+AGG | 0.617937 | 3_1:+91833368 | None:intergenic |
| TATCATCGGAGATATATACC+AGG | 0.620834 | 3_1:-91834507 | Msa0387760:CDS |
| AATGTGTGCATGATATTGAT+GGG | 0.634957 | 3_1:-91834622 | Msa0387760:CDS |
| CCATCATGTTGCAAACTGAG+AGG | 0.636376 | 3_1:-91834480 | Msa0387760:CDS |
| TCAACTCTTTATCTTCCACA+AGG | 0.640133 | 3_1:+91834656 | None:intergenic |
| GAAGCACAAACCCTAACACC+TGG | 0.649009 | 3_1:+91838253 | None:intergenic |
| GTACACCGTCAGTGTTACGT+TGG | 0.658687 | 3_1:-91838440 | Msa0387760:CDS |
| ACTCTAGTACAGGCTGCACA+AGG | 0.661177 | 3_1:+91836172 | None:intergenic |
| ATCTTCAAGAGTTTGAGACA+CGG | 0.662272 | 3_1:-91838327 | Msa0387760:CDS |
| ATCATCGGAGATATATACCA+GGG | 0.663531 | 3_1:-91834506 | Msa0387760:CDS |
| ACAATCTGGACAGGAAATGG+TGG | 0.671026 | 3_1:-91836097 | Msa0387760:CDS |
| TTATACTGTCTTGGTCACAT+GGG | 0.673466 | 3_1:-91836239 | Msa0387760:CDS |
| CAACAGCATCATAGAAACGA+AGG | 0.677214 | 3_1:+91838209 | None:intergenic |
| AATTTGCTGATCACCAAGAG+CGG | 0.685810 | 3_1:-91833557 | Msa0387760:CDS |
| CATTCTTGGATATTACAAGG+AGG | 0.704872 | 3_1:-91836131 | Msa0387760:CDS |
| ACTAGAGTATGATCCAGCTG+TGG | 0.711810 | 3_1:-91836157 | Msa0387760:CDS |
| TCATCGGAGATATATACCAG+GGG | 0.730219 | 3_1:-91834505 | Msa0387760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTTTTATTT+TGG | - | chr3_1:91833893-91833912 | Msa0387760:intron | 0.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3_1:91834360-91834379 | Msa0387760:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3_1:91834361-91834380 | Msa0387760:intron | 10.0% |
| !! | TAATTAAATGCATATATTAA+TGG | - | chr3_1:91834742-91834761 | Msa0387760:intron | 10.0% |
| !! | AATTAAATGCATATATTAAT+GGG | - | chr3_1:91834743-91834762 | Msa0387760:intron | 10.0% |
| !! | TGTAATTAAATAATCTATTA+GGG | + | chr3_1:91835005-91835024 | None:intergenic | 10.0% |
| !!! | TTATTTTTGTTATTTACTAT+CGG | - | chr3_1:91837574-91837593 | Msa0387760:intron | 10.0% |
| !! | AATAAAAAACAAAAAAGATT+GGG | + | chr3_1:91838581-91838600 | None:intergenic | 10.0% |
| !! | AAATAAAAAACAAAAAAGAT+TGG | + | chr3_1:91838582-91838601 | None:intergenic | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr3_1:91834325-91834344 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3_1:91834362-91834381 | Msa0387760:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr3_1:91834425-91834444 | Msa0387760:CDS | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr3_1:91834426-91834445 | Msa0387760:CDS | 15.0% |
| !!! | TTAAAATTTTGATACATTGA+AGG | - | chr3_1:91834658-91834677 | Msa0387760:CDS | 15.0% |
| !! | GTAATTAAATAATCTATTAG+GGG | + | chr3_1:91835004-91835023 | None:intergenic | 15.0% |
| !! | GTGTAATTAAATAATCTATT+AGG | + | chr3_1:91835006-91835025 | None:intergenic | 15.0% |
| !!! | ATATTTTATTATGCAAAAAG+TGG | - | chr3_1:91835167-91835186 | Msa0387760:intron | 15.0% |
| !! | AATAATAAAATTCTAAGTGT+TGG | + | chr3_1:91836390-91836409 | None:intergenic | 15.0% |
| !! | ATAACAATTATGATAAGTAA+CGG | + | chr3_1:91836840-91836859 | None:intergenic | 15.0% |
| !! | AGTAGATAAAAATGATAAAT+GGG | + | chr3_1:91837123-91837142 | None:intergenic | 15.0% |
| !! | AAGTAGATAAAAATGATAAA+TGG | + | chr3_1:91837124-91837143 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTATCTACTT+TGG | - | chr3_1:91837124-91837143 | Msa0387760:intron | 15.0% |
| !! | CTTTGTTAAAATTATAACTT+AGG | + | chr3_1:91837634-91837653 | None:intergenic | 15.0% |
| !! | AATAAGGATTACATATTTAA+AGG | + | chr3_1:91838057-91838076 | None:intergenic | 15.0% |
| !! | CAGTAATGAAGTTAAATATT+GGG | - | chr3_1:91833848-91833867 | Msa0387760:intron | 20.0% |
| !! | AGTAATGAAGTTAAATATTG+GGG | - | chr3_1:91833849-91833868 | Msa0387760:intron | 20.0% |
| !! | AATGCTTGTATTAATTGATT+TGG | - | chr3_1:91834052-91834071 | Msa0387760:CDS | 20.0% |
| !!! | ATGCTTGTATTAATTGATTT+GGG | - | chr3_1:91834053-91834072 | Msa0387760:CDS | 20.0% |
| !! | TATATGAAAAGAGTTAATGT+CGG | + | chr3_1:91834266-91834285 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr3_1:91834326-91834345 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr3_1:91834385-91834404 | Msa0387760:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3_1:91834458-91834477 | Msa0387760:CDS | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3_1:91834459-91834478 | Msa0387760:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3_1:91834495-91834514 | Msa0387760:CDS | 20.0% |
| !! | AAAATGTAAGGTATAAAATG+TGG | + | chr3_1:91835213-91835232 | None:intergenic | 20.0% |
| !!! | ACATTTTATACCTTACATTT+TGG | - | chr3_1:91835212-91835231 | Msa0387760:intron | 20.0% |
| !! | AATATAATTCAAACATCTCT+CGG | - | chr3_1:91835289-91835308 | Msa0387760:intron | 20.0% |
| !! | TTTAATATGTTTGACATTAG+AGG | - | chr3_1:91835332-91835351 | Msa0387760:intron | 20.0% |
| !! | TTAATATGTTTGACATTAGA+GGG | - | chr3_1:91835333-91835352 | Msa0387760:intron | 20.0% |
| !!! | TGTGAAATTGATGTTTTTAT+AGG | - | chr3_1:91835591-91835610 | Msa0387760:intron | 20.0% |
| !!! | AAAAAATGTAGTAGTTTTTC+TGG | - | chr3_1:91836623-91836642 | Msa0387760:intron | 20.0% |
| !! | ACAACATAAATAAATGGTAA+TGG | + | chr3_1:91836771-91836790 | None:intergenic | 20.0% |
| !! | TACCATTTATTTATGTTGTT+TGG | - | chr3_1:91836772-91836791 | Msa0387760:intron | 20.0% |
| !! | ATCCAAACAACATAAATAAA+TGG | + | chr3_1:91836777-91836796 | None:intergenic | 20.0% |
| !!! | AAAGTTATTACCTTTTAAGT+AGG | + | chr3_1:91836868-91836887 | None:intergenic | 20.0% |
| !!! | AAAAATATCAAAGCATCAAT+AGG | - | chr3_1:91837839-91837858 | Msa0387760:intron | 20.0% |
| !! | CTAAGAATAATTTAATAGCA+TGG | - | chr3_1:91837923-91837942 | Msa0387760:intron | 20.0% |
| !!! | ATTTGTTAATATAACCTTTC+TGG | - | chr3_1:91838460-91838479 | Msa0387760:CDS | 20.0% |
| ! | GAAAAGCTAAAAACTGAAAA+TGG | + | chr3_1:91833770-91833789 | None:intergenic | 25.0% |
| ! | GCAGTAATGAAGTTAAATAT+TGG | - | chr3_1:91833847-91833866 | Msa0387760:intron | 25.0% |
| !!! | TTCATTTCAGACATTTTGAT+TGG | - | chr3_1:91833952-91833971 | Msa0387760:intron | 25.0% |
| !!! | TGCTTGTATTAATTGATTTG+GGG | - | chr3_1:91834054-91834073 | Msa0387760:CDS | 25.0% |
| !!! | TTTAGTCTTAAATGTGTAAC+CGG | - | chr3_1:91834148-91834167 | Msa0387760:intron | 25.0% |
| ! | TGAAGAACTATTATTGTTAC+CGG | + | chr3_1:91834170-91834189 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr3_1:91834384-91834403 | Msa0387760:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3_1:91834494-91834513 | Msa0387760:CDS | 25.0% |
| !! | AAGCATAGATTTTACAAAAG+AGG | - | chr3_1:91835259-91835278 | Msa0387760:intron | 25.0% |
| ! | ATATAATTCAAACATCTCTC+GGG | - | chr3_1:91835290-91835309 | Msa0387760:intron | 25.0% |
| ! | TAATATGTTTGACATTAGAG+GGG | - | chr3_1:91835334-91835353 | Msa0387760:intron | 25.0% |
| ! | TGTAATTTAAGCATCTCTTA+TGG | - | chr3_1:91835365-91835384 | Msa0387760:intron | 25.0% |
| ! | GTAATTTAAGCATCTCTTAT+GGG | - | chr3_1:91835366-91835385 | Msa0387760:intron | 25.0% |
| ! | AATAAAAACCAAGAGCAAAA+TGG | - | chr3_1:91835870-91835889 | Msa0387760:intron | 25.0% |
| ! | ATAAAAACCAAGAGCAAAAT+GGG | - | chr3_1:91835871-91835890 | Msa0387760:intron | 25.0% |
| !!! | TTATTTTGAACGAATGCAAA+AGG | - | chr3_1:91835894-91835913 | Msa0387760:intron | 25.0% |
| ! | TAGTAGCAGTATATGATTAT+TGG | - | chr3_1:91835988-91836007 | Msa0387760:intron | 25.0% |
| ! | TGTTTATTTGAACATGCATA+AGG | + | chr3_1:91837064-91837083 | None:intergenic | 25.0% |
| !!! | TCCTCAGTTTTTCAAATTTT+TGG | - | chr3_1:91837215-91837234 | Msa0387760:intron | 25.0% |
| ! | ACCAAAAATTTGAAAAACTG+AGG | + | chr3_1:91837219-91837238 | None:intergenic | 25.0% |
| !!! | TTCAAATTTTTGGTTCTAGT+TGG | - | chr3_1:91837225-91837244 | Msa0387760:intron | 25.0% |
| !! | CATTTTTCCAAGTTTATCAT+CGG | - | chr3_1:91837383-91837402 | Msa0387760:intron | 25.0% |
| !!! | ATAATTTTAACAAAGCTTCC+AGG | - | chr3_1:91837639-91837658 | Msa0387760:intron | 25.0% |
| ! | ATTATTCTTAGTCAGAAAAG+AGG | + | chr3_1:91837914-91837933 | None:intergenic | 25.0% |
| ! | ATTAAAACTACAAAGTTAGC+TGG | + | chr3_1:91838088-91838107 | None:intergenic | 25.0% |
| ! | AATTTGAAGATTGTTTACTC+AGG | - | chr3_1:91838277-91838296 | Msa0387760:CDS | 25.0% |
| !! | GTGTTTCATATACAATTTTG+CGG | - | chr3_1:91838436-91838455 | Msa0387760:CDS | 25.0% |
| !! | TGTTTCATATACAATTTTGC+GGG | - | chr3_1:91838437-91838456 | Msa0387760:CDS | 25.0% |
| !! | ATTGATAATTTGTTCGAACC+AGG | - | chr3_1:91833534-91833553 | Msa0387760:CDS | 30.0% |
| !! | TTGATAATTTGTTCGAACCA+GGG | - | chr3_1:91833535-91833554 | Msa0387760:CDS | 30.0% |
| TAAAAACTGAAAATGGCGTT+TGG | + | chr3_1:91833763-91833782 | None:intergenic | 30.0% | |
| ! | TTTGGACATTGATGTGTTTT+TGG | - | chr3_1:91833911-91833930 | Msa0387760:intron | 30.0% |
| !! | GCTTGTATTAATTGATTTGG+GGG | - | chr3_1:91834055-91834074 | Msa0387760:CDS | 30.0% |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr3_1:91834321-91834340 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr3_1:91834369-91834388 | Msa0387760:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3_1:91834472-91834491 | Msa0387760:CDS | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3_1:91834473-91834492 | Msa0387760:CDS | 30.0% |
| ACATTGAAGGACTATTAATG+TGG | - | chr3_1:91834671-91834690 | Msa0387760:intron | 30.0% | |
| TGGCTATTCATTACATATTC+AGG | - | chr3_1:91834691-91834710 | Msa0387760:intron | 30.0% | |
| GGCTATTCATTACATATTCA+GGG | - | chr3_1:91834692-91834711 | Msa0387760:intron | 30.0% | |
| GTATAAAATGTGGAGAAAAG+GGG | + | chr3_1:91835203-91835222 | None:intergenic | 30.0% | |
| GGTATAAAATGTGGAGAAAA+GGG | + | chr3_1:91835204-91835223 | None:intergenic | 30.0% | |
| AGGTATAAAATGTGGAGAAA+AGG | + | chr3_1:91835205-91835224 | None:intergenic | 30.0% | |
| ! | TAGATTTTACAAAAGAGGAG+AGG | - | chr3_1:91835264-91835283 | Msa0387760:intron | 30.0% |
| ! | AGATTTTACAAAAGAGGAGA+GGG | - | chr3_1:91835265-91835284 | Msa0387760:intron | 30.0% |
| TATAATTCAAACATCTCTCG+GGG | - | chr3_1:91835291-91835310 | Msa0387760:intron | 30.0% | |
| !!! | TTGAAGTTTTAGCTATGAGT+TGG | - | chr3_1:91835527-91835546 | Msa0387760:intron | 30.0% |
| ! | GAAGTCAATTTTCCAACATT+TGG | + | chr3_1:91835691-91835710 | None:intergenic | 30.0% |
| CTTCATTCTTGGATATTACA+AGG | - | chr3_1:91835770-91835789 | Msa0387760:CDS | 30.0% | |
| !! | TCTTGGTTTTTATTTCAGTG+TGG | + | chr3_1:91835864-91835883 | None:intergenic | 30.0% |
| ! | AAAATAACCCATTTTGCTCT+TGG | + | chr3_1:91835881-91835900 | None:intergenic | 30.0% |
| !! | AAACTAATGGAAAGTACTCA+TGG | + | chr3_1:91835945-91835964 | None:intergenic | 30.0% |
| TTTCTCAGCATACAAACTAA+TGG | + | chr3_1:91835958-91835977 | None:intergenic | 30.0% | |
| TGTGATACAATTTGAATGGA+TGG | - | chr3_1:91836579-91836598 | Msa0387760:intron | 30.0% | |
| ATACAATTTGAATGGATGGA+TGG | - | chr3_1:91836583-91836602 | Msa0387760:intron | 30.0% | |
| !! | CATTGTTTCTCTTTTTCTTC+CGG | - | chr3_1:91836797-91836816 | Msa0387760:intron | 30.0% |
| GTTATCTCTTCCTACTTAAA+AGG | - | chr3_1:91836855-91836874 | Msa0387760:intron | 30.0% | |
| CTATGTAGAACTTGCAAAAT+GGG | - | chr3_1:91837013-91837032 | Msa0387760:intron | 30.0% | |
| TATGTAGAACTTGCAAAATG+GGG | - | chr3_1:91837014-91837033 | Msa0387760:intron | 30.0% | |
| AAATGTGTGCATGATATTGA+TGG | - | chr3_1:91837281-91837300 | Msa0387760:intron | 30.0% | |
| AATGTGTGCATGATATTGAT+GGG | - | chr3_1:91837282-91837301 | Msa0387760:intron | 30.0% | |
| TATATCTCCGATGATAAACT+TGG | + | chr3_1:91837393-91837412 | None:intergenic | 30.0% | |
| ! | GAAGATGTTATGATGTGTTT+TGG | + | chr3_1:91837483-91837502 | None:intergenic | 30.0% |
| !! | ATAACTTAGGTTGATGAATC+AGG | + | chr3_1:91837621-91837640 | None:intergenic | 30.0% |
| AAATTATCACCAAAACAACC+TGG | + | chr3_1:91837660-91837679 | None:intergenic | 30.0% | |
| !! | TGTTTTTCAATTATCACCCA+TGG | + | chr3_1:91837809-91837828 | None:intergenic | 30.0% |
| !!! | TAATTCTTTTTTGCCTCAGT+TGG | + | chr3_1:91837966-91837985 | None:intergenic | 30.0% |
| TTAGCTGGAAGGTTATAATA+AGG | + | chr3_1:91838073-91838092 | None:intergenic | 30.0% | |
| ! | CGTTTATGAAATCTGAAACT+AGG | - | chr3_1:91838402-91838421 | Msa0387760:CDS | 30.0% |
| ! | AATCTGAAACTAGGTTCTAT+AGG | - | chr3_1:91838411-91838430 | Msa0387760:CDS | 30.0% |
| TAAAATTGAAAGTGACTGCA+TGG | + | chr3_1:91838558-91838577 | None:intergenic | 30.0% | |
| TTTCAACGCTTAGTGAAGAA+GGG | + | chr3_1:91833278-91833297 | None:intergenic | 35.0% | |
| ATTTCAACGCTTAGTGAAGA+AGG | + | chr3_1:91833279-91833298 | None:intergenic | 35.0% | |
| !! | TTCTTCACTAAGCGTTGAAA+TGG | - | chr3_1:91833278-91833297 | Msa0387760:three_prime_UTR | 35.0% |
| ATCTTCGTAGTTACGAAACT+CGG | + | chr3_1:91833436-91833455 | None:intergenic | 35.0% | |
| AAACTCTTGAAGATCTTCCA+TGG | + | chr3_1:91833571-91833590 | None:intergenic | 35.0% | |
| ! | ATCTTCAAGAGTTTGAGACA+CGG | - | chr3_1:91833577-91833596 | Msa0387760:CDS | 35.0% |
| !!! | ACATTTTGATTGGTTGTGTG+TGG | - | chr3_1:91833962-91833981 | Msa0387760:intron | 35.0% |
| TTGGTTGTGTGTGGTTTAAA+TGG | - | chr3_1:91833971-91833990 | Msa0387760:intron | 35.0% | |
| !! | AATTGATTTGGGGGATTTGA+AGG | - | chr3_1:91834064-91834083 | Msa0387760:CDS | 35.0% |
| !! | ATTGATTTGGGGGATTTGAA+GGG | - | chr3_1:91834065-91834084 | Msa0387760:CDS | 35.0% |
| !! | TCCATATGGGTGTTTTTGTA+AGG | - | chr3_1:91834113-91834132 | Msa0387760:intron | 35.0% |
| !! | CCATATGGGTGTTTTTGTAA+GGG | - | chr3_1:91834114-91834133 | Msa0387760:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr3_1:91834508-91834527 | Msa0387760:CDS | 35.0% | |
| ! | ATACGAAGCAGTAGTCATTT+TGG | + | chr3_1:91834719-91834738 | None:intergenic | 35.0% |
| !!! | GTTAGTGTGAGGTCTTTTTT+TGG | - | chr3_1:91834873-91834892 | Msa0387760:intron | 35.0% |
| ! | TAGTTTTTGTCTGAACCTTG+AGG | - | chr3_1:91834909-91834928 | Msa0387760:intron | 35.0% |
| AAGTTTAAGTGAGCTGAGTT+CGG | + | chr3_1:91834946-91834965 | None:intergenic | 35.0% | |
| ATAATTCAAACATCTCTCGG+GGG | - | chr3_1:91835292-91835311 | Msa0387760:intron | 35.0% | |
| TTTAAGCATCTCTTATGGGA+AGG | - | chr3_1:91835370-91835389 | Msa0387760:intron | 35.0% | |
| TTAAGCATCTCTTATGGGAA+GGG | - | chr3_1:91835371-91835390 | Msa0387760:intron | 35.0% | |
| TGTGTACCTTTATACTGTCT+TGG | - | chr3_1:91835656-91835675 | Msa0387760:intron | 35.0% | |
| ATGTGACCAAGACAGTATAA+AGG | + | chr3_1:91835665-91835684 | None:intergenic | 35.0% | |
| TTTATACTGTCTTGGTCACA+TGG | - | chr3_1:91835664-91835683 | Msa0387760:intron | 35.0% | |
| TTATACTGTCTTGGTCACAT+GGG | - | chr3_1:91835665-91835684 | Msa0387760:intron | 35.0% | |
| CATTCTTGGATATTACAAGG+AGG | - | chr3_1:91835773-91835792 | Msa0387760:CDS | 35.0% | |
| AGGAGAATAGAATCACAATC+TGG | - | chr3_1:91835793-91835812 | Msa0387760:CDS | 35.0% | |
| AATAGAATCACAATCTGGAC+AGG | - | chr3_1:91835798-91835817 | Msa0387760:CDS | 35.0% | |
| !! | TTGTTTCTGTGCAATAGTAG+AGG | - | chr3_1:91836224-91836243 | Msa0387760:CDS | 35.0% |
| GTAGAGGTTGACACTAAAAT+TGG | - | chr3_1:91836240-91836259 | Msa0387760:CDS | 35.0% | |
| !! | TGGTTCAATTTTGACAACCA+TGG | + | chr3_1:91836370-91836389 | None:intergenic | 35.0% |
| TTTCTGGATGTGCTAACAAA+AGG | - | chr3_1:91836639-91836658 | Msa0387760:intron | 35.0% | |
| TTCCGGTAGATCTATTGATA+TGG | - | chr3_1:91836814-91836833 | Msa0387760:intron | 35.0% | |
| TAGATACAACCCTTCTAGTA+AGG | - | chr3_1:91836951-91836970 | Msa0387760:intron | 35.0% | |
| AGATACAACCCTTCTAGTAA+GGG | - | chr3_1:91836952-91836971 | Msa0387760:intron | 35.0% | |
| ! | CCATTTTGCAAGTTCTACAT+AGG | + | chr3_1:91837015-91837034 | None:intergenic | 35.0% |
| CCTATGTAGAACTTGCAAAA+TGG | - | chr3_1:91837012-91837031 | Msa0387760:intron | 35.0% | |
| !! | GGTTAGAGAAAGTATTAAGC+AGG | + | chr3_1:91837043-91837062 | None:intergenic | 35.0% |
| AACAATTGCACACTAAGTGA+AGG | + | chr3_1:91837150-91837169 | None:intergenic | 35.0% | |
| TCAACTCTTTATCTTCCACA+AGG | + | chr3_1:91837251-91837270 | None:intergenic | 35.0% | |
| AAAAACTCAACAGCTGTTGA+TGG | + | chr3_1:91837330-91837349 | None:intergenic | 35.0% | |
| TATCATCGGAGATATATACC+AGG | - | chr3_1:91837397-91837416 | Msa0387760:intron | 35.0% | |
| ATCATCGGAGATATATACCA+GGG | - | chr3_1:91837398-91837417 | Msa0387760:intron | 35.0% | |
| CACATCATAACATCTTCAAC+TGG | - | chr3_1:91837486-91837505 | Msa0387760:intron | 35.0% | |
| AACCCACAATGCTTAGAAAA+AGG | - | chr3_1:91837688-91837707 | Msa0387760:intron | 35.0% | |
| !! | AGCCTTTTTCTAAGCATTGT+GGG | + | chr3_1:91837693-91837712 | None:intergenic | 35.0% |
| !! | AAGCCTTTTTCTAAGCATTG+TGG | + | chr3_1:91837694-91837713 | None:intergenic | 35.0% |
| CAATGCTTAGAAAAAGGCTT+TGG | - | chr3_1:91837694-91837713 | Msa0387760:intron | 35.0% | |
| TATACAGAATTCTCTTGCCT+AGG | + | chr3_1:91837729-91837748 | None:intergenic | 35.0% | |
| TAGAAGCTTACCTCAGATTT+AGG | + | chr3_1:91837875-91837894 | None:intergenic | 35.0% | |
| ATTCTTAGTCAGAAAAGAGG+AGG | + | chr3_1:91837911-91837930 | None:intergenic | 35.0% | |
| ! | ATCAATTTTATGCTAGCTCC+TGG | - | chr3_1:91838011-91838030 | Msa0387760:intron | 35.0% |
| AAACTACAAAGTTAGCTGGA+AGG | + | chr3_1:91838084-91838103 | None:intergenic | 35.0% | |
| ACCACTGAGTTCACTTAATT+GGG | - | chr3_1:91838118-91838137 | Msa0387760:intron | 35.0% | |
| TGCTATGAGGGATTTGTATT+CGG | - | chr3_1:91838324-91838343 | Msa0387760:CDS | 35.0% | |
| AACTGCATGTCTTCGTTCTT+CGG | + | chr3_1:91833381-91833400 | None:intergenic | 40.0% | |
| GTTAATCGTTCACGAACAGA+AGG | - | chr3_1:91833398-91833417 | Msa0387760:three_prime_UTR | 40.0% | |
| CAACAGCATCATAGAAACGA+AGG | + | chr3_1:91833698-91833717 | None:intergenic | 40.0% | |
| CTATGATGCTGTTGTCGATA+CGG | - | chr3_1:91833704-91833723 | Msa0387760:intron | 40.0% | |
| TCCATCGTTATGCATCCATA+TGG | - | chr3_1:91834099-91834118 | Msa0387760:CDS | 40.0% | |
| CCATCGTTATGCATCCATAT+GGG | - | chr3_1:91834100-91834119 | Msa0387760:CDS | 40.0% | |
| CCCTTACAAAAACACCCATA+TGG | + | chr3_1:91834117-91834136 | None:intergenic | 40.0% | |
| TCGGTACTACTTTAACGCAA+TGG | + | chr3_1:91834247-91834266 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr3_1:91834318-91834337 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr3_1:91834509-91834528 | Msa0387760:CDS | 40.0% | |
| TGACTAACAGTGCACAATCA+AGG | - | chr3_1:91834629-91834648 | Msa0387760:CDS | 40.0% | |
| ! | TCGATGAAAATCGACTCACT+TGG | - | chr3_1:91834810-91834829 | Msa0387760:intron | 40.0% |
| GATTGTGTATTCAACTCTCG+CGG | - | chr3_1:91834851-91834870 | Msa0387760:intron | 40.0% | |
| !! | ATACCTTACATTTTGGTCGC+TGG | - | chr3_1:91835219-91835238 | Msa0387760:intron | 40.0% |
| !! | TACCTTACATTTTGGTCGCT+GGG | - | chr3_1:91835220-91835239 | Msa0387760:intron | 40.0% |
| CGCTGGGCTATTAGAAATAA+AGG | - | chr3_1:91835236-91835255 | Msa0387760:intron | 40.0% | |
| ATGTTTGACATTAGAGGGGA+AGG | - | chr3_1:91835338-91835357 | Msa0387760:intron | 40.0% | |
| TGTTTGACATTAGAGGGGAA+GGG | - | chr3_1:91835339-91835358 | Msa0387760:intron | 40.0% | |
| ATCACAATCTGGACAGGAAA+TGG | - | chr3_1:91835804-91835823 | Msa0387760:CDS | 40.0% | |
| ! | AAACAAACCTTCTGGAGAAC+TGG | + | chr3_1:91836210-91836229 | None:intergenic | 40.0% |
| TTGCACAGAAACAAACCTTC+TGG | + | chr3_1:91836218-91836237 | None:intergenic | 40.0% | |
| AGATCCTAACAGAGTCACAA+GGG | + | chr3_1:91836341-91836360 | None:intergenic | 40.0% | |
| AAGATCCTAACAGAGTCACA+AGG | + | chr3_1:91836342-91836361 | None:intergenic | 40.0% | |
| TTGTGACTCTGTTAGGATCT+TGG | - | chr3_1:91836341-91836360 | Msa0387760:intron | 40.0% | |
| ! | TGTTAGGATCTTGGTAACCA+TGG | - | chr3_1:91836350-91836369 | Msa0387760:intron | 40.0% |
| AGAAGCTGACATGATTCTAC+AGG | + | chr3_1:91836432-91836451 | None:intergenic | 40.0% | |
| AGAATCATGTCAGCTTCTAC+TGG | - | chr3_1:91836434-91836453 | Msa0387760:intron | 40.0% | |
| CACTCATCTCAAAAGATGCA+GGG | + | chr3_1:91836556-91836575 | None:intergenic | 40.0% | |
| !!! | CTGCATCTTTTGAGATGAGT+GGG | - | chr3_1:91836555-91836574 | Msa0387760:intron | 40.0% |
| GGGCTGTGATACAATTTGAA+TGG | - | chr3_1:91836575-91836594 | Msa0387760:intron | 40.0% | |
| ACAAAAGGAATTCGACTGCT+TGG | - | chr3_1:91836654-91836673 | Msa0387760:intron | 40.0% | |
| GGCCATATCAATAGATCTAC+CGG | + | chr3_1:91836819-91836838 | None:intergenic | 40.0% | |
| AAGACCATCCCTTACTAGAA+GGG | + | chr3_1:91836963-91836982 | None:intergenic | 40.0% | |
| TAAGACCATCCCTTACTAGA+AGG | + | chr3_1:91836964-91836983 | None:intergenic | 40.0% | |
| TGATAAATGGGTGTAGAGCA+TGG | + | chr3_1:91837111-91837130 | None:intergenic | 40.0% | |
| TCATCGGAGATATATACCAG+GGG | - | chr3_1:91837399-91837418 | Msa0387760:intron | 40.0% | |
| CATCATGTTGCAAACTGAGA+GGG | - | chr3_1:91837425-91837444 | Msa0387760:intron | 40.0% | |
| TCATAACATCTTCAACTGGC+AGG | - | chr3_1:91837490-91837509 | Msa0387760:intron | 40.0% | |
| AATCAGGCATTCACTCTTCA+CGG | + | chr3_1:91837605-91837624 | None:intergenic | 40.0% | |
| ! | ACAAAGCTTCCAGGTTGTTT+TGG | - | chr3_1:91837648-91837667 | Msa0387760:intron | 40.0% |
| AGACAGTGAAGAGGTTTGAA+TGG | + | chr3_1:91837777-91837796 | None:intergenic | 40.0% | |
| ! | AACGCTGTTTCCTAAATCTG+AGG | - | chr3_1:91837862-91837881 | Msa0387760:intron | 40.0% |
| TTAGTCAGAAAAGAGGAGGA+AGG | + | chr3_1:91837907-91837926 | None:intergenic | 40.0% | |
| AATAGCATGGTAGTAGAGCA+TGG | - | chr3_1:91837936-91837955 | Msa0387760:intron | 40.0% | |
| !!! | TCTTTTTTGCCTCAGTTGGT+CGG | + | chr3_1:91837962-91837981 | None:intergenic | 40.0% |
| CAATTAAGTGAACTCAGTGG+TGG | + | chr3_1:91838119-91838138 | None:intergenic | 40.0% | |
| CACCACTGAGTTCACTTAAT+TGG | - | chr3_1:91838117-91838136 | Msa0387760:intron | 40.0% | |
| ACTTTACTCTTTCCATCCTG+TGG | + | chr3_1:91838250-91838269 | None:intergenic | 40.0% | |
| ATACAAATCCCTCATAGCAC+TGG | + | chr3_1:91838323-91838342 | None:intergenic | 40.0% | |
| !! | AATTTGCTGATCACCAAGAG+CGG | - | chr3_1:91838347-91838366 | Msa0387760:CDS | 40.0% |
| ! | AAGAAGCTTGCATTTCTGGA+AGG | - | chr3_1:91838376-91838395 | Msa0387760:CDS | 40.0% |
| ATGGATTCTTATCTCAGGTG+AGG | + | chr3_1:91838539-91838558 | None:intergenic | 40.0% | |
| ACTGCATGGATTCTTATCTC+AGG | + | chr3_1:91838544-91838563 | None:intergenic | 40.0% | |
| !! | GGTTTGTTGAGAAGCTGTGA+GGG | + | chr3_1:91833346-91833365 | None:intergenic | 45.0% |
| !! | GTTCTTCGGTGTCATGGTTT+CGG | + | chr3_1:91833367-91833386 | None:intergenic | 45.0% |
| GTAACTACGAAGATGACGCT+TGG | - | chr3_1:91833442-91833461 | Msa0387760:three_prime_UTR | 45.0% | |
| TCCTTCCAACGTAACACTGA+CGG | + | chr3_1:91833472-91833491 | None:intergenic | 45.0% | |
| !! | ACCAGGGTTTTTCAACTCCA+TGG | - | chr3_1:91833551-91833570 | Msa0387760:CDS | 45.0% |
| TCCATGGAGTTGAAAAACCC+TGG | + | chr3_1:91833555-91833574 | None:intergenic | 45.0% | |
| GTTCAGACCTCTTTCTGTTC+AGG | - | chr3_1:91833599-91833618 | Msa0387760:CDS | 45.0% | |
| ! | ACCTCTTTCTGTTCAGGTTC+AGG | - | chr3_1:91833605-91833624 | Msa0387760:CDS | 45.0% |
| TCCTGAACCTGAACAGAAAG+AGG | + | chr3_1:91833609-91833628 | None:intergenic | 45.0% | |
| CCCATATGGATGCATAACGA+TGG | + | chr3_1:91834103-91834122 | None:intergenic | 45.0% | |
| TATAAATACTCCCTCCGTCC+CGG | + | chr3_1:91834530-91834549 | None:intergenic | 45.0% | |
| !! | GGACGGAGGGAGTATTTATA+AGG | - | chr3_1:91834530-91834549 | Msa0387760:CDS | 45.0% |
| GTTTGACATTAGAGGGGAAG+GGG | - | chr3_1:91835340-91835359 | Msa0387760:intron | 45.0% | |
| AGCTTTGCATTGCCATTCTC+TGG | - | chr3_1:91835468-91835487 | Msa0387760:intron | 45.0% | |
| GCTTTGCATTGCCATTCTCT+GGG | - | chr3_1:91835469-91835488 | Msa0387760:intron | 45.0% | |
| ACAGCAGTTATCCCAGAGAA+TGG | + | chr3_1:91835483-91835502 | None:intergenic | 45.0% | |
| GCTGGATCATACTCTAGTAC+AGG | + | chr3_1:91835745-91835764 | None:intergenic | 45.0% | |
| ACTAGAGTATGATCCAGCTG+TGG | - | chr3_1:91835747-91835766 | Msa0387760:CDS | 45.0% | |
| ACAATCTGGACAGGAAATGG+TGG | - | chr3_1:91835807-91835826 | Msa0387760:CDS | 45.0% | |
| !!! | AAGCGATCAGTTTTGGGTAC+CGG | - | chr3_1:91836071-91836090 | Msa0387760:CDS | 45.0% |
| ! | AGGTGCCAAGCAAACTGTTT+TGG | - | chr3_1:91836103-91836122 | Msa0387760:CDS | 45.0% |
| ! | GGTGCCAAGCAAACTGTTTT+GGG | - | chr3_1:91836104-91836123 | Msa0387760:CDS | 45.0% |
| ATTGCCCTTGTGACTCTGTT+AGG | - | chr3_1:91836334-91836353 | Msa0387760:intron | 45.0% | |
| CTGACATGATTCTACAGGTC+TGG | + | chr3_1:91836427-91836446 | None:intergenic | 45.0% | |
| CCACTCATCTCAAAAGATGC+AGG | + | chr3_1:91836557-91836576 | None:intergenic | 45.0% | |
| !!! | CCTGCATCTTTTGAGATGAG+TGG | - | chr3_1:91836554-91836573 | Msa0387760:intron | 45.0% |
| ACAACCCTTCTAGTAAGGGA+TGG | - | chr3_1:91836956-91836975 | Msa0387760:intron | 45.0% | |
| GTTCTACATAGGACCAAGCA+AGG | + | chr3_1:91837004-91837023 | None:intergenic | 45.0% | |
| TAAATGGGTGTAGAGCATGG+TGG | + | chr3_1:91837108-91837127 | None:intergenic | 45.0% | |
| !! | TTTGGTTCTAGTTGGCCTTG+TGG | - | chr3_1:91837233-91837252 | Msa0387760:intron | 45.0% |
| CCTCTCAGTTTGCAACATGA+TGG | + | chr3_1:91837427-91837446 | None:intergenic | 45.0% | |
| CCATCATGTTGCAAACTGAG+AGG | - | chr3_1:91837424-91837443 | Msa0387760:intron | 45.0% | |
| CCTGAAAACAGACAGTGAAG+AGG | + | chr3_1:91837786-91837805 | None:intergenic | 45.0% | |
| ! | CCTCTTCACTGTCTGTTTTC+AGG | - | chr3_1:91837783-91837802 | Msa0387760:intron | 45.0% |
| !! | ACTGTCTGTTTTCAGGCCAT+GGG | - | chr3_1:91837790-91837809 | Msa0387760:intron | 45.0% |
| !! | AAAGGCATCCGTTCTCATCA+GGG | + | chr3_1:91838039-91838058 | None:intergenic | 45.0% |
| !! | TAAAGGCATCCGTTCTCATC+AGG | + | chr3_1:91838040-91838059 | None:intergenic | 45.0% |
| GCCCAATTAAGTGAACTCAG+TGG | + | chr3_1:91838122-91838141 | None:intergenic | 45.0% | |
| AGTTCACTTAATTGGGCACC+AGG | - | chr3_1:91838125-91838144 | Msa0387760:intron | 45.0% | |
| GTTCACTTAATTGGGCACCA+GGG | - | chr3_1:91838126-91838145 | Msa0387760:intron | 45.0% | |
| ! | GTTTTTGCAGAATGCACCAC+AGG | - | chr3_1:91838231-91838250 | Msa0387760:CDS | 45.0% |
| GCACAAGAAGCTTGCATTTC+TGG | - | chr3_1:91838372-91838391 | Msa0387760:CDS | 45.0% | |
| !! | CCTCTGAAGCTATACCAGAA+AGG | + | chr3_1:91838477-91838496 | None:intergenic | 45.0% |
| ! | CCTTTCTGGTATAGCTTCAG+AGG | - | chr3_1:91838474-91838493 | Msa0387760:CDS | 45.0% |
| GACGTCGCGTTTACTAGGTT+GGG | + | chr3_1:91833316-91833335 | None:intergenic | 50.0% | |
| AACACGACGTCGCGTTTACT+AGG | + | chr3_1:91833321-91833340 | None:intergenic | 50.0% | |
| !! | CGGTTTGTTGAGAAGCTGTG+AGG | + | chr3_1:91833347-91833366 | None:intergenic | 50.0% |
| !! | GTCTTCGTTCTTCGGTGTCA+TGG | + | chr3_1:91833373-91833392 | None:intergenic | 50.0% |
| GTACACCGTCAGTGTTACGT+TGG | - | chr3_1:91833464-91833483 | Msa0387760:three_prime_UTR | 50.0% | |
| ACCGTCAGTGTTACGTTGGA+AGG | - | chr3_1:91833468-91833487 | Msa0387760:three_prime_UTR | 50.0% | |
| AGGTTCAGGATCACGAGTGT+CGG | - | chr3_1:91833619-91833638 | Msa0387760:CDS | 50.0% | |
| GAAGCACAAACCCTAACACC+TGG | + | chr3_1:91833654-91833673 | None:intergenic | 50.0% | |
| TGTTAGGGTTTGTGCTTCGC+AGG | - | chr3_1:91833656-91833675 | Msa0387760:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr3_1:91834513-91834532 | Msa0387760:CDS | 50.0% | |
| TCGGATCAAGAGAGACCTCA+AGG | + | chr3_1:91834927-91834946 | None:intergenic | 50.0% | |
| AGCCCAGCGACCAAAATGTA+AGG | + | chr3_1:91835225-91835244 | None:intergenic | 50.0% | |
| ATTCAAACATCTCTCGGGGG+AGG | - | chr3_1:91835295-91835314 | Msa0387760:intron | 50.0% | |
| ! | TAGCAGCAGCATCTAGGATC+AGG | - | chr3_1:91835502-91835521 | Msa0387760:intron | 50.0% |
| TGGTCACATGGGCCAAATGT+TGG | - | chr3_1:91835676-91835695 | Msa0387760:intron | 50.0% | |
| ACTCTAGTACAGGCTGCACA+AGG | + | chr3_1:91835735-91835754 | None:intergenic | 50.0% | |
| TCCAGCTGTGGCTTCATTCT+TGG | - | chr3_1:91835759-91835778 | Msa0387760:CDS | 50.0% | |
| TCCAAGAATGAAGCCACAGC+TGG | + | chr3_1:91835763-91835782 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGTACTGCAACAC+AGG | - | chr3_1:91835823-91835842 | Msa0387760:CDS | 50.0% |
| ! | GTTTTCGCTGGAACTGGAGA+GGG | + | chr3_1:91836043-91836062 | None:intergenic | 50.0% |
| GGTACCCAAAACTGATCGCT+TGG | + | chr3_1:91836072-91836091 | None:intergenic | 50.0% | |
| !! | TTGGGTACCGGTTCTTCTGA+AGG | - | chr3_1:91836083-91836102 | Msa0387760:CDS | 50.0% |
| CTTGGCACCTTCAGAAGAAC+CGG | + | chr3_1:91836093-91836112 | None:intergenic | 50.0% | |
| ! | GGCACCCAAAACAGTTTGCT+TGG | + | chr3_1:91836111-91836130 | None:intergenic | 50.0% |
| TTGGGTGCCAGTTCTACTGA+AGG | - | chr3_1:91836161-91836180 | Msa0387760:CDS | 50.0% | |
| TGGGTGCCAGTTCTACTGAA+GGG | - | chr3_1:91836162-91836181 | Msa0387760:CDS | 50.0% | |
| CTCAAAAGATGCAGGGCAAG+AGG | + | chr3_1:91836549-91836568 | None:intergenic | 50.0% | |
| ! | AGTAAGGGATGGTCTTACCC+TGG | - | chr3_1:91836967-91836986 | Msa0387760:intron | 50.0% |
| ! | GTAAGGGATGGTCTTACCCT+GGG | - | chr3_1:91836968-91836987 | Msa0387760:intron | 50.0% |
| ! | ATGGTCTTACCCTGGGACTT+GGG | - | chr3_1:91836975-91836994 | Msa0387760:intron | 50.0% |
| ! | AGCATGGTGGAGAGCAAAGA+AGG | + | chr3_1:91837095-91837114 | None:intergenic | 50.0% |
| !! | CACTGTCTGTTTTCAGGCCA+TGG | - | chr3_1:91837789-91837808 | Msa0387760:intron | 50.0% |
| ! | AAGGCATCCGTTCTCATCAG+GGG | + | chr3_1:91838038-91838057 | None:intergenic | 50.0% |
| TAATCAAACTCTGCAGGCCC+TGG | + | chr3_1:91838146-91838165 | None:intergenic | 50.0% | |
| AGGGCCTGCAGAGTTTGATT+AGG | - | chr3_1:91838145-91838164 | Msa0387760:intron | 50.0% | |
| TGCGCCTAATCAAACTCTGC+AGG | + | chr3_1:91838152-91838171 | None:intergenic | 50.0% | |
| TTGCAGAATGCACCACAGGA+TGG | - | chr3_1:91838235-91838254 | Msa0387760:CDS | 50.0% | |
| TCAAGACAGCCAGTGCTATG+AGG | - | chr3_1:91838311-91838330 | Msa0387760:CDS | 50.0% | |
| CAAGACAGCCAGTGCTATGA+GGG | - | chr3_1:91838312-91838331 | Msa0387760:CDS | 50.0% | |
| CGACGTCGCGTTTACTAGGT+TGG | + | chr3_1:91833317-91833336 | None:intergenic | 55.0% | |
| GGTTCAGGATCACGAGTGTC+GGG | - | chr3_1:91833620-91833639 | Msa0387760:CDS | 55.0% | |
| ! | GGAGCTGGTTCCAGGTGTTA+GGG | - | chr3_1:91833641-91833660 | Msa0387760:CDS | 55.0% |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr3_1:91834517-91834536 | Msa0387760:CDS | 55.0% | |
| CAACTCTCGCGGTTAGTGTG+AGG | - | chr3_1:91834862-91834881 | Msa0387760:intron | 55.0% | |
| CTGCTGTAGCAGCAGCATCT+AGG | - | chr3_1:91835496-91835515 | Msa0387760:intron | 55.0% | |
| ! | CGTTTTCGCTGGAACTGGAG+AGG | + | chr3_1:91836044-91836063 | None:intergenic | 55.0% |
| TCCAGTTCCAGCGAAAACGC+CGG | - | chr3_1:91836045-91836064 | Msa0387760:CDS | 55.0% | |
| CCAAAACTGATCGCTTGGCC+CGG | + | chr3_1:91836067-91836086 | None:intergenic | 55.0% | |
| ! | CGGGCCAAGCGATCAGTTTT+GGG | - | chr3_1:91836065-91836084 | Msa0387760:CDS | 55.0% |
| TTGGGTGCCAGTTCTCCTGA+AGG | - | chr3_1:91836122-91836141 | Msa0387760:CDS | 55.0% | |
| TGGGTGCCAGTTCTCCTGAA+GGG | - | chr3_1:91836123-91836142 | Msa0387760:CDS | 55.0% | |
| ! | AGGGGCCAAGCGATCTGTTT+TGG | - | chr3_1:91836142-91836161 | Msa0387760:CDS | 55.0% |
| ! | GGGGCCAAGCGATCTGTTTT+GGG | - | chr3_1:91836143-91836162 | Msa0387760:CDS | 55.0% |
| GGCACCCAAAACAGATCGCT+TGG | + | chr3_1:91836150-91836169 | None:intergenic | 55.0% | |
| GGGTGCCAGTTCTACTGAAG+GGG | - | chr3_1:91836163-91836182 | Msa0387760:CDS | 55.0% | |
| CTTGGCCCCTTCAGTAGAAC+TGG | + | chr3_1:91836171-91836190 | None:intergenic | 55.0% | |
| ! | AGGGGCCAAGCGATCTGTTT+TGG | - | chr3_1:91836142-91836161 | Msa0387760:CDS | 55.0% |
| ! | GGGGCCAAGCGATCTGTTTT+GGG | - | chr3_1:91836143-91836162 | Msa0387760:CDS | 55.0% |
| GGCACCCAAAACAGATCGCT+TGG | + | chr3_1:91836150-91836169 | None:intergenic | 55.0% | |
| TTGGGTGCCAGTTCTCCAGA+AGG | - | chr3_1:91836200-91836219 | Msa0387760:CDS | 55.0% | |
| ! | GATGGTCTTACCCTGGGACT+TGG | - | chr3_1:91836974-91836993 | Msa0387760:intron | 55.0% |
| TTGCAACATGATGGCACCCC+TGG | + | chr3_1:91837418-91837437 | None:intergenic | 55.0% | |
| !! | GGCTTTGGATCTGCAAGCCT+AGG | - | chr3_1:91837709-91837728 | Msa0387760:intron | 55.0% |
| TCCTGGTCCCCTGATGAGAA+CGG | - | chr3_1:91838028-91838047 | Msa0387760:intron | 55.0% | |
| ! | GGGAGCTGGTTCCAGGTGTT+AGG | - | chr3_1:91833640-91833659 | Msa0387760:CDS | 60.0% |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3_1:91834516-91834535 | Msa0387760:CDS | 60.0% | |
| CCAGTTCCAGCGAAAACGCC+GGG | - | chr3_1:91836046-91836065 | Msa0387760:CDS | 60.0% | |
| ! | CCGGGCCAAGCGATCAGTTT+TGG | - | chr3_1:91836064-91836083 | Msa0387760:CDS | 60.0% |
| GGGTGCCAGTTCTCCTGAAG+GGG | - | chr3_1:91836124-91836143 | Msa0387760:CDS | 60.0% | |
| CTTGGCCCCTTCAGGAGAAC+TGG | + | chr3_1:91836132-91836151 | None:intergenic | 60.0% | |
| ACAGATCGCTTGGCCCCTTC+AGG | + | chr3_1:91836140-91836159 | None:intergenic | 60.0% | |
| GCAAGGTCTCCCAAGTCCCA+GGG | + | chr3_1:91836987-91837006 | None:intergenic | 60.0% | |
| AGCAAGGTCTCCCAAGTCCC+AGG | + | chr3_1:91836988-91837007 | None:intergenic | 60.0% | |
| GGGACTTGGGAGACCTTGCT+TGG | - | chr3_1:91836988-91837007 | Msa0387760:intron | 60.0% | |
| AGAGCATGGCCGACCAACTG+AGG | - | chr3_1:91837950-91837969 | Msa0387760:intron | 60.0% | |
| TCCGTTCTCATCAGGGGACC+AGG | + | chr3_1:91838032-91838051 | None:intergenic | 60.0% | |
| GCTTCTTGTGCAGCCGCTCT+TGG | + | chr3_1:91838363-91838382 | None:intergenic | 60.0% | |
| !! | GGATCACGAGTGTCGGGAGC+TGG | - | chr3_1:91833626-91833645 | Msa0387760:CDS | 65.0% |
| !! | GAGTGTCGGGAGCTGGTTCC+AGG | - | chr3_1:91833633-91833652 | Msa0387760:CDS | 65.0% |
| ! | CCCGGCGTTTTCGCTGGAAC+TGG | + | chr3_1:91836049-91836068 | None:intergenic | 65.0% |
| ! | GCTTGGCCCGGCGTTTTCGC+TGG | + | chr3_1:91836055-91836074 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91833259 | 91838667 | 91833259 | ID=Msa0387760;Name=Msa0387760 |
| chr3_1 | mRNA | 91833259 | 91838667 | 91833259 | ID=Msa0387760-mRNA-1;Parent=Msa0387760;Name=Msa0387760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=38|1|1|1|1|1|6|250|475 |
| chr3_1 | exon | 91833259 | 91833685 | 91833259 | ID=Msa0387760-mRNA-1:exon:25719;Parent=Msa0387760-mRNA-1 |
| chr3_1 | exon | 91834043 | 91834121 | 91834043 | ID=Msa0387760-mRNA-1:exon:25718;Parent=Msa0387760-mRNA-1 |
| chr3_1 | exon | 91834415 | 91834682 | 91834415 | ID=Msa0387760-mRNA-1:exon:25717;Parent=Msa0387760-mRNA-1 |
| chr3_1 | exon | 91835705 | 91835876 | 91835705 | ID=Msa0387760-mRNA-1:exon:25716;Parent=Msa0387760-mRNA-1 |
| chr3_1 | exon | 91836011 | 91836313 | 91836011 | ID=Msa0387760-mRNA-1:exon:25715;Parent=Msa0387760-mRNA-1 |
| chr3_1 | exon | 91838201 | 91838667 | 91838201 | ID=Msa0387760-mRNA-1:exon:25714;Parent=Msa0387760-mRNA-1 |
| chr3_1 | five_prime_UTR | 91838630 | 91838667 | 91838630 | ID=Msa0387760-mRNA-1:five_prime_utr;Parent=Msa0387760-mRNA-1 |
| chr3_1 | CDS | 91838201 | 91838629 | 91838201 | ID=Msa0387760-mRNA-1:cds;Parent=Msa0387760-mRNA-1 |
| chr3_1 | CDS | 91836011 | 91836313 | 91836011 | ID=Msa0387760-mRNA-1:cds;Parent=Msa0387760-mRNA-1 |
| chr3_1 | CDS | 91835705 | 91835876 | 91835705 | ID=Msa0387760-mRNA-1:cds;Parent=Msa0387760-mRNA-1 |
| chr3_1 | CDS | 91834415 | 91834682 | 91834415 | ID=Msa0387760-mRNA-1:cds;Parent=Msa0387760-mRNA-1 |
| chr3_1 | CDS | 91834043 | 91834121 | 91834043 | ID=Msa0387760-mRNA-1:cds;Parent=Msa0387760-mRNA-1 |
| chr3_1 | CDS | 91833509 | 91833685 | 91833509 | ID=Msa0387760-mRNA-1:cds;Parent=Msa0387760-mRNA-1 |
| chr3_1 | three_prime_UTR | 91833259 | 91833508 | 91833259 | ID=Msa0387760-mRNA-1:three_prime_utr;Parent=Msa0387760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
