Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233540 | XP_003593459.2 | 98.462 | 325 | 5 | 0 | 1 | 325 | 14 | 338 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233540 | sp|Q53FA7|QORX_HUMAN | 41.641 | 329 | 185 | 5 | 1 | 323 | 1 | 328 | 9.94e-80 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233540 | A0A396J5U7 | 98.462 | 325 | 5 | 0 | 1 | 325 | 14 | 338 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0233530 | Msa0233540 | 0.815969 | 7.041115e-52 | -8.615850e-47 |
| Msa0233540 | Msa0735660 | 0.805137 | 1.543085e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233540 | MtrunA17_Chr2g0281301 | 98.462 | 325 | 5 | 0 | 1 | 325 | 14 | 338 | 0.0 | 652 |
| Msa0233540 | MtrunA17_Chr2g0281281 | 94.154 | 325 | 19 | 0 | 1 | 325 | 1 | 325 | 0.0 | 618 |
| Msa0233540 | MtrunA17_Chr4g0013331 | 33.129 | 326 | 212 | 4 | 1 | 324 | 52 | 373 | 1.30e-40 | 145 |
| Msa0233540 | MtrunA17_Chr8g0365421 | 30.473 | 338 | 187 | 13 | 1 | 323 | 76 | 380 | 3.98e-29 | 115 |
| Msa0233540 | MtrunA17_Chr3g0128511 | 29.619 | 341 | 218 | 5 | 1 | 324 | 1 | 336 | 2.13e-27 | 109 |
| Msa0233540 | MtrunA17_Chr4g0045041 | 31.081 | 222 | 141 | 6 | 25 | 239 | 314 | 530 | 7.18e-21 | 93.2 |
| Msa0233540 | MtrunA17_Chr6g0453201 | 30.061 | 326 | 180 | 13 | 13 | 323 | 24 | 316 | 2.84e-20 | 89.7 |
| Msa0233540 | MtrunA17_Chr7g0228011 | 29.653 | 317 | 172 | 11 | 23 | 323 | 32 | 313 | 4.84e-20 | 89.0 |
| Msa0233540 | MtrunA17_Chr4g0015051 | 26.625 | 323 | 208 | 9 | 15 | 323 | 21 | 328 | 5.51e-20 | 89.0 |
| Msa0233540 | MtrunA17_Chr6g0465501 | 27.445 | 317 | 179 | 11 | 23 | 323 | 43 | 324 | 1.26e-19 | 87.8 |
| Msa0233540 | MtrunA17_Chr4g0015091 | 28.615 | 325 | 208 | 9 | 10 | 323 | 16 | 327 | 1.33e-19 | 87.8 |
| Msa0233540 | MtrunA17_Chr6g0466321 | 27.445 | 317 | 179 | 11 | 23 | 323 | 43 | 324 | 1.41e-19 | 87.8 |
| Msa0233540 | MtrunA17_Chr4g0045061 | 28.889 | 225 | 142 | 6 | 25 | 239 | 314 | 530 | 1.65e-19 | 89.4 |
| Msa0233540 | MtrunA17_Chr4g0014971 | 27.554 | 323 | 205 | 10 | 15 | 323 | 21 | 328 | 2.44e-19 | 87.0 |
| Msa0233540 | MtrunA17_Chr7g0235021 | 27.019 | 322 | 207 | 12 | 15 | 323 | 21 | 327 | 7.57e-19 | 85.9 |
| Msa0233540 | MtrunA17_Chr4g0014541 | 26.727 | 333 | 204 | 11 | 10 | 323 | 16 | 327 | 1.14e-18 | 85.1 |
| Msa0233540 | MtrunA17_Chr4g0014691 | 26.524 | 328 | 201 | 11 | 15 | 323 | 21 | 327 | 7.81e-18 | 82.8 |
| Msa0233540 | MtrunA17_Chr2g0316731 | 25.797 | 345 | 220 | 9 | 2 | 323 | 27 | 358 | 1.37e-17 | 82.4 |
| Msa0233540 | MtrunA17_Chr8g0351481 | 31.278 | 227 | 137 | 5 | 2 | 217 | 5 | 223 | 3.68e-17 | 80.9 |
| Msa0233540 | MtrunA17_Chr4g0014951 | 26.154 | 325 | 207 | 10 | 15 | 323 | 21 | 328 | 6.39e-17 | 80.1 |
| Msa0233540 | MtrunA17_Chr4g0014931 | 26.154 | 325 | 207 | 10 | 15 | 323 | 21 | 328 | 6.58e-17 | 80.1 |
| Msa0233540 | MtrunA17_Chr8g0351271 | 31.278 | 227 | 137 | 5 | 2 | 217 | 5 | 223 | 1.14e-16 | 79.7 |
| Msa0233540 | MtrunA17_Chr6g0453191 | 32.773 | 238 | 137 | 9 | 13 | 237 | 24 | 251 | 4.90e-16 | 77.4 |
| Msa0233540 | MtrunA17_Chr8g0385221 | 28.272 | 191 | 132 | 5 | 92 | 278 | 196 | 385 | 3.37e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233540 | AT4G21580.1 | 75.851 | 323 | 78 | 0 | 1 | 323 | 1 | 323 | 0.0 | 504 |
| Msa0233540 | AT4G21580.3 | 74.303 | 323 | 77 | 1 | 1 | 323 | 1 | 317 | 5.63e-175 | 488 |
| Msa0233540 | AT4G21580.2 | 73.793 | 290 | 76 | 0 | 34 | 323 | 1 | 290 | 1.36e-156 | 440 |
| Msa0233540 | AT5G61510.1 | 31.707 | 328 | 214 | 5 | 1 | 324 | 84 | 405 | 1.07e-37 | 139 |
| Msa0233540 | AT5G61510.2 | 31.429 | 315 | 206 | 5 | 14 | 324 | 40 | 348 | 2.94e-35 | 131 |
| Msa0233540 | AT1G23740.1 | 30.769 | 338 | 186 | 12 | 1 | 323 | 78 | 382 | 3.45e-30 | 118 |
| Msa0233540 | AT3G56460.1 | 27.964 | 329 | 218 | 9 | 7 | 323 | 15 | 336 | 4.93e-27 | 109 |
| Msa0233540 | AT1G49670.1 | 32.127 | 221 | 128 | 6 | 29 | 239 | 318 | 526 | 7.53e-21 | 93.6 |
| Msa0233540 | AT4G13010.1 | 27.812 | 320 | 207 | 8 | 15 | 323 | 21 | 327 | 3.05e-19 | 87.4 |
| Msa0233540 | AT1G49670.2 | 29.661 | 236 | 137 | 7 | 29 | 239 | 318 | 549 | 9.52e-19 | 87.4 |
| Msa0233540 | AT3G15090.1 | 26.062 | 353 | 209 | 11 | 2 | 323 | 33 | 364 | 8.74e-18 | 83.6 |
| Msa0233540 | AT5G63620.1 | 25.074 | 339 | 186 | 12 | 1 | 278 | 56 | 387 | 3.30e-13 | 70.5 |
| Msa0233540 | AT5G63620.2 | 24.779 | 339 | 187 | 12 | 1 | 278 | 56 | 387 | 5.62e-13 | 69.7 |
Find 103 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTTTCCAAGTGGAAAAT+TGG | 0.220666 | 2_2:+5885285 | Msa0233540:CDS |
| TTAACTTCTTTCTTCTGATT+TGG | 0.259288 | 2_2:+5888509 | Msa0233540:three_prime_UTR |
| TCTTCTGATTTGGTTTATCT+TGG | 0.260357 | 2_2:+5888519 | Msa0233540:three_prime_UTR |
| TATGACAAGCCGGCTATCTA+AGG | 0.300012 | 2_2:+5886386 | Msa0233540:CDS |
| TTTATTAATTCTCAGATTCA+TGG | 0.307719 | 2_2:+5886619 | Msa0233540:intron |
| ACCTTACCTTCTGCAATTGC+AGG | 0.310584 | 2_2:-5888220 | None:intergenic |
| TACGCGACACAACACACTTT+TGG | 0.311331 | 2_2:+5888371 | Msa0233540:three_prime_UTR |
| TCTTGGAGTTGAAGAACTTC+AGG | 0.328052 | 2_2:-5885096 | None:intergenic |
| ACGTTTCCAAGTGGAAAATT+GGG | 0.345313 | 2_2:+5885286 | Msa0233540:CDS |
| TGATGTTATTCTTGATTGTA+TGG | 0.350274 | 2_2:+5887109 | Msa0233540:CDS |
| TACACAATTAATAACACATT+TGG | 0.360473 | 2_2:-5888466 | None:intergenic |
| TATCCAGGACTTGAATGTTC+TGG | 0.367607 | 2_2:+5885240 | Msa0233540:CDS |
| GAAGGGTATCAGCTCTGTTA+AGG | 0.372125 | 2_2:-5885176 | None:intergenic |
| ACATGCAACCTCAGGAAAAC+TGG | 0.374246 | 2_2:-5886343 | None:intergenic |
| TGCGGAGGCTCACCGGCTTA+TGG | 0.376154 | 2_2:+5888282 | Msa0233540:CDS |
| TGCTGAGGGACAAGTTCTTC+CGG | 0.378801 | 2_2:+5886290 | Msa0233540:CDS |
| CTTCATCGTCTTTGATTTGA+GGG | 0.391499 | 2_2:-5885128 | None:intergenic |
| TTTGAGGGTCTTCAACCTCT+TGG | 0.395986 | 2_2:-5885113 | None:intergenic |
| CCTACCTCAGTGTTGAATAA+AGG | 0.402339 | 2_2:+5888425 | Msa0233540:three_prime_UTR |
| ACTTCATCGTCTTTGATTTG+AGG | 0.409397 | 2_2:-5885129 | None:intergenic |
| AGAGAAATCCCGGGTGGAAC+CGG | 0.415538 | 2_2:-5886309 | None:intergenic |
| AGCAAGATTTCTTTGATAGT+AGG | 0.419299 | 2_2:-5887138 | None:intergenic |
| CAGGTATGTGCTCTTCTAGC+TGG | 0.420815 | 2_2:+5886240 | Msa0233540:intron |
| CAAGTGGAAAATTGGGGATC+AGG | 0.422179 | 2_2:+5885293 | Msa0233540:CDS |
| CTTTCACTACTTGAATGCTT+TGG | 0.431568 | 2_2:+5888554 | Msa0233540:three_prime_UTR |
| ATTAATTGTGTACTGGTGGT+AGG | 0.443152 | 2_2:+5888477 | Msa0233540:three_prime_UTR |
| TTAATTGTGTACTGGTGGTA+GGG | 0.449360 | 2_2:+5888478 | Msa0233540:three_prime_UTR |
| GCCTGCAATTGCAGAAGGTA+AGG | 0.466263 | 2_2:+5888219 | Msa0233540:CDS |
| CTGAAGTGGAGAAGAATGTT+TGG | 0.467969 | 2_2:+5888197 | Msa0233540:CDS |
| TGCATCCTTCAGAGAAATCC+CGG | 0.470204 | 2_2:-5886319 | None:intergenic |
| ATGGAAAGCAGTCAGCATAT+TGG | 0.471076 | 2_2:+5888301 | Msa0233540:CDS |
| AAGGGTATCAGCTCTGTTAA+GGG | 0.477227 | 2_2:-5885175 | None:intergenic |
| CTGAAGCTGCGGAGGCTCAC+CGG | 0.480756 | 2_2:+5888275 | Msa0233540:CDS |
| AGGTTTCTCCCTTAGATAGC+CGG | 0.480837 | 2_2:-5886395 | None:intergenic |
| CAAGTTCTTCCGGTTCCACC+CGG | 0.482083 | 2_2:+5886300 | Msa0233540:CDS |
| CATGGAGGTTCAAGTGGAAT+CGG | 0.482880 | 2_2:+5886637 | Msa0233540:CDS |
| ATCAGCTCTGTTAAGGGCAG+TGG | 0.483074 | 2_2:-5885169 | None:intergenic |
| AGCCTCCGCAGCTTCAGAAA+GGG | 0.487747 | 2_2:-5888269 | None:intergenic |
| TCAAGAGTATTTGTTACTGC+AGG | 0.488629 | 2_2:+5886694 | Msa0233540:CDS |
| GCAAGGGTAAAGGAAGAAAC+TGG | 0.488723 | 2_2:+5886935 | Msa0233540:CDS |
| GATAGGGGCTAGCACCTTGA+GGG | 0.489307 | 2_2:-5885221 | None:intergenic |
| GGATAGGGGCTAGCACCTTG+AGG | 0.495024 | 2_2:-5885222 | None:intergenic |
| GAGCCTCCGCAGCTTCAGAA+AGG | 0.504076 | 2_2:-5888270 | None:intergenic |
| GAACATTCAAGTCCTGGATA+GGG | 0.505561 | 2_2:-5885237 | None:intergenic |
| AGAACATTCAAGTCCTGGAT+AGG | 0.510975 | 2_2:-5885238 | None:intergenic |
| ATTCCAGAACATTCAAGTCC+TGG | 0.512015 | 2_2:-5885243 | None:intergenic |
| TAACAAATACTCTTGATCCT+AGG | 0.513854 | 2_2:-5886687 | None:intergenic |
| ATCTAAGGGAGAAACCTTGT+TGG | 0.517870 | 2_2:+5886401 | Msa0233540:CDS |
| TCCACCCGGGATTTCTCTGA+AGG | 0.519437 | 2_2:+5886314 | Msa0233540:CDS |
| GGACTTTGTAGCAAGGGTAA+AGG | 0.520598 | 2_2:+5886925 | Msa0233540:CDS |
| GGGAAAGATTTGTAGACCAC+AGG | 0.522474 | 2_2:-5888247 | None:intergenic |
| TGTGCTCTTCTAGCTGGAGG+TGG | 0.523769 | 2_2:+5886246 | Msa0233540:CDS |
| ATGTGTTATTAATTGTGTAC+TGG | 0.525150 | 2_2:+5888470 | Msa0233540:three_prime_UTR |
| CAAGGTGCTAGCCCCTATCC+AGG | 0.525316 | 2_2:+5885225 | Msa0233540:CDS |
| GGCAAGCGTCTCACTGTACA+AGG | 0.526294 | 2_2:+5887242 | Msa0233540:CDS |
| TGAGTGAGAGTAAATGAAAG+TGG | 0.527983 | 2_2:+5888585 | Msa0233540:three_prime_UTR |
| CAGATTCATGGAGGTTCAAG+TGG | 0.533168 | 2_2:+5886631 | Msa0233540:intron |
| GATGTTATTCTTGATTGTAT+GGG | 0.533185 | 2_2:+5887110 | Msa0233540:CDS |
| TAGGGGCTAGCACCTTGAGG+GGG | 0.534054 | 2_2:-5885219 | None:intergenic |
| CCTTTATTCAACACTGAGGT+AGG | 0.540667 | 2_2:-5888425 | None:intergenic |
| TTAGTGTGAGAGAGAAGAGA+AGG | 0.542193 | 2_2:+5885011 | None:intergenic |
| TAATTGTGTACTGGTGGTAG+GGG | 0.543067 | 2_2:+5888479 | Msa0233540:three_prime_UTR |
| AGAGAAGAGAAGGAAAGTTG+TGG | 0.543155 | 2_2:+5885021 | Msa0233540:five_prime_UTR |
| TCTGGAATCATTGAATCCGT+TGG | 0.550779 | 2_2:+5885258 | Msa0233540:CDS |
| GCTGACTGCTTTCCATAAGC+CGG | 0.555663 | 2_2:-5888294 | None:intergenic |
| AACAGAGGACTTTGTAGCAA+GGG | 0.557510 | 2_2:+5886919 | Msa0233540:CDS |
| ATGACAAGCCGGCTATCTAA+GGG | 0.558435 | 2_2:+5886387 | Msa0233540:CDS |
| AAGGAAGAAACTGGCGGACA+AGG | 0.566694 | 2_2:+5886944 | Msa0233540:CDS |
| TGAAGAACTTCAGGTTCACC+TGG | 0.571691 | 2_2:-5885087 | None:intergenic |
| CACACAGTACATGCAACCTC+AGG | 0.575176 | 2_2:-5886351 | None:intergenic |
| AGCTGTGATCGTTGCTGAAG+TGG | 0.584468 | 2_2:+5888183 | Msa0233540:CDS |
| GTATGTGCTCTTCTAGCTGG+AGG | 0.586099 | 2_2:+5886243 | Msa0233540:CDS |
| GATAAGCGCCTTTCCTCTGA+AGG | 0.586526 | 2_2:-5885194 | None:intergenic |
| GTTTGGCCTGCAATTGCAGA+AGG | 0.586800 | 2_2:+5888214 | Msa0233540:CDS |
| AACATTCAAGTCCTGGATAG+GGG | 0.587904 | 2_2:-5885236 | None:intergenic |
| CGTTTCCAAGTGGAAAATTG+GGG | 0.591119 | 2_2:+5885287 | Msa0233540:CDS |
| CTCAGTGTTGAATAAAGGTG+TGG | 0.599377 | 2_2:+5888430 | Msa0233540:three_prime_UTR |
| AAGAGTATTGGAGCTGATGT+TGG | 0.603468 | 2_2:+5886884 | Msa0233540:CDS |
| TGAAGTTCTTCAACTCCAAG+AGG | 0.603773 | 2_2:+5885098 | Msa0233540:CDS |
| GCCTCCGCAGCTTCAGAAAG+GGG | 0.606587 | 2_2:-5888268 | None:intergenic |
| TATTGGAAAGATATTGCTTG+TGG | 0.612988 | 2_2:+5888318 | Msa0233540:CDS |
| GCTGATACCCTTCAGAGGAA+AGG | 0.613277 | 2_2:+5885186 | Msa0233540:CDS |
| ATTCAGATAGCTAAGTACCT+AGG | 0.626422 | 2_2:+5886670 | Msa0233540:CDS |
| AAGTTCTTCCGGTTCCACCC+GGG | 0.628530 | 2_2:+5886301 | Msa0233540:CDS |
| AAACAGAGGACTTTGTAGCA+AGG | 0.639577 | 2_2:+5886918 | Msa0233540:CDS |
| TTTATTATCGGCTTTCAAGG+GGG | 0.643203 | 2_2:+5887185 | Msa0233540:CDS |
| GCATCCTTCAGAGAAATCCC+GGG | 0.644578 | 2_2:-5886318 | None:intergenic |
| TGTTATTAATTGTGTACTGG+TGG | 0.647927 | 2_2:+5888473 | Msa0233540:three_prime_UTR |
| CCTCCGCAGCTTCAGAAAGG+GGG | 0.648637 | 2_2:-5888267 | None:intergenic |
| ATAGGGGCTAGCACCTTGAG+GGG | 0.651548 | 2_2:-5885220 | None:intergenic |
| ACAGAGCTGATACCCTTCAG+AGG | 0.655552 | 2_2:+5885181 | Msa0233540:CDS |
| ATTAATTCTCAGATTCATGG+AGG | 0.663589 | 2_2:+5886622 | Msa0233540:intron |
| ATAAGCGCCTTTCCTCTGAA+GGG | 0.666916 | 2_2:-5885193 | None:intergenic |
| AGAAGGTAAGGTTAAGCCTG+TGG | 0.670093 | 2_2:+5888231 | Msa0233540:CDS |
| CAGTGGCGTGAACTTTGATG+AGG | 0.672273 | 2_2:-5885152 | None:intergenic |
| GCAATTGTAATAACAACACC+AGG | 0.678910 | 2_2:+5885069 | Msa0233540:CDS |
| CTGAGGTTGCATGTACTGTG+TGG | 0.679898 | 2_2:+5886352 | Msa0233540:CDS |
| AATCATACGACTTACCAACA+AGG | 0.697741 | 2_2:-5886415 | None:intergenic |
| TCCTTCAGAGAAATCCCGGG+TGG | 0.700414 | 2_2:-5886315 | None:intergenic |
| GAGGTAGGTCAAAACACACA+AGG | 0.712850 | 2_2:-5888410 | None:intergenic |
| TGGTATCAATTACAAAACAG+AGG | 0.714141 | 2_2:+5886904 | Msa0233540:CDS |
| CACACCTTTATTCAACACTG+AGG | 0.727501 | 2_2:-5888429 | None:intergenic |
| AGGGTAAAGGAAGAAACTGG+CGG | 0.742355 | 2_2:+5886938 | Msa0233540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAACGATTTA+TGG | - | chr2_2:5885335-5885354 | None:intergenic | 10.0% |
| !! | TTCAAAAATAATGAAATTAA+TGG | - | chr2_2:5885389-5885408 | None:intergenic | 10.0% |
| !!! | TTTTTAGTTATATAATATCT+AGG | + | chr2_2:5885464-5885483 | Msa0233540:intron | 10.0% |
| !!! | TAATTACTAATTTTTAAGAA+AGG | - | chr2_2:5887880-5887899 | None:intergenic | 10.0% |
| !!! | TAATTTCATTATTTTTGAAG+TGG | + | chr2_2:5885390-5885409 | Msa0233540:intron | 15.0% |
| !!! | AATTTCATTATTTTTGAAGT+GGG | + | chr2_2:5885391-5885410 | Msa0233540:intron | 15.0% |
| !!! | TTATTTTGAAAATTGAATTG+TGG | + | chr2_2:5885420-5885439 | Msa0233540:intron | 15.0% |
| !!! | TATTTTGAAAATTGAATTGT+GGG | + | chr2_2:5885421-5885440 | Msa0233540:intron | 15.0% |
| !! | AAATCAATAATTCAAATCAA+AGG | - | chr2_2:5885505-5885524 | None:intergenic | 15.0% |
| !! | CTTAATTATTAGTAAACAAT+AGG | + | chr2_2:5885527-5885546 | Msa0233540:intron | 15.0% |
| !!! | TTAAAAATAAGTTTTGTATG+AGG | + | chr2_2:5888017-5888036 | Msa0233540:intron | 15.0% |
| !! | TTTATTAATTCTCAGATTCA+TGG | + | chr2_2:5886619-5886638 | Msa0233540:intron | 20.0% |
| !!! | TTGTATGTTTGTTTTCTAAT+TGG | + | chr2_2:5887036-5887055 | Msa0233540:intron | 20.0% |
| !! | AGTTTATGAAATTTCACTTA+AGG | + | chr2_2:5887448-5887467 | Msa0233540:intron | 20.0% |
| !! | ATATGTATACTCTTAAGAAT+TGG | - | chr2_2:5887811-5887830 | None:intergenic | 20.0% |
| !! | GTTGAATATTAAAGAATGAT+AGG | - | chr2_2:5888113-5888132 | None:intergenic | 20.0% |
| !! | ATTCTTTAATATTCAACTGT+GGG | + | chr2_2:5888116-5888135 | Msa0233540:intron | 20.0% |
| !! | TACACAATTAATAACACATT+TGG | - | chr2_2:5888469-5888488 | None:intergenic | 20.0% |
| ! | AATCAAAGCAACAAAAATGA+AGG | + | chr2_2:5885047-5885066 | Msa0233540:exon | 25.0% |
| !!! | TGGATTTTAACTTCGAATTA+TGG | - | chr2_2:5885369-5885388 | None:intergenic | 25.0% |
| ! | TCAGATAAGTTAATACAAAC+AGG | + | chr2_2:5885827-5885846 | Msa0233540:intron | 25.0% |
| ! | TCGTATACATTTATAATCAC+TGG | - | chr2_2:5885872-5885891 | None:intergenic | 25.0% |
| ! | TGAATGGATATTATGATATG+AGG | + | chr2_2:5886205-5886224 | Msa0233540:intron | 25.0% |
| !!! | TCCTGGGTTATTTTATTATT+TGG | + | chr2_2:5886556-5886575 | Msa0233540:intron | 25.0% |
| ! | ACCAAATAATAAAATAACCC+AGG | - | chr2_2:5886560-5886579 | None:intergenic | 25.0% |
| ! | AAGTTAATACGTCAACTATT+AGG | - | chr2_2:5886601-5886620 | None:intergenic | 25.0% |
| ! | TATTCTAGATATTGCTAAAC+AGG | + | chr2_2:5886836-5886855 | Msa0233540:intron | 25.0% |
| ! | AATTCACATCATGTTCATAT+AGG | - | chr2_2:5886975-5886994 | None:intergenic | 25.0% |
| ! | CTATAGATCATATAATGTTG+CGG | - | chr2_2:5887007-5887026 | None:intergenic | 25.0% |
| ! | TAGAAAACAAACATACAAAG+CGG | - | chr2_2:5887034-5887053 | None:intergenic | 25.0% |
| ! | TGATGTTATTCTTGATTGTA+TGG | + | chr2_2:5887109-5887128 | Msa0233540:CDS | 25.0% |
| ! | GATGTTATTCTTGATTGTAT+GGG | + | chr2_2:5887110-5887129 | Msa0233540:CDS | 25.0% |
| !!! | TTTTTATTATCGGCTTTCAA+GGG | + | chr2_2:5887183-5887202 | Msa0233540:CDS | 25.0% |
| ! | TATGAAATTTCACTTAAGGT+TGG | + | chr2_2:5887452-5887471 | Msa0233540:intron | 25.0% |
| ! | ATGAAATTTCACTTAAGGTT+GGG | + | chr2_2:5887453-5887472 | Msa0233540:intron | 25.0% |
| ! | GCAAAACAAAATTTGTAAGT+TGG | - | chr2_2:5887513-5887532 | None:intergenic | 25.0% |
| ! | ATCATGCAATGTATTGTTTA+TGG | + | chr2_2:5887616-5887635 | Msa0233540:intron | 25.0% |
| ! | TGTATTGTTTATGGCTATAT+AGG | + | chr2_2:5887625-5887644 | Msa0233540:intron | 25.0% |
| ! | GTATTGTTTATGGCTATATA+GGG | + | chr2_2:5887626-5887645 | Msa0233540:intron | 25.0% |
| !! | TTCTTTTATTAGTGTGGTTA+TGG | + | chr2_2:5888081-5888100 | Msa0233540:intron | 25.0% |
| ! | CATTCTTTAATATTCAACTG+TGG | + | chr2_2:5888115-5888134 | Msa0233540:intron | 25.0% |
| !! | ATGTGTTATTAATTGTGTAC+TGG | + | chr2_2:5888470-5888489 | Msa0233540:three_prime_UTR | 25.0% |
| ! | TTAACTTCTTTCTTCTGATT+TGG | + | chr2_2:5888509-5888528 | Msa0233540:three_prime_UTR | 25.0% |
| TTTGATAAGTTATCCTAGAG+AGG | + | chr2_2:5885699-5885718 | Msa0233540:intron | 30.0% | |
| CTACAAGCACTAAATTAAGT+TGG | - | chr2_2:5885910-5885929 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTATAAGCTATCT+TGG | + | chr2_2:5885998-5886017 | Msa0233540:intron | 30.0% |
| ATATTATGATATGAGGTGTG+TGG | + | chr2_2:5886212-5886231 | Msa0233540:intron | 30.0% | |
| !!! | CAACTATTTTTATGACAAGC+CGG | + | chr2_2:5886376-5886395 | Msa0233540:CDS | 30.0% |
| ! | TGTAATCAGTTCATCTTTTC+AGG | + | chr2_2:5886437-5886456 | Msa0233540:intron | 30.0% |
| ATTAATTCTCAGATTCATGG+AGG | + | chr2_2:5886622-5886641 | Msa0233540:intron | 30.0% | |
| TAACAAATACTCTTGATCCT+AGG | - | chr2_2:5886690-5886709 | None:intergenic | 30.0% | |
| CAGTTTCATGTCTAAACATA+CGG | - | chr2_2:5886761-5886780 | None:intergenic | 30.0% | |
| AATTTGAAGATACGAGAAAC+TGG | - | chr2_2:5886793-5886812 | None:intergenic | 30.0% | |
| TGGTATCAATTACAAAACAG+AGG | + | chr2_2:5886904-5886923 | Msa0233540:CDS | 30.0% | |
| ! | AGCAAGATTTCTTTGATAGT+AGG | - | chr2_2:5887141-5887160 | None:intergenic | 30.0% |
| !! | CTTGCTAGCTTAAATTTTGA+TGG | + | chr2_2:5887155-5887174 | Msa0233540:CDS | 30.0% |
| !! | CTAGCTTAAATTTTGATGGA+AGG | + | chr2_2:5887159-5887178 | Msa0233540:CDS | 30.0% |
| ! | GATGGAAGGCTTTTTATTAT+CGG | + | chr2_2:5887173-5887192 | Msa0233540:CDS | 30.0% |
| !!! | CTTTTTATTATCGGCTTTCA+AGG | + | chr2_2:5887182-5887201 | Msa0233540:CDS | 30.0% |
| !!! | TTTTATTATCGGCTTTCAAG+GGG | + | chr2_2:5887184-5887203 | Msa0233540:CDS | 30.0% |
| AGTGAGTATCTACTAGAAAA+GGG | - | chr2_2:5887289-5887308 | None:intergenic | 30.0% | |
| AAATTACTAATGTCAGTGAC+TGG | - | chr2_2:5887414-5887433 | None:intergenic | 30.0% | |
| ! | ATTTAGTTTCTTTGCATGTC+AGG | - | chr2_2:5887703-5887722 | None:intergenic | 30.0% |
| AGAAACTAAATTCTTGTGTC+AGG | + | chr2_2:5887712-5887731 | Msa0233540:intron | 30.0% | |
| ! | ACTTGTTAGTAATGTTAGTG+CGG | + | chr2_2:5887906-5887925 | Msa0233540:intron | 30.0% |
| !! | TCTGTAGACACATCATTTTT+AGG | + | chr2_2:5887970-5887989 | Msa0233540:intron | 30.0% |
| ! | TAGCTTTTCCACTATTGAAA+TGG | + | chr2_2:5888054-5888073 | Msa0233540:intron | 30.0% |
| ! | AGCTTTTCCACTATTGAAAT+GGG | + | chr2_2:5888055-5888074 | Msa0233540:intron | 30.0% |
| TATTGGAAAGATATTGCTTG+TGG | + | chr2_2:5888318-5888337 | Msa0233540:CDS | 30.0% | |
| TGTTATTAATTGTGTACTGG+TGG | + | chr2_2:5888473-5888492 | Msa0233540:three_prime_UTR | 30.0% | |
| !! | TCTTCTGATTTGGTTTATCT+TGG | + | chr2_2:5888519-5888538 | Msa0233540:three_prime_UTR | 30.0% |
| GCAATTGTAATAACAACACC+AGG | + | chr2_2:5885069-5885088 | Msa0233540:CDS | 35.0% | |
| !! | CTTCATCGTCTTTGATTTGA+GGG | - | chr2_2:5885131-5885150 | None:intergenic | 35.0% |
| !! | ACTTCATCGTCTTTGATTTG+AGG | - | chr2_2:5885132-5885151 | None:intergenic | 35.0% |
| AACGTTTCCAAGTGGAAAAT+TGG | + | chr2_2:5885285-5885304 | Msa0233540:CDS | 35.0% | |
| ACGTTTCCAAGTGGAAAATT+GGG | + | chr2_2:5885286-5885305 | Msa0233540:CDS | 35.0% | |
| GCATAACAATTAACCTCTCT+AGG | - | chr2_2:5885715-5885734 | None:intergenic | 35.0% | |
| TCTTCCAAACAGTCTCAATA+GGG | + | chr2_2:5885786-5885805 | Msa0233540:intron | 35.0% | |
| CTGGACAACAAACTTACATA+AGG | - | chr2_2:5885853-5885872 | None:intergenic | 35.0% | |
| CAAACACTTGTGGAACTATT+TGG | - | chr2_2:5886121-5886140 | None:intergenic | 35.0% | |
| CATGACAAACAGTCACATAA+CGG | - | chr2_2:5886179-5886198 | None:intergenic | 35.0% | |
| GTTTGTCATGTGCTTATGAA+TGG | + | chr2_2:5886189-5886208 | Msa0233540:intron | 35.0% | |
| AATCATACGACTTACCAACA+AGG | - | chr2_2:5886418-5886437 | None:intergenic | 35.0% | |
| !! | TAATCTGTTCTTTTCGAGCA+TGG | + | chr2_2:5886474-5886493 | Msa0233540:intron | 35.0% |
| !! | TTCTTTTCGAGCATGGTTAT+TGG | + | chr2_2:5886481-5886500 | Msa0233540:intron | 35.0% |
| !! | TCTTTTCGAGCATGGTTATT+GGG | + | chr2_2:5886482-5886501 | Msa0233540:intron | 35.0% |
| ATACAGTGAGATCAAAAGCA+GGG | - | chr2_2:5886528-5886547 | None:intergenic | 35.0% | |
| TATACAGTGAGATCAAAAGC+AGG | - | chr2_2:5886529-5886548 | None:intergenic | 35.0% | |
| ! | TCACTGTATAGTTTTCTTCC+TGG | + | chr2_2:5886539-5886558 | Msa0233540:intron | 35.0% |
| ! | CACTGTATAGTTTTCTTCCT+GGG | + | chr2_2:5886540-5886559 | Msa0233540:intron | 35.0% |
| ATTCAGATAGCTAAGTACCT+AGG | + | chr2_2:5886670-5886689 | Msa0233540:CDS | 35.0% | |
| !! | TCAAGAGTATTTGTTACTGC+AGG | + | chr2_2:5886694-5886713 | Msa0233540:CDS | 35.0% |
| CGTATGTTTAGACATGAAAC+TGG | + | chr2_2:5886759-5886778 | Msa0233540:intron | 35.0% | |
| ! | AATTTTCTGCAAACTTCGCT+TGG | - | chr2_2:5886816-5886835 | None:intergenic | 35.0% |
| !! | CTAGCTTTTTGCAAGAGTAT+TGG | + | chr2_2:5886872-5886891 | Msa0233540:CDS | 35.0% |
| ATATAATGTTGCGGAATGCT+TGG | - | chr2_2:5886998-5887017 | None:intergenic | 35.0% | |
| TAATGTTATCATTGACGTGG+TGG | + | chr2_2:5887079-5887098 | Msa0233540:intron | 35.0% | |
| !! | TTTATTATCGGCTTTCAAGG+GGG | + | chr2_2:5887185-5887204 | Msa0233540:CDS | 35.0% |
| !! | GTGGATCTACGTGTTTTATT+TGG | + | chr2_2:5887221-5887240 | Msa0233540:CDS | 35.0% |
| !!! | GTACAAGGTATTGCAGATTT+TGG | + | chr2_2:5887257-5887276 | Msa0233540:intron | 35.0% |
| GAGTGAGTATCTACTAGAAA+AGG | - | chr2_2:5887290-5887309 | None:intergenic | 35.0% | |
| CATGCAGAAAACTAAACTTG+AGG | - | chr2_2:5887315-5887334 | None:intergenic | 35.0% | |
| ! | GTCATGTTTTCACTTGTACA+GGG | - | chr2_2:5887347-5887366 | None:intergenic | 35.0% |
| ! | AGTCATGTTTTCACTTGTAC+AGG | - | chr2_2:5887348-5887367 | None:intergenic | 35.0% |
| AAATTTCACTTAAGGTTGGG+TGG | + | chr2_2:5887456-5887475 | Msa0233540:intron | 35.0% | |
| ATCTTTCTTGACCTTTGCAT+CGG | + | chr2_2:5887551-5887570 | Msa0233540:intron | 35.0% | |
| AGAAGAGATAAGGTGATTTG+CGG | - | chr2_2:5887953-5887972 | None:intergenic | 35.0% | |
| ATGTGTCTACAGAAGAGATA+AGG | - | chr2_2:5887963-5887982 | None:intergenic | 35.0% | |
| AGAACTTCCCATTTCAATAG+TGG | - | chr2_2:5888065-5888084 | None:intergenic | 35.0% | |
| ! | GGGAAGTTCTTTTATTAGTG+TGG | + | chr2_2:5888075-5888094 | Msa0233540:intron | 35.0% |
| !!! | ACGATCACAGCTTTATTTTC+AGG | - | chr2_2:5888175-5888194 | None:intergenic | 35.0% |
| ! | ATTAATTGTGTACTGGTGGT+AGG | + | chr2_2:5888477-5888496 | Msa0233540:three_prime_UTR | 35.0% |
| ! | TTAATTGTGTACTGGTGGTA+GGG | + | chr2_2:5888478-5888497 | Msa0233540:three_prime_UTR | 35.0% |
| CTTTCACTACTTGAATGCTT+TGG | + | chr2_2:5888554-5888573 | Msa0233540:three_prime_UTR | 35.0% | |
| TGAGTGAGAGTAAATGAAAG+TGG | + | chr2_2:5888585-5888604 | Msa0233540:three_prime_UTR | 35.0% | |
| AGAGAAGAGAAGGAAAGTTG+TGG | + | chr2_2:5885021-5885040 | Msa0233540:five_prime_UTR | 40.0% | |
| TCTTGGAGTTGAAGAACTTC+AGG | - | chr2_2:5885099-5885118 | None:intergenic | 40.0% | |
| TGAAGTTCTTCAACTCCAAG+AGG | + | chr2_2:5885098-5885117 | Msa0233540:CDS | 40.0% | |
| !! | AAGGGTATCAGCTCTGTTAA+GGG | - | chr2_2:5885178-5885197 | None:intergenic | 40.0% |
| AACATTCAAGTCCTGGATAG+GGG | - | chr2_2:5885239-5885258 | None:intergenic | 40.0% | |
| GAACATTCAAGTCCTGGATA+GGG | - | chr2_2:5885240-5885259 | None:intergenic | 40.0% | |
| AGAACATTCAAGTCCTGGAT+AGG | - | chr2_2:5885241-5885260 | None:intergenic | 40.0% | |
| TATCCAGGACTTGAATGTTC+TGG | + | chr2_2:5885240-5885259 | Msa0233540:CDS | 40.0% | |
| ATTCCAGAACATTCAAGTCC+TGG | - | chr2_2:5885246-5885265 | None:intergenic | 40.0% | |
| ! | TCTGGAATCATTGAATCCGT+TGG | + | chr2_2:5885258-5885277 | Msa0233540:CDS | 40.0% |
| ! | CTTGGAAACGTTTTTGCCAA+CGG | - | chr2_2:5885277-5885296 | None:intergenic | 40.0% |
| TTGGCAAAAACGTTTCCAAG+TGG | + | chr2_2:5885277-5885296 | Msa0233540:CDS | 40.0% | |
| CGTTTCCAAGTGGAAAATTG+GGG | + | chr2_2:5885287-5885306 | Msa0233540:CDS | 40.0% | |
| CTCTTCCAAACAGTCTCAAT+AGG | + | chr2_2:5885785-5885804 | Msa0233540:intron | 40.0% | |
| TCGATAAGCACTCATGTGAT+AGG | - | chr2_2:5885941-5885960 | None:intergenic | 40.0% | |
| AGTTCCACAAGTGTTTGTGT+TGG | + | chr2_2:5886124-5886143 | Msa0233540:intron | 40.0% | |
| GTTCCACAAGTGTTTGTGTT+GGG | + | chr2_2:5886125-5886144 | Msa0233540:intron | 40.0% | |
| TATCCCAACACAAACACTTG+TGG | - | chr2_2:5886131-5886150 | None:intergenic | 40.0% | |
| ! | TGAAAAAGTTGCTGTTGCTG+AGG | + | chr2_2:5886275-5886294 | Msa0233540:CDS | 40.0% |
| ! | GAAAAAGTTGCTGTTGCTGA+GGG | + | chr2_2:5886276-5886295 | Msa0233540:CDS | 40.0% |
| ATCTAAGGGAGAAACCTTGT+TGG | + | chr2_2:5886401-5886420 | Msa0233540:CDS | 40.0% | |
| !! | AAGAGTATTGGAGCTGATGT+TGG | + | chr2_2:5886884-5886903 | Msa0233540:CDS | 40.0% |
| AAACAGAGGACTTTGTAGCA+AGG | + | chr2_2:5886918-5886937 | Msa0233540:CDS | 40.0% | |
| AACAGAGGACTTTGTAGCAA+GGG | + | chr2_2:5886919-5886938 | Msa0233540:CDS | 40.0% | |
| TTGGTTGCTTAGAGATGCAT+CGG | + | chr2_2:5887055-5887074 | Msa0233540:intron | 40.0% | |
| GGGTAATGTTATCATTGACG+TGG | + | chr2_2:5887076-5887095 | Msa0233540:intron | 40.0% | |
| GCAGAAAACTAAACTTGAGG+AGG | - | chr2_2:5887312-5887331 | None:intergenic | 40.0% | |
| ATGATAGCACACTCCAGTAA+CGG | - | chr2_2:5887740-5887759 | None:intergenic | 40.0% | |
| ACACTAACCACTGAGTAAAG+TGG | + | chr2_2:5887770-5887789 | Msa0233540:intron | 40.0% | |
| CACTAACCACTGAGTAAAGT+GGG | + | chr2_2:5887771-5887790 | Msa0233540:intron | 40.0% | |
| ! | GTGATTTGCGGATGATATGT+GGG | - | chr2_2:5887941-5887960 | None:intergenic | 40.0% |
| CTGAAGTGGAGAAGAATGTT+TGG | + | chr2_2:5888197-5888216 | Msa0233540:CDS | 40.0% | |
| ATGGAAAGCAGTCAGCATAT+TGG | + | chr2_2:5888301-5888320 | Msa0233540:CDS | 40.0% | |
| CCTTTATTCAACACTGAGGT+AGG | - | chr2_2:5888428-5888447 | None:intergenic | 40.0% | |
| ! | CCTACCTCAGTGTTGAATAA+AGG | + | chr2_2:5888425-5888444 | Msa0233540:three_prime_UTR | 40.0% |
| CACACCTTTATTCAACACTG+AGG | - | chr2_2:5888432-5888451 | None:intergenic | 40.0% | |
| ! | CTCAGTGTTGAATAAAGGTG+TGG | + | chr2_2:5888430-5888449 | Msa0233540:three_prime_UTR | 40.0% |
| ! | TAATTGTGTACTGGTGGTAG+GGG | + | chr2_2:5888479-5888498 | Msa0233540:three_prime_UTR | 40.0% |
| ! | TGAAGAACTTCAGGTTCACC+TGG | - | chr2_2:5885090-5885109 | None:intergenic | 45.0% |
| TTTGAGGGTCTTCAACCTCT+TGG | - | chr2_2:5885116-5885135 | None:intergenic | 45.0% | |
| !! | GAAGGGTATCAGCTCTGTTA+AGG | - | chr2_2:5885179-5885198 | None:intergenic | 45.0% |
| ATAAGCGCCTTTCCTCTGAA+GGG | - | chr2_2:5885196-5885215 | None:intergenic | 45.0% | |
| ! | CTGATCCCCAATTTTCCACT+TGG | - | chr2_2:5885295-5885314 | None:intergenic | 45.0% |
| CAAGTGGAAAATTGGGGATC+AGG | + | chr2_2:5885293-5885312 | Msa0233540:CDS | 45.0% | |
| TCCAAACAGTCTCAATAGGG+TGG | + | chr2_2:5885789-5885808 | Msa0233540:intron | 45.0% | |
| ACCACCCTATTGAGACTGTT+TGG | - | chr2_2:5885793-5885812 | None:intergenic | 45.0% | |
| AAGCTATCTTGGAGAGCTTC+TGG | + | chr2_2:5886009-5886028 | Msa0233540:intron | 45.0% | |
| ACAGTCACATAACGGCTGTT+TGG | - | chr2_2:5886171-5886190 | None:intergenic | 45.0% | |
| TGCATCCTTCAGAGAAATCC+CGG | - | chr2_2:5886322-5886341 | None:intergenic | 45.0% | |
| ACATGCAACCTCAGGAAAAC+TGG | - | chr2_2:5886346-5886365 | None:intergenic | 45.0% | |
| TATGACAAGCCGGCTATCTA+AGG | + | chr2_2:5886386-5886405 | Msa0233540:CDS | 45.0% | |
| ATGACAAGCCGGCTATCTAA+GGG | + | chr2_2:5886387-5886406 | Msa0233540:CDS | 45.0% | |
| AGGTTTCTCCCTTAGATAGC+CGG | - | chr2_2:5886398-5886417 | None:intergenic | 45.0% | |
| CAGATTCATGGAGGTTCAAG+TGG | + | chr2_2:5886631-5886650 | Msa0233540:intron | 45.0% | |
| CATGGAGGTTCAAGTGGAAT+CGG | + | chr2_2:5886637-5886656 | Msa0233540:CDS | 45.0% | |
| GGACTTTGTAGCAAGGGTAA+AGG | + | chr2_2:5886925-5886944 | Msa0233540:CDS | 45.0% | |
| GCAAGGGTAAAGGAAGAAAC+TGG | + | chr2_2:5886935-5886954 | Msa0233540:CDS | 45.0% | |
| AGGGTAAAGGAAGAAACTGG+CGG | + | chr2_2:5886938-5886957 | Msa0233540:CDS | 45.0% | |
| TGGTTGCTTAGAGATGCATC+GGG | + | chr2_2:5887056-5887075 | Msa0233540:intron | 45.0% | |
| ! | CTGCTGGACTGGACAAAAAT+GGG | - | chr2_2:5887664-5887683 | None:intergenic | 45.0% |
| ! | TCTGCTGGACTGGACAAAAA+TGG | - | chr2_2:5887665-5887684 | None:intergenic | 45.0% |
| CAATGTTGCGAAATGTCTGC+TGG | - | chr2_2:5887680-5887699 | None:intergenic | 45.0% | |
| TGATAGCACACTCCAGTAAC+GGG | - | chr2_2:5887739-5887758 | None:intergenic | 45.0% | |
| AAGTGACCCACTTTACTCAG+TGG | - | chr2_2:5887780-5887799 | None:intergenic | 45.0% | |
| CGTGTCTACTGTCTACTCTT+TGG | - | chr2_2:5887856-5887875 | None:intergenic | 45.0% | |
| ! | GGTGATTTGCGGATGATATG+TGG | - | chr2_2:5887942-5887961 | None:intergenic | 45.0% |
| ! | CAACTGTGGGTTATGTTCAG+CGG | + | chr2_2:5888129-5888148 | Msa0233540:intron | 45.0% |
| ACCTTACCTTCTGCAATTGC+AGG | - | chr2_2:5888223-5888242 | None:intergenic | 45.0% | |
| AGAAGGTAAGGTTAAGCCTG+TGG | + | chr2_2:5888231-5888250 | Msa0233540:CDS | 45.0% | |
| GGGAAAGATTTGTAGACCAC+AGG | - | chr2_2:5888250-5888269 | None:intergenic | 45.0% | |
| ! | TACGCGACACAACACACTTT+TGG | + | chr2_2:5888371-5888390 | Msa0233540:three_prime_UTR | 45.0% |
| GAGGTAGGTCAAAACACACA+AGG | - | chr2_2:5888413-5888432 | None:intergenic | 45.0% | |
| CAGTGGCGTGAACTTTGATG+AGG | - | chr2_2:5885155-5885174 | None:intergenic | 50.0% | |
| ATCAGCTCTGTTAAGGGCAG+TGG | - | chr2_2:5885172-5885191 | None:intergenic | 50.0% | |
| ACAGAGCTGATACCCTTCAG+AGG | + | chr2_2:5885181-5885200 | Msa0233540:CDS | 50.0% | |
| GCTGATACCCTTCAGAGGAA+AGG | + | chr2_2:5885186-5885205 | Msa0233540:CDS | 50.0% | |
| GATAAGCGCCTTTCCTCTGA+AGG | - | chr2_2:5885197-5885216 | None:intergenic | 50.0% | |
| TATGAGGTGTGTGGCTTCAC+AGG | + | chr2_2:5886221-5886240 | Msa0233540:intron | 50.0% | |
| CAGGTATGTGCTCTTCTAGC+TGG | + | chr2_2:5886240-5886259 | Msa0233540:intron | 50.0% | |
| ! | GTATGTGCTCTTCTAGCTGG+AGG | + | chr2_2:5886243-5886262 | Msa0233540:CDS | 50.0% |
| TGCTGAGGGACAAGTTCTTC+CGG | + | chr2_2:5886290-5886309 | Msa0233540:CDS | 50.0% | |
| GCATCCTTCAGAGAAATCCC+GGG | - | chr2_2:5886321-5886340 | None:intergenic | 50.0% | |
| CACACAGTACATGCAACCTC+AGG | - | chr2_2:5886354-5886373 | None:intergenic | 50.0% | |
| CTGAGGTTGCATGTACTGTG+TGG | + | chr2_2:5886352-5886371 | Msa0233540:CDS | 50.0% | |
| ! | AAGGAAGAAACTGGCGGACA+AGG | + | chr2_2:5886944-5886963 | Msa0233540:CDS | 50.0% |
| GTTATCATTGACGTGGTGGC+AGG | + | chr2_2:5887083-5887102 | Msa0233540:intron | 50.0% | |
| !! | TCAAGGGGGTGTTTCTACAG+AGG | + | chr2_2:5887199-5887218 | Msa0233540:CDS | 50.0% |
| !! | CAGAAGAAGCACCGATGCAA+AGG | - | chr2_2:5887565-5887584 | None:intergenic | 50.0% |
| ! | CTTTGCATCGGTGCTTCTTC+TGG | + | chr2_2:5887563-5887582 | Msa0233540:intron | 50.0% |
| TTGCGAAATGTCTGCTGGAC+TGG | - | chr2_2:5887675-5887694 | None:intergenic | 50.0% | |
| GATAGCACACTCCAGTAACG+GGG | - | chr2_2:5887738-5887757 | None:intergenic | 50.0% | |
| AGCTGTGATCGTTGCTGAAG+TGG | + | chr2_2:5888183-5888202 | Msa0233540:CDS | 50.0% | |
| GTTTGGCCTGCAATTGCAGA+AGG | + | chr2_2:5888214-5888233 | Msa0233540:CDS | 50.0% | |
| GCCTGCAATTGCAGAAGGTA+AGG | + | chr2_2:5888219-5888238 | Msa0233540:CDS | 50.0% | |
| !! | TTTCCCCCTTTCTGAAGCTG+CGG | + | chr2_2:5888264-5888283 | Msa0233540:CDS | 50.0% |
| GCTGACTGCTTTCCATAAGC+CGG | - | chr2_2:5888297-5888316 | None:intergenic | 50.0% | |
| ! | ATAGGGGCTAGCACCTTGAG+GGG | - | chr2_2:5885223-5885242 | None:intergenic | 55.0% |
| ! | GATAGGGGCTAGCACCTTGA+GGG | - | chr2_2:5885224-5885243 | None:intergenic | 55.0% |
| ! | TGTGCTCTTCTAGCTGGAGG+TGG | + | chr2_2:5886246-5886265 | Msa0233540:CDS | 55.0% |
| CAAGTTCTTCCGGTTCCACC+CGG | + | chr2_2:5886300-5886319 | Msa0233540:CDS | 55.0% | |
| AAGTTCTTCCGGTTCCACCC+GGG | + | chr2_2:5886301-5886320 | Msa0233540:CDS | 55.0% | |
| AGAGAAATCCCGGGTGGAAC+CGG | - | chr2_2:5886312-5886331 | None:intergenic | 55.0% | |
| TCCACCCGGGATTTCTCTGA+AGG | + | chr2_2:5886314-5886333 | Msa0233540:CDS | 55.0% | |
| TCCTTCAGAGAAATCCCGGG+TGG | - | chr2_2:5886318-5886337 | None:intergenic | 55.0% | |
| ! | GGATGCAGCCAGTTTTCCTG+AGG | + | chr2_2:5886335-5886354 | Msa0233540:CDS | 55.0% |
| !! | AGGGGGTGTTTCTACAGAGG+TGG | + | chr2_2:5887202-5887221 | Msa0233540:CDS | 55.0% |
| GGCAAGCGTCTCACTGTACA+AGG | + | chr2_2:5887242-5887261 | Msa0233540:CDS | 55.0% | |
| ! | TGTGGGTTATGTTCAGCGGC+TGG | + | chr2_2:5888133-5888152 | Msa0233540:intron | 55.0% |
| AGCCTCCGCAGCTTCAGAAA+GGG | - | chr2_2:5888272-5888291 | None:intergenic | 55.0% | |
| ! | TAGGGGCTAGCACCTTGAGG+GGG | - | chr2_2:5885222-5885241 | None:intergenic | 60.0% |
| ! | GGATAGGGGCTAGCACCTTG+AGG | - | chr2_2:5885225-5885244 | None:intergenic | 60.0% |
| ! | CAAGGTGCTAGCCCCTATCC+AGG | + | chr2_2:5885225-5885244 | Msa0233540:CDS | 60.0% |
| CTTGTGTCAGGCCCCGTTAC+TGG | + | chr2_2:5887724-5887743 | Msa0233540:intron | 60.0% | |
| CCTCCGCAGCTTCAGAAAGG+GGG | - | chr2_2:5888270-5888289 | None:intergenic | 60.0% | |
| GCCTCCGCAGCTTCAGAAAG+GGG | - | chr2_2:5888271-5888290 | None:intergenic | 60.0% | |
| GAGCCTCCGCAGCTTCAGAA+AGG | - | chr2_2:5888273-5888292 | None:intergenic | 60.0% | |
| GGCGCTTATCCTCCCCCTCA+AGG | + | chr2_2:5885207-5885226 | Msa0233540:CDS | 65.0% | |
| !! | CCCCCTTTCTGAAGCTGCGG+AGG | + | chr2_2:5888267-5888286 | Msa0233540:CDS | 65.0% |
| CTGAAGCTGCGGAGGCTCAC+CGG | + | chr2_2:5888275-5888294 | Msa0233540:CDS | 65.0% | |
| !! | TGCGGAGGCTCACCGGCTTA+TGG | + | chr2_2:5888282-5888301 | Msa0233540:CDS | 65.0% |
| ! | GGGCTAGCACCTTGAGGGGG+AGG | - | chr2_2:5885219-5885238 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5885016 | 5888623 | 5885016 | ID=Msa0233540;Name=Msa0233540 |
| chr2_2 | mRNA | 5885016 | 5888623 | 5885016 | ID=Msa0233540-mRNA-1;Parent=Msa0233540;Name=Msa0233540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=47|1|1|1|1|1|6|278|325 |
| chr2_2 | exon | 5885016 | 5885314 | 5885016 | ID=Msa0233540-mRNA-1:exon:2545;Parent=Msa0233540-mRNA-1 |
| chr2_2 | exon | 5886243 | 5886422 | 5886243 | ID=Msa0233540-mRNA-1:exon:2546;Parent=Msa0233540-mRNA-1 |
| chr2_2 | exon | 5886634 | 5886715 | 5886634 | ID=Msa0233540-mRNA-1:exon:2547;Parent=Msa0233540-mRNA-1 |
| chr2_2 | exon | 5886858 | 5886965 | 5886858 | ID=Msa0233540-mRNA-1:exon:2548;Parent=Msa0233540-mRNA-1 |
| chr2_2 | exon | 5887105 | 5887263 | 5887105 | ID=Msa0233540-mRNA-1:exon:2549;Parent=Msa0233540-mRNA-1 |
| chr2_2 | exon | 5888149 | 5888623 | 5888149 | ID=Msa0233540-mRNA-1:exon:2550;Parent=Msa0233540-mRNA-1 |
| chr2_2 | five_prime_UTR | 5885016 | 5885062 | 5885016 | ID=Msa0233540-mRNA-1:five_prime_utr;Parent=Msa0233540-mRNA-1 |
| chr2_2 | CDS | 5885063 | 5885314 | 5885063 | ID=Msa0233540-mRNA-1:cds;Parent=Msa0233540-mRNA-1 |
| chr2_2 | CDS | 5886243 | 5886422 | 5886243 | ID=Msa0233540-mRNA-1:cds;Parent=Msa0233540-mRNA-1 |
| chr2_2 | CDS | 5886634 | 5886715 | 5886634 | ID=Msa0233540-mRNA-1:cds;Parent=Msa0233540-mRNA-1 |
| chr2_2 | CDS | 5886858 | 5886965 | 5886858 | ID=Msa0233540-mRNA-1:cds;Parent=Msa0233540-mRNA-1 |
| chr2_2 | CDS | 5887105 | 5887263 | 5887105 | ID=Msa0233540-mRNA-1:cds;Parent=Msa0233540-mRNA-1 |
| chr2_2 | CDS | 5888149 | 5888345 | 5888149 | ID=Msa0233540-mRNA-1:cds;Parent=Msa0233540-mRNA-1 |
| chr2_2 | three_prime_UTR | 5888346 | 5888623 | 5888346 | ID=Msa0233540-mRNA-1:three_prime_utr;Parent=Msa0233540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
