Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233530 | XP_003606006.2 | 91.066 | 347 | 9 | 1 | 1 | 347 | 1 | 325 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233530 | sp|Q53FA7|QORX_HUMAN | 39.143 | 350 | 186 | 6 | 1 | 345 | 1 | 328 | 3.52e-74 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233530 | G7ILE5 | 91.066 | 347 | 9 | 1 | 1 | 347 | 1 | 325 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0205510 | Msa0233530 | 0.821429 | 4.056751e-53 | -8.615850e-47 |
| Msa0233530 | Msa0233540 | 0.815969 | 7.041115e-52 | -8.615850e-47 |
| Msa0233530 | Msa0735660 | 0.843129 | 1.694168e-58 | -8.615850e-47 |
| Msa0233530 | Msa0743720 | 0.804691 | 1.913143e-49 | -8.615850e-47 |
| Msa0233530 | Msa0777230 | 0.810370 | 1.192177e-50 | -8.615850e-47 |
| Msa0233530 | Msa0820850 | 0.802676 | 5.011291e-49 | -8.615850e-47 |
| Msa0233530 | Msa0993600 | 0.804547 | 2.050278e-49 | -8.615850e-47 |
| Msa0233530 | Msa1000900 | 0.801166 | 1.023478e-48 | -8.615850e-47 |
| Msa0233530 | Msa1319800 | 0.802377 | 5.774461e-49 | -8.615850e-47 |
| Msa0233530 | Msa1348950 | 0.838504 | 2.764426e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233530 | MtrunA17_Chr2g0281281 | 91.066 | 347 | 9 | 1 | 1 | 347 | 1 | 325 | 0.0 | 628 |
| Msa0233530 | MtrunA17_Chr2g0281301 | 87.896 | 347 | 20 | 1 | 1 | 347 | 14 | 338 | 0.0 | 603 |
| Msa0233530 | MtrunA17_Chr4g0013331 | 31.034 | 348 | 212 | 5 | 1 | 346 | 52 | 373 | 3.04e-37 | 137 |
| Msa0233530 | MtrunA17_Chr8g0365421 | 29.330 | 358 | 187 | 14 | 1 | 345 | 76 | 380 | 1.54e-24 | 102 |
| Msa0233530 | MtrunA17_Chr3g0128511 | 28.037 | 321 | 203 | 4 | 30 | 346 | 40 | 336 | 1.25e-19 | 88.6 |
| Msa0233530 | MtrunA17_Chr4g0045041 | 29.752 | 242 | 138 | 7 | 26 | 261 | 315 | 530 | 2.02e-19 | 89.4 |
| Msa0233530 | MtrunA17_Chr4g0014541 | 26.479 | 355 | 199 | 12 | 10 | 345 | 16 | 327 | 2.96e-19 | 87.4 |
| Msa0233530 | MtrunA17_Chr4g0014971 | 27.887 | 355 | 195 | 13 | 10 | 345 | 16 | 328 | 5.26e-19 | 86.7 |
| Msa0233530 | MtrunA17_Chr4g0015091 | 27.378 | 347 | 206 | 10 | 10 | 345 | 16 | 327 | 2.10e-18 | 84.7 |
| Msa0233530 | MtrunA17_Chr4g0014691 | 26.197 | 355 | 200 | 12 | 10 | 345 | 16 | 327 | 4.92e-18 | 84.0 |
| Msa0233530 | MtrunA17_Chr4g0045061 | 28.455 | 246 | 136 | 8 | 26 | 261 | 315 | 530 | 6.35e-18 | 85.1 |
| Msa0233530 | MtrunA17_Chr4g0014951 | 25.905 | 359 | 197 | 12 | 10 | 345 | 16 | 328 | 7.33e-17 | 80.5 |
| Msa0233530 | MtrunA17_Chr4g0015051 | 25.926 | 351 | 207 | 10 | 10 | 345 | 16 | 328 | 1.14e-16 | 79.7 |
| Msa0233530 | MtrunA17_Chr6g0453201 | 28.000 | 350 | 178 | 13 | 13 | 345 | 24 | 316 | 1.98e-16 | 79.0 |
| Msa0233530 | MtrunA17_Chr4g0014931 | 25.429 | 350 | 210 | 10 | 10 | 345 | 16 | 328 | 2.11e-16 | 79.0 |
| Msa0233530 | MtrunA17_Chr7g0235021 | 24.069 | 349 | 215 | 8 | 10 | 345 | 16 | 327 | 2.53e-16 | 79.0 |
| Msa0233530 | MtrunA17_Chr2g0316731 | 25.068 | 367 | 217 | 10 | 2 | 345 | 27 | 358 | 1.21e-15 | 77.0 |
| Msa0233530 | MtrunA17_Chr8g0351481 | 30.165 | 242 | 126 | 7 | 10 | 239 | 13 | 223 | 7.96e-14 | 71.6 |
| Msa0233530 | MtrunA17_Chr8g0351271 | 30.165 | 242 | 126 | 7 | 10 | 239 | 13 | 223 | 8.83e-14 | 71.6 |
| Msa0233530 | MtrunA17_Chr7g0228011 | 28.530 | 347 | 159 | 12 | 23 | 345 | 32 | 313 | 1.15e-13 | 70.9 |
| Msa0233530 | MtrunA17_Chr6g0465501 | 25.882 | 340 | 177 | 12 | 23 | 345 | 43 | 324 | 3.60e-13 | 69.7 |
| Msa0233530 | MtrunA17_Chr6g0466321 | 26.176 | 340 | 176 | 12 | 23 | 345 | 43 | 324 | 3.88e-13 | 69.3 |
| Msa0233530 | MtrunA17_Chr6g0453191 | 29.008 | 262 | 137 | 9 | 13 | 259 | 24 | 251 | 6.89e-12 | 65.5 |
| Msa0233530 | MtrunA17_Chr8g0385221 | 22.905 | 358 | 192 | 10 | 1 | 300 | 54 | 385 | 3.35e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233530 | AT4G21580.1 | 69.275 | 345 | 84 | 1 | 1 | 345 | 1 | 323 | 1.12e-171 | 480 |
| Msa0233530 | AT4G21580.3 | 67.826 | 345 | 83 | 1 | 1 | 345 | 1 | 317 | 4.18e-167 | 468 |
| Msa0233530 | AT4G21580.2 | 67.308 | 312 | 80 | 1 | 34 | 345 | 1 | 290 | 1.17e-149 | 423 |
| Msa0233530 | AT5G61510.1 | 30.086 | 349 | 214 | 6 | 1 | 346 | 84 | 405 | 9.41e-35 | 131 |
| Msa0233530 | AT5G61510.2 | 29.464 | 336 | 207 | 6 | 14 | 346 | 40 | 348 | 3.44e-31 | 120 |
| Msa0233530 | AT1G23740.1 | 29.167 | 360 | 185 | 12 | 1 | 345 | 78 | 382 | 1.54e-25 | 106 |
| Msa0233530 | AT3G56460.1 | 25.706 | 354 | 216 | 8 | 7 | 345 | 15 | 336 | 1.03e-19 | 89.4 |
| Msa0233530 | AT1G49670.1 | 28.571 | 238 | 138 | 6 | 28 | 261 | 317 | 526 | 2.78e-17 | 83.6 |
| Msa0233530 | AT4G13010.1 | 26.724 | 348 | 207 | 9 | 10 | 345 | 16 | 327 | 1.08e-16 | 80.5 |
| Msa0233530 | AT3G15090.1 | 26.685 | 371 | 206 | 14 | 2 | 345 | 33 | 364 | 4.52e-16 | 79.0 |
| Msa0233530 | AT1G49670.2 | 27.799 | 259 | 136 | 8 | 28 | 261 | 317 | 549 | 1.48e-15 | 78.2 |
| Msa0233530 | AT5G63620.1 | 24.167 | 360 | 185 | 12 | 1 | 300 | 56 | 387 | 4.45e-13 | 70.1 |
| Msa0233530 | AT5G63620.2 | 23.889 | 360 | 186 | 12 | 1 | 300 | 56 | 387 | 8.27e-13 | 69.3 |
Find 101 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAACCACAAATTTATTTA+AGG | 0.127326 | 2_2:+5868204 | None:intergenic |
| GTAGATCTACGTGCTTTATT+TGG | 0.228957 | 2_2:-5869420 | Msa0233530:CDS |
| CATGTTTCCAAGTGGAAAAT+TGG | 0.267254 | 2_2:-5870933 | Msa0233530:CDS |
| ATGAGGACTTCATTGTCTTT+AGG | 0.274980 | 2_2:+5871083 | None:intergenic |
| ACCTTTCCTTCTGCAATTGC+AGG | 0.276088 | 2_2:+5868411 | None:intergenic |
| TTCAGTGATGATTAATTCAT+TGG | 0.277425 | 2_2:+5871252 | None:intergenic |
| TATGACGAGCCGGCTATCTA+AGG | 0.294837 | 2_2:-5870241 | Msa0233530:CDS |
| TTCGTTAATTCTCAGGTTCA+TGG | 0.306876 | 2_2:-5870023 | Msa0233530:intron |
| TAATAGTTTAGAGACTAAAT+TGG | 0.327385 | 2_2:-5871380 | Msa0233530:five_prime_UTR |
| ACATCTAAACATACGAAAAC+TGG | 0.327949 | 2_2:+5869897 | None:intergenic |
| AATCATACGACTTACCAATA+AGG | 0.346709 | 2_2:+5870212 | None:intergenic |
| TGATGTTATTCTTGATTGTA+TGG | 0.350274 | 2_2:-5869532 | Msa0233530:CDS |
| ACTACCTGCTAAGAAATATC+TGG | 0.351300 | 2_2:+5869808 | None:intergenic |
| TCTTGAAGTTGTAGAACTTC+AGG | 0.359966 | 2_2:+5871122 | None:intergenic |
| TATCCAGGTCTTGAATGTTC+TGG | 0.375437 | 2_2:-5870978 | Msa0233530:CDS |
| TGCGGAGGCTCACCGGCTTA+TGG | 0.376154 | 2_2:-5868349 | Msa0233530:CDS |
| AGAGAAATCCCGGTTGGAAC+TGG | 0.378480 | 2_2:+5870318 | None:intergenic |
| TGGCGAGAATAACAATTTAG+AGG | 0.381285 | 2_2:-5871360 | Msa0233530:five_prime_UTR |
| TCAGTGATGATTAATTCATT+GGG | 0.381402 | 2_2:+5871253 | None:intergenic |
| TACTTGAAACTTGAATGTTT+TGG | 0.387024 | 2_2:-5868102 | Msa0233530:three_prime_UTR |
| CACAAGTCAACAGCCAAGTT+AGG | 0.392071 | 2_2:+5871300 | None:intergenic |
| CAAGTGGAAAATTGGTGATC+AGG | 0.404498 | 2_2:-5870925 | Msa0233530:intron |
| CTTCATTGTCTTTAGGTTGA+GGG | 0.404911 | 2_2:+5871090 | None:intergenic |
| TCTAACCTTAAATAAATTTG+TGG | 0.405795 | 2_2:-5868209 | Msa0233530:three_prime_UTR |
| ACTTCATTGTCTTTAGGTTG+AGG | 0.418079 | 2_2:+5871089 | None:intergenic |
| GATAGGGGCTTGCACCTTGT+GGG | 0.418781 | 2_2:+5870997 | None:intergenic |
| CAGGTATGTGCTCTTCTAGC+TGG | 0.420815 | 2_2:-5870387 | Msa0233530:CDS |
| CAAGTTCTTCCAGTTCCAAC+CGG | 0.428875 | 2_2:-5870327 | Msa0233530:CDS |
| GGGCTTGCACCTTGTGGGAT+AGG | 0.434128 | 2_2:+5871002 | None:intergenic |
| TATTCCAGATATTTCTTAGC+AGG | 0.452233 | 2_2:-5869812 | Msa0233530:CDS |
| TCAAAAGTATTTGTTACTGC+AGG | 0.463368 | 2_2:-5869948 | Msa0233530:CDS |
| CTGAAGTGGAGAAGAATGTT+TGG | 0.467969 | 2_2:-5868434 | Msa0233530:CDS |
| GCCTTTCCTTTGAACAGTAT+CGG | 0.470617 | 2_2:+5871031 | None:intergenic |
| ATGGAAAGCAGTCAGCATAT+TGG | 0.471076 | 2_2:-5868330 | Msa0233530:CDS |
| TTACAAAACAGAGGACTTTG+TGG | 0.473910 | 2_2:-5869735 | Msa0233530:CDS |
| GGATAGGGGCTTGCACCTTG+TGG | 0.476718 | 2_2:+5870996 | None:intergenic |
| AGAACATTCAAGACCTGGAT+AGG | 0.477853 | 2_2:+5870980 | None:intergenic |
| CTGAAGCTGCGGAGGCTCAC+CGG | 0.480756 | 2_2:-5868356 | Msa0233530:CDS |
| GGCTTGCACCTTGTGGGATA+GGG | 0.480797 | 2_2:+5871003 | None:intergenic |
| GCAAGGGTAAAGGAAGAAAC+TGG | 0.482737 | 2_2:-5869713 | Msa0233530:CDS |
| GGACTTTGTGGCAAGGGTAA+AGG | 0.486871 | 2_2:-5869723 | Msa0233530:CDS |
| CCCTCTTTCTGAAGCTGCGG+AGG | 0.494418 | 2_2:-5868364 | Msa0233530:CDS |
| CATGGAGGTTCAAGTGGAAT+CGG | 0.496039 | 2_2:-5870005 | Msa0233530:CDS |
| TATGTTATTAACTCTGTACT+AGG | 0.498366 | 2_2:-5868168 | Msa0233530:three_prime_UTR |
| ATACAAAGAGAAGAGAATGA+AGG | 0.517710 | 2_2:-5871171 | Msa0233530:exon |
| ATGACGAGCCGGCTATCTAA+GGG | 0.518331 | 2_2:-5870240 | Msa0233530:CDS |
| AGCAGCGATCGTTGCTGAAG+TGG | 0.519106 | 2_2:-5868448 | Msa0233530:CDS |
| GCCTGCAATTGCAGAAGGAA+AGG | 0.519570 | 2_2:-5868412 | Msa0233530:CDS |
| GAACATTCAAGACCTGGATA+GGG | 0.521615 | 2_2:+5870981 | None:intergenic |
| GGGAATGATTTGTAAACCAC+AGG | 0.522474 | 2_2:+5868384 | None:intergenic |
| GGCAAGCGTCTCACTGTACA+AGG | 0.526294 | 2_2:-5869399 | Msa0233530:intron |
| TGAAGTTCTACAACTTCAAG+AGG | 0.532066 | 2_2:-5871120 | Msa0233530:CDS |
| AAAACATTCAAGTTTCAAGT+AGG | 0.532167 | 2_2:+5868104 | None:intergenic |
| GATGTTATTCTTGATTGTAT+GGG | 0.533185 | 2_2:-5869531 | Msa0233530:CDS |
| GCCTCCGCAGCTTCAGAAAG+AGG | 0.533973 | 2_2:+5868363 | None:intergenic |
| CAGGTTCATGGAGGTTCAAG+TGG | 0.534759 | 2_2:-5870011 | Msa0233530:CDS |
| ACTGGAAGAACTTGTCCCTC+AGG | 0.537643 | 2_2:+5870336 | None:intergenic |
| CAAGGTGCAAGCCCCTATCC+AGG | 0.537944 | 2_2:-5870993 | Msa0233530:CDS |
| TGCATCCTTCAGAGAAATCC+CGG | 0.538209 | 2_2:+5870308 | None:intergenic |
| TCCAACCGGGATTTCTCTGA+AGG | 0.542035 | 2_2:-5870313 | Msa0233530:CDS |
| GCCGATACTGTTCAAAGGAA+AGG | 0.550383 | 2_2:-5871032 | Msa0233530:CDS |
| TCTGGAACTATTGAATCCGT+TGG | 0.554523 | 2_2:-5870960 | Msa0233530:CDS |
| GCTGACTGCTTTCCATAAGC+CGG | 0.555663 | 2_2:+5868337 | None:intergenic |
| TGTGCTCTTCTAGCTGGAGG+TGG | 0.560275 | 2_2:-5870381 | Msa0233530:CDS |
| CTTGGAAACATGTTTACCAA+CGG | 0.565531 | 2_2:+5870944 | None:intergenic |
| AAGGAAGAAACTGGCGGACA+AGG | 0.566694 | 2_2:-5869704 | Msa0233530:intron |
| GTTTGGCCTGCAATTGCAGA+AGG | 0.566773 | 2_2:-5868417 | Msa0233530:CDS |
| AACAGAGGACTTTGTGGCAA+GGG | 0.571801 | 2_2:-5869729 | Msa0233530:CDS |
| AAGTTCTTCCAGTTCCAACC+GGG | 0.575692 | 2_2:-5870326 | Msa0233530:CDS |
| TCCTTCAGAGAAATCCCGGT+TGG | 0.578830 | 2_2:+5870312 | None:intergenic |
| ATATTTCTTAGCAGGTAGTG+AGG | 0.580567 | 2_2:-5869804 | Msa0233530:CDS |
| CCTCCGCAGCTTCAGAAAGA+GGG | 0.582608 | 2_2:+5868364 | None:intergenic |
| GTATGTGCTCTTCTAGCTGG+AGG | 0.586099 | 2_2:-5870384 | Msa0233530:CDS |
| TGTAGAACTTCAGGTCCACC+TGG | 0.592318 | 2_2:+5871131 | None:intergenic |
| ATTCCCTCTTTCTGAAGCTG+CGG | 0.593597 | 2_2:-5868367 | Msa0233530:CDS |
| ATGTTATTAACTCTGTACTA+GGG | 0.595858 | 2_2:-5868167 | Msa0233530:three_prime_UTR |
| CACTGTTAAGAGCAGTTGCG+TGG | 0.597341 | 2_2:+5871054 | None:intergenic |
| CAGTGATGATTAATTCATTG+GGG | 0.602823 | 2_2:+5871254 | None:intergenic |
| AACATTCAAGACCTGGATAG+GGG | 0.603099 | 2_2:+5870982 | None:intergenic |
| AAGAGTATTGGAGCTGATGT+TGG | 0.603468 | 2_2:-5869764 | Msa0233530:CDS |
| GTTCCAGAACATTCAAGACC+TGG | 0.611446 | 2_2:+5870975 | None:intergenic |
| TATTGGAAAGATATTGCTTG+TGG | 0.612988 | 2_2:-5868313 | Msa0233530:CDS |
| AGAAGGAAAGGTTAAGCCTG+TGG | 0.612996 | 2_2:-5868400 | Msa0233530:CDS |
| GGCTTCAATAACAAGAAAAG+CGG | 0.625673 | 2_2:+5869918 | None:intergenic |
| ACAGTGCCGATACTGTTCAA+AGG | 0.632479 | 2_2:-5871037 | Msa0233530:CDS |
| CAGTTGCGTGGACTTTGATG+AGG | 0.632675 | 2_2:+5871066 | None:intergenic |
| TTTATTATCGGCTTTCAAGG+GGG | 0.643203 | 2_2:-5869456 | Msa0233530:CDS |
| TTGGTAAACATGTTTCCAAG+TGG | 0.643296 | 2_2:-5870941 | Msa0233530:CDS |
| AAACAGAGGACTTTGTGGCA+AGG | 0.650379 | 2_2:-5869730 | Msa0233530:CDS |
| GACGAGCCGGCTATCTAAGG+GGG | 0.651572 | 2_2:-5870238 | Msa0233530:CDS |
| CATTGATCAAGTATCTACGA+TGG | 0.656441 | 2_2:+5868282 | None:intergenic |
| TGAGAAAGTAGCAGTTCCTG+AGG | 0.656971 | 2_2:-5870352 | Msa0233530:CDS |
| GTTAATTCTCAGGTTCATGG+AGG | 0.666886 | 2_2:-5870020 | Msa0233530:intron |
| GAGAAAGTAGCAGTTCCTGA+GGG | 0.670291 | 2_2:-5870351 | Msa0233530:CDS |
| GCTATTGTAATAACAACACC+AGG | 0.682237 | 2_2:-5871149 | Msa0233530:CDS |
| TGACGAGCCGGCTATCTAAG+GGG | 0.683970 | 2_2:-5870239 | Msa0233530:CDS |
| CTGAGGTTGCATGTACTGTG+TGG | 0.713501 | 2_2:-5870275 | Msa0233530:CDS |
| TGGTATCAATTACAAAACAG+AGG | 0.714141 | 2_2:-5869744 | Msa0233530:CDS |
| ATTGTAATAACAACACCAGG+TGG | 0.715936 | 2_2:-5871146 | Msa0233530:CDS |
| ATTCAGATAGCTAAGTACCG+AGG | 0.723680 | 2_2:-5869972 | Msa0233530:CDS |
| AGGGTAAAGGAAGAAACTGG+CGG | 0.742355 | 2_2:-5869710 | Msa0233530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTACTAGAAATA+AGG | - | chr2_2:5868771-5868790 | Msa0233530:intron | 10.0% |
| !! | TATGAAAAAAAAAGTAAAAA+CGG | - | chr2_2:5868907-5868926 | Msa0233530:intron | 10.0% |
| !! | TATATTCAATAATTGAATTG+TGG | - | chr2_2:5868618-5868637 | Msa0233530:intron | 15.0% |
| !! | ATATTCAATAATTGAATTGT+GGG | - | chr2_2:5868619-5868638 | Msa0233530:intron | 15.0% |
| !!! | TTATAGGGTTATTTTTTTTA+TGG | + | chr2_2:5870422-5870441 | None:intergenic | 15.0% |
| !!! | TTTATAATAAGTTTTGTTTG+AGG | - | chr2_2:5870861-5870880 | Msa0233530:intron | 15.0% |
| !! | ATCAAATATTAAAGAATGAT+AGG | + | chr2_2:5870958-5870977 | None:intergenic | 15.0% |
| !! | ATTCTTTAATATTTGATTGT+GGG | - | chr2_2:5870961-5870980 | Msa0233530:CDS | 15.0% |
| !! | TAATAGTTTAGAGACTAAAT+TGG | - | chr2_2:5868096-5868115 | Msa0233530:three_prime_UTR | 20.0% |
| !!! | ATTCATATTTTTCTCCAATT+GGG | - | chr2_2:5868588-5868607 | Msa0233530:intron | 20.0% |
| !!! | AGTTCTAGTTATTATATAAC+TGG | + | chr2_2:5868668-5868687 | None:intergenic | 20.0% |
| !! | TGAATGGATATTATAATATG+AGG | - | chr2_2:5869054-5869073 | Msa0233530:intron | 20.0% |
| !! | ATATAGATCATATAATGTTG+AGG | + | chr2_2:5869842-5869861 | None:intergenic | 20.0% |
| !! | CTAAAAAACAAGATATCAAT+TGG | + | chr2_2:5869869-5869888 | None:intergenic | 20.0% |
| !!! | TTGATATCTTGTTTTTTAGT+TGG | - | chr2_2:5869870-5869889 | Msa0233530:intron | 20.0% |
| !! | AAATTACTAATGTAAGTAAC+TGG | + | chr2_2:5870217-5870236 | None:intergenic | 20.0% |
| !! | TTGTGAGATTCATTATTATA+GGG | + | chr2_2:5870437-5870456 | None:intergenic | 20.0% |
| !! | ATTGTGAGATTCATTATTAT+AGG | + | chr2_2:5870438-5870457 | None:intergenic | 20.0% |
| !! | CATTCTTTAATATTTGATTG+TGG | - | chr2_2:5870960-5870979 | Msa0233530:CDS | 20.0% |
| !!! | ACTTTTGAATAATTTGAGTT+TGG | - | chr2_2:5871232-5871251 | Msa0233530:five_prime_UTR | 20.0% |
| !! | TCTAACCTTAAATAAATTTG+TGG | - | chr2_2:5871267-5871286 | Msa0233530:five_prime_UTR | 20.0% |
| !! | GTAAACCACAAATTTATTTA+AGG | + | chr2_2:5871275-5871294 | None:intergenic | 20.0% |
| !! | ATCATCAATTTTTCCTAACT+TGG | - | chr2_2:5868163-5868182 | Msa0233530:three_prime_UTR | 25.0% |
| ! | TCAGTGATGATTAATTCATT+GGG | + | chr2_2:5868226-5868245 | None:intergenic | 25.0% |
| ! | TTCAGTGATGATTAATTCAT+TGG | + | chr2_2:5868227-5868246 | None:intergenic | 25.0% |
| !! | CATTCATATTTTTCTCCAAT+TGG | - | chr2_2:5868587-5868606 | Msa0233530:intron | 25.0% |
| ! | GAATATAAAGAAAACCCAAT+TGG | + | chr2_2:5868605-5868624 | None:intergenic | 25.0% |
| !! | ACTGTTTTCATAATCTATCT+TGG | - | chr2_2:5868878-5868897 | Msa0233530:intron | 25.0% |
| ! | ATATTATAATATGAGGTGTG+TGG | - | chr2_2:5869061-5869080 | Msa0233530:intron | 25.0% |
| !! | TCCTGGTCTATTTTATTATT+TGG | - | chr2_2:5869401-5869420 | Msa0233530:CDS | 25.0% |
| ! | ACCAAATAATAAAATAGACC+AGG | + | chr2_2:5869405-5869424 | None:intergenic | 25.0% |
| ! | AACGAAGTTAATCAACTATT+AGG | + | chr2_2:5869439-5869458 | None:intergenic | 25.0% |
| !! | TAACAAATACTTTTGATCCT+CGG | + | chr2_2:5869524-5869543 | None:intergenic | 25.0% |
| ! | GGTAATATTTATCATTGATG+TGG | - | chr2_2:5869911-5869930 | Msa0233530:CDS | 25.0% |
| ! | AATATTTATCATTGATGTGG+TGG | - | chr2_2:5869914-5869933 | Msa0233530:CDS | 25.0% |
| ! | TGATGTTATTCTTGATTGTA+TGG | - | chr2_2:5869944-5869963 | Msa0233530:CDS | 25.0% |
| ! | GATGTTATTCTTGATTGTAT+GGG | - | chr2_2:5869945-5869964 | Msa0233530:CDS | 25.0% |
| !!! | CTTGATAGCTTAAATTTTGA+TGG | - | chr2_2:5869990-5870009 | Msa0233530:CDS | 25.0% |
| !!! | ATAGCTTAAATTTTGATGGA+AGG | - | chr2_2:5869994-5870013 | Msa0233530:CDS | 25.0% |
| !!! | TTTTTATTATCGGCTTTCAA+GGG | - | chr2_2:5870018-5870037 | Msa0233530:intron | 25.0% |
| ! | TTCTGCATCTTCTAATATAT+AGG | + | chr2_2:5870180-5870199 | None:intergenic | 25.0% |
| ! | ATGTTGCAAAATATCTACTA+AGG | + | chr2_2:5870509-5870528 | None:intergenic | 25.0% |
| !! | TAGTAGATATTTTGCAACAT+TGG | - | chr2_2:5870509-5870528 | Msa0233530:intron | 25.0% |
| ! | AGAAATAAAATTCTTGTGGT+AGG | - | chr2_2:5870541-5870560 | Msa0233530:intron | 25.0% |
| ! | CTAATATGACCAACTTTAAT+CGG | + | chr2_2:5870613-5870632 | None:intergenic | 25.0% |
| ! | AAGGTGATTGGTATTTATAA+AGG | + | chr2_2:5870788-5870807 | None:intergenic | 25.0% |
| !! | TCTTTTTATTAGTGTGGTTA+TGG | - | chr2_2:5870926-5870945 | Msa0233530:CDS | 25.0% |
| ! | TATGTTATTAACTCTGTACT+AGG | - | chr2_2:5871308-5871327 | Msa0233530:five_prime_UTR | 25.0% |
| ! | ATGTTATTAACTCTGTACTA+GGG | - | chr2_2:5871309-5871328 | Msa0233530:five_prime_UTR | 25.0% |
| !! | AAAACATTCAAGTTTCAAGT+AGG | + | chr2_2:5871375-5871394 | None:intergenic | 25.0% |
| !! | TACTTGAAACTTGAATGTTT+TGG | - | chr2_2:5871374-5871393 | Msa0233530:five_prime_UTR | 25.0% |
| CAGTGATGATTAATTCATTG+GGG | + | chr2_2:5868225-5868244 | None:intergenic | 30.0% | |
| ATACAAAGAGAAGAGAATGA+AGG | - | chr2_2:5868305-5868324 | Msa0233530:exon | 30.0% | |
| GAGTAGCTAATTCAAATCAA+AGG | + | chr2_2:5868700-5868719 | None:intergenic | 30.0% | |
| ACTAGAAATAAGGTTCTGTT+TGG | - | chr2_2:5868781-5868800 | Msa0233530:intron | 30.0% | |
| TTAAGTGATGATAAGTGCTT+TGG | - | chr2_2:5868817-5868836 | Msa0233530:intron | 30.0% | |
| AATCATACGACTTACCAATA+AGG | + | chr2_2:5869267-5869286 | None:intergenic | 30.0% | |
| TCATTGTATAACTATCTTCC+TGG | - | chr2_2:5869384-5869403 | Msa0233530:intron | 30.0% | |
| GATTAACTTCGTTAATTCTC+AGG | - | chr2_2:5869446-5869465 | Msa0233530:CDS | 30.0% | |
| !! | TCAAAAGTATTTGTTACTGC+AGG | - | chr2_2:5869528-5869547 | Msa0233530:CDS | 30.0% |
| ACATCTAAACATACGAAAAC+TGG | + | chr2_2:5869582-5869601 | None:intergenic | 30.0% | |
| AAATATCTGCAAACATCACT+TGG | + | chr2_2:5869644-5869663 | None:intergenic | 30.0% | |
| TATTCCAGATATTTCTTAGC+AGG | - | chr2_2:5869664-5869683 | Msa0233530:intron | 30.0% | |
| TGGTATCAATTACAAAACAG+AGG | - | chr2_2:5869732-5869751 | Msa0233530:CDS | 30.0% | |
| ATTCACATCATGCTTCATAT+CGG | + | chr2_2:5869809-5869828 | None:intergenic | 30.0% | |
| ATATAATGTTGAGGAATGCT+TGG | + | chr2_2:5869833-5869852 | None:intergenic | 30.0% | |
| ! | GATGGAAGGCTTTTTATTAT+CGG | - | chr2_2:5870008-5870027 | Msa0233530:CDS | 30.0% |
| !!! | CTTTTTATTATCGGCTTTCA+AGG | - | chr2_2:5870017-5870036 | Msa0233530:intron | 30.0% |
| !!! | TTTTATTATCGGCTTTCAAG+GGG | - | chr2_2:5870019-5870038 | Msa0233530:intron | 30.0% |
| TGCCTATACAAGTAAAAACA+CGG | - | chr2_2:5870146-5870165 | Msa0233530:intron | 30.0% | |
| AGTTTATGAAATTGCACCTA+AGG | - | chr2_2:5870251-5870270 | Msa0233530:CDS | 30.0% | |
| !! | GCATTGATGATGACTATATA+AGG | - | chr2_2:5870458-5870477 | Msa0233530:intron | 30.0% |
| TTGCAAAATATCTACTAAGG+TGG | + | chr2_2:5870506-5870525 | None:intergenic | 30.0% | |
| ! | CATTAACTACCGATTAAAGT+TGG | - | chr2_2:5870601-5870620 | Msa0233530:intron | 30.0% |
| ATTGAGTCAAATCAGTTAGA+GGG | - | chr2_2:5870746-5870765 | Msa0233530:intron | 30.0% | |
| ATAAATACCAATCACCTTTG+TGG | - | chr2_2:5870790-5870809 | Msa0233530:intron | 30.0% | |
| AAAAATGATGTGTCTACAGA+AGG | + | chr2_2:5870817-5870836 | None:intergenic | 30.0% | |
| !! | TCTGTAGACACATCATTTTT+CGG | - | chr2_2:5870817-5870836 | Msa0233530:intron | 30.0% |
| ! | GGAAGTTCTTTTTATTAGTG+TGG | - | chr2_2:5870920-5870939 | Msa0233530:intron | 30.0% |
| TATTGGAAAGATATTGCTTG+TGG | - | chr2_2:5871163-5871182 | Msa0233530:exon | 30.0% | |
| TGGCGAGAATAACAATTTAG+AGG | - | chr2_2:5868116-5868135 | Msa0233530:three_prime_UTR | 35.0% | |
| GCTATTGTAATAACAACACC+AGG | - | chr2_2:5868327-5868346 | Msa0233530:CDS | 35.0% | |
| ATTGTAATAACAACACCAGG+TGG | - | chr2_2:5868330-5868349 | Msa0233530:CDS | 35.0% | |
| TCTTGAAGTTGTAGAACTTC+AGG | + | chr2_2:5868357-5868376 | None:intergenic | 35.0% | |
| TGAAGTTCTACAACTTCAAG+AGG | - | chr2_2:5868356-5868375 | Msa0233530:CDS | 35.0% | |
| !! | CTTCATTGTCTTTAGGTTGA+GGG | + | chr2_2:5868389-5868408 | None:intergenic | 35.0% |
| !! | ACTTCATTGTCTTTAGGTTG+AGG | + | chr2_2:5868390-5868409 | None:intergenic | 35.0% |
| ATGAGGACTTCATTGTCTTT+AGG | + | chr2_2:5868396-5868415 | None:intergenic | 35.0% | |
| CTTGGAAACATGTTTACCAA+CGG | + | chr2_2:5868535-5868554 | None:intergenic | 35.0% | |
| TTGGTAAACATGTTTCCAAG+TGG | - | chr2_2:5868535-5868554 | Msa0233530:intron | 35.0% | |
| CATGTTTCCAAGTGGAAAAT+TGG | - | chr2_2:5868543-5868562 | Msa0233530:intron | 35.0% | |
| ! | TTTTCATAAGCTCTTCCGAA+CGG | - | chr2_2:5868952-5868971 | Msa0233530:intron | 35.0% |
| TCACATAGGGTTGTTTAGAT+TGG | + | chr2_2:5869015-5869034 | None:intergenic | 35.0% | |
| TGTTGCGTTGTGATTATGAA+TGG | - | chr2_2:5869038-5869057 | Msa0233530:intron | 35.0% | |
| ! | TAATCAGCTGACAACTTTTC+TGG | - | chr2_2:5869288-5869307 | Msa0233530:intron | 35.0% |
| TCTTTGCAAGCATGGTTATT+GGG | - | chr2_2:5869327-5869346 | Msa0233530:intron | 35.0% | |
| TTCGTTAATTCTCAGGTTCA+TGG | - | chr2_2:5869453-5869472 | Msa0233530:CDS | 35.0% | |
| GGCTTCAATAACAAGAAAAG+CGG | + | chr2_2:5869561-5869580 | None:intergenic | 35.0% | |
| ACTACCTGCTAAGAAATATC+TGG | + | chr2_2:5869671-5869690 | None:intergenic | 35.0% | |
| ATATTTCTTAGCAGGTAGTG+AGG | - | chr2_2:5869672-5869691 | Msa0233530:intron | 35.0% | |
| !! | CTAGCTTTTTGCAAGAGTAT+TGG | - | chr2_2:5869700-5869719 | Msa0233530:intron | 35.0% |
| TTACAAAACAGAGGACTTTG+TGG | - | chr2_2:5869741-5869760 | Msa0233530:CDS | 35.0% | |
| TGGTTGCATAGATATGTGTT+AGG | - | chr2_2:5869890-5869909 | Msa0233530:intron | 35.0% | |
| !! | TTTATTATCGGCTTTCAAGG+GGG | - | chr2_2:5870020-5870039 | Msa0233530:intron | 35.0% |
| ! | GTAGATCTACGTGCTTTATT+TGG | - | chr2_2:5870056-5870075 | Msa0233530:intron | 35.0% |
| !! | AGCCGTGTTTTTACTTGTAT+AGG | + | chr2_2:5870151-5870170 | None:intergenic | 35.0% |
| TATGAAATTGCACCTAAGGT+TGG | - | chr2_2:5870255-5870274 | Msa0233530:CDS | 35.0% | |
| ATGAAATTGCACCTAAGGTT+GGG | - | chr2_2:5870256-5870275 | Msa0233530:CDS | 35.0% | |
| GAAGAAGCTTCAATGCAAAA+TGG | + | chr2_2:5870363-5870382 | None:intergenic | 35.0% | |
| ! | TTTTGCATTGAAGCTTCTTC+TGG | - | chr2_2:5870363-5870382 | Msa0233530:CDS | 35.0% |
| TCTACTAAGGTGGACAAAAA+TGG | + | chr2_2:5870496-5870515 | None:intergenic | 35.0% | |
| CGGCAGAAATAAAATTCTTG+TGG | - | chr2_2:5870537-5870556 | Msa0233530:intron | 35.0% | |
| CTTTCACGAACTGTTATACT+CGG | - | chr2_2:5870697-5870716 | Msa0233530:intron | 35.0% | |
| GATTGAGTCAAATCAGTTAG+AGG | - | chr2_2:5870745-5870764 | Msa0233530:intron | 35.0% | |
| ! | CAGCTTTTCCACAATTGAAA+CGG | - | chr2_2:5870898-5870917 | Msa0233530:intron | 35.0% |
| ! | AGCTTTTCCACAATTGAAAC+GGG | - | chr2_2:5870899-5870918 | Msa0233530:intron | 35.0% |
| CATTGATCAAGTATCTACGA+TGG | + | chr2_2:5871197-5871216 | None:intergenic | 35.0% | |
| GCCTTTCCTTTGAACAGTAT+CGG | + | chr2_2:5868448-5868467 | None:intergenic | 40.0% | |
| AACATTCAAGACCTGGATAG+GGG | + | chr2_2:5868497-5868516 | None:intergenic | 40.0% | |
| GAACATTCAAGACCTGGATA+GGG | + | chr2_2:5868498-5868517 | None:intergenic | 40.0% | |
| AGAACATTCAAGACCTGGAT+AGG | + | chr2_2:5868499-5868518 | None:intergenic | 40.0% | |
| TATCCAGGTCTTGAATGTTC+TGG | - | chr2_2:5868498-5868517 | Msa0233530:intron | 40.0% | |
| ! | TCTGGAACTATTGAATCCGT+TGG | - | chr2_2:5868516-5868535 | Msa0233530:intron | 40.0% |
| ! | CTGATCACCAATTTTCCACT+TGG | + | chr2_2:5868553-5868572 | None:intergenic | 40.0% |
| ! | CAAGTGGAAAATTGGTGATC+AGG | - | chr2_2:5868551-5868570 | Msa0233530:intron | 40.0% |
| !!! | CGACTATTTTTATGACGAGC+CGG | - | chr2_2:5869225-5869244 | Msa0233530:intron | 40.0% |
| ATCTAAGGGGGAAACCTTAT+TGG | - | chr2_2:5869250-5869269 | Msa0233530:intron | 40.0% | |
| TAGCATACTCTTTGCAAGCA+TGG | - | chr2_2:5869319-5869338 | Msa0233530:intron | 40.0% | |
| CTCTTTGCAAGCATGGTTAT+TGG | - | chr2_2:5869326-5869345 | Msa0233530:intron | 40.0% | |
| GTTAATTCTCAGGTTCATGG+AGG | - | chr2_2:5869456-5869475 | Msa0233530:CDS | 40.0% | |
| ! | ATTCAGATAGCTAAGTACCG+AGG | - | chr2_2:5869504-5869523 | Msa0233530:CDS | 40.0% |
| !! | AAGAGTATTGGAGCTGATGT+TGG | - | chr2_2:5869712-5869731 | Msa0233530:CDS | 40.0% |
| TTTATCATTGATGTGGTGGC+AGG | - | chr2_2:5869918-5869937 | Msa0233530:CDS | 40.0% | |
| ! | ATTTTGCAACATTGGACGCT+CGG | - | chr2_2:5870517-5870536 | Msa0233530:intron | 40.0% |
| TTCATTTGACAGCACACTAC+AGG | + | chr2_2:5870574-5870593 | None:intergenic | 40.0% | |
| CGTTTCAATTGTGGAAAAGC+TGG | + | chr2_2:5870900-5870919 | None:intergenic | 40.0% | |
| AGAACTTCCCGTTTCAATTG+TGG | + | chr2_2:5870909-5870928 | None:intergenic | 40.0% | |
| ! | TGATTGTGGGTTATGTTCAG+CGG | - | chr2_2:5870974-5870993 | Msa0233530:CDS | 40.0% |
| !!! | ACGATCGCTGCTTTATTTTC+TGG | + | chr2_2:5871020-5871039 | None:intergenic | 40.0% |
| CTGAAGTGGAGAAGAATGTT+TGG | - | chr2_2:5871042-5871061 | Msa0233530:CDS | 40.0% | |
| ! | GGGAATGATTTGTAAACCAC+AGG | + | chr2_2:5871095-5871114 | None:intergenic | 40.0% |
| ATGGAAAGCAGTCAGCATAT+TGG | - | chr2_2:5871146-5871165 | Msa0233530:CDS | 40.0% | |
| CACAAGTCAACAGCCAAGTT+AGG | + | chr2_2:5868179-5868198 | None:intergenic | 45.0% | |
| !! | ACAGTGCCGATACTGTTCAA+AGG | - | chr2_2:5868439-5868458 | Msa0233530:CDS | 45.0% |
| GCCGATACTGTTCAAAGGAA+AGG | - | chr2_2:5868444-5868463 | Msa0233530:CDS | 45.0% | |
| GTTCCAGAACATTCAAGACC+TGG | + | chr2_2:5868504-5868523 | None:intergenic | 45.0% | |
| !! | TAAGCACTTCTGAGACCGTT+CGG | + | chr2_2:5868970-5868989 | None:intergenic | 45.0% |
| CAACGCAACACACTCACATA+GGG | + | chr2_2:5869028-5869047 | None:intergenic | 45.0% | |
| ACAACGCAACACACTCACAT+AGG | + | chr2_2:5869029-5869048 | None:intergenic | 45.0% | |
| TGAGAAAGTAGCAGTTCCTG+AGG | - | chr2_2:5869124-5869143 | Msa0233530:intron | 45.0% | |
| GAGAAAGTAGCAGTTCCTGA+GGG | - | chr2_2:5869125-5869144 | Msa0233530:intron | 45.0% | |
| CAAGTTCTTCCAGTTCCAAC+CGG | - | chr2_2:5869149-5869168 | Msa0233530:intron | 45.0% | |
| AAGTTCTTCCAGTTCCAACC+GGG | - | chr2_2:5869150-5869169 | Msa0233530:intron | 45.0% | |
| TGCATCCTTCAGAGAAATCC+CGG | + | chr2_2:5869171-5869190 | None:intergenic | 45.0% | |
| !!! | GGATGCAGCTAGTTTTACTG+AGG | - | chr2_2:5869184-5869203 | Msa0233530:intron | 45.0% |
| CATGGAGGTTCAAGTGGAAT+CGG | - | chr2_2:5869471-5869490 | Msa0233530:CDS | 45.0% | |
| AAACAGAGGACTTTGTGGCA+AGG | - | chr2_2:5869746-5869765 | Msa0233530:CDS | 45.0% | |
| AACAGAGGACTTTGTGGCAA+GGG | - | chr2_2:5869747-5869766 | Msa0233530:CDS | 45.0% | |
| GCAAGGGTAAAGGAAGAAAC+TGG | - | chr2_2:5869763-5869782 | Msa0233530:CDS | 45.0% | |
| AGGGTAAAGGAAGAAACTGG+CGG | - | chr2_2:5869766-5869785 | Msa0233530:CDS | 45.0% | |
| AAATTGCACCTAAGGTTGGG+TGG | - | chr2_2:5870259-5870278 | Msa0233530:CDS | 45.0% | |
| AATTGCACCTAAGGTTGGGT+GGG | - | chr2_2:5870260-5870279 | Msa0233530:CDS | 45.0% | |
| GTCCACAATAGCTTACTGTG+TGG | - | chr2_2:5870657-5870676 | Msa0233530:intron | 45.0% | |
| TGCCACACAGTAAGCTATTG+TGG | + | chr2_2:5870662-5870681 | None:intergenic | 45.0% | |
| AGAAGGTCCACAAAGGTGAT+TGG | + | chr2_2:5870800-5870819 | None:intergenic | 45.0% | |
| TGTCTACAGAAGGTCCACAA+AGG | + | chr2_2:5870807-5870826 | None:intergenic | 45.0% | |
| ACCTTTCCTTCTGCAATTGC+AGG | + | chr2_2:5871068-5871087 | None:intergenic | 45.0% | |
| AGAAGGAAAGGTTAAGCCTG+TGG | - | chr2_2:5871076-5871095 | Msa0233530:CDS | 45.0% | |
| !! | ATTCCCTCTTTCTGAAGCTG+CGG | - | chr2_2:5871109-5871128 | Msa0233530:CDS | 45.0% |
| TGTAGAACTTCAGGTCCACC+TGG | + | chr2_2:5868348-5868367 | None:intergenic | 50.0% | |
| CAGTTGCGTGGACTTTGATG+AGG | + | chr2_2:5868413-5868432 | None:intergenic | 50.0% | |
| CACTGTTAAGAGCAGTTGCG+TGG | + | chr2_2:5868425-5868444 | None:intergenic | 50.0% | |
| ! | GGCTTTTACCCTATCCCACA+AGG | - | chr2_2:5868465-5868484 | Msa0233530:CDS | 50.0% |
| TATGAGGTGTGTGGCTTCAC+AGG | - | chr2_2:5869070-5869089 | Msa0233530:intron | 50.0% | |
| CAGGTATGTGCTCTTCTAGC+TGG | - | chr2_2:5869089-5869108 | Msa0233530:intron | 50.0% | |
| ! | GTATGTGCTCTTCTAGCTGG+AGG | - | chr2_2:5869092-5869111 | Msa0233530:intron | 50.0% |
| ACTGGAAGAACTTGTCCCTC+AGG | + | chr2_2:5869143-5869162 | None:intergenic | 50.0% | |
| AGAGAAATCCCGGTTGGAAC+TGG | + | chr2_2:5869161-5869180 | None:intergenic | 50.0% | |
| TCCAACCGGGATTTCTCTGA+AGG | - | chr2_2:5869163-5869182 | Msa0233530:intron | 50.0% | |
| TCCTTCAGAGAAATCCCGGT+TGG | + | chr2_2:5869167-5869186 | None:intergenic | 50.0% | |
| CTGAGGTTGCATGTACTGTG+TGG | - | chr2_2:5869201-5869220 | Msa0233530:intron | 50.0% | |
| TATGACGAGCCGGCTATCTA+AGG | - | chr2_2:5869235-5869254 | Msa0233530:intron | 50.0% | |
| ATGACGAGCCGGCTATCTAA+GGG | - | chr2_2:5869236-5869255 | Msa0233530:intron | 50.0% | |
| AGGTTTCCCCCTTAGATAGC+CGG | + | chr2_2:5869247-5869266 | None:intergenic | 50.0% | |
| CAGGTTCATGGAGGTTCAAG+TGG | - | chr2_2:5869465-5869484 | Msa0233530:CDS | 50.0% | |
| GGACTTTGTGGCAAGGGTAA+AGG | - | chr2_2:5869753-5869772 | Msa0233530:CDS | 50.0% | |
| ! | AAGGAAGAAACTGGCGGACA+AGG | - | chr2_2:5869772-5869791 | Msa0233530:CDS | 50.0% |
| !! | TCAAGGGGGTGTTTCTACAG+AGG | - | chr2_2:5870034-5870053 | Msa0233530:intron | 50.0% |
| ATTGCACCTAAGGTTGGGTG+GGG | - | chr2_2:5870261-5870280 | Msa0233530:CDS | 50.0% | |
| GACAGCACACTACAGGAACA+AGG | + | chr2_2:5870567-5870586 | None:intergenic | 50.0% | |
| GTTTGGCCTGCAATTGCAGA+AGG | - | chr2_2:5871059-5871078 | Msa0233530:CDS | 50.0% | |
| GCCTGCAATTGCAGAAGGAA+AGG | - | chr2_2:5871064-5871083 | Msa0233530:CDS | 50.0% | |
| GCTGACTGCTTTCCATAAGC+CGG | + | chr2_2:5871142-5871161 | None:intergenic | 50.0% | |
| GGCTTGCACCTTGTGGGATA+GGG | + | chr2_2:5868476-5868495 | None:intergenic | 55.0% | |
| GATAGGGGCTTGCACCTTGT+GGG | + | chr2_2:5868482-5868501 | None:intergenic | 55.0% | |
| ! | TGTGCTCTTCTAGCTGGAGG+TGG | - | chr2_2:5869095-5869114 | Msa0233530:intron | 55.0% |
| TGACGAGCCGGCTATCTAAG+GGG | - | chr2_2:5869237-5869256 | Msa0233530:intron | 55.0% | |
| GGCAAGCGTCTCACTGTACA+AGG | - | chr2_2:5870077-5870096 | Msa0233530:intron | 55.0% | |
| ACCTAAGGTTGGGTGGGGAT+AGG | - | chr2_2:5870266-5870285 | Msa0233530:CDS | 55.0% | |
| TCCTATCCCCACCCAACCTT+AGG | + | chr2_2:5870270-5870289 | None:intergenic | 55.0% | |
| ! | TGTGGGTTATGTTCAGCGGC+TGG | - | chr2_2:5870978-5870997 | Msa0233530:CDS | 55.0% |
| AGCAGCGATCGTTGCTGAAG+TGG | - | chr2_2:5871028-5871047 | Msa0233530:CDS | 55.0% | |
| CCTCCGCAGCTTCAGAAAGA+GGG | + | chr2_2:5871115-5871134 | None:intergenic | 55.0% | |
| GGGCTTGCACCTTGTGGGAT+AGG | + | chr2_2:5868477-5868496 | None:intergenic | 60.0% | |
| GGATAGGGGCTTGCACCTTG+TGG | + | chr2_2:5868483-5868502 | None:intergenic | 60.0% | |
| CAAGGTGCAAGCCCCTATCC+AGG | - | chr2_2:5868483-5868502 | Msa0233530:CDS | 60.0% | |
| GACGAGCCGGCTATCTAAGG+GGG | - | chr2_2:5869238-5869257 | Msa0233530:intron | 60.0% | |
| !! | CCCTCTTTCTGAAGCTGCGG+AGG | - | chr2_2:5871112-5871131 | Msa0233530:CDS | 60.0% |
| GCCTCCGCAGCTTCAGAAAG+AGG | + | chr2_2:5871116-5871135 | None:intergenic | 60.0% | |
| CTGAAGCTGCGGAGGCTCAC+CGG | - | chr2_2:5871120-5871139 | Msa0233530:CDS | 65.0% | |
| !! | TGCGGAGGCTCACCGGCTTA+TGG | - | chr2_2:5871127-5871146 | Msa0233530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5868075 | 5871423 | 5868075 | ID=Msa0233530;Name=Msa0233530 |
| chr2_2 | mRNA | 5868075 | 5871423 | 5868075 | ID=Msa0233530-mRNA-1;Parent=Msa0233530;Name=Msa0233530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=246|0.8|0.66|1|1|1|6|233|347 |
| chr2_2 | exon | 5868075 | 5868504 | 5868075 | ID=Msa0233530-mRNA-1:exon:2562;Parent=Msa0233530-mRNA-1 |
| chr2_2 | exon | 5869400 | 5869558 | 5869400 | ID=Msa0233530-mRNA-1:exon:2561;Parent=Msa0233530-mRNA-1 |
| chr2_2 | exon | 5869705 | 5869840 | 5869705 | ID=Msa0233530-mRNA-1:exon:2560;Parent=Msa0233530-mRNA-1 |
| chr2_2 | exon | 5869911 | 5870030 | 5869911 | ID=Msa0233530-mRNA-1:exon:2559;Parent=Msa0233530-mRNA-1 |
| chr2_2 | exon | 5870227 | 5870406 | 5870227 | ID=Msa0233530-mRNA-1:exon:2558;Parent=Msa0233530-mRNA-1 |
| chr2_2 | exon | 5870926 | 5871423 | 5870926 | ID=Msa0233530-mRNA-1:exon:2557;Parent=Msa0233530-mRNA-1 |
| chr2_2 | five_prime_UTR | 5871178 | 5871423 | 5871178 | ID=Msa0233530-mRNA-1:five_prime_utr;Parent=Msa0233530-mRNA-1 |
| chr2_2 | CDS | 5870926 | 5871177 | 5870926 | ID=Msa0233530-mRNA-1:cds;Parent=Msa0233530-mRNA-1 |
| chr2_2 | CDS | 5870227 | 5870406 | 5870227 | ID=Msa0233530-mRNA-1:cds;Parent=Msa0233530-mRNA-1 |
| chr2_2 | CDS | 5869911 | 5870030 | 5869911 | ID=Msa0233530-mRNA-1:cds;Parent=Msa0233530-mRNA-1 |
| chr2_2 | CDS | 5869705 | 5869840 | 5869705 | ID=Msa0233530-mRNA-1:cds;Parent=Msa0233530-mRNA-1 |
| chr2_2 | CDS | 5869400 | 5869558 | 5869400 | ID=Msa0233530-mRNA-1:cds;Parent=Msa0233530-mRNA-1 |
| chr2_2 | CDS | 5868308 | 5868504 | 5868308 | ID=Msa0233530-mRNA-1:cds;Parent=Msa0233530-mRNA-1 |
| chr2_2 | three_prime_UTR | 5868075 | 5868307 | 5868075 | ID=Msa0233530-mRNA-1:three_prime_utr;Parent=Msa0233530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
