Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735660 | XP_024640378.1 | 87.544 | 281 | 2 | 1 | 1 | 248 | 1 | 281 | 1.77e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735660 | sp|Q8GYR4|QKIL4_ARATH | 59.028 | 288 | 69 | 5 | 1 | 246 | 1 | 281 | 2.47e-109 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735660 | G7K5T8 | 87.544 | 281 | 2 | 1 | 1 | 248 | 1 | 281 | 8.46e-175 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0735660 | 0.818765 | 1.652067e-52 | -8.615850e-47 |
| Msa0011660 | Msa0735660 | -0.833629 | 4.777861e-56 | -8.615850e-47 |
| Msa0037570 | Msa0735660 | -0.811308 | 7.472033e-51 | -8.615850e-47 |
| Msa0044330 | Msa0735660 | 0.808224 | 3.440412e-50 | -8.615850e-47 |
| Msa0071380 | Msa0735660 | -0.838819 | 2.292346e-57 | -8.615850e-47 |
| Msa0105070 | Msa0735660 | 0.804262 | 2.350751e-49 | -8.615850e-47 |
| Msa0610430 | Msa0735660 | 0.803786 | 2.952342e-49 | -8.615850e-47 |
| Msa0613440 | Msa0735660 | 0.802093 | 6.607198e-49 | -8.615850e-47 |
| Msa0638930 | Msa0735660 | -0.805271 | 1.446842e-49 | -8.615850e-47 |
| Msa0661650 | Msa0735660 | 0.821279 | 4.394102e-53 | -8.615850e-47 |
| Msa0663810 | Msa0735660 | 0.808664 | 2.771041e-50 | -8.615850e-47 |
| Msa0664410 | Msa0735660 | 0.811260 | 7.652755e-51 | -8.615850e-47 |
| Msa0679010 | Msa0735660 | 0.823863 | 1.101644e-53 | -8.615850e-47 |
| Msa0679290 | Msa0735660 | -0.819094 | 1.391300e-52 | -8.615850e-47 |
| Msa0681250 | Msa0735660 | 0.817189 | 3.751040e-52 | -8.615850e-47 |
| Msa0681270 | Msa0735660 | 0.810583 | 1.072417e-50 | -8.615850e-47 |
| Msa0691010 | Msa0735660 | 0.817435 | 3.302513e-52 | -8.615850e-47 |
| Msa0701010 | Msa0735660 | 0.838915 | 2.165261e-57 | -8.615850e-47 |
| Msa0731940 | Msa0735660 | 0.807729 | 4.383820e-50 | -8.615850e-47 |
| Msa0735170 | Msa0735660 | 0.808852 | 2.526652e-50 | -8.615850e-47 |
| Msa0735660 | Msa0743720 | 0.800148 | 1.650990e-48 | -8.615850e-47 |
| Msa0735660 | Msa0747270 | 0.842084 | 3.208282e-58 | -8.615850e-47 |
| Msa0735660 | Msa0753720 | 0.842898 | 1.951462e-58 | -8.615850e-47 |
| Msa0735660 | Msa0768370 | 0.812830 | 3.480280e-51 | -8.615850e-47 |
| Msa0735660 | Msa0773540 | 0.815164 | 1.063504e-51 | -8.615850e-47 |
| Msa0735660 | Msa0808080 | 0.816904 | 4.347211e-52 | -8.615850e-47 |
| Msa0735660 | Msa0820840 | 0.811841 | 5.722202e-51 | -8.615850e-47 |
| Msa0735660 | Msa0843260 | 0.811118 | 8.215397e-51 | -8.615850e-47 |
| Msa0735660 | Msa0844490 | 0.812678 | 3.756124e-51 | -8.615850e-47 |
| Msa0735660 | Msa0849030 | 0.820609 | 6.266948e-53 | -8.615850e-47 |
| Msa0735660 | Msa0861120 | 0.807289 | 5.436638e-50 | -8.615850e-47 |
| Msa0735660 | Msa0861130 | 0.801056 | 1.077885e-48 | -8.615850e-47 |
| Msa0735660 | Msa0861540 | 0.804209 | 2.411320e-49 | -8.615850e-47 |
| Msa0735660 | Msa0877250 | 0.824945 | 6.130738e-54 | -8.615850e-47 |
| Msa0735660 | Msa0897330 | 0.829512 | 4.938530e-55 | -8.615850e-47 |
| Msa0735660 | Msa0933100 | 0.806864 | 6.686926e-50 | -8.615850e-47 |
| Msa0735660 | Msa0966750 | 0.820045 | 8.441206e-53 | -8.615850e-47 |
| Msa0735660 | Msa0974070 | 0.801837 | 7.457600e-49 | -8.615850e-47 |
| Msa0735660 | Msa0974080 | 0.810602 | 1.062540e-50 | -8.615850e-47 |
| Msa0735660 | Msa0974440 | 0.804266 | 2.345846e-49 | -8.615850e-47 |
| Msa0735660 | Msa0976670 | 0.808628 | 2.820885e-50 | -8.615850e-47 |
| Msa0735660 | Msa0999120 | 0.822644 | 2.121597e-53 | -8.615850e-47 |
| Msa0735660 | Msa1000860 | 0.805454 | 1.324821e-49 | -8.615850e-47 |
| Msa0735660 | Msa1000880 | 0.803483 | 3.412698e-49 | -8.615850e-47 |
| Msa0735660 | Msa1000890 | 0.835074 | 2.073704e-56 | -8.615850e-47 |
| Msa0735660 | Msa1000900 | 0.841407 | 4.841702e-58 | -8.615850e-47 |
| Msa0735660 | Msa1003620 | 0.824955 | 6.098630e-54 | -8.615850e-47 |
| Msa0735660 | Msa1004390 | 0.823054 | 1.702540e-53 | -8.615850e-47 |
| Msa0735660 | Msa1014540 | 0.839567 | 1.466634e-57 | -8.615850e-47 |
| Msa0735660 | Msa1016320 | 0.806869 | 6.671681e-50 | -8.615850e-47 |
| Msa0735660 | Msa1030970 | 0.814352 | 1.609390e-51 | -8.615850e-47 |
| Msa0735660 | Msa1036610 | 0.824844 | 6.476757e-54 | -8.615850e-47 |
| Msa0735660 | Msa1036710 | -0.807417 | 5.105963e-50 | -8.615850e-47 |
| Msa0735660 | Msa1046460 | 0.808919 | 2.444582e-50 | -8.615850e-47 |
| Msa0735660 | Msa1075220 | -0.809532 | 1.806240e-50 | -8.615850e-47 |
| Msa0735660 | Msa1075540 | 0.814602 | 1.416889e-51 | -8.615850e-47 |
| Msa0735660 | Msa1083840 | 0.813396 | 2.614591e-51 | -8.615850e-47 |
| Msa0735660 | Msa1100050 | 0.843333 | 1.494181e-58 | -8.615850e-47 |
| Msa0735660 | Msa1113170 | 0.825343 | 4.935243e-54 | -8.615850e-47 |
| Msa0735660 | Msa1121490 | 0.820558 | 6.437661e-53 | -8.615850e-47 |
| Msa0735660 | Msa1135470 | 0.804772 | 1.839915e-49 | -8.615850e-47 |
| Msa0735660 | Msa1137570 | 0.808037 | 3.771419e-50 | -8.615850e-47 |
| Msa0735660 | Msa1162550 | -0.808147 | 3.572633e-50 | -8.615850e-47 |
| Msa0735660 | Msa1174040 | 0.806230 | 9.098863e-50 | -8.615850e-47 |
| Msa0735660 | Msa1174910 | 0.805855 | 1.091036e-49 | -8.615850e-47 |
| Msa0735660 | Msa1232740 | 0.822959 | 1.791746e-53 | -8.615850e-47 |
| Msa0735660 | Msa1236430 | 0.825200 | 5.337806e-54 | -8.615850e-47 |
| Msa0735660 | Msa1238930 | 0.808834 | 2.549470e-50 | -8.615850e-47 |
| Msa0735660 | Msa1276890 | 0.830687 | 2.551666e-55 | -8.615850e-47 |
| Msa0735660 | Msa1277660 | 0.844005 | 9.877627e-59 | -8.615850e-47 |
| Msa0735660 | Msa1278870 | 0.805803 | 1.118935e-49 | -8.615850e-47 |
| Msa0735660 | Msa1284680 | 0.833934 | 4.010111e-56 | -8.615850e-47 |
| Msa0735660 | Msa1286760 | 0.801764 | 7.720026e-49 | -8.615850e-47 |
| Msa0735660 | Msa1286800 | 0.813982 | 1.942796e-51 | -8.615850e-47 |
| Msa0735660 | Msa1313320 | 0.817345 | 3.460714e-52 | -8.615850e-47 |
| Msa0735660 | Msa1353470 | 0.809181 | 2.148532e-50 | -8.615850e-47 |
| Msa0735660 | Msa1366810 | 0.806349 | 8.588724e-50 | -8.615850e-47 |
| Msa0735660 | Msa1388510 | 0.805295 | 1.430443e-49 | -8.615850e-47 |
| Msa0735660 | Msa1404520 | 0.800774 | 1.230604e-48 | -8.615850e-47 |
| Msa0735660 | Msa1409880 | 0.813972 | 1.952825e-51 | -8.615850e-47 |
| Msa0735660 | Msa1446250 | 0.806095 | 9.713541e-50 | -8.615850e-47 |
| Msa0139180 | Msa0735660 | 0.816906 | 4.343751e-52 | -8.615850e-47 |
| Msa0178930 | Msa0735660 | 0.812799 | 3.534585e-51 | -8.615850e-47 |
| Msa0180500 | Msa0735660 | 0.801371 | 9.295012e-49 | -8.615850e-47 |
| Msa0198910 | Msa0735660 | 0.803221 | 3.866130e-49 | -8.615850e-47 |
| Msa0233530 | Msa0735660 | 0.843129 | 1.694168e-58 | -8.615850e-47 |
| Msa0233540 | Msa0735660 | 0.805137 | 1.543085e-49 | -8.615850e-47 |
| Msa0372340 | Msa0735660 | 0.802123 | 6.512853e-49 | -8.615850e-47 |
| Msa0397750 | Msa0735660 | 0.813735 | 2.202236e-51 | -8.615850e-47 |
| Msa0416650 | Msa0735660 | 0.808569 | 2.903580e-50 | -8.615850e-47 |
| Msa0423760 | Msa0735660 | 0.800204 | 1.608655e-48 | -8.615850e-47 |
| Msa0424320 | Msa0735660 | 0.835633 | 1.497636e-56 | -8.615850e-47 |
| Msa0430420 | Msa0735660 | 0.800591 | 1.341156e-48 | -8.615850e-47 |
| Msa0440400 | Msa0735660 | 0.802598 | 5.199641e-49 | -8.615850e-47 |
| Msa0444750 | Msa0735660 | -0.807875 | 4.082472e-50 | -8.615850e-47 |
| Msa0464100 | Msa0735660 | 0.821022 | 5.035888e-53 | -8.615850e-47 |
| Msa0466120 | Msa0735660 | 0.808298 | 3.318025e-50 | -8.615850e-47 |
| Msa0251640 | Msa0735660 | 0.803641 | 3.163907e-49 | -8.615850e-47 |
| Msa0285450 | Msa0735660 | 0.822443 | 2.361990e-53 | -8.615850e-47 |
| Msa0305190 | Msa0735660 | 0.805472 | 1.312896e-49 | -8.615850e-47 |
| Msa0317520 | Msa0735660 | 0.839185 | 1.843261e-57 | -8.615850e-47 |
| Msa0321310 | Msa0735660 | 0.815180 | 1.055155e-51 | -8.615850e-47 |
| Msa0359030 | Msa0735660 | 0.830824 | 2.362768e-55 | -8.615850e-47 |
| Msa0512750 | Msa0735660 | 0.851295 | 9.740125e-61 | -8.615850e-47 |
| Msa0518380 | Msa0735660 | 0.809164 | 2.166279e-50 | -8.615850e-47 |
| Msa0523940 | Msa0735660 | 0.832317 | 1.012827e-55 | -8.615850e-47 |
| Msa0529040 | Msa0735660 | 0.828291 | 9.755587e-55 | -8.615850e-47 |
| Msa0542480 | Msa0735660 | 0.809225 | 2.102567e-50 | -8.615850e-47 |
| Msa0545700 | Msa0735660 | 0.802006 | 6.885594e-49 | -8.615850e-47 |
| Msa0547320 | Msa0735660 | 0.821143 | 4.722880e-53 | -8.615850e-47 |
| Msa0554050 | Msa0735660 | 0.837459 | 5.134886e-57 | -8.615850e-47 |
| Msa0569220 | Msa0735660 | 0.806947 | 6.422279e-50 | -8.615850e-47 |
| Msa0598780 | Msa0735660 | 0.800904 | 1.157695e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735660 | MtrunA17_Chr5g0432901 | 87.544 | 281 | 2 | 1 | 1 | 248 | 1 | 281 | 1.63e-178 | 491 |
| Msa0735660 | MtrunA17_Chr3g0108401 | 72.243 | 263 | 34 | 3 | 24 | 248 | 1 | 262 | 6.65e-132 | 372 |
| Msa0735660 | MtrunA17_Chr8g0334451 | 64.260 | 277 | 59 | 5 | 3 | 246 | 5 | 274 | 1.01e-114 | 330 |
| Msa0735660 | MtrunA17_Chr7g0245301 | 62.369 | 287 | 57 | 5 | 1 | 245 | 1 | 278 | 2.36e-114 | 329 |
| Msa0735660 | MtrunA17_Chr3g0080071 | 51.273 | 275 | 93 | 4 | 10 | 246 | 20 | 291 | 4.53e-86 | 258 |
| Msa0735660 | MtrunA17_Chr2g0276961 | 49.057 | 265 | 88 | 5 | 28 | 246 | 47 | 310 | 5.17e-68 | 212 |
| Msa0735660 | MtrunA17_Chr4g0018581 | 44.800 | 125 | 59 | 4 | 102 | 224 | 217 | 333 | 7.84e-25 | 102 |
| Msa0735660 | MtrunA17_Chr7g0267531 | 62.121 | 66 | 15 | 2 | 80 | 139 | 20 | 81 | 6.70e-19 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735660 | AT3G08620.1 | 59.028 | 288 | 69 | 5 | 1 | 246 | 1 | 281 | 2.51e-110 | 319 |
| Msa0735660 | AT2G38610.2 | 59.794 | 291 | 65 | 7 | 1 | 246 | 1 | 284 | 3.66e-106 | 308 |
| Msa0735660 | AT2G38610.1 | 59.794 | 291 | 65 | 7 | 1 | 246 | 1 | 284 | 3.66e-106 | 308 |
| Msa0735660 | AT3G08620.2 | 59.167 | 240 | 52 | 3 | 49 | 246 | 1 | 236 | 1.86e-92 | 272 |
| Msa0735660 | AT5G56140.1 | 50.177 | 283 | 98 | 7 | 5 | 246 | 32 | 312 | 3.93e-85 | 256 |
| Msa0735660 | AT4G26480.3 | 49.822 | 281 | 100 | 7 | 5 | 246 | 28 | 306 | 5.26e-83 | 251 |
| Msa0735660 | AT4G26480.1 | 49.822 | 281 | 100 | 7 | 5 | 246 | 28 | 306 | 5.26e-83 | 251 |
| Msa0735660 | AT1G09660.1 | 50.388 | 258 | 81 | 4 | 33 | 247 | 44 | 297 | 4.38e-78 | 238 |
| Msa0735660 | AT1G09660.3 | 50.388 | 258 | 81 | 4 | 33 | 247 | 44 | 297 | 4.38e-78 | 238 |
| Msa0735660 | AT4G26480.2 | 64.417 | 163 | 57 | 1 | 84 | 246 | 60 | 221 | 6.67e-74 | 224 |
| Msa0735660 | AT1G09660.2 | 48.309 | 207 | 70 | 2 | 33 | 202 | 44 | 250 | 1.44e-59 | 189 |
| Msa0735660 | AT5G51300.1 | 44.800 | 125 | 59 | 3 | 102 | 224 | 244 | 360 | 4.01e-24 | 101 |
| Msa0735660 | AT5G51300.2 | 44.800 | 125 | 59 | 3 | 102 | 224 | 244 | 360 | 4.01e-24 | 101 |
| Msa0735660 | AT5G51300.3 | 44.800 | 125 | 59 | 3 | 102 | 224 | 244 | 360 | 4.01e-24 | 101 |
Find 72 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAATGTTGTTGATTTA+AGG | 0.084192 | 5_1:-51118213 | Msa0735660:CDS |
| AACTTTGTTGGGAGGCTTCT+TGG | 0.164659 | 5_1:-51118723 | Msa0735660:CDS |
| TTGCTTCTCATGTTTATATT+TGG | 0.166777 | 5_1:+51120280 | None:intergenic |
| ATAGAGAGAGACACACTTTA+AGG | 0.180017 | 5_1:-51120619 | Msa0735660:five_prime_UTR |
| GTGATTCTATGTTTCTTAAC+AGG | 0.262166 | 5_1:-51120475 | Msa0735660:five_prime_UTR |
| GAAAGACTATTGGTCAGTTT+TGG | 0.283012 | 5_1:+51117383 | None:intergenic |
| TTGATGATATGATGCCAATT+TGG | 0.325161 | 5_1:-51117282 | Msa0735660:three_prime_UTR |
| GAATTAGCCCTTGCTGTTCC+TGG | 0.348426 | 5_1:+51120304 | None:intergenic |
| TACTAATCTACTTACATATA+AGG | 0.350855 | 5_1:-51120584 | Msa0735660:five_prime_UTR |
| TTGGGAGGCTTCTTGGCCCA+AGG | 0.368655 | 5_1:-51118716 | Msa0735660:CDS |
| CGCTTCAGTGAATTACCCCT+TGG | 0.391185 | 5_1:+51118699 | None:intergenic |
| ATTTAAGAGTCTAGTGCATA+AGG | 0.401174 | 5_1:+51119892 | None:intergenic |
| ATCATTTCATTAGAAGTGAA+TGG | 0.426076 | 5_1:+51117414 | None:intergenic |
| TTAATGTAGAGAAAGACTAT+TGG | 0.433629 | 5_1:+51117373 | None:intergenic |
| TGGGAGGCTTCTTGGCCCAA+GGG | 0.460083 | 5_1:-51118715 | Msa0735660:CDS |
| TCATTCAAGTGCTCAAATCC+TGG | 0.465607 | 5_1:+51118268 | None:intergenic |
| TGCACTAGACTCTTAAATCA+AGG | 0.470726 | 5_1:-51119887 | Msa0735660:intron |
| CTACCAACTCAGTTAAGTAT+TGG | 0.476363 | 5_1:+51119954 | None:intergenic |
| TCAAATATCTTACAGTTGGA+TGG | 0.482767 | 5_1:+51118926 | None:intergenic |
| CGCGTATTTATCAGAGGGAA+AGG | 0.484216 | 5_1:-51118654 | Msa0735660:CDS |
| TTCAATAAAAGACTTCGATA+AGG | 0.496581 | 5_1:-51118631 | Msa0735660:intron |
| TTCAGTTCAACTTTGTTGGG+AGG | 0.499629 | 5_1:-51118731 | Msa0735660:intron |
| CTTAAATCAACAACATTGAC+AGG | 0.499752 | 5_1:+51118214 | None:intergenic |
| TTTAAGAGTCTAGTGCATAA+GGG | 0.500486 | 5_1:+51119893 | None:intergenic |
| GAGTTGCTGAGGGGAAGGCC+AGG | 0.515410 | 5_1:-51118286 | Msa0735660:CDS |
| AAGCGAGTGGAGGCTACTAC+TGG | 0.523243 | 5_1:-51118681 | Msa0735660:CDS |
| ATTGATAAAAGAGAAGGTAG+TGG | 0.525553 | 5_1:+51120517 | None:intergenic |
| AAGGTAGTGGATGAAAAGAA+AGG | 0.533639 | 5_1:+51120530 | None:intergenic |
| ATCAGGGGCTAAATGTGGAT+TGG | 0.537326 | 5_1:-51119020 | Msa0735660:intron |
| TAGGCTTGACACTAAACCCT+TGG | 0.537437 | 5_1:+51119462 | None:intergenic |
| AGAGACTACCACTCAGTTGA+GGG | 0.537841 | 5_1:+51117439 | None:intergenic |
| AGAGTATATAGAAAATTCAA+AGG | 0.538811 | 5_1:+51120399 | None:intergenic |
| AGGAAGAGTTGCTGAGGGGA+AGG | 0.539626 | 5_1:-51118291 | Msa0735660:CDS |
| AAGGGTAAGACTTGCATGAA+AGG | 0.543152 | 5_1:+51119911 | None:intergenic |
| GTAGCAGAATATCAGAAGCT+TGG | 0.544343 | 5_1:-51119935 | Msa0735660:CDS |
| TTAAGGGCTTCTGGAAAGAG+TGG | 0.550881 | 5_1:-51119497 | Msa0735660:CDS |
| GCCAATTTGGAGAAAAGAGA+AGG | 0.552516 | 5_1:-51117269 | Msa0735660:three_prime_UTR |
| TGTGAAGAAGATGTTGCGCT+TGG | 0.554183 | 5_1:-51118965 | Msa0735660:CDS |
| GAGAGACTACCACTCAGTTG+AGG | 0.557783 | 5_1:+51117438 | None:intergenic |
| GAGTATATAGAAAATTCAAA+GGG | 0.563198 | 5_1:+51120400 | None:intergenic |
| TAGCCAATACTTAACTGAGT+TGG | 0.564535 | 5_1:-51119957 | Msa0735660:CDS |
| GCTTCAGTGAATTACCCCTT+GGG | 0.565879 | 5_1:+51118700 | None:intergenic |
| ATCTAAAGGAAGAGTTGCTG+AGG | 0.572490 | 5_1:-51118297 | Msa0735660:intron |
| AGAAAAGATGTCTGATAACA+AGG | 0.574895 | 5_1:+51120436 | None:intergenic |
| CTTACATCAGGGGCTAAATG+TGG | 0.578036 | 5_1:-51119025 | Msa0735660:intron |
| AGCCCTTGCTGTTCCTGGTG+AGG | 0.578872 | 5_1:+51120309 | None:intergenic |
| CCAATTTGGAGAAAAGAGAA+GGG | 0.578915 | 5_1:-51117268 | Msa0735660:three_prime_UTR |
| GGGAGGCTTCTTGGCCCAAG+GGG | 0.580940 | 5_1:-51118714 | Msa0735660:CDS |
| ATGTGAGAATTTGAGACTGC+TGG | 0.585989 | 5_1:+51118988 | None:intergenic |
| AAAATAGAAATATAGATAGA+GGG | 0.586267 | 5_1:+51120558 | None:intergenic |
| GTGGATTGATGCAGAACCAA+GGG | 0.591733 | 5_1:-51119478 | Msa0735660:CDS |
| GATGTCTGATAACAAGGGTG+TGG | 0.598881 | 5_1:+51120442 | None:intergenic |
| TGTTTGATTGATAAAAGAGA+AGG | 0.603229 | 5_1:+51120511 | None:intergenic |
| TCTAAAGGAAGAGTTGCTGA+GGG | 0.609826 | 5_1:-51118296 | Msa0735660:intron |
| ACAGTTGGATGGTTATCATG+AGG | 0.620762 | 5_1:+51118937 | None:intergenic |
| TTTCCTCACCAGGAACAGCA+AGG | 0.622680 | 5_1:-51120312 | Msa0735660:CDS |
| TTCCTCACCAGGAACAGCAA+GGG | 0.622720 | 5_1:-51120311 | Msa0735660:CDS |
| GGTTGCCGCGTATTTATCAG+AGG | 0.624864 | 5_1:-51118660 | Msa0735660:CDS |
| AGTGGATTGATGCAGAACCA+AGG | 0.632569 | 5_1:-51119479 | Msa0735660:CDS |
| GCCTCAATCAAAATGTGCAG+TGG | 0.633269 | 5_1:+51118244 | None:intergenic |
| AACAATCAGATTTCCTCACC+AGG | 0.634098 | 5_1:-51120322 | Msa0735660:CDS |
| GAAAAGATGTCTGATAACAA+GGG | 0.636765 | 5_1:+51120437 | None:intergenic |
| GTTGCCGCGTATTTATCAGA+GGG | 0.638626 | 5_1:-51118659 | Msa0735660:CDS |
| GGGTAATTCACTGAAGCGAG+TGG | 0.641463 | 5_1:-51118694 | Msa0735660:CDS |
| TAATCTACTTACATATAAGG+TGG | 0.649861 | 5_1:-51120581 | Msa0735660:five_prime_UTR |
| CAATTTGGAGAAAAGAGAAG+GGG | 0.660930 | 5_1:-51117267 | Msa0735660:three_prime_UTR |
| CTTTCCCTCTGATAAATACG+CGG | 0.666101 | 5_1:+51118655 | None:intergenic |
| TAATTCACTGAAGCGAGTGG+AGG | 0.668465 | 5_1:-51118691 | Msa0735660:CDS |
| GAAGAGAGCCCTCAACTGAG+TGG | 0.669611 | 5_1:-51117447 | Msa0735660:CDS |
| AATCACAGGACATTTACAAG+AGG | 0.674753 | 5_1:-51117512 | Msa0735660:CDS |
| AGAAGAACTACTCAAACCTG+TGG | 0.712872 | 5_1:-51118167 | Msa0735660:intron |
| CTAAAGGAAGAGTTGCTGAG+GGG | 0.733546 | 5_1:-51118295 | Msa0735660:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCCATATATTAAATTT+TGG | - | chr5_1:51117853-51117872 | Msa0735660:intron | 10.0% |
| !!! | ATTTTATAATTTTTTTCCAA+TGG | + | chr5_1:51118490-51118509 | None:intergenic | 10.0% |
| !! | AAAATAGAAATATAGATAGA+GGG | + | chr5_1:51117152-51117171 | None:intergenic | 15.0% |
| !! | AAAAATAGAAATATAGATAG+AGG | + | chr5_1:51117153-51117172 | None:intergenic | 15.0% |
| !!! | CATATACATATAACTATTTT+TGG | + | chr5_1:51117678-51117697 | None:intergenic | 15.0% |
| !! | CAAAACCAAAATTTAATATA+TGG | + | chr5_1:51117861-51117880 | None:intergenic | 15.0% |
| !! | TCTGTCAAATATATATATAT+GGG | + | chr5_1:51118053-51118072 | None:intergenic | 15.0% |
| !! | TTCTGTCAAATATATATATA+TGG | + | chr5_1:51118054-51118073 | None:intergenic | 15.0% |
| !!! | CATATTTAACAATTTTTAGT+TGG | - | chr5_1:51118127-51118146 | Msa0735660:intron | 15.0% |
| !! | TAGCAAATTTAATGATTAAA+GGG | + | chr5_1:51118646-51118665 | None:intergenic | 15.0% |
| !! | TTAGCAAATTTAATGATTAA+AGG | + | chr5_1:51118647-51118666 | None:intergenic | 15.0% |
| !!! | CAAATTAGATTTTATTTAGT+TGG | + | chr5_1:51119135-51119154 | None:intergenic | 15.0% |
| !!! | TACTTTTATTATATTTTGAC+AGG | - | chr5_1:51120544-51120563 | Msa0735660:five_prime_UTR | 15.0% |
| !! | TACTAATCTACTTACATATA+AGG | - | chr5_1:51117123-51117142 | Msa0735660:three_prime_UTR | 20.0% |
| !! | GAGTATATAGAAAATTCAAA+GGG | + | chr5_1:51117310-51117329 | None:intergenic | 20.0% |
| !! | AGAGTATATAGAAAATTCAA+AGG | + | chr5_1:51117311-51117330 | None:intergenic | 20.0% |
| !! | CAACACAAAACAAAAAAAAA+AGG | + | chr5_1:51117345-51117364 | None:intergenic | 20.0% |
| !!! | TGATGAGTTTAATTAACTTT+TGG | - | chr5_1:51117701-51117720 | Msa0735660:intron | 20.0% |
| !! | GATTCAAGTAAAATAAAAAG+TGG | + | chr5_1:51117902-51117921 | None:intergenic | 20.0% |
| !!! | CTTTTTATTTTACTTGAATC+AGG | - | chr5_1:51117902-51117921 | Msa0735660:intron | 20.0% |
| !!! | TCTCATTTTTTTATGTTATG+AGG | - | chr5_1:51117966-51117985 | Msa0735660:intron | 20.0% |
| !!! | TTTATTACCAGAGATTTTAA+GGG | - | chr5_1:51118194-51118213 | Msa0735660:CDS | 20.0% |
| !!! | ACACCTTTAATTTGAATTAA+AGG | - | chr5_1:51118444-51118463 | Msa0735660:intron | 20.0% |
| !! | ACACCTTTAATTCAAATTAA+AGG | + | chr5_1:51118450-51118469 | None:intergenic | 20.0% |
| !!! | ACATTTTAATGTTAAACCAT+TGG | - | chr5_1:51118471-51118490 | Msa0735660:intron | 20.0% |
| !! | TGAATGAAAATGAAATAGAA+GGG | + | chr5_1:51118601-51118620 | None:intergenic | 20.0% |
| !! | ATGAATGAAAATGAAATAGA+AGG | + | chr5_1:51118602-51118621 | None:intergenic | 20.0% |
| !! | GATGTATGATCATATTAAAA+TGG | + | chr5_1:51118821-51118840 | None:intergenic | 20.0% |
| !! | TAATATGATGATATGATGAA+TGG | - | chr5_1:51119215-51119234 | Msa0735660:intron | 20.0% |
| !!! | ATTTTAAAACCGAATTTGTA+AGG | - | chr5_1:51119273-51119292 | Msa0735660:intron | 20.0% |
| !! | CCTTTAGATTATAACAAAAT+AGG | + | chr5_1:51119399-51119418 | None:intergenic | 20.0% |
| !!! | CCTATTTTGTTATAATCTAA+AGG | - | chr5_1:51119396-51119415 | Msa0735660:intron | 20.0% |
| !! | TTGAAAAATATAAATACCAC+AGG | + | chr5_1:51119559-51119578 | None:intergenic | 20.0% |
| !!! | TATAATATGCATTTTATGCA+AGG | - | chr5_1:51119647-51119666 | Msa0735660:intron | 20.0% |
| !!! | TATAATATGCATTTTATGCA+AGG | - | chr5_1:51119647-51119666 | Msa0735660:intron | 20.0% |
| !!! | ATATTTTGACTTCACAAAAT+CGG | - | chr5_1:51119884-51119903 | Msa0735660:intron | 20.0% |
| !! | ATATAGTCAAGATATCAATA+CGG | - | chr5_1:51120079-51120098 | Msa0735660:intron | 20.0% |
| ! | TAATCTACTTACATATAAGG+TGG | - | chr5_1:51117126-51117145 | Msa0735660:three_prime_UTR | 25.0% |
| ! | TGTTTGATTGATAAAAGAGA+AGG | + | chr5_1:51117199-51117218 | None:intergenic | 25.0% |
| ! | TTGCTTCTCATGTTTATATT+TGG | + | chr5_1:51117430-51117449 | None:intergenic | 25.0% |
| !! | ACTGAGTTTTCTTAATAACT+TGG | - | chr5_1:51117936-51117955 | Msa0735660:intron | 25.0% |
| !! | CTTTATTACCAGAGATTTTA+AGG | - | chr5_1:51118193-51118212 | Msa0735660:CDS | 25.0% |
| ! | GAATGAAAATGAAATAGAAG+GGG | + | chr5_1:51118600-51118619 | None:intergenic | 25.0% |
| ! | TGTTTCAAATATCTTACAGT+TGG | + | chr5_1:51118788-51118807 | None:intergenic | 25.0% |
| ! | TTTATTTAGGAATTCACATG+AGG | - | chr5_1:51118942-51118961 | Msa0735660:CDS | 25.0% |
| !! | TATTTTCAGTTCAACTTTGT+TGG | - | chr5_1:51118972-51118991 | Msa0735660:CDS | 25.0% |
| !! | ATTTTCAGTTCAACTTTGTT+GGG | - | chr5_1:51118973-51118992 | Msa0735660:CDS | 25.0% |
| ! | TTCAATAAAAGACTTCGATA+AGG | - | chr5_1:51119076-51119095 | Msa0735660:intron | 25.0% |
| ! | AACAAACACAAATCAAAAGA+AGG | + | chr5_1:51119331-51119350 | None:intergenic | 25.0% |
| ! | TTATAATGAACAATGTGTCA+AGG | + | chr5_1:51119632-51119651 | None:intergenic | 25.0% |
| ! | TTATAATGAACAATGTGTCA+AGG | + | chr5_1:51119632-51119651 | None:intergenic | 25.0% |
| ! | CCTGCATAAAAGAATAATAA+AGG | + | chr5_1:51120172-51120191 | None:intergenic | 25.0% |
| !! | CCTTTATTATTCTTTTATGC+AGG | - | chr5_1:51120169-51120188 | Msa0735660:intron | 25.0% |
| ! | ATCATTTCATTAGAAGTGAA+TGG | + | chr5_1:51120296-51120315 | None:intergenic | 25.0% |
| ! | TTAATGTAGAGAAAGACTAT+TGG | + | chr5_1:51120337-51120356 | None:intergenic | 25.0% |
| !!! | TATTTTGACAGGTTTGTTAA+TGG | - | chr5_1:51120555-51120574 | Msa0735660:five_prime_UTR | 25.0% |
| ATTGATAAAAGAGAAGGTAG+TGG | + | chr5_1:51117193-51117212 | None:intergenic | 30.0% | |
| GTGATTCTATGTTTCTTAAC+AGG | - | chr5_1:51117232-51117251 | Msa0735660:three_prime_UTR | 30.0% | |
| ! | GTTTCTTAACAGGATTTTTG+AGG | - | chr5_1:51117242-51117261 | Msa0735660:three_prime_UTR | 30.0% |
| GAAAAGATGTCTGATAACAA+GGG | + | chr5_1:51117273-51117292 | None:intergenic | 30.0% | |
| AGAAAAGATGTCTGATAACA+AGG | + | chr5_1:51117274-51117293 | None:intergenic | 30.0% | |
| ! | TTTTGTGTTGAATTGATGTC+TGG | - | chr5_1:51117355-51117374 | Msa0735660:three_prime_UTR | 30.0% |
| GGTTAAGTCGAATTTATTGT+CGG | - | chr5_1:51117594-51117613 | Msa0735660:intron | 30.0% | |
| TTTAAGAGTCTAGTGCATAA+GGG | + | chr5_1:51117817-51117836 | None:intergenic | 30.0% | |
| ATTTAAGAGTCTAGTGCATA+AGG | + | chr5_1:51117818-51117837 | None:intergenic | 30.0% | |
| TATACGAACAGACATAAAGT+TGG | + | chr5_1:51118160-51118179 | None:intergenic | 30.0% | |
| ! | ATTCAAATTAAAGGTGTGTC+TGG | + | chr5_1:51118441-51118460 | None:intergenic | 30.0% |
| TTACAAAAAATGCAGACCAA+GGG | + | chr5_1:51118528-51118547 | None:intergenic | 30.0% | |
| TTTACAAAAAATGCAGACCA+AGG | + | chr5_1:51118529-51118548 | None:intergenic | 30.0% | |
| ATGAAATAGAAGGGGAATAT+TGG | + | chr5_1:51118592-51118611 | None:intergenic | 30.0% | |
| ATTAAGTCCAATCTTACATC+AGG | - | chr5_1:51118670-51118689 | Msa0735660:CDS | 30.0% | |
| TTAAGTCCAATCTTACATCA+GGG | - | chr5_1:51118671-51118690 | Msa0735660:CDS | 30.0% | |
| TCAAATATCTTACAGTTGGA+TGG | + | chr5_1:51118784-51118803 | None:intergenic | 30.0% | |
| !!! | CTCTCACGCTTATTTTATTT+AGG | - | chr5_1:51118929-51118948 | Msa0735660:intron | 30.0% |
| !!! | TTTTATTTTCTCTCCCTTAG+TGG | - | chr5_1:51119101-51119120 | Msa0735660:intron | 30.0% |
| TTAAAACCGAATTTGTAAGG+TGG | - | chr5_1:51119276-51119295 | Msa0735660:intron | 30.0% | |
| CTTAAATCAACAACATTGAC+AGG | + | chr5_1:51119496-51119515 | None:intergenic | 30.0% | |
| !! | CTGTCAATGTTGTTGATTTA+AGG | - | chr5_1:51119494-51119513 | Msa0735660:CDS | 30.0% |
| ! | GTTTTCCTTTTCGAAATTAG+AGG | - | chr5_1:51119686-51119705 | Msa0735660:intron | 30.0% |
| ! | GTTTTCCTTTTCGAAATTAG+AGG | - | chr5_1:51119686-51119705 | Msa0735660:intron | 30.0% |
| ! | GGTTGTAAAATGTTTTACAC+CGG | - | chr5_1:51120100-51120119 | Msa0735660:intron | 30.0% |
| ! | TTGATGATATGATGCCAATT+TGG | - | chr5_1:51120425-51120444 | Msa0735660:five_prime_UTR | 30.0% |
| ATAGAGAGAGACACACTTTA+AGG | - | chr5_1:51117088-51117107 | Msa0735660:three_prime_UTR | 35.0% | |
| !! | AAGGTAGTGGATGAAAAGAA+AGG | + | chr5_1:51117180-51117199 | None:intergenic | 35.0% |
| !! | GAAGCAATTTTGATGCTGAT+AGG | - | chr5_1:51117443-51117462 | Msa0735660:CDS | 35.0% |
| ACCAAGCAATTGAACTCAAA+TGG | - | chr5_1:51117573-51117592 | Msa0735660:intron | 35.0% | |
| ! | ACCATTTGAGTTCAATTGCT+TGG | + | chr5_1:51117577-51117596 | None:intergenic | 35.0% |
| AGAAGATGACTCTAGTATTC+CGG | + | chr5_1:51117635-51117654 | None:intergenic | 35.0% | |
| TAGCCAATACTTAACTGAGT+TGG | - | chr5_1:51117750-51117769 | Msa0735660:intron | 35.0% | |
| CTACCAACTCAGTTAAGTAT+TGG | + | chr5_1:51117756-51117775 | None:intergenic | 35.0% | |
| TGCACTAGACTCTTAAATCA+AGG | - | chr5_1:51117820-51117839 | Msa0735660:intron | 35.0% | |
| CTAGACTCTTAAATCAAGGT+TGG | - | chr5_1:51117824-51117843 | Msa0735660:intron | 35.0% | |
| ! | TCTAAAGAAGGCATAAGACT+AGG | + | chr5_1:51118267-51118286 | None:intergenic | 35.0% |
| CTTGATGTAGTGTCTAAAGA+AGG | + | chr5_1:51118279-51118298 | None:intergenic | 35.0% | |
| GAATGTAATCGTGTTAGTGT+CGG | - | chr5_1:51118405-51118424 | Msa0735660:intron | 35.0% | |
| TAATATCTGATCTGATCCCT+TGG | - | chr5_1:51118509-51118528 | Msa0735660:intron | 35.0% | |
| GGTAGCGATAACAATATAAG+TGG | + | chr5_1:51118625-51118644 | None:intergenic | 35.0% | |
| TAAGTCCAATCTTACATCAG+GGG | - | chr5_1:51118672-51118691 | Msa0735660:CDS | 35.0% | |
| GTTGGAAAACAATCCACTAA+GGG | + | chr5_1:51119117-51119136 | None:intergenic | 35.0% | |
| AGTTGGAAAACAATCCACTA+AGG | + | chr5_1:51119118-51119137 | None:intergenic | 35.0% | |
| ACGTTCAACAATGTTGAACT+TGG | - | chr5_1:51119184-51119203 | Msa0735660:intron | 35.0% | |
| TGGTCTAAATTGATAGACTC+TGG | - | chr5_1:51119235-51119254 | Msa0735660:intron | 35.0% | |
| TCACTTCCACCTTACAAATT+CGG | + | chr5_1:51119285-51119304 | None:intergenic | 35.0% | |
| GAAAAGGAAAACAGCGTATT+CGG | + | chr5_1:51119678-51119697 | None:intergenic | 35.0% | |
| CAAGTCCTCTAATTTCGAAA+AGG | + | chr5_1:51119694-51119713 | None:intergenic | 35.0% | |
| ! | CTTTTCGAAATTAGAGGACT+TGG | - | chr5_1:51119692-51119711 | Msa0735660:intron | 35.0% |
| GAAAAGGAAAACAGCGTATT+CGG | + | chr5_1:51119678-51119697 | None:intergenic | 35.0% | |
| CAAGTCCTCTAATTTCGAAA+AGG | + | chr5_1:51119694-51119713 | None:intergenic | 35.0% | |
| ! | CTTTTCGAAATTAGAGGACT+TGG | - | chr5_1:51119692-51119711 | Msa0735660:intron | 35.0% |
| AGTCATGTAGTTGTTGATCT+CGG | + | chr5_1:51119958-51119977 | None:intergenic | 35.0% | |
| TCAACAACTACATGACTATG+TGG | - | chr5_1:51119961-51119980 | Msa0735660:intron | 35.0% | |
| GAGAATCCAATTCCTCTAAA+TGG | - | chr5_1:51119989-51120008 | Msa0735660:intron | 35.0% | |
| ! | ACAACGAGTTTTTCTGTAAC+AGG | + | chr5_1:51120018-51120037 | None:intergenic | 35.0% |
| ! | TTTTATGCAGGATGAATCAC+AGG | - | chr5_1:51120181-51120200 | Msa0735660:intron | 35.0% |
| AATCACAGGACATTTACAAG+AGG | - | chr5_1:51120195-51120214 | Msa0735660:intron | 35.0% | |
| ! | GAAAGACTATTGGTCAGTTT+TGG | + | chr5_1:51120327-51120346 | None:intergenic | 35.0% |
| CCAATTTGGAGAAAAGAGAA+GGG | - | chr5_1:51120439-51120458 | Msa0735660:five_prime_UTR | 35.0% | |
| CAATTTGGAGAAAAGAGAAG+GGG | - | chr5_1:51120440-51120459 | Msa0735660:five_prime_UTR | 35.0% | |
| AACAATCAGATTTCCTCACC+AGG | - | chr5_1:51117385-51117404 | Msa0735660:exon | 40.0% | |
| GTAGCAGAATATCAGAAGCT+TGG | - | chr5_1:51117772-51117791 | Msa0735660:intron | 40.0% | |
| AAGGGTAAGACTTGCATGAA+AGG | + | chr5_1:51117799-51117818 | None:intergenic | 40.0% | |
| GACACTACATCAAGTTTCAC+AGG | - | chr5_1:51118285-51118304 | Msa0735660:CDS | 40.0% | |
| CTACATCAAGTTTCACAGGA+TGG | - | chr5_1:51118289-51118308 | Msa0735660:CDS | 40.0% | |
| TTTAGCCCCTGATGTAAGAT+TGG | + | chr5_1:51118680-51118699 | None:intergenic | 40.0% | |
| ! | ATGTGAGAATTTGAGACTGC+TGG | + | chr5_1:51118722-51118741 | None:intergenic | 40.0% |
| ACAGTTGGATGGTTATCATG+AGG | + | chr5_1:51118773-51118792 | None:intergenic | 40.0% | |
| TTCAGTTCAACTTTGTTGGG+AGG | - | chr5_1:51118976-51118995 | Msa0735660:CDS | 40.0% | |
| CTTTCCCTCTGATAAATACG+CGG | + | chr5_1:51119055-51119074 | None:intergenic | 40.0% | |
| ATCTAAAGGAAGAGTTGCTG+AGG | - | chr5_1:51119410-51119429 | Msa0735660:intron | 40.0% | |
| TCTAAAGGAAGAGTTGCTGA+GGG | - | chr5_1:51119411-51119430 | Msa0735660:intron | 40.0% | |
| TCATTCAAGTGCTCAAATCC+TGG | + | chr5_1:51119442-51119461 | None:intergenic | 40.0% | |
| !!! | ACCACTGCACATTTTGATTG+AGG | - | chr5_1:51119462-51119481 | Msa0735660:intron | 40.0% |
| AGAAGAACTACTCAAACCTG+TGG | - | chr5_1:51119540-51119559 | Msa0735660:intron | 40.0% | |
| ACTTGGATTTCCTGCGATAA+GGG | - | chr5_1:51119803-51119822 | Msa0735660:intron | 40.0% | |
| ATCATGCAGTCAAGTGATCT+CGG | - | chr5_1:51119836-51119855 | Msa0735660:intron | 40.0% | |
| AGGCTTCCATTTAGAGGAAT+TGG | + | chr5_1:51119998-51120017 | None:intergenic | 40.0% | |
| TGTAACAGGCTTCCATTTAG+AGG | + | chr5_1:51120004-51120023 | None:intergenic | 40.0% | |
| ACACCGGCAATGTATCAATA+CGG | - | chr5_1:51120116-51120135 | Msa0735660:intron | 40.0% | |
| ! | CAACCGTATTGATACATTGC+CGG | + | chr5_1:51120122-51120141 | None:intergenic | 40.0% |
| GCCAATTTGGAGAAAAGAGA+AGG | - | chr5_1:51120438-51120457 | Msa0735660:five_prime_UTR | 40.0% | |
| ! | CCCTTCTCTTTTCTCCAAAT+TGG | + | chr5_1:51120442-51120461 | None:intergenic | 40.0% |
| GATGTCTGATAACAAGGGTG+TGG | + | chr5_1:51117268-51117287 | None:intergenic | 45.0% | |
| GTATTCCGGAATTCGTCAGA+AGG | + | chr5_1:51117621-51117640 | None:intergenic | 45.0% | |
| CCAGAAGCCCTTAAAATCTC+TGG | + | chr5_1:51118204-51118223 | None:intergenic | 45.0% | |
| !! | CCAGAGATTTTAAGGGCTTC+TGG | - | chr5_1:51118201-51118220 | Msa0735660:CDS | 45.0% |
| ! | TTAAGGGCTTCTGGAAAGAG+TGG | - | chr5_1:51118210-51118229 | Msa0735660:CDS | 45.0% |
| !! | AGTGGATTGATGCAGAACCA+AGG | - | chr5_1:51118228-51118247 | Msa0735660:CDS | 45.0% |
| ! | GTGGATTGATGCAGAACCAA+GGG | - | chr5_1:51118229-51118248 | Msa0735660:CDS | 45.0% |
| TAGGCTTGACACTAAACCCT+TGG | + | chr5_1:51118248-51118267 | None:intergenic | 45.0% | |
| CGACACTAACACGTAGACAT+CGG | - | chr5_1:51118373-51118392 | Msa0735660:intron | 45.0% | |
| ! | TTAAAGGTGTGTCTGGTCTC+TGG | + | chr5_1:51118434-51118453 | None:intergenic | 45.0% |
| CTTACATCAGGGGCTAAATG+TGG | - | chr5_1:51118682-51118701 | Msa0735660:CDS | 45.0% | |
| ATCAGGGGCTAAATGTGGAT+TGG | - | chr5_1:51118687-51118706 | Msa0735660:CDS | 45.0% | |
| TGTGAAGAAGATGTTGCGCT+TGG | - | chr5_1:51118742-51118761 | Msa0735660:intron | 45.0% | |
| AACTTTGTTGGGAGGCTTCT+TGG | - | chr5_1:51118984-51119003 | Msa0735660:CDS | 45.0% | |
| GCTTCAGTGAATTACCCCTT+GGG | + | chr5_1:51119010-51119029 | None:intergenic | 45.0% | |
| TAATTCACTGAAGCGAGTGG+AGG | - | chr5_1:51119016-51119035 | Msa0735660:CDS | 45.0% | |
| GTTGCCGCGTATTTATCAGA+GGG | - | chr5_1:51119048-51119067 | Msa0735660:intron | 45.0% | |
| CGCGTATTTATCAGAGGGAA+AGG | - | chr5_1:51119053-51119072 | Msa0735660:intron | 45.0% | |
| CTAAAGGAAGAGTTGCTGAG+GGG | - | chr5_1:51119412-51119431 | Msa0735660:intron | 45.0% | |
| GCCTCAATCAAAATGTGCAG+TGG | + | chr5_1:51119466-51119485 | None:intergenic | 45.0% | |
| GACTTGGATTTCCTGCGATA+AGG | - | chr5_1:51119802-51119821 | Msa0735660:intron | 45.0% | |
| TGCATACTTTCCCTTATCGC+AGG | + | chr5_1:51119816-51119835 | None:intergenic | 45.0% | |
| AGAGACTACCACTCAGTTGA+GGG | + | chr5_1:51120271-51120290 | None:intergenic | 45.0% | |
| TTTCCTCACCAGGAACAGCA+AGG | - | chr5_1:51117395-51117414 | Msa0735660:CDS | 50.0% | |
| TTCCTCACCAGGAACAGCAA+GGG | - | chr5_1:51117396-51117415 | Msa0735660:CDS | 50.0% | |
| !! | GAATTAGCCCTTGCTGTTCC+TGG | + | chr5_1:51117406-51117425 | None:intergenic | 50.0% |
| TCGGACCTTCTGACGAATTC+CGG | - | chr5_1:51117613-51117632 | Msa0735660:intron | 50.0% | |
| GTGTCGTGTCTGGTGTGTAT+TGG | + | chr5_1:51118359-51118378 | None:intergenic | 50.0% | |
| CTACGTGTTAGTGTCGTGTC+TGG | + | chr5_1:51118369-51118388 | None:intergenic | 50.0% | |
| CGCTTCAGTGAATTACCCCT+TGG | + | chr5_1:51119011-51119030 | None:intergenic | 50.0% | |
| GGGTAATTCACTGAAGCGAG+TGG | - | chr5_1:51119013-51119032 | Msa0735660:CDS | 50.0% | |
| GGTTGCCGCGTATTTATCAG+AGG | - | chr5_1:51119047-51119066 | Msa0735660:intron | 50.0% | |
| GAGAGACTACCACTCAGTTG+AGG | + | chr5_1:51120272-51120291 | None:intergenic | 50.0% | |
| AAGCGAGTGGAGGCTACTAC+TGG | - | chr5_1:51119026-51119045 | Msa0735660:intron | 55.0% | |
| AGGAAGAGTTGCTGAGGGGA+AGG | - | chr5_1:51119416-51119435 | Msa0735660:intron | 55.0% | |
| GAAGAGAGCCCTCAACTGAG+TGG | - | chr5_1:51120260-51120279 | Msa0735660:intron | 55.0% | |
| !! | AGCCCTTGCTGTTCCTGGTG+AGG | + | chr5_1:51117401-51117420 | None:intergenic | 60.0% |
| TTGGGAGGCTTCTTGGCCCA+AGG | - | chr5_1:51118991-51119010 | Msa0735660:CDS | 60.0% | |
| TGGGAGGCTTCTTGGCCCAA+GGG | - | chr5_1:51118992-51119011 | Msa0735660:CDS | 60.0% | |
| GGGAGGCTTCTTGGCCCAAG+GGG | - | chr5_1:51118993-51119012 | Msa0735660:CDS | 65.0% | |
| GAGTTGCTGAGGGGAAGGCC+AGG | - | chr5_1:51119421-51119440 | Msa0735660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 51117054 | 51120675 | 51117054 | ID=Msa0735660;Name=Msa0735660 |
| chr5_1 | mRNA | 51117054 | 51120675 | 51117054 | ID=Msa0735660-mRNA-1;Parent=Msa0735660;Name=Msa0735660-mRNA-1;_AED=0.17;_eAED=0.17;_QI=316|0.83|0.85|1|0.83|0.85|7|335|248 |
| chr5_1 | exon | 51117054 | 51117538 | 51117054 | ID=Msa0735660-mRNA-1:exon:14427;Parent=Msa0735660-mRNA-1 |
| chr5_1 | exon | 51118168 | 51118311 | 51118168 | ID=Msa0735660-mRNA-1:exon:14426;Parent=Msa0735660-mRNA-1 |
| chr5_1 | exon | 51118632 | 51118748 | 51118632 | ID=Msa0735660-mRNA-1:exon:14425;Parent=Msa0735660-mRNA-1 |
| chr5_1 | exon | 51118939 | 51119037 | 51118939 | ID=Msa0735660-mRNA-1:exon:14424;Parent=Msa0735660-mRNA-1 |
| chr5_1 | exon | 51119472 | 51119524 | 51119472 | ID=Msa0735660-mRNA-1:exon:14423;Parent=Msa0735660-mRNA-1 |
| chr5_1 | exon | 51119888 | 51119976 | 51119888 | ID=Msa0735660-mRNA-1:exon:14422;Parent=Msa0735660-mRNA-1 |
| chr5_1 | exon | 51120265 | 51120675 | 51120265 | ID=Msa0735660-mRNA-1:exon:14421;Parent=Msa0735660-mRNA-1 |
| chr5_1 | five_prime_UTR | 51120360 | 51120675 | 51120360 | ID=Msa0735660-mRNA-1:five_prime_utr;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51120265 | 51120359 | 51120265 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51119888 | 51119976 | 51119888 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51119472 | 51119524 | 51119472 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51118939 | 51119037 | 51118939 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51118632 | 51118748 | 51118632 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51118168 | 51118311 | 51118168 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | CDS | 51117389 | 51117538 | 51117389 | ID=Msa0735660-mRNA-1:cds;Parent=Msa0735660-mRNA-1 |
| chr5_1 | three_prime_UTR | 51117054 | 51117388 | 51117054 | ID=Msa0735660-mRNA-1:three_prime_utr;Parent=Msa0735660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
