AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236090 MtrunA17_Chr2g0284991 92.632 380 28 0 1 380 1 380 0.0 726
Msa0236090 MtrunA17_Chr2g0284951 79.474 380 69 3 1 380 1 371 0.0 605
Msa0236090 MtrunA17_Chr2g0285001 76.378 381 85 2 1 380 1 377 0.0 590
Msa0236090 MtrunA17_Chr2g0284941 75.000 380 70 3 1 380 1 355 0.0 571
Msa0236090 MtrunA17_Chr2g0284921 64.146 357 123 5 6 359 6 360 1.97e-150 429
Msa0236090 MtrunA17_Chr3g0085881 59.322 354 137 5 6 359 6 352 3.44e-140 402
Msa0236090 MtrunA17_Chr8g0380031 57.692 364 135 7 1 359 56 405 3.10e-138 400
Msa0236090 MtrunA17_Chr8g0380041 48.603 358 165 7 14 359 12 362 5.86e-110 326
Msa0236090 MtrunA17_Chr2g0285061 46.089 358 175 6 14 359 13 364 1.43e-105 315
Msa0236090 MtrunA17_Chr3g0086641 44.837 368 187 8 3 359 7 369 2.18e-103 310
Msa0236090 MtrunA17_Chr3g0077581 43.213 361 191 6 8 358 12 368 1.85e-92 281
Msa0236090 MtrunA17_Chr3g0077571 43.014 365 189 11 4 359 2 356 1.13e-87 269
Msa0236090 MtrunA17_Chr3g0131321 41.570 344 179 11 33 361 34 370 1.28e-77 244
Msa0236090 MtrunA17_Chr4g0017431 37.568 370 205 11 5 359 4 362 1.56e-68 220
Msa0236090 MtrunA17_Chr7g0275021 36.657 341 201 8 11 338 8 346 1.84e-62 204
Msa0236090 MtrunA17_Chr2g0284931 46.581 234 106 3 126 359 5 219 7.52e-60 193
Msa0236090 MtrunA17_Chr5g0434621 38.994 318 179 10 35 342 27 339 3.11e-59 196
Msa0236090 MtrunA17_Chr7g0275011 32.153 367 227 10 4 357 6 363 4.42e-58 193
Msa0236090 MtrunA17_Chr4g0068441 36.232 345 202 11 7 338 9 348 9.13e-56 187
Msa0236090 MtrunA17_Chr2g0294301 37.654 324 186 10 30 341 32 351 4.12e-55 185
Msa0236090 MtrunA17_Chr2g0294311 34.771 371 214 13 9 359 10 372 1.85e-54 184
Msa0236090 MtrunA17_Chr2g0320671 36.286 350 192 11 5 336 4 340 2.06e-54 183
Msa0236090 MtrunA17_Chr7g0274991 33.140 344 204 9 15 338 8 345 2.06e-53 181
Msa0236090 MtrunA17_Chr1g0189901 32.164 342 213 9 34 363 32 366 1.02e-52 179
Msa0236090 MtrunA17_Chr8g0374101 34.670 349 201 12 9 336 12 354 2.62e-52 178
Msa0236090 MtrunA17_Chr3g0085231 35.068 365 210 12 4 359 3 349 3.58e-52 177
Msa0236090 MtrunA17_Chr1g0189891 32.865 356 227 8 8 357 4 353 1.11e-51 176
Msa0236090 MtrunA17_Chr1g0182811 30.214 374 244 9 1 362 1 369 9.45e-51 174
Msa0236090 MtrunA17_Chr1g0189931 30.747 348 218 8 33 369 32 367 1.07e-50 174
Msa0236090 MtrunA17_Chr6g0457921 31.250 368 226 9 5 353 4 363 3.95e-50 172
Msa0236090 MtrunA17_Chr1g0156911 32.033 359 222 11 1 343 1 353 9.06e-50 171
Msa0236090 MtrunA17_Chr4g0060811 37.304 319 173 12 35 336 29 337 6.09e-49 169
Msa0236090 MtrunA17_Chr7g0275001 31.214 346 220 9 29 362 21 360 6.52e-49 169
Msa0236090 MtrunA17_Chr3g0092131 36.888 347 190 14 5 336 1 333 7.93e-49 169
Msa0236090 MtrunA17_Chr1g0156921 32.565 347 199 12 9 330 10 346 1.48e-48 168
Msa0236090 MtrunA17_Chr5g0438621 32.764 351 202 12 4 336 6 340 6.04e-48 166
Msa0236090 MtrunA17_Chr5g0396511 31.858 339 215 10 35 362 48 381 6.21e-48 167
Msa0236090 MtrunA17_Chr1g0156901 32.749 342 211 10 3 330 17 353 1.68e-47 165
Msa0236090 MtrunA17_Chr5g0438641 34.808 339 199 11 11 336 13 342 3.15e-47 164
Msa0236090 MtrunA17_Chr3g0105401 33.618 351 206 12 1 336 1 339 3.64e-47 164
Msa0236090 MtrunA17_Chr5g0405831 35.202 321 189 11 31 337 41 356 1.29e-46 163
Msa0236090 MtrunA17_Chr5g0405821 36.723 354 199 16 2 337 11 357 1.97e-46 162
Msa0236090 MtrunA17_Chr7g0215961 31.861 317 188 7 27 332 27 326 2.03e-46 162
Msa0236090 MtrunA17_Chr4g0008851 32.903 310 197 7 33 332 32 340 3.80e-46 162
Msa0236090 MtrunA17_Chr1g0156931 32.092 349 210 11 1 329 1 342 3.89e-46 161
Msa0236090 MtrunA17_Chr3g0120861 34.161 322 191 10 29 336 34 348 6.30e-46 161
Msa0236090 MtrunA17_Chr2g0285041 63.866 119 42 1 86 203 1 119 9.25e-46 154
Msa0236090 MtrunA17_Chr5g0444401 30.189 371 227 12 5 357 3 359 2.04e-45 159
Msa0236090 MtrunA17_Chr4g0027521 35.882 340 183 14 13 332 12 336 2.52e-45 159
Msa0236090 MtrunA17_Chr3g0099231 30.287 383 238 13 1 368 1 369 2.89e-45 160
Msa0236090 MtrunA17_Chr1g0156891 35.443 316 179 11 31 330 41 347 1.15e-43 155
Msa0236090 MtrunA17_Chr3g0142941 34.084 311 189 9 31 330 45 350 8.77e-42 150
Msa0236090 MtrunA17_Chr8g0371491 33.235 340 209 12 11 337 14 348 1.13e-41 149
Msa0236090 MtrunA17_Chr5g0420811 31.173 324 193 10 30 340 30 336 1.22e-41 149
Msa0236090 MtrunA17_Chr3g0099151 32.092 349 205 13 30 358 84 420 1.22e-41 151
Msa0236090 MtrunA17_Chr3g0142921 32.692 312 191 11 32 330 35 340 2.68e-41 149
Msa0236090 MtrunA17_Chr8g0341001 34.195 348 201 14 6 336 7 343 2.79e-41 148
Msa0236090 MtrunA17_Chr2g0301641 33.618 351 192 15 8 329 10 348 5.24e-41 149
Msa0236090 MtrunA17_Chr2g0330781 33.025 324 189 10 31 336 29 342 5.48e-41 147
Msa0236090 MtrunA17_Chr5g0438631 30.484 351 217 10 1 336 1 339 7.16e-41 147
Msa0236090 MtrunA17_Chr3g0099161 31.759 381 218 18 1 357 61 423 3.31e-40 147
Msa0236090 MtrunA17_Chr8g0371471 30.435 345 216 12 3 329 6 344 5.09e-39 142
Msa0236090 MtrunA17_Chr5g0432101 31.173 324 202 10 28 336 28 345 6.65e-39 142
Msa0236090 MtrunA17_Chr8g0371481 30.145 345 218 12 3 329 6 345 7.53e-39 142
Msa0236090 MtrunA17_Chr8g0344931 33.333 351 209 13 19 359 25 360 8.63e-39 142
Msa0236090 MtrunA17_Chr8g0370951 30.435 345 215 12 4 329 1 339 1.37e-38 142
Msa0236090 MtrunA17_Chr2g0284981 68.478 92 29 0 289 380 9 100 2.84e-38 132
Msa0236090 MtrunA17_Chr6g0455661 35.242 227 137 5 139 359 249 471 2.29e-37 140
Msa0236090 MtrunA17_Chr6g0455661 53.000 100 42 2 32 131 30 124 4.12e-25 106
Msa0236090 MtrunA17_Chr6g0459921 34.440 241 147 6 126 359 124 360 1.02e-36 136
Msa0236090 MtrunA17_Chr1g0157001 31.609 348 209 13 38 373 41 371 1.42e-36 136
Msa0236090 MtrunA17_Chr8g0344941 31.657 338 201 12 14 330 18 346 3.12e-36 135
Msa0236090 MtrunA17_Chr4g0046151 28.242 347 223 11 13 338 16 357 1.34e-35 133
Msa0236090 MtrunA17_Chr5g0437421 29.560 318 202 8 29 329 28 340 6.47e-34 129
Msa0236090 MtrunA17_Chr8g0349341 30.159 378 212 14 13 360 10 365 2.08e-33 127
Msa0236090 MtrunA17_Chr2g0283191 27.714 350 224 12 1 329 9 350 4.22e-33 127
Msa0236090 MtrunA17_Chr8g0349321 29.867 375 217 14 13 360 10 365 3.27e-32 124
Msa0236090 MtrunA17_Chr8g0349301 32.476 311 169 13 9 298 6 296 1.57e-31 121
Msa0236090 MtrunA17_Chr7g0229591 36.634 202 121 5 10 208 7 204 1.75e-31 118
Msa0236090 MtrunA17_Chr8g0370981 26.781 407 233 14 9 358 19 417 6.77e-27 110
Msa0236090 MtrunA17_Chr8g0349331 27.405 343 188 12 34 360 36 333 1.57e-24 102
Msa0236090 MtrunA17_Chr6g0469511 45.082 122 63 3 21 139 18 138 2.14e-24 97.4
Msa0236090 MtrunA17_Chr4g0027561 42.735 117 64 2 10 123 7 123 2.52e-24 97.4
Msa0236090 MtrunA17_Chr1g0160101 26.197 355 218 9 13 332 19 364 4.00e-24 102
Msa0236090 MtrunA17_Chr2g0285051 62.222 90 31 1 1 87 1 90 1.48e-22 91.7
Msa0236090 MtrunA17_Chr7g0226911 27.151 372 211 13 13 338 10 367 2.16e-22 97.4
Msa0236090 MtrunA17_Chr1g0160011 27.027 333 205 10 32 335 39 362 4.34e-22 96.7
Msa0236090 MtrunA17_Chr6g0450721 27.761 335 204 12 23 336 23 340 3.40e-21 93.6
Msa0236090 MtrunA17_Chr6g0450711 26.844 339 205 12 28 336 117 442 5.05e-21 94.4
Msa0236090 MtrunA17_Chr1g0178941 27.778 324 192 11 34 334 41 345 1.26e-20 92.0
Msa0236090 MtrunA17_Chr8g0381581 24.793 363 229 11 5 332 11 364 1.56e-20 92.4
Msa0236090 MtrunA17_Chr2g0285031 53.425 73 34 0 287 359 5 77 2.14e-20 84.7
Msa0236090 MtrunA17_Chr7g0226931 26.329 395 223 13 1 341 4 384 5.98e-20 90.5
Msa0236090 MtrunA17_Chr7g0275291 25.199 377 229 14 13 350 9 371 8.33e-20 90.1
Msa0236090 MtrunA17_Chr6g0450701 27.371 369 222 17 1 336 4 359 9.10e-20 89.7
Msa0236090 MtrunA17_Chr1g0160031 26.254 339 200 11 32 335 38 361 1.14e-19 89.7
Msa0236090 MtrunA17_Chr4g0027571 31.455 213 127 6 134 334 3 208 2.14e-19 86.3
Msa0236090 MtrunA17_Chr1g0198351 26.197 355 210 17 4 331 7 336 2.30e-19 88.6
Msa0236090 MtrunA17_Chr7g0254461 26.027 365 224 12 5 332 13 368 2.65e-19 88.6
Msa0236090 MtrunA17_Chr1g0159981 26.703 367 226 12 1 335 15 370 3.39e-19 88.2
Msa0236090 MtrunA17_Chr1g0178931 27.445 317 194 13 34 334 38 334 3.87e-19 87.8
Msa0236090 MtrunA17_Chr2g0283511 28.412 359 209 16 6 330 5 349 8.59e-19 87.0
Msa0236090 MtrunA17_Chr1g0159971 25.956 366 215 13 3 330 19 366 2.79e-18 85.9
Msa0236090 MtrunA17_Chr6g0450731 26.235 324 207 12 32 336 32 342 3.08e-18 85.1
Msa0236090 MtrunA17_Chr1g0159991 25.852 352 215 12 32 351 35 372 7.26e-18 84.3
Msa0236090 MtrunA17_Chr2g0283501 25.549 364 213 12 3 330 7 348 7.65e-18 84.3
Msa0236090 MtrunA17_Chr8g0370971 40.870 115 61 3 24 131 29 143 8.50e-18 80.1
Msa0236090 MtrunA17_Chr3g0104821 26.946 334 190 14 34 330 45 361 2.81e-17 82.8
Msa0236090 MtrunA17_Chr1g0189921 44.086 93 50 2 33 123 31 123 3.47e-17 78.2
Msa0236090 MtrunA17_Chr2g0321991 38.983 118 61 4 3 116 9 119 5.09e-17 76.6
Msa0236090 MtrunA17_Chr2g0308201 50.602 83 40 1 4 86 7 88 6.61e-17 75.5
Msa0236090 MtrunA17_Chr7g0266061 25.926 324 203 12 28 334 37 340 1.85e-16 80.1
Msa0236090 MtrunA17_Chr1g0198381 24.611 321 198 15 34 334 3 299 2.96e-16 79.0
Msa0236090 MtrunA17_Chr8g0370961 26.639 244 152 9 128 358 14 243 7.30e-16 76.6
Msa0236090 MtrunA17_Chr0c01g0489581 28.116 345 200 18 14 330 8 332 1.18e-15 77.4
Msa0236090 MtrunA17_Chr4g0057991 24.615 325 203 11 34 330 40 350 1.47e-15 77.4
Msa0236090 MtrunA17_Chr2g0283481 25.994 327 201 13 34 330 48 363 3.22e-15 76.6
Msa0236090 MtrunA17_Chr5g0440501 26.106 226 151 6 151 362 30 253 5.81e-15 73.9
Msa0236090 MtrunA17_Chr7g0273101 24.340 341 209 11 32 336 28 355 7.26e-15 75.5
Msa0236090 MtrunA17_Chr7g0226941 24.786 351 205 13 32 341 32 364 2.03e-14 73.9
Msa0236090 MtrunA17_Chr8g0347751 23.011 352 207 14 34 341 37 368 4.45e-14 73.2
Msa0236090 MtrunA17_Chr4g0018561 43.836 73 40 1 10 81 7 79 1.27e-12 63.5
Msa0236090 MtrunA17_Chr1g0198391 27.376 263 129 9 34 266 34 264 1.84e-12 68.2
Msa0236090 MtrunA17_Chr3g0104801 40.449 89 49 3 33 118 44 131 8.96e-12 63.5
Msa0236090 MtrunA17_Chr3g0112821 25.538 325 198 13 34 330 31 339 9.53e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236090 AT1G29670.1 46.995 366 183 6 1 359 1 362 5.25e-113 334
Msa0236090 AT1G29670.2 46.995 366 183 6 1 359 69 430 8.75e-112 333
Msa0236090 AT1G29660.1 46.612 369 181 8 1 359 1 363 7.24e-111 329
Msa0236090 AT5G45670.1 47.941 340 159 6 31 358 27 360 2.87e-104 312
Msa0236090 AT4G18970.1 47.826 345 162 6 27 359 22 360 6.20e-104 311
Msa0236090 AT4G18970.2 47.826 345 162 6 27 359 22 360 1.38e-102 309
Msa0236090 AT1G33811.1 41.823 373 192 8 4 358 3 368 3.22e-96 291
Msa0236090 AT2G19010.1 44.101 356 179 7 8 360 10 348 2.74e-92 281
Msa0236090 AT2G19010.2 43.820 356 180 6 8 360 40 378 1.54e-91 280
Msa0236090 AT2G19050.1 45.541 314 160 5 30 340 28 333 1.09e-84 261
Msa0236090 AT1G71691.2 41.176 340 187 7 27 359 49 382 1.58e-83 259
Msa0236090 AT4G30140.1 44.409 313 165 3 30 341 30 334 2.41e-79 248
Msa0236090 AT5G08460.1 39.037 374 209 11 1 359 15 384 1.91e-77 244
Msa0236090 AT2G19060.1 41.896 327 172 7 21 340 19 334 1.61e-74 235
Msa0236090 AT2G19050.2 48.790 248 119 2 30 277 28 267 2.37e-74 233
Msa0236090 AT5G15720.1 40.341 352 186 11 26 359 18 363 7.15e-73 231
Msa0236090 AT1G71250.1 38.827 358 201 10 13 357 18 370 1.55e-69 223
Msa0236090 AT1G71691.3 43.825 251 137 4 27 277 49 295 4.71e-67 215
Msa0236090 AT1G71691.1 36.014 286 170 7 80 358 1 280 3.65e-57 188
Msa0236090 AT3G50400.1 34.037 379 217 14 6 359 3 373 7.13e-56 187
Msa0236090 AT4G28780.1 33.724 341 207 11 1 329 1 334 9.94e-56 187
Msa0236090 AT5G15720.2 42.966 263 135 8 26 277 18 276 1.62e-55 185
Msa0236090 AT1G74460.1 37.647 340 181 14 16 336 6 333 1.03e-52 179
Msa0236090 AT2G23540.1 35.714 350 187 14 35 359 50 386 4.91e-52 178
Msa0236090 AT5G37690.1 36.422 313 182 11 35 336 29 335 9.42e-52 176
Msa0236090 AT2G04570.1 36.070 341 199 11 15 342 10 344 2.26e-51 175
Msa0236090 AT3G04290.1 32.727 330 207 8 14 334 14 337 2.78e-51 176
Msa0236090 AT5G33370.1 30.636 346 225 8 28 363 25 365 1.84e-48 168
Msa0236090 AT5G15720.3 36.655 281 161 8 92 359 56 332 2.75e-48 167
Msa0236090 AT5G03820.1 34.347 329 187 10 27 336 27 345 4.31e-48 167
Msa0236090 AT5G41890.1 35.143 350 187 12 14 336 17 353 5.56e-48 167
Msa0236090 AT5G03820.2 34.154 325 193 10 27 336 55 373 6.49e-48 167
Msa0236090 AT5G22810.1 36.544 353 188 13 8 336 7 347 2.51e-47 165
Msa0236090 AT2G42990.1 34.139 331 199 11 29 346 24 348 2.56e-47 164
Msa0236090 AT4G16230.1 40.000 245 133 8 13 249 10 248 4.68e-47 161
Msa0236090 AT5G37690.2 34.505 313 180 12 35 336 29 327 1.18e-46 163
Msa0236090 AT3G53100.1 34.954 329 189 10 24 336 20 339 1.70e-46 162
Msa0236090 AT5G18430.1 33.134 335 203 10 11 332 10 336 5.98e-46 161
Msa0236090 AT1G75880.2 32.865 356 208 13 2 336 18 363 2.48e-45 160
Msa0236090 AT1G59406.1 32.845 341 202 10 5 329 1 330 4.89e-45 159
Msa0236090 AT1G59030.1 32.845 341 202 10 5 329 1 330 4.89e-45 159
Msa0236090 AT1G58725.1 32.845 341 202 10 5 329 1 330 4.89e-45 159
Msa0236090 AT4G10950.2 30.769 338 218 10 31 357 69 401 5.00e-45 160
Msa0236090 AT1G75880.1 32.865 356 209 13 2 336 18 364 8.03e-45 159
Msa0236090 AT5G63170.1 32.523 329 201 10 9 329 4 319 8.47e-45 157
Msa0236090 AT3G14820.1 34.234 333 199 11 26 345 25 350 4.30e-44 156
Msa0236090 AT1G75890.2 33.945 327 194 12 32 343 46 365 1.45e-43 155
Msa0236090 AT1G75890.3 33.945 327 194 12 32 343 75 394 1.80e-43 155
Msa0236090 AT5G03810.1 32.213 357 205 12 1 336 1 341 1.81e-43 154
Msa0236090 AT4G10950.1 30.769 338 214 11 31 357 69 397 6.58e-43 154
Msa0236090 AT5G42170.1 34.295 312 183 10 31 329 48 350 8.96e-43 153
Msa0236090 AT4G26790.1 34.688 320 192 10 29 336 25 339 1.96e-42 152
Msa0236090 AT4G26790.2 34.688 320 192 10 29 336 25 339 1.96e-42 152
Msa0236090 AT1G75890.1 32.544 338 197 11 32 343 46 378 2.43e-41 149
Msa0236090 AT1G20135.1 31.420 331 199 11 11 329 6 320 3.27e-40 145
Msa0236090 AT2G03980.2 30.499 341 200 9 22 341 32 356 3.97e-40 146
Msa0236090 AT2G03980.3 30.499 341 200 9 22 341 32 356 3.97e-40 146
Msa0236090 AT2G03980.1 30.499 341 200 9 22 341 32 356 3.97e-40 146
Msa0236090 AT2G03980.4 30.499 341 200 9 22 341 32 356 3.97e-40 146
Msa0236090 AT5G55050.1 31.118 331 195 10 23 330 28 348 5.47e-40 146
Msa0236090 AT1G58520.3 33.436 326 178 14 21 329 20 323 1.31e-39 144
Msa0236090 AT1G58525.1 33.436 326 178 14 21 329 20 323 1.31e-39 144
Msa0236090 AT3G16370.1 33.229 319 195 11 31 336 28 341 4.98e-39 143
Msa0236090 AT1G23500.1 32.722 327 194 11 13 329 16 326 1.28e-38 141
Msa0236090 AT5G33370.2 32.374 278 173 6 28 295 25 297 3.14e-38 140
Msa0236090 AT3G43550.1 34.409 279 159 9 8 277 7 270 5.87e-38 138
Msa0236090 AT3G43570.1 31.307 329 185 12 8 329 7 301 1.26e-37 138
Msa0236090 AT1G73610.1 31.902 326 197 11 13 329 16 325 1.87e-37 138
Msa0236090 AT1G53920.1 31.250 336 200 12 26 346 41 360 5.61e-37 138
Msa0236090 AT2G30220.1 31.157 337 202 14 16 330 11 339 2.56e-36 135
Msa0236090 AT1G71120.1 31.646 316 188 12 29 329 27 329 3.97e-36 135
Msa0236090 AT5G45950.1 28.528 326 220 9 11 329 18 337 1.22e-35 134
Msa0236090 AT1G58430.1 31.230 317 191 14 32 330 34 341 3.41e-35 132
Msa0236090 AT2G31540.1 31.579 323 199 13 28 334 30 346 3.86e-35 132
Msa0236090 AT2G40250.1 28.528 326 204 10 31 336 34 350 1.03e-34 131
Msa0236090 AT1G75900.1 30.838 334 208 11 13 329 18 345 1.06e-34 131
Msa0236090 AT1G20132.1 32.515 326 188 14 32 337 60 373 1.43e-34 131
Msa0236090 AT2G24560.1 31.503 346 212 14 3 330 2 340 3.20e-34 130
Msa0236090 AT1G20130.2 30.448 335 201 10 31 346 182 503 4.21e-34 132
Msa0236090 AT2G30310.1 30.696 316 194 13 32 330 33 340 4.25e-34 130
Msa0236090 AT1G20130.1 30.448 335 201 10 31 346 202 523 5.08e-34 132
Msa0236090 AT1G06990.1 28.834 326 206 10 29 337 33 349 3.82e-33 127
Msa0236090 AT5G45960.1 28.875 329 211 10 28 338 42 365 5.80e-33 127
Msa0236090 AT1G20120.1 30.645 310 198 11 32 329 77 381 1.06e-31 124
Msa0236090 AT3G14225.2 30.946 349 212 12 28 357 32 370 2.16e-31 122
Msa0236090 AT3G14225.1 30.484 351 215 12 28 357 32 374 4.88e-31 122
Msa0236090 AT1G75930.1 30.909 330 202 13 13 329 8 324 7.50e-31 120
Msa0236090 AT5G40990.1 29.570 372 234 12 7 359 10 372 1.04e-30 120
Msa0236090 AT2G24560.2 33.213 277 163 12 16 277 11 280 3.60e-30 118
Msa0236090 AT1G75910.1 31.420 331 199 13 13 329 8 324 1.11e-29 117
Msa0236090 AT1G75920.2 30.838 334 208 12 6 329 4 324 1.65e-29 117
Msa0236090 AT1G53940.2 30.286 350 207 15 33 359 39 374 1.86e-27 112
Msa0236090 AT1G53990.1 28.042 378 230 13 9 359 1 363 1.49e-26 109
Msa0236090 AT2G04020.2 27.937 315 180 10 32 341 42 314 8.05e-26 106
Msa0236090 AT2G04020.1 32.524 206 125 5 32 232 42 238 8.21e-26 105
Msa0236090 AT1G75920.1 29.480 346 206 13 9 329 2 334 1.98e-25 105
Msa0236090 AT1G54020.2 27.225 382 230 16 3 366 7 358 7.39e-25 104
Msa0236090 AT1G53940.1 32.258 248 145 11 33 269 39 274 7.89e-24 100
Msa0236090 AT5G03610.1 28.086 324 193 15 34 337 44 347 1.87e-23 100
Msa0236090 AT4G16220.1 48.305 118 55 4 1 116 1 114 4.03e-23 97.4
Msa0236090 AT5G14450.1 26.579 380 221 12 1 341 12 372 4.15e-23 100
Msa0236090 AT1G54010.1 27.507 349 216 14 34 365 37 365 7.85e-23 99.4
Msa0236090 AT1G31550.1 27.324 355 196 16 13 330 20 349 4.62e-22 97.1
Msa0236090 AT1G31550.2 28.571 357 192 16 13 330 20 352 5.99e-22 96.7
Msa0236090 AT1G28610.2 27.123 365 210 17 1 330 4 347 9.31e-22 96.3
Msa0236090 AT3G14210.1 26.776 366 222 13 33 375 36 378 1.74e-21 95.5
Msa0236090 AT1G54000.1 26.133 375 233 17 13 366 15 366 3.47e-21 94.4
Msa0236090 AT1G28570.1 26.989 352 185 13 23 330 28 351 9.05e-21 93.2
Msa0236090 AT2G27360.1 27.855 359 212 14 4 330 8 351 1.08e-20 93.2
Msa0236090 AT3G05180.1 26.023 342 204 10 32 337 35 363 2.73e-20 91.7
Msa0236090 AT1G28580.1 27.441 379 191 16 4 330 8 354 3.68e-20 91.7
Msa0236090 AT1G75920.4 29.682 283 178 11 57 329 25 296 8.88e-20 89.4
Msa0236090 AT3G09930.2 26.347 334 187 19 34 337 40 344 9.04e-20 90.1
Msa0236090 AT3G09930.1 26.347 334 187 19 34 337 40 344 9.04e-20 90.1
Msa0236090 AT1G28590.1 26.912 353 204 16 13 330 20 353 1.31e-19 90.1
Msa0236090 AT1G54790.3 25.140 358 223 11 9 332 8 354 7.65e-19 87.8
Msa0236090 AT1G75920.3 28.012 332 189 12 6 329 4 293 7.83e-19 86.7
Msa0236090 AT1G54030.1 24.675 308 202 10 34 333 53 338 2.32e-18 86.7
Msa0236090 AT3G26430.1 26.882 372 211 15 5 332 1 355 3.90e-18 85.5
Msa0236090 AT1G28600.1 25.620 363 205 16 8 330 10 347 1.07e-17 84.3
Msa0236090 AT1G28660.2 27.042 355 203 17 16 330 13 351 1.20e-17 84.0
Msa0236090 AT3G62280.1 27.660 329 189 15 32 332 35 342 1.41e-17 83.6
Msa0236090 AT3G27950.1 25.272 368 227 10 3 338 2 353 5.25e-17 82.0
Msa0236090 AT1G54790.1 24.791 359 215 12 13 332 11 353 5.78e-17 82.0
Msa0236090 AT5G03600.2 24.786 351 216 15 10 337 20 345 5.96e-16 79.0
Msa0236090 AT1G28610.1 32.292 192 105 9 1 179 4 183 1.75e-15 75.9
Msa0236090 AT5G03600.1 24.615 325 203 14 30 337 11 310 1.86e-15 77.0
Msa0236090 AT1G67830.1 24.642 349 213 11 19 332 21 354 1.11e-14 75.1
Msa0236090 AT1G54020.1 25.000 296 182 12 87 366 1 272 2.14e-14 73.6
Msa0236090 AT1G54020.5 25.000 296 182 12 87 366 1 272 2.14e-14 73.6
Msa0236090 AT1G54020.3 25.000 296 182 12 87 366 1 272 2.14e-14 73.6
Msa0236090 AT3G62280.2 28.352 261 152 12 32 277 35 275 7.58e-14 72.0
Msa0236090 AT1G28600.2 31.461 178 99 8 8 173 10 176 8.02e-14 70.5
Msa0236090 AT1G54030.2 24.138 232 150 7 33 260 52 261 1.81e-13 70.9
Msa0236090 AT4G16233.1 34.127 126 72 6 241 358 6 128 1.98e-13 67.4
Msa0236090 AT1G56670.1 25.225 333 206 13 32 338 39 354 4.55e-13 70.5
Msa0236090 AT3G48460.1 22.985 335 210 13 34 336 39 357 1.42e-12 68.9
Msa0236090 AT3G14210.2 27.966 236 146 10 158 375 21 250 2.30e-12 67.0
Msa0236090 AT5G45910.1 27.381 336 191 15 34 330 31 352 2.47e-12 68.2
Msa0236090 AT1G54020.4 27.419 186 114 7 157 329 8 185 1.84e-11 63.9

Find 106 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCATTTGCAAACATTAA+TGG 0.140996 2_2:-9041100 Msa0236090:CDS
TTTGATGTGATTACATTTAT+AGG 0.141537 2_2:+9040045 None:intergenic
TTGATTGCAGCTCAGCTTCT+TGG 0.213467 2_2:-9041139 Msa0236090:intron
CTTAGTGCCTCTAGTTAAAT+AGG 0.214657 2_2:-9040021 Msa0236090:exon
TGTGGCTTGTTGGATATAAT+TGG 0.215096 2_2:+9040763 None:intergenic
TAATTTATATGAAAGCTATT+TGG 0.225849 2_2:+9039967 None:intergenic
TCTGATTACCAGAATTTAAA+TGG 0.226064 2_2:-9040377 Msa0236090:intron
TAACAGGCTTTACATGAAAT+TGG 0.232077 2_2:-9040605 Msa0236090:intron
ACTGTTTATAAATATGAATT+TGG 0.232432 2_2:+9040409 None:intergenic
AATAATTACCATTTAAATTC+TGG 0.235134 2_2:+9040369 None:intergenic
AGAGTTATCTTTGAATTTAC+AGG 0.246825 2_2:-9040703 Msa0236090:intron
ATGAAAGGCCATGCCATAAT+AGG 0.255257 2_2:-9040221 Msa0236090:CDS
GTTACCTGGGTTAGGCCTAT+TGG 0.264459 2_2:-9040567 Msa0236090:CDS
TATAATTCATATAATAATTT+AGG 0.279034 2_2:-9040129 Msa0236090:CDS
GCCAATCCAGGAAATAATTA+AGG 0.288705 2_2:+9041545 None:intergenic
ACACATACTCTCCCCTATTA+TGG 0.313229 2_2:+9040208 None:intergenic
TTACCTGGGTTAGGCCTATT+GGG 0.313526 2_2:-9040566 Msa0236090:CDS
TTGGTTCCTTAATTATTTCC+TGG 0.316251 2_2:-9041551 Msa0236090:five_prime_UTR
AAATGTAACTATAAACCTTA+TGG 0.324329 2_2:-9041333 Msa0236090:CDS
AATAATGAAATAAGTTTAAT+CGG 0.339188 2_2:-9039846 Msa0236090:intron
TCCTTAATTATTTCCTGGAT+TGG 0.348432 2_2:-9041546 Msa0236090:five_prime_UTR
GAAAAGATTGTTTCAAATGT+AGG 0.356575 2_2:+9039895 None:intergenic
ACAAGAAACTATGAAGGAAT+TGG 0.361806 2_2:-9040070 Msa0236090:CDS
AACTATGCATCTGGCGCAGC+TGG 0.366916 2_2:-9041055 Msa0236090:CDS
ATAGGGGAGAGTATGTGTTT+TGG 0.376746 2_2:-9040203 Msa0236090:CDS
GGGCTATAAATGTGGCTTGT+TGG 0.378126 2_2:+9040753 None:intergenic
TGAAAGGCCATGCCATAATA+GGG 0.385623 2_2:-9040220 Msa0236090:CDS
TGTTGCAAAACAAGATTGAT+TGG 0.387307 2_2:-9040258 Msa0236090:CDS
TCGACCGTTGGTAAATCTTC+CGG 0.392186 2_2:+9041287 None:intergenic
TTATGGCATGGCCTTTCATC+AGG 0.402123 2_2:+9040225 None:intergenic
TAAATTCTGGTAATCAGATT+CGG 0.406225 2_2:+9040382 None:intergenic
GGAGACTCTTTATCTGATAG+TGG 0.414420 2_2:-9041384 Msa0236090:CDS
GTGGCTTGTTGGATATAATT+GGG 0.419954 2_2:+9040764 None:intergenic
TGCTTGTATTATGTGCATAT+TGG 0.423781 2_2:-9040819 Msa0236090:CDS
GACTTTCCGATGGGACCAAC+CGG 0.425728 2_2:-9041306 Msa0236090:CDS
ATAGCAAGATGAAGACATAT+TGG 0.427079 2_2:+9041577 None:intergenic
CTTACAAACAAGATAAGAAT+AGG 0.427206 2_2:+9041462 None:intergenic
GTCTTCATCTTGCTATCGGT+TGG 0.435828 2_2:-9041570 Msa0236090:five_prime_UTR
GCAAGGTTCTTAATATCCAT+TGG 0.444652 2_2:+9040096 None:intergenic
CACTTGGAGTGCAGCCCAAT+AGG 0.447176 2_2:+9040552 None:intergenic
TGTTTCATTGTTAGCAATGT+GGG 0.451020 2_2:+9036087 None:intergenic
ATCTTTACTCATGGGACAGA+TGG 0.453385 2_2:-9040527 Msa0236090:CDS
GGAACCTAGTCACTGCAATA+AGG 0.456230 2_2:-9040155 Msa0236090:CDS
GTCAATTGAAGTTCGACCGT+TGG 0.472588 2_2:+9041275 None:intergenic
ATCGGAAAGTCAATTCCATA+AGG 0.476002 2_2:+9041318 None:intergenic
TCTCAAATTGCTAGCAGACT+TGG 0.484679 2_2:-9040876 Msa0236090:CDS
CATAATACAAGCATTTGTTA+AGG 0.485419 2_2:+9040829 None:intergenic
AAAGGTGTGAACTATGCATC+TGG 0.486909 2_2:-9041064 Msa0236090:CDS
AAATATGTGTTACCTGGGTT+AGG 0.497677 2_2:-9040575 Msa0236090:CDS
ATCTGTCCCATGAGTAAAGA+TGG 0.499056 2_2:+9040529 None:intergenic
ATATGTCTTCATCTTGCTAT+CGG 0.502230 2_2:-9041574 Msa0236090:five_prime_UTR
CCAAGTGCCATCTTTACTCA+TGG 0.503568 2_2:-9040536 Msa0236090:CDS
TATTGAGACAAGCATGGCTA+AGG 0.505818 2_2:-9041026 Msa0236090:intron
GGTTCCAAGCCTCAGTGGTA+TGG 0.506388 2_2:+9040172 None:intergenic
TGCATGAAGGTTTCAATAGC+CGG 0.520816 2_2:-9036007 Msa0236090:three_prime_UTR
TTTAGGCTTCACTTATCCAA+TGG 0.522099 2_2:-9040112 Msa0236090:CDS
CTAATGAAGCTAGCCAATCC+AGG 0.527234 2_2:+9041533 None:intergenic
TTCCAAGCTTAAATCTCTAG+TGG 0.527818 2_2:-9040462 Msa0236090:CDS
GCAAGAAAATATGTGTTACC+TGG 0.530877 2_2:-9040581 Msa0236090:CDS
CCATGAGTAAAGATGGCACT+TGG 0.532433 2_2:+9040536 None:intergenic
TCATAGTTTCTTGTTCAGCA+AGG 0.532778 2_2:+9040079 None:intergenic
GAGCCATTAATGTTTGCAAA+TGG 0.538343 2_2:+9041097 None:intergenic
CATTGATAGAATGATAGTGT+TGG 0.546100 2_2:-9035926 Msa0236090:three_prime_UTR
TAATGAAATGACATCAGTGC+TGG 0.549235 2_2:+9035954 None:intergenic
CCATTAATGTTTGCAAATGG+TGG 0.549519 2_2:+9041100 None:intergenic
TATGGAATTGACTTTCCGAT+GGG 0.551000 2_2:-9041315 Msa0236090:CDS
ATTGTAACAGCATATGAGTA+GGG 0.551027 2_2:+9039943 None:intergenic
AATCTTCCGGTTGGTCCCAT+CGG 0.551140 2_2:+9041300 None:intergenic
AATTCCATACCACTGAGGCT+TGG 0.552193 2_2:-9040176 Msa0236090:CDS
TATTTGCAACAATGTGTCAA+TGG 0.553346 2_2:-9041438 Msa0236090:CDS
GACATCAGTGCTGGCTAAGG+AGG 0.555539 2_2:+9035963 None:intergenic
TATTGTAACAGCATATGAGT+AGG 0.556373 2_2:+9039942 None:intergenic
ATCTATAATAAAGACATGGT+TGG 0.556461 2_2:-9041490 Msa0236090:CDS
TCTTTACTCATGGGACAGAT+GGG 0.557866 2_2:-9040526 Msa0236090:CDS
ATCCACTAGAGATTTAAGCT+TGG 0.559515 2_2:+9040460 None:intergenic
TGCTGAACAAGAAACTATGA+AGG 0.559817 2_2:-9040076 Msa0236090:CDS
AGATTGTTTCAAATGTAGGT+AGG 0.562268 2_2:+9039899 None:intergenic
TTATGGAATTGACTTTCCGA+TGG 0.567022 2_2:-9041316 Msa0236090:CDS
ATAGAATGATAGTGTTGGCT+TGG 0.568444 2_2:-9035921 Msa0236090:three_prime_UTR
TACTCTCCCCTATTATGGCA+TGG 0.572966 2_2:+9040213 None:intergenic
AAGACCTTATTGCAGTGACT+AGG 0.573479 2_2:+9040151 None:intergenic
CAAGAAAATATGTGTTACCT+GGG 0.577135 2_2:-9040580 Msa0236090:CDS
AATGACATCAGTGCTGGCTA+AGG 0.578895 2_2:+9035960 None:intergenic
GAGGGTGTATTCCTGATGAA+AGG 0.592786 2_2:-9040236 Msa0236090:CDS
CAACAAGTACATATGCATGA+AGG 0.605429 2_2:-9036020 Msa0236090:three_prime_UTR
CAAGTGCCATCTTTACTCAT+GGG 0.609109 2_2:-9040535 Msa0236090:CDS
GAGCTTCAGCATACTGCTGA+GGG 0.610339 2_2:+9040733 None:intergenic
GACAGATGGGTCTTGTGTTG+AGG 0.610700 2_2:-9040513 Msa0236090:CDS
TGGCTTGTTGGATATAATTG+GGG 0.614511 2_2:+9040765 None:intergenic
AGAGCTTCAGCATACTGCTG+AGG 0.615501 2_2:+9040732 None:intergenic
GCAAAACAAGATTGATTGGA+GGG 0.615989 2_2:-9040254 Msa0236090:CDS
ACTTGAACCTATTTAACTAG+AGG 0.619890 2_2:+9040014 None:intergenic
ATGTTTCATTGTTAGCAATG+TGG 0.624371 2_2:+9036086 None:intergenic
TGCAAAACAAGATTGATTGG+AGG 0.634424 2_2:-9040255 Msa0236090:CDS
GAAAGGCCATGCCATAATAG+GGG 0.638032 2_2:-9040219 Msa0236090:CDS
CCGTTGGTAAATCTTCCGGT+TGG 0.639272 2_2:+9041291 None:intergenic
AATGGCTCAGACATACTCAA+AGG 0.641841 2_2:-9041082 Msa0236090:CDS
ACTGCTGAGGGCTATAAATG+TGG 0.652295 2_2:+9040745 None:intergenic
AATTCGTATTGAGACAAGCA+TGG 0.663192 2_2:-9041032 Msa0236090:CDS
AAAGAACAGTGTCATTACAC+CGG 0.686044 2_2:+9035988 None:intergenic
GACTAGGTTCCAAGCCTCAG+TGG 0.693512 2_2:+9040167 None:intergenic
TGGAATCTATAATAAAGACA+TGG 0.699341 2_2:-9041494 Msa0236090:CDS
CAGCCCAATAGGCCTAACCC+AGG 0.713718 2_2:+9040563 None:intergenic
TTGGTGAGTTGATTGAACAG+TGG 0.720127 2_2:-9035902 None:intergenic
GGATGAATTCCATACCACTG+AGG 0.721325 2_2:-9040181 Msa0236090:CDS
CCAACCGGAAGATTTACCAA+CGG 0.775116 2_2:-9041291 Msa0236090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTATTTATTAAAA+AGG - chr2_2:9038651-9038670 Msa0236090:intron 0.0%
!! AATAATGAAATAAGTTTAAT+CGG - chr2_2:9037677-9037696 Msa0236090:intron 10.0%
!!! AAATTTTTTTACATTATGTT+TGG - chr2_2:9038464-9038483 Msa0236090:intron 10.0%
!!! TACTAAACTTTTTAAAATAA+TGG + chr2_2:9040024-9040043 None:intergenic 10.0%
!!! TTTCATTAGTTTTTTTTTTA+AGG + chr2_2:9040078-9040097 None:intergenic 10.0%
!! AAATAAATTTGTATTGTTAC+AGG - chr2_2:9036574-9036593 Msa0236090:intron 15.0%
!! AATAAATTTGTATTGTTACA+GGG - chr2_2:9036575-9036594 Msa0236090:intron 15.0%
!! ACTGTTTATAAATATGAATT+TGG + chr2_2:9037117-9037136 None:intergenic 15.0%
!! AATAATTACCATTTAAATTC+TGG + chr2_2:9037157-9037176 None:intergenic 15.0%
!! TAATTTATATGAAAGCTATT+TGG + chr2_2:9037559-9037578 None:intergenic 15.0%
!! ACAAAAGTAATTATTTGATT+TGG - chr2_2:9037786-9037805 Msa0236090:intron 15.0%
!! TTGTTCTCTATAATATAATA+TGG - chr2_2:9038283-9038302 Msa0236090:intron 15.0%
!! ATTATCTGTAATAAATGATA+TGG - chr2_2:9039824-9039843 Msa0236090:intron 15.0%
!!! AATTAGCTTTTATAGTTTTA+TGG - chr2_2:9040351-9040370 Msa0236090:intron 15.0%
!! AAGACATAAGTATTAATAAT+GGG + chr2_2:9040576-9040595 None:intergenic 15.0%
!!! TTAGATTTTCTACTTAGATA+TGG - chr2_2:9036009-9036028 Msa0236090:three_prime_UTR 20.0%
!! AAATGTAACTATAAACCTTA+TGG - chr2_2:9036190-9036209 Msa0236090:three_prime_UTR 20.0%
!! CATAATATGGATAAGTTAAA+AGG + chr2_2:9036288-9036307 None:intergenic 20.0%
!! TTTGATGTGATTACATTTAT+AGG + chr2_2:9037481-9037500 None:intergenic 20.0%
!!! AAACCTTTTTTTATTCATCA+AGG - chr2_2:9038388-9038407 Msa0236090:intron 20.0%
!!! AACCTTTTTTTATTCATCAA+GGG - chr2_2:9038389-9038408 Msa0236090:intron 20.0%
!!! TTTGGAAATTTTTAGTTTGA+AGG - chr2_2:9038482-9038501 Msa0236090:intron 20.0%
!!! TTGGAAATTTTTAGTTTGAA+GGG - chr2_2:9038483-9038502 Msa0236090:intron 20.0%
!! AATGTTAATAAACAAGTAGT+TGG + chr2_2:9040458-9040477 None:intergenic 20.0%
!! GAAGACATAAGTATTAATAA+TGG + chr2_2:9040577-9040596 None:intergenic 20.0%
!!! ATAGATTTTATTCTTAGAGA+TGG - chr2_2:9040643-9040662 Msa0236090:intron 20.0%
!!! TTTGTAATTACATTTTGCAT+AGG + chr2_2:9040819-9040838 None:intergenic 20.0%
!! AAATGTAATTACAAACCTTA+TGG - chr2_2:9040824-9040843 Msa0236090:CDS 20.0%
!! TGATAAGAACAAATTCATAT+AGG + chr2_2:9041174-9041193 None:intergenic 20.0%
! TGGAATCTATAATAAAGACA+TGG - chr2_2:9036029-9036048 Msa0236090:three_prime_UTR 25.0%
! ATCTATAATAAAGACATGGT+TGG - chr2_2:9036033-9036052 Msa0236090:three_prime_UTR 25.0%
! CTTACAAACAAGATAAGAAT+AGG + chr2_2:9036064-9036083 None:intergenic 25.0%
!! TTTATAGTTACATTTTGCAG+AGG + chr2_2:9036185-9036204 None:intergenic 25.0%
! TGAGATGAATCAAAAGTTTA+AGG + chr2_2:9036349-9036368 None:intergenic 25.0%
! GAACAATCAAAGAAATGAAA+AGG + chr2_2:9036548-9036567 None:intergenic 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_2:9036697-9036716 None:intergenic 25.0%
! AGAGTTATCTTTGAATTTAC+AGG - chr2_2:9036820-9036839 Msa0236090:intron 25.0%
! TTTGCTTTCACATTTATTGA+TGG - chr2_2:9036869-9036888 Msa0236090:intron 25.0%
!!! TGGTTTATAATAGAAGCATT+TGG - chr2_2:9036889-9036908 Msa0236090:intron 25.0%
! TGGAATTAAAAATGAATGCA+AGG + chr2_2:9037046-9037065 None:intergenic 25.0%
! TAAATTCTGGTAATCAGATT+CGG + chr2_2:9037144-9037163 None:intergenic 25.0%
! TCTGATTACCAGAATTTAAA+TGG - chr2_2:9037146-9037165 Msa0236090:intron 25.0%
!!! ATTTTACTGTGTTTGATTTC+AGG - chr2_2:9037220-9037239 Msa0236090:intron 25.0%
! GAAAAGATTGTTTCAAATGT+AGG + chr2_2:9037631-9037650 None:intergenic 25.0%
! AAATCAGATCAAACATAAGA+TGG + chr2_2:9037708-9037727 None:intergenic 25.0%
!! ATGTTTGATCTGATTTTTGA+TGG - chr2_2:9037712-9037731 Msa0236090:intron 25.0%
! ATCCAACAAATTGTTAATAG+AGG - chr2_2:9037915-9037934 Msa0236090:intron 25.0%
! TCCAACAAATTGTTAATAGA+GGG - chr2_2:9037916-9037935 Msa0236090:intron 25.0%
! GATAGTAGAGAGTAAAAATA+TGG - chr2_2:9038215-9038234 Msa0236090:intron 25.0%
!!! TGGAAATTTTTAGTTTGAAG+GGG - chr2_2:9038484-9038503 Msa0236090:intron 25.0%
! GTATTAATTATGTTTGAGAG+AGG + chr2_2:9038793-9038812 None:intergenic 25.0%
! AAATCAAATGAGGTAACTTT+AGG - chr2_2:9039309-9039328 Msa0236090:intron 25.0%
! AATCAAATGAGGTAACTTTA+GGG - chr2_2:9039310-9039329 Msa0236090:intron 25.0%
! AAAACCACAAACAAAAGATA+AGG + chr2_2:9039616-9039635 None:intergenic 25.0%
!! GACATATAATTTGAGATGAA+AGG - chr2_2:9039976-9039995 Msa0236090:three_prime_UTR 25.0%
!!! CTCTTTTCATTAGTTGTTTT+TGG + chr2_2:9040053-9040072 None:intergenic 25.0%
! ATTAAGAAGATGCCTTTAAA+TGG + chr2_2:9040128-9040147 None:intergenic 25.0%
!! GATTATATTATTGCTTGCTA+AGG - chr2_2:9040244-9040263 Msa0236090:CDS 25.0%
! AGAGTTTAAACTTAACTGAA+AGG - chr2_2:9040416-9040435 Msa0236090:CDS 25.0%
!! CAAATAAGAAAAAGGGTTTT+TGG + chr2_2:9040547-9040566 None:intergenic 25.0%
!!! AACCCTTTTTCTTATTTGAA+TGG - chr2_2:9040549-9040568 Msa0236090:CDS 25.0%
! GACCATTCAAATAAGAAAAA+GGG + chr2_2:9040554-9040573 None:intergenic 25.0%
! ATCTATAATCAAGTCATGAT+TGG - chr2_2:9040667-9040686 Msa0236090:intron 25.0%
! TTTGTTCTTATCACATTTCA+TGG - chr2_2:9041181-9041200 Msa0236090:intron 25.0%
!!! GATGAAGACATATTGGTTTT+TGG + chr2_2:9035942-9035961 None:intergenic 30.0%
ATAGCAAGATGAAGACATAT+TGG + chr2_2:9035949-9035968 None:intergenic 30.0%
! ATATGTCTTCATCTTGCTAT+CGG - chr2_2:9035949-9035968 Msa0236090:three_prime_UTR 30.0%
TTGGTTCCTTAATTATTTCC+TGG - chr2_2:9035972-9035991 Msa0236090:three_prime_UTR 30.0%
TCCTTAATTATTTCCTGGAT+TGG - chr2_2:9035977-9035996 Msa0236090:three_prime_UTR 30.0%
TATTTGCAACAATGTGTCAA+TGG - chr2_2:9036085-9036104 Msa0236090:three_prime_UTR 30.0%
TCTCCAAAGATAAAAAGACA+AGG + chr2_2:9036124-9036143 None:intergenic 30.0%
ACACTTCATGGTTCATAATA+TGG + chr2_2:9036301-9036320 None:intergenic 30.0%
GAACAAAGAAAAACACTTCA+TGG + chr2_2:9036313-9036332 None:intergenic 30.0%
TGCTTGTATTATGTGCATAT+TGG - chr2_2:9036704-9036723 Msa0236090:intron 30.0%
AAGCATTTGGTATATGTAAC+AGG - chr2_2:9036902-9036921 Msa0236090:intron 30.0%
TAACAGGCTTTACATGAAAT+TGG - chr2_2:9036918-9036937 Msa0236090:intron 30.0%
CAAGAAAATATGTGTTACCT+GGG - chr2_2:9036943-9036962 Msa0236090:intron 30.0%
!!! GTGTTTGATTTCAGGTTTTT+TGG - chr2_2:9037228-9037247 Msa0236090:intron 30.0%
!!! ATCAATCTTGTTTTGCAACA+AGG + chr2_2:9037265-9037284 None:intergenic 30.0%
TGTTGCAAAACAAGATTGAT+TGG - chr2_2:9037265-9037284 Msa0236090:intron 30.0%
ACAAGAAACTATGAAGGAAT+TGG - chr2_2:9037453-9037472 Msa0236090:intron 30.0%
ACTTGAACCTATTTAACTAG+AGG + chr2_2:9037512-9037531 None:intergenic 30.0%
ATTGTAACAGCATATGAGTA+GGG + chr2_2:9037583-9037602 None:intergenic 30.0%
TATTGTAACAGCATATGAGT+AGG + chr2_2:9037584-9037603 None:intergenic 30.0%
AGATTGTTTCAAATGTAGGT+AGG + chr2_2:9037627-9037646 None:intergenic 30.0%
! GTGTATCTGAAATGTTGATA+AGG - chr2_2:9037763-9037782 Msa0236090:intron 30.0%
! ATTTGGAACTGAAAATACGT+TGG - chr2_2:9037803-9037822 Msa0236090:intron 30.0%
! TTCTTAAGTTGTTGTCAAAG+AGG - chr2_2:9037870-9037889 Msa0236090:intron 30.0%
!! AATGGTTCTAAAGGAGAATT+AGG - chr2_2:9037984-9038003 Msa0236090:intron 30.0%
!! ATGGTTCTAAAGGAGAATTA+GGG - chr2_2:9037985-9038004 Msa0236090:intron 30.0%
AAAAAACAGTGATGAGAAAC+TGG - chr2_2:9038134-9038153 Msa0236090:intron 30.0%
AGCCCTTGATGAATAAAAAA+AGG + chr2_2:9038394-9038413 None:intergenic 30.0%
!!! AAATTTTTAGTTTGAAGGGG+AGG - chr2_2:9038487-9038506 Msa0236090:intron 30.0%
!!! AATTTTTAGTTTGAAGGGGA+GGG - chr2_2:9038488-9038507 Msa0236090:intron 30.0%
!! TAGGGTAATGACTTAGTTTT+AGG + chr2_2:9038961-9038980 None:intergenic 30.0%
AGTTTGCATTGTGCATAAAT+AGG + chr2_2:9039051-9039070 None:intergenic 30.0%
TGACTCAAAATTGAGTCTTT+GGG - chr2_2:9039080-9039099 Msa0236090:intron 30.0%
AAAACTTGGGAAATCAAATG+AGG - chr2_2:9039299-9039318 Msa0236090:intron 30.0%
TTGTAAGAACTCATTGATAG+TGG - chr2_2:9039505-9039524 Msa0236090:intron 30.0%
TTGATTCCTAGTTTAGATCT+AGG - chr2_2:9039648-9039667 Msa0236090:intron 30.0%
GCTTGTGTTTACTTTGATAT+TGG - chr2_2:9039690-9039709 Msa0236090:intron 30.0%
GAAATGTGATATGGAAGAAT+TGG + chr2_2:9040156-9040175 None:intergenic 30.0%
TTCTTCCATATCACATTTCA+AGG - chr2_2:9040157-9040176 Msa0236090:CDS 30.0%
! ATATTGATGCTTTGAGTTTG+AGG - chr2_2:9040189-9040208 Msa0236090:CDS 30.0%
AATCGCCTTTGTCAAATTAA+GGG + chr2_2:9040281-9040300 None:intergenic 30.0%
AAATCGCCTTTGTCAAATTA+AGG + chr2_2:9040282-9040301 None:intergenic 30.0%
GGACCATTCAAATAAGAAAA+AGG + chr2_2:9040555-9040574 None:intergenic 30.0%
TTATGTCTTCATTTCGTTCT+TGG - chr2_2:9040587-9040606 Msa0236090:CDS 30.0%
GCTAATGAATCCAGTAATTA+AGG + chr2_2:9040619-9040638 None:intergenic 30.0%
TGAGCTGAATCAAAAGTTTA+AGG + chr2_2:9041032-9041051 None:intergenic 30.0%
GAACCATTAATGTTTGCAAA+TGG + chr2_2:9041112-9041131 None:intergenic 30.0%
AATGGTTCAAACATACTCAA+AGG - chr2_2:9041124-9041143 Msa0236090:CDS 30.0%
AGAACAAATTCATATAGGCT+CGG + chr2_2:9041169-9041188 None:intergenic 30.0%
ACACACCTTAGCTAAATTAA+GGG + chr2_2:9041245-9041264 None:intergenic 30.0%
AACACACCTTAGCTAAATTA+AGG + chr2_2:9041246-9041265 None:intergenic 30.0%
TGTTTCATTGTTAGCAATGT+GGG + chr2_2:9041439-9041458 None:intergenic 30.0%
ATGTTTCATTGTTAGCAATG+TGG + chr2_2:9041440-9041459 None:intergenic 30.0%
! CATTGATAGAATGATAGTGT+TGG - chr2_2:9041597-9041616 Msa0236090:five_prime_UTR 30.0%
GCCAATCCAGGAAATAATTA+AGG + chr2_2:9035981-9036000 None:intergenic 35.0%
! GATAAAAAGACAAGGCACTT+GGG + chr2_2:9036116-9036135 None:intergenic 35.0%
! AGATAAAAAGACAAGGCACT+TGG + chr2_2:9036117-9036136 None:intergenic 35.0%
! GTGCCTTGTCTTTTTATCTT+TGG - chr2_2:9036118-9036137 Msa0236090:three_prime_UTR 35.0%
! TAGTTACATTTTGCAGAGGT+AGG + chr2_2:9036181-9036200 None:intergenic 35.0%
ATCGGAAAGTCAATTCCATA+AGG + chr2_2:9036208-9036227 None:intergenic 35.0%
! TTATGGAATTGACTTTCCGA+TGG - chr2_2:9036207-9036226 Msa0236090:three_prime_UTR 35.0%
! TATGGAATTGACTTTCCGAT+GGG - chr2_2:9036208-9036227 Msa0236090:three_prime_UTR 35.0%
CCATTAATGTTTGCAAATGG+TGG + chr2_2:9036426-9036445 None:intergenic 35.0%
CCACCATTTGCAAACATTAA+TGG - chr2_2:9036423-9036442 Msa0236090:intron 35.0%
GAGCCATTAATGTTTGCAAA+TGG + chr2_2:9036429-9036448 None:intergenic 35.0%
AATTCGTATTGAGACAAGCA+TGG - chr2_2:9036491-9036510 Msa0236090:intron 35.0%
!! TGGCTTGTTGGATATAATTG+GGG + chr2_2:9036761-9036780 None:intergenic 35.0%
!! GTGGCTTGTTGGATATAATT+GGG + chr2_2:9036762-9036781 None:intergenic 35.0%
!! TGTGGCTTGTTGGATATAAT+TGG + chr2_2:9036763-9036782 None:intergenic 35.0%
AGTGAAACACAAAGTTCAAG+TGG + chr2_2:9036849-9036868 None:intergenic 35.0%
GCAAGAAAATATGTGTTACC+TGG - chr2_2:9036942-9036961 Msa0236090:intron 35.0%
AAATATGTGTTACCTGGGTT+AGG - chr2_2:9036948-9036967 Msa0236090:intron 35.0%
TTCCAAGCTTAAATCTCTAG+TGG - chr2_2:9037061-9037080 Msa0236090:intron 35.0%
ATCCACTAGAGATTTAAGCT+TGG + chr2_2:9037066-9037085 None:intergenic 35.0%
TGCAAAACAAGATTGATTGG+AGG - chr2_2:9037268-9037287 Msa0236090:intron 35.0%
GCAAAACAAGATTGATTGGA+GGG - chr2_2:9037269-9037288 Msa0236090:intron 35.0%
TTTAGGCTTCACTTATCCAA+TGG - chr2_2:9037411-9037430 Msa0236090:intron 35.0%
GCAAGGTTCTTAATATCCAT+TGG + chr2_2:9037430-9037449 None:intergenic 35.0%
TCATAGTTTCTTGTTCAGCA+AGG + chr2_2:9037447-9037466 None:intergenic 35.0%
TGCTGAACAAGAAACTATGA+AGG - chr2_2:9037447-9037466 Msa0236090:intron 35.0%
CTTAGTGCCTCTAGTTAAAT+AGG - chr2_2:9037502-9037521 Msa0236090:intron 35.0%
ATTGAGAGAATTGAGACACT+GGG + chr2_2:9037840-9037859 None:intergenic 35.0%
TATTGAGAGAATTGAGACAC+TGG + chr2_2:9037841-9037860 None:intergenic 35.0%
GCCCTCTATTAACAATTTGT+TGG + chr2_2:9037920-9037939 None:intergenic 35.0%
ATCATTGTCCTCTATGGAAT+TGG + chr2_2:9037945-9037964 None:intergenic 35.0%
!! ATTCTCCTTTAGAACCATTG+TGG + chr2_2:9037983-9038002 None:intergenic 35.0%
TAAAGGAGAATTAGGGACAA+TGG - chr2_2:9037992-9038011 Msa0236090:intron 35.0%
AAAGGAGAATTAGGGACAAT+GGG - chr2_2:9037993-9038012 Msa0236090:intron 35.0%
TGTTTCTTTGCTAGCAATGT+GGG + chr2_2:9038251-9038270 None:intergenic 35.0%
ATGTTTCTTTGCTAGCAATG+TGG + chr2_2:9038252-9038271 None:intergenic 35.0%
TATCAACTAACGTAGTTGCT+TGG - chr2_2:9038315-9038334 Msa0236090:intron 35.0%
!!! ATTTTTAGTTTGAAGGGGAG+GGG - chr2_2:9038489-9038508 Msa0236090:intron 35.0%
!! TGTTTGAGAGAGGTTTTGAT+GGG + chr2_2:9038783-9038802 None:intergenic 35.0%
!! ATGTTTGAGAGAGGTTTTGA+TGG + chr2_2:9038784-9038803 None:intergenic 35.0%
!!! AGTTTTAGGACTTAGTCTCT+AGG + chr2_2:9038947-9038966 None:intergenic 35.0%
! AAGTCTCTCATGTTTTCCTT+TGG + chr2_2:9038994-9039013 None:intergenic 35.0%
GTGACTCAAAATTGAGTCTT+TGG - chr2_2:9039079-9039098 Msa0236090:intron 35.0%
! TGAAGAATCGTGACATGTTT+TGG - chr2_2:9039107-9039126 Msa0236090:intron 35.0%
AATTTCTGATGTCGAATGCA+TGG - chr2_2:9039142-9039161 Msa0236090:intron 35.0%
CAACTGTAAAAATCGTGTCA+CGG + chr2_2:9039225-9039244 None:intergenic 35.0%
! ACACGATTTTTACAGTTGCA+GGG - chr2_2:9039227-9039246 Msa0236090:intron 35.0%
TCTTTGATTAGGGTTCTCTT+GGG - chr2_2:9039340-9039359 Msa0236090:intron 35.0%
! CAATGATTTTCACTCAACCA+AGG + chr2_2:9039385-9039404 None:intergenic 35.0%
! TCATTGAGTGTCTTGTTCAT+TGG - chr2_2:9039399-9039418 Msa0236090:intron 35.0%
TCTTGTTCATTGGTGAGATT+GGG - chr2_2:9039409-9039428 Msa0236090:intron 35.0%
ATTGGTGAGATTGGGAAAAT+GGG - chr2_2:9039417-9039436 Msa0236090:intron 35.0%
TGGGAAAATGGGTAGAAATT+AGG - chr2_2:9039428-9039447 Msa0236090:intron 35.0%
CAAGAAATGTTTACCCAGTT+CGG + chr2_2:9039572-9039591 None:intergenic 35.0%
!! CTCTCCTTATCTTTTGTTTG+TGG - chr2_2:9039609-9039628 Msa0236090:intron 35.0%
CCAATACAAACAATGATGTG+TGG + chr2_2:9039734-9039753 None:intergenic 35.0%
CCACACATCATTGTTTGTAT+TGG - chr2_2:9039731-9039750 Msa0236090:intron 35.0%
GACGTCAATTGTTGTGAATT+CGG + chr2_2:9039770-9039789 None:intergenic 35.0%
AGTCTAATTCCACCTTTAGA+GGG - chr2_2:9040100-9040119 Msa0236090:CDS 35.0%
ATGTGATATGGAAGAATTGG+AGG + chr2_2:9040153-9040172 None:intergenic 35.0%
TAGCTCCTTGAAATGTGATA+TGG + chr2_2:9040165-9040184 None:intergenic 35.0%
! ATTGCTTGCTAAGGAATTTG+TGG - chr2_2:9040253-9040272 Msa0236090:CDS 35.0%
!!! TATAGTTTTATGGCATGCCA+TGG - chr2_2:9040361-9040380 Msa0236090:intron 35.0%
!!! ATAGTTTTATGGCATGCCAT+GGG - chr2_2:9040362-9040381 Msa0236090:intron 35.0%
TTGGTTGGATCCTTAATTAC+TGG - chr2_2:9040606-9040625 Msa0236090:intron 35.0%
TTTCCAGAGAAGAGAAGAAT+AGG + chr2_2:9040698-9040717 None:intergenic 35.0%
TCTCCAAAGATGAATACACA+AGG + chr2_2:9040758-9040777 None:intergenic 35.0%
GGAGATTCTTTATCTGATAG+TGG - chr2_2:9040773-9040792 Msa0236090:CDS 35.0%
! ATCGGAAAATCGATTCCATA+AGG + chr2_2:9040842-9040861 None:intergenic 35.0%
!! TTATGGAATCGATTTTCCGA+TGG - chr2_2:9040841-9040860 Msa0236090:CDS 35.0%
!! TATGGAATCGATTTTCCGAT+GGG - chr2_2:9040842-9040861 Msa0236090:CDS 35.0%
GAACAACGAAAAACACTTAC+TGG + chr2_2:9040996-9041015 None:intergenic 35.0%
CCATTAATGTTTGCAAATGG+TGG + chr2_2:9036426-9036445 None:intergenic 35.0%
CCACCATTTGCAAACATTAA+TGG - chr2_2:9036423-9036442 Msa0236090:intron 35.0%
GAGTACATTATTGCTCAAGA+AGG - chr2_2:9041205-9041224 Msa0236090:intron 35.0%
GCTCAAGAAGGAATATAAAG+TGG - chr2_2:9041217-9041236 Msa0236090:intron 35.0%
CAACAAGTACATATGCATGA+AGG - chr2_2:9041503-9041522 Msa0236090:exon 35.0%
! AAAGAACAGTGTCATTACAC+CGG + chr2_2:9041538-9041557 None:intergenic 35.0%
TAATGAAATGACATCAGTGC+TGG + chr2_2:9041572-9041591 None:intergenic 35.0%
!! ATAGAATGATAGTGTTGGCT+TGG - chr2_2:9041602-9041621 Msa0236090:five_prime_UTR 35.0%
GGAGACTCTTTATCTGATAG+TGG - chr2_2:9036139-9036158 Msa0236090:three_prime_UTR 40.0%
! TACATTTTGCAGAGGTAGGA+AGG + chr2_2:9036177-9036196 None:intergenic 40.0%
AATGGCTCAGACATACTCAA+AGG - chr2_2:9036441-9036460 Msa0236090:intron 40.0%
! AAAGGTGTGAACTATGCATC+TGG - chr2_2:9036459-9036478 Msa0236090:intron 40.0%
TATTGAGACAAGCATGGCTA+AGG - chr2_2:9036497-9036516 Msa0236090:intron 40.0%
!! ACAGGGTTTTGTCATCAGTT+TGG - chr2_2:9036592-9036611 Msa0236090:intron 40.0%
!! CAGGGTTTTGTCATCAGTTT+GGG - chr2_2:9036593-9036612 Msa0236090:intron 40.0%
TCTCAAATTGCTAGCAGACT+TGG - chr2_2:9036647-9036666 Msa0236090:intron 40.0%
CAAGTGCCATCTTTACTCAT+GGG - chr2_2:9036988-9037007 Msa0236090:intron 40.0%
ATCTGTCCCATGAGTAAAGA+TGG + chr2_2:9036997-9037016 None:intergenic 40.0%
ATCTTTACTCATGGGACAGA+TGG - chr2_2:9036996-9037015 Msa0236090:intron 40.0%
TCTTTACTCATGGGACAGAT+GGG - chr2_2:9036997-9037016 Msa0236090:intron 40.0%
ATGAAAGGCCATGCCATAAT+AGG - chr2_2:9037302-9037321 Msa0236090:intron 40.0%
TGAAAGGCCATGCCATAATA+GGG - chr2_2:9037303-9037322 Msa0236090:intron 40.0%
ACACATACTCTCCCCTATTA+TGG + chr2_2:9037318-9037337 None:intergenic 40.0%
!! ATAGGGGAGAGTATGTGTTT+TGG - chr2_2:9037320-9037339 Msa0236090:intron 40.0%
!! TAGGGGAGAGTATGTGTTTT+GGG - chr2_2:9037321-9037340 Msa0236090:intron 40.0%
AAGACCTTATTGCAGTGACT+AGG + chr2_2:9037375-9037394 None:intergenic 40.0%
TGAGACACTGGGTAAATGTA+TGG + chr2_2:9037829-9037848 None:intergenic 40.0%
GTAGTCATCATTGTCCTCTA+TGG + chr2_2:9037951-9037970 None:intergenic 40.0%
ACTACAATCTGCAACCACAA+TGG - chr2_2:9037966-9037985 Msa0236090:intron 40.0%
!! TGCAACCACAATGGTTCTAA+AGG - chr2_2:9037975-9037994 Msa0236090:intron 40.0%
ATGCTACACCTTTGCACAAA+TGG - chr2_2:9038075-9038094 Msa0236090:intron 40.0%
GTTATCCACCATTTGTGCAA+AGG + chr2_2:9038086-9038105 None:intergenic 40.0%
CTCTACTATCACACGTCATT+TGG + chr2_2:9038205-9038224 None:intergenic 40.0%
!! TAACGTAGTTGCTTGGTGTT+TGG - chr2_2:9038322-9038341 Msa0236090:intron 40.0%
CTTGCTGGATCAATGTTGTT+GGG + chr2_2:9038355-9038374 None:intergenic 40.0%
!! CTGTAGTTTCTGGTCTTGTT+GGG - chr2_2:9038412-9038431 Msa0236090:intron 40.0%
TCCTTTGGTACTCTCTAGTA+GGG + chr2_2:9038979-9038998 None:intergenic 40.0%
TTCCTTTGGTACTCTCTAGT+AGG + chr2_2:9038980-9038999 None:intergenic 40.0%
CGACATCAGAAATTGTGACA+CGG + chr2_2:9039136-9039155 None:intergenic 40.0%
! GACACGATTTTTACAGTTGC+AGG - chr2_2:9039226-9039245 Msa0236090:intron 40.0%
!! GTGTTTCTGTCCAGATTTTG+AGG - chr2_2:9039260-9039279 Msa0236090:intron 40.0%
TTGAAGCTCTCCTCAAAATC+TGG + chr2_2:9039273-9039292 None:intergenic 40.0%
AGCTTCAAGAGAGGAAAACT+TGG - chr2_2:9039285-9039304 Msa0236090:intron 40.0%
GCTTCAAGAGAGGAAAACTT+GGG - chr2_2:9039286-9039305 Msa0236090:intron 40.0%
!! ATGAGGTAACTTTAGGGTTG+AGG - chr2_2:9039316-9039335 Msa0236090:intron 40.0%
!! TGAGGTAACTTTAGGGTTGA+GGG - chr2_2:9039317-9039336 Msa0236090:intron 40.0%
GTCTTTGATTAGGGTTCTCT+TGG - chr2_2:9039339-9039358 Msa0236090:intron 40.0%
CTTTGATTAGGGTTCTCTTG+GGG - chr2_2:9039341-9039360 Msa0236090:intron 40.0%
GGGAAACATTGTAAACACCT+TGG - chr2_2:9039365-9039384 Msa0236090:intron 40.0%
! GTCTTGTTCATTGGTGAGAT+TGG - chr2_2:9039408-9039427 Msa0236090:intron 40.0%
CATTGGTGAGATTGGGAAAA+TGG - chr2_2:9039416-9039435 Msa0236090:intron 40.0%
CGAACTGGGTAAACATTTCT+TGG - chr2_2:9039570-9039589 Msa0236090:intron 40.0%
ACAGCACCTAGATCTAAACT+AGG + chr2_2:9039657-9039676 None:intergenic 40.0%
AACAATGATGTGTGGAGCAA+AGG + chr2_2:9039726-9039745 None:intergenic 40.0%
CAATTCACTCCTATGTCACA+CGG + chr2_2:9039795-9039814 None:intergenic 40.0%
GAGTCTAATTCCACCTTTAG+AGG - chr2_2:9040099-9040118 Msa0236090:CDS 40.0%
CTTTAAATGGAGCCCTCTAA+AGG + chr2_2:9040115-9040134 None:intergenic 40.0%
! CTTTAGAGGGCTCCATTTAA+AGG - chr2_2:9040113-9040132 Msa0236090:CDS 40.0%
! TGGCACCCTTAATTTGACAA+AGG - chr2_2:9040273-9040292 Msa0236090:CDS 40.0%
GTCTTCATTTCGTTCTTGGT+TGG - chr2_2:9040591-9040610 Msa0236090:CDS 40.0%
TTGCCTATTCTTCTCTTCTC+TGG - chr2_2:9040692-9040711 Msa0236090:intron 40.0%
TGTTTGCCACAATGTGTCAA+TGG - chr2_2:9040719-9040738 Msa0236090:CDS 40.0%
GTTTGCCACAATGTGTCAAT+GGG - chr2_2:9040720-9040739 Msa0236090:CDS 40.0%
GATTTCCCATTGACACATTG+TGG + chr2_2:9040728-9040747 None:intergenic 40.0%
! GATGAATACACAAGGCACTT+GGG + chr2_2:9040750-9040769 None:intergenic 40.0%
! AGATGAATACACAAGGCACT+TGG + chr2_2:9040751-9040770 None:intergenic 40.0%
GTGCCTTGTGTATTCATCTT+TGG - chr2_2:9040752-9040771 Msa0236090:CDS 40.0%
CCAACTGGAAGATTTACCAA+CGG - chr2_2:9040866-9040885 Msa0236090:CDS 40.0%
TTCATTGAAGCTCAGCTTCT+TGG - chr2_2:9041067-9041086 Msa0236090:CDS 40.0%
TGGCACCCTTAATTTAGCTA+AGG - chr2_2:9041237-9041256 Msa0236090:intron 40.0%
TGCATGAAGGTTTCAATAGC+CGG - chr2_2:9041516-9041535 Msa0236090:exon 40.0%
! GTCTTCATCTTGCTATCGGT+TGG - chr2_2:9035953-9035972 Msa0236090:three_prime_UTR 45.0%
CTAATGAAGCTAGCCAATCC+AGG + chr2_2:9035993-9036012 None:intergenic 45.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_2:9036232-9036251 Msa0236090:intron 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_2:9036239-9036258 None:intergenic 45.0%
GTCAATTGAAGTTCGACCGT+TGG + chr2_2:9036251-9036270 None:intergenic 45.0%
TTGATTGCAGCTCAGCTTCT+TGG - chr2_2:9036384-9036403 Msa0236090:intron 45.0%
! GGGCTATAAATGTGGCTTGT+TGG + chr2_2:9036773-9036792 None:intergenic 45.0%
ACTGCTGAGGGCTATAAATG+TGG + chr2_2:9036781-9036800 None:intergenic 45.0%
! TTACCTGGGTTAGGCCTATT+GGG - chr2_2:9036957-9036976 Msa0236090:intron 45.0%
CCATGAGTAAAGATGGCACT+TGG + chr2_2:9036990-9037009 None:intergenic 45.0%
CCAAGTGCCATCTTTACTCA+TGG - chr2_2:9036987-9037006 Msa0236090:intron 45.0%
! GAGGGTGTATTCCTGATGAA+AGG - chr2_2:9037287-9037306 Msa0236090:intron 45.0%
TTATGGCATGGCCTTTCATC+AGG + chr2_2:9037301-9037320 None:intergenic 45.0%
GAAAGGCCATGCCATAATAG+GGG - chr2_2:9037304-9037323 Msa0236090:intron 45.0%
TACTCTCCCCTATTATGGCA+TGG + chr2_2:9037313-9037332 None:intergenic 45.0%
GGATGAATTCCATACCACTG+AGG - chr2_2:9037342-9037361 Msa0236090:intron 45.0%
AATTCCATACCACTGAGGCT+TGG - chr2_2:9037347-9037366 Msa0236090:intron 45.0%
GGAACCTAGTCACTGCAATA+AGG - chr2_2:9037368-9037387 Msa0236090:intron 45.0%
AGTTGTTGTCAAAGAGGAGC+TGG - chr2_2:9037876-9037895 Msa0236090:intron 45.0%
CTACACCTTTGCACAAATGG+TGG - chr2_2:9038078-9038097 Msa0236090:intron 45.0%
CCTTGCTGGATCAATGTTGT+TGG + chr2_2:9038356-9038375 None:intergenic 45.0%
CCAACAACATTGATCCAGCA+AGG - chr2_2:9038353-9038372 Msa0236090:intron 45.0%
TTGTAGTTTCGATGCCTTGC+TGG + chr2_2:9038370-9038389 None:intergenic 45.0%
TCATCAAGGGCTGTAGTTTC+TGG - chr2_2:9038402-9038421 Msa0236090:intron 45.0%
!! GCTGTAGTTTCTGGTCTTGT+TGG - chr2_2:9038411-9038430 Msa0236090:intron 45.0%
!! TTCTGGTCTTGTTGGGTCAA+TGG - chr2_2:9038419-9038438 Msa0236090:intron 45.0%
TCTTGTTGGGTCAATGGCAT+TGG - chr2_2:9038425-9038444 Msa0236090:intron 45.0%
CTTGTTGGGTCAATGGCATT+GGG - chr2_2:9038426-9038445 Msa0236090:intron 45.0%
GGGAGGGGTGGAAAATATAT+GGG - chr2_2:9038504-9038523 Msa0236090:intron 45.0%
!! ACCCTACTAGAGAGTACCAA+AGG - chr2_2:9038975-9038994 Msa0236090:intron 45.0%
TCTGATGTCGAATGCATGGT+TGG - chr2_2:9039146-9039165 Msa0236090:intron 45.0%
AGGCAAAACGTGACACGATT+TGG - chr2_2:9039175-9039194 Msa0236090:intron 45.0%
GGCAAAACGTGACACGATTT+GGG - chr2_2:9039176-9039195 Msa0236090:intron 45.0%
! GGGAAATCGTGACACGATTT+TGG - chr2_2:9039196-9039215 Msa0236090:intron 45.0%
TTTGAGGAGAGCTTCAAGAG+AGG - chr2_2:9039276-9039295 Msa0236090:intron 45.0%
AGGGTTGAGGGTCTTTGATT+AGG - chr2_2:9039329-9039348 Msa0236090:intron 45.0%
GGGTTGAGGGTCTTTGATTA+GGG - chr2_2:9039330-9039349 Msa0236090:intron 45.0%
CGTGTGACATAGGAGTGAAT+TGG - chr2_2:9039793-9039812 Msa0236090:intron 45.0%
! TAAATGGAGCCCTCTAAAGG+TGG + chr2_2:9040112-9040131 None:intergenic 45.0%
CCTTCATCTCTATCTTCCCA+TGG + chr2_2:9040381-9040400 None:intergenic 45.0%
CCATGGGAAGATAGAGATGA+AGG - chr2_2:9040378-9040397 Msa0236090:CDS 45.0%
AATCTTCCAGTTGGACCCAT+CGG + chr2_2:9040860-9040879 None:intergenic 45.0%
! CCGTTGGTAAATCTTCCAGT+TGG + chr2_2:9040869-9040888 None:intergenic 45.0%
!! AATGACATCAGTGCTGGCTA+AGG + chr2_2:9041566-9041585 None:intergenic 45.0%
!! TATAATTCATATAATAATTT+AGG - chr2_2:9037394-9037413 Msa0236090:intron 5.0%
!!! AATAAATAATTTTTTTTTGA+AGG + chr2_2:9038647-9038666 None:intergenic 5.0%
!!! ATAATTTTTTTTTTAAGAAT+AGG + chr2_2:9038880-9038899 None:intergenic 5.0%
! AATCTTCCGGTTGGTCCCAT+CGG + chr2_2:9036226-9036245 None:intergenic 50.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_2:9036235-9036254 None:intergenic 50.0%
GAGCTTCAGCATACTGCTGA+GGG + chr2_2:9036793-9036812 None:intergenic 50.0%
AGAGCTTCAGCATACTGCTG+AGG + chr2_2:9036794-9036813 None:intergenic 50.0%
! GTTACCTGGGTTAGGCCTAT+TGG - chr2_2:9036956-9036975 Msa0236090:intron 50.0%
! GACAGATGGGTCTTGTGTTG+AGG - chr2_2:9037010-9037029 Msa0236090:intron 50.0%
GAGGGCTTCCAATTCCATAG+AGG - chr2_2:9037934-9037953 Msa0236090:intron 50.0%
! TTGGGTCAATGGCATTGGGA+TGG - chr2_2:9038430-9038449 Msa0236090:intron 50.0%
!! TTTAGTTTGAAGGGGAGGGG+TGG - chr2_2:9038492-9038511 Msa0236090:intron 50.0%
GGGGAGGGGTGGAAAATATA+TGG - chr2_2:9038503-9038522 Msa0236090:intron 50.0%
GGTAGACATGTGCACTTGCA+TGG + chr2_2:9038926-9038945 None:intergenic 50.0%
TGATTAGGGTTCTCTTGGGG+TGG - chr2_2:9039344-9039363 Msa0236090:intron 50.0%
GATTAGGGTTCTCTTGGGGT+GGG - chr2_2:9039345-9039364 Msa0236090:intron 50.0%
!! AGGTCAAGTTGGACCGAACT+GGG - chr2_2:9039556-9039575 Msa0236090:intron 50.0%
TTCACTCCTATGTCACACGG+TGG + chr2_2:9039792-9039811 None:intergenic 50.0%
! GATTTTCCGATGGGTCCAAC+TGG - chr2_2:9040851-9040870 Msa0236090:CDS 50.0%
GACTTTCCGATGGGACCAAC+CGG - chr2_2:9036217-9036236 Msa0236090:intron 55.0%
AACTATGCATCTGGCGCAGC+TGG - chr2_2:9036468-9036487 Msa0236090:intron 55.0%
CACTTGGAGTGCAGCCCAAT+AGG + chr2_2:9036974-9036993 None:intergenic 55.0%
GGTTCCAAGCCTCAGTGGTA+TGG + chr2_2:9037354-9037373 None:intergenic 55.0%
GACTAGGTTCCAAGCCTCAG+TGG + chr2_2:9037359-9037378 None:intergenic 55.0%
! CGTGTCACGTTTTGCCTCCA+GGG + chr2_2:9039172-9039191 None:intergenic 55.0%
! TCGTGTCACGTTTTGCCTCC+AGG + chr2_2:9039173-9039192 None:intergenic 55.0%
ATCAATCTCTCCCCCAGAGC+AGG - chr2_2:9039536-9039555 Msa0236090:intron 55.0%
TCCAACTTGACCTGCTCTGG+GGG + chr2_2:9039549-9039568 None:intergenic 55.0%
GTCCAACTTGACCTGCTCTG+GGG + chr2_2:9039550-9039569 None:intergenic 55.0%
GGTCCAACTTGACCTGCTCT+GGG + chr2_2:9039551-9039570 None:intergenic 55.0%
!! CAGGTCAAGTTGGACCGAAC+TGG - chr2_2:9039555-9039574 Msa0236090:intron 55.0%
TGACGTCCACCGTGTGACAT+AGG - chr2_2:9039783-9039802 Msa0236090:intron 55.0%
!! GACATCAGTGCTGGCTAAGG+AGG + chr2_2:9041563-9041582 None:intergenic 55.0%
CAGCCCAATAGGCCTAACCC+AGG + chr2_2:9036963-9036982 None:intergenic 60.0%
! GTCGAATGCATGGTTGGCCC+TGG - chr2_2:9039152-9039171 Msa0236090:intron 60.0%
! GAATGCATGGTTGGCCCTGG+AGG - chr2_2:9039155-9039174 Msa0236090:intron 60.0%
TCCCCCAGAGCAGGTCAAGT+TGG - chr2_2:9039545-9039564 Msa0236090:intron 60.0%
CGGTCCAACTTGACCTGCTC+TGG + chr2_2:9039552-9039571 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9035903 9041642 9035903 ID=Msa0236090;Name=Msa0236090
chr2_2 mRNA 9035903 9041642 9035903 ID=Msa0236090-mRNA-1;Parent=Msa0236090;Name=Msa0236090-mRNA-1;_AED=0.31;_eAED=0.31;_QI=125|1|1|1|0.8|0.66|6|508|380
chr2_2 exon 9035903 9036231 9035903 ID=Msa0236090-mRNA-1:exon:3928;Parent=Msa0236090-mRNA-1
chr2_2 exon 9039847 9040303 9039847 ID=Msa0236090-mRNA-1:exon:3927;Parent=Msa0236090-mRNA-1
chr2_2 exon 9040378 9040621 9040378 ID=Msa0236090-mRNA-1:exon:3926;Parent=Msa0236090-mRNA-1
chr2_2 exon 9040704 9040949 9040704 ID=Msa0236090-mRNA-1:exon:3925;Parent=Msa0236090-mRNA-1
chr2_2 exon 9041027 9041151 9041027 ID=Msa0236090-mRNA-1:exon:3924;Parent=Msa0236090-mRNA-1
chr2_2 exon 9041268 9041642 9041268 ID=Msa0236090-mRNA-1:exon:3923;Parent=Msa0236090-mRNA-1
chr2_2 five_prime_UTR 9041518 9041642 9041518 ID=Msa0236090-mRNA-1:five_prime_utr;Parent=Msa0236090-mRNA-1
chr2_2 CDS 9041268 9041517 9041268 ID=Msa0236090-mRNA-1:cds;Parent=Msa0236090-mRNA-1
chr2_2 CDS 9041027 9041151 9041027 ID=Msa0236090-mRNA-1:cds;Parent=Msa0236090-mRNA-1
chr2_2 CDS 9040704 9040949 9040704 ID=Msa0236090-mRNA-1:cds;Parent=Msa0236090-mRNA-1
chr2_2 CDS 9040378 9040621 9040378 ID=Msa0236090-mRNA-1:cds;Parent=Msa0236090-mRNA-1
chr2_2 CDS 9040026 9040303 9040026 ID=Msa0236090-mRNA-1:cds;Parent=Msa0236090-mRNA-1
chr2_2 three_prime_UTR 9039847 9040025 9039847 ID=Msa0236090-mRNA-1:three_prime_utr;Parent=Msa0236090-mRNA-1
chr2_2 three_prime_UTR 9035903 9036231 9035903 ID=Msa0236090-mRNA-1:three_prime_utr;Parent=Msa0236090-mRNA-1
Gene Sequence

>Msa0236090

ATGGAATCTATAATAAAGACATGGTTGGTGTTGCCTATTCTTATCTTGTTTGTAAGCTATTTGCAACAATGTGTCAATGGAAAATCCCAAGTGCCTTGTCTTTTTATCTTTGGAGACTCTTTATCTGATAGTGGAAACAACAATAACCTTCCTACCTCTGCAAAATGTAACTATAAACCTTATGGAATTGACTTTCCGATGGGACCAACCGGAAGATTTACCAACGGTCGAACTTCAATTGACATAATAACTCAGCTTCTTGGCTTTGAGAACTTCATTCCACCATTTGCAAACATTAATGGCTCAGACATACTCAAAGGTGTGAACTATGCATCTGGCGCAGCTGGAATTCGTATTGAGACAAGCATGGCTAAGGGTTTTGTCATCAGTTTGGGATTACAGTTAAAAAATCACAAAGTTATAGTTTCTCAAATTGCTAGCAGACTTGGAAGTCTTAACAAAGCTCAAGAATACCTTAACAAATGCTTGTATTATGTGCATATTGGTAGTAATGATTACATAAACAATTATTTTCTTCCCCAATTATATCCAACAAGCCACATTTATAGCCCTCAGCAGTATGCTGAAGCTCTAATTGAAGAGTTATCTTTGAATTTACAGGCTTTACATGAAATTGGAGCAAGAAAATATGTGTTACCTGGGTTAGGCCTATTGGGCTGCACTCCAAGTGCCATCTTTACTCATGGGACAGATGGGTCTTGTGTTGAGGAGCAAAATGACCTTGCATTCATTTTTAATTCCAAGCTTAAATCTCTAGTGGATCATTTCAATAATAAGTTCTCTGCTGATTCCAAATTCATATTTATAAACAGTACATCCGAATCTGATTACCAGAATTTAAATGGTTTTTTGGTTGCAAATGCTCCTTGTTGCAAAACAAGATTGATTGGAGGGTGTATTCCTGATGAAAGGCCATGCCATAATAGGGGAGAGTATGTGTTTTGGGATGAATTCCATACCACTGAGGCTTGGAACCTAGTCACTGCAATAAGGTCTTATAATTCATATAATAATTTAGGCTTCACTTATCCAATGGATATTAAGAACCTTGCTGAACAAGAAACTATGAAGGAATTGGAGCCTATAAATGTAATCACATCAAAGCTTAGTGCCTCTAGTTAA
Protein sequence

>Msa0236090

MESIIKTWLVLPILILFVSYLQQCVNGKSQVPCLFIFGDSLSDSGNNNNLPTSAKCNYKPYGIDFPMGPTGRFTNGRTSIDIITQLLGFENFIPPFANINGSDILKGVNYASGAAGIRIETSMAKGFVISLGLQLKNHKVIVSQIASRLGSLNKAQEYLNKCLYYVHIGSNDYINNYFLPQLYPTSHIYSPQQYAEALIEELSLNLQALHEIGARKYVLPGLGLLGCTPSAIFTHGTDGSCVEEQNDLAFIFNSKLKSLVDHFNNKFSADSKFIFINSTSESDYQNLNGFLVANAPCCKTRLIGGCIPDERPCHNRGEYVFWDEFHTTEAWNLVTAIRSYNSYNNLGFTYPMDIKNLAEQETMKELEPINVITSKLSASS*