AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811710 MtrunA17_Chr5g0428201 98.708 542 7 0 1 542 1 542 0.0 1100
Msa0811710 MtrunA17_Chr3g0141051 79.963 539 97 4 1 539 1 528 0.0 879
Msa0811710 MtrunA17_Chr4g0049411 64.829 526 174 5 21 539 5 526 0.0 656
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811710 AT1G58290.1 82.403 466 79 2 75 540 79 541 0.0 790
Msa0811710 AT1G09940.1 71.795 546 132 8 1 540 1 530 0.0 767
Msa0811710 AT2G31250.1 64.301 465 152 6 80 540 70 524 0.0 581

Find 122 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAATGTTTAGGTAAAA+TGG 0.148078 5_3:-41012663 Msa0811710:CDS
TTCCAACCATTAAGAAATTA+AGG 0.165771 5_3:-41012718 Msa0811710:CDS
CGCTTCATCTTCTGATGTTT+TGG 0.184621 5_3:-41014888 Msa0811710:CDS
AAGAAGAAGAACAACATTTA+AGG 0.190377 5_3:+41015005 None:intergenic
ACGCAATCACCGTCGGTAAA+AGG 0.192964 5_3:-41013336 Msa0811710:CDS
TGAAAACCCTTACCCTTAAA+AGG 0.206716 5_3:-41012350 Msa0811710:three_prime_UTR
ATAAGCCCTTAATTTCTTAA+TGG 0.214661 5_3:+41012712 None:intergenic
TGAAACTGAGGTTTCTGTTT+TGG 0.219895 5_3:-41012471 Msa0811710:CDS
TTCAATCGGAATTAGTAAAT+TGG 0.224632 5_3:-41012147 Msa0811710:three_prime_UTR
GGGCTTATGCTGAAAGATTA+AGG 0.231515 5_3:-41012697 Msa0811710:CDS
TTACTAATTCCGATTGAAAA+AGG 0.233887 5_3:+41012152 None:intergenic
TAGTTTCTATGGTGCTAAAT+TGG 0.244077 5_3:-41015038 Msa0811710:CDS
AGGAGCAGCATTGTCGTTAT+TGG 0.244642 5_3:-41014208 Msa0811710:CDS
ACACATGAACCTACATTTCT+AGG 0.267827 5_3:+41012899 None:intergenic
AGACAATAATATTAGTAATA+AGG 0.278668 5_3:+41015098 None:intergenic
GCTGTTTCAACTAGTTTCTA+TGG 0.301919 5_3:-41015049 Msa0811710:CDS
GCAGAACTTGAGAAATGTTT+AGG 0.303247 5_3:-41012671 Msa0811710:CDS
GCTCTAGGCCATTCTGCTTC+TGG 0.309364 5_3:+41014136 None:intergenic
AGTTATTGGAGCTGGCAAAA+TGG 0.324891 5_3:-41013200 Msa0811710:CDS
GGCTCTATTTACGAGTTTAG+AGG 0.327054 5_3:+41012187 None:intergenic
TCCTTTAGCAAGCGAAGAAA+TGG 0.328100 5_3:-41012954 Msa0811710:CDS
ATATATCTCCATTCGGTTGC+AGG 0.334402 5_3:+41014060 None:intergenic
GTTATTGGAGCTGGCAAAAT+GGG 0.335933 5_3:-41013199 Msa0811710:CDS
AAAGCAGGACAAGGAGTTAA+TGG 0.352248 5_3:-41013391 Msa0811710:CDS
TCCAACCATTAAGAAATTAA+GGG 0.367076 5_3:-41012717 Msa0811710:CDS
GGAGCAGCATTGTCGTTATT+GGG 0.368509 5_3:-41014207 Msa0811710:CDS
GATAATTTACAAACCCCTTT+CGG 0.370528 5_3:-41013068 Msa0811710:CDS
TCTTAGCCTATCCTCTTTGT+TGG 0.373400 5_3:+41012817 None:intergenic
GAGAAATGTTTAGGTAAAAT+GGG 0.376514 5_3:-41012662 Msa0811710:CDS
AGTGATCATCGGCGAAGAAT+CGG 0.380975 5_3:-41012777 Msa0811710:CDS
AATGCAAGAATGCTAGTTAT+TGG 0.382486 5_3:-41013214 Msa0811710:CDS
CGATGATCTTGAGTCTGTTA+AGG 0.386630 5_3:-41012876 Msa0811710:CDS
GGTCTTGATTCTCTTGTAAT+GGG 0.391946 5_3:-41013451 Msa0811710:CDS
GACCTGCTGATACTTCAAAA+AGG 0.396196 5_3:+41013470 None:intergenic
CAACATCAATTATTTCTTCA+CGG 0.396997 5_3:+41013092 None:intergenic
GGCTTATGCTGAAAGATTAA+GGG 0.398014 5_3:-41012696 Msa0811710:CDS
GCCCTTAATTTCTTAATGGT+TGG 0.403046 5_3:+41012716 None:intergenic
GGACAAGGAGTTAATGGCTT+TGG 0.405221 5_3:-41013385 Msa0811710:CDS
AGGTCTTGATTCTCTTGTAA+TGG 0.410658 5_3:-41013452 Msa0811710:CDS
ATCAAACATTTGGTTGCAAA+AGG 0.420709 5_3:-41013166 Msa0811710:CDS
GAAGCTTGTGATCAAACATT+TGG 0.426546 5_3:-41013176 Msa0811710:CDS
GTGATCATCGGCGAAGAATC+GGG 0.429361 5_3:-41012776 Msa0811710:CDS
GCTAAAACTATGTTTGTGTT+TGG 0.432621 5_3:+41015142 None:intergenic
ATTTCTGTTCCTAGAAATGT+AGG 0.437211 5_3:-41012908 Msa0811710:CDS
TCGGAAATGCTCGAATGTAT+TGG 0.438087 5_3:-41013049 Msa0811710:CDS
CCCATTTCTTCGCTTGCTAA+AGG 0.439472 5_3:+41012953 None:intergenic
ACCGGCTGCAATGTTGGTCT+CGG 0.439980 5_3:+41013306 None:intergenic
GTGTATATTGTACAAAATAG+AGG 0.440797 5_3:-41012218 Msa0811710:three_prime_UTR
CGCAATCACCGTCGGTAAAA+GGG 0.440824 5_3:-41013335 Msa0811710:CDS
AGCTGTGGATGATCTTAGTA+AGG 0.441939 5_3:-41012612 Msa0811710:CDS
AATCGGGACAATTTGAAGCT+TGG 0.456577 5_3:-41012760 Msa0811710:CDS
AGGCCATTCTGCTTCTGGTA+TGG 0.459415 5_3:+41014141 None:intergenic
AGGTTGGTATTGTTGTTACT+TGG 0.459571 5_3:+41015118 None:intergenic
CAATGTTGATGATCTTAAAG+AGG 0.478016 5_3:-41012849 Msa0811710:CDS
AGTGTGATAATCAATGAAAA+TGG 0.478665 5_3:+41012394 None:intergenic
AATTGGTTCAACACAATTGT+GGG 0.479202 5_3:-41012130 Msa0811710:three_prime_UTR
AACTGCACCGGCTGCAATGT+TGG 0.481393 5_3:+41013300 None:intergenic
CTGCAATGTTGGTCTCGGTT+CGG 0.486737 5_3:+41013311 None:intergenic
ATTGTGAATAAAATGCTTCA+TGG 0.487727 5_3:-41012587 Msa0811710:CDS
ACATTCGAGCATTTCCGAAA+GGG 0.488912 5_3:+41013054 None:intergenic
GGAGCAAAAGATTAGAGCTA+AGG 0.501884 5_3:-41012450 Msa0811710:CDS
AATAATATTAGTAATAAGGT+TGG 0.502115 5_3:+41015102 None:intergenic
GATTGCTGAGACTCTCCCTT+CGG 0.504846 5_3:+41013114 None:intergenic
CAAAGCTCACCAATGGCTCT+AGG 0.509555 5_3:+41014121 None:intergenic
CCTTTAGCAAGCGAAGAAAT+GGG 0.509769 5_3:-41012953 Msa0811710:CDS
CGGTGCAGTTTCTGTTAGCT+CGG 0.512744 5_3:-41013287 Msa0811710:CDS
AAATTGGTTCAACACAATTG+TGG 0.514071 5_3:-41012131 Msa0811710:three_prime_UTR
GCAGAATGGCCTAGAGCCAT+TGG 0.516082 5_3:-41014130 Msa0811710:CDS
GATTCTCTTGTAATGGGAGA+AGG 0.520460 5_3:-41013445 Msa0811710:CDS
TAAACGAGTAGTAACATAAG+AGG 0.520993 5_3:+41014970 None:intergenic
TACTTTGACAGCTCTGATGC+AGG 0.523941 5_3:+41013529 None:intergenic
CATTCTTGCATTGCCATGTG+AGG 0.524732 5_3:+41013225 None:intergenic
TTGCCATGTGAGGCTTGATC+AGG 0.526089 5_3:+41013235 None:intergenic
AAGAGCTTTGTTCAAAGCAG+AGG 0.528512 5_3:-41014926 Msa0811710:CDS
TCACATCTCAAATGTTGCAT+TGG 0.531540 5_3:+41012563 None:intergenic
CGACAACATATATCTCCATT+CGG 0.533183 5_3:+41014053 None:intergenic
GCAAAAGATTAGAGCTAAGG+TGG 0.544298 5_3:-41012447 Msa0811710:CDS
CAACTTGTTTGACTTGTGCA+AGG 0.546113 5_3:+41013416 None:intergenic
CATTCGAGCATTTCCGAAAG+GGG 0.550182 5_3:+41013055 None:intergenic
GTCAAACAAGTTGTGAAAGC+AGG 0.553805 5_3:-41013406 Msa0811710:CDS
ATGCAACATTTGAGATGTGA+TGG 0.556625 5_3:-41012560 Msa0811710:CDS
TCAAACATTTGGTTGCAAAA+GGG 0.561106 5_3:-41013165 Msa0811710:CDS
GGATAGGCTAAGAAAAGCAA+TGG 0.563807 5_3:-41012807 Msa0811710:CDS
TGATGATCTTAAAGAGGTTG+TGG 0.565478 5_3:-41012843 Msa0811710:CDS
AGAATGCTAGTTATTGGAGC+TGG 0.568228 5_3:-41013208 Msa0811710:CDS
TGTACAAAATAGAGGAGTTG+TGG 0.577839 5_3:-41012210 Msa0811710:three_prime_UTR
AATGTTTAGTCTTGAAACTG+AGG 0.579905 5_3:-41012483 Msa0811710:CDS
CAAGTTGTGAAAGCAGGACA+AGG 0.580921 5_3:-41013400 Msa0811710:CDS
ACCGAGACCAACATTGCAGC+CGG 0.581151 5_3:-41013307 Msa0811710:CDS
TTGCCATACCAGAAGCAGAA+TGG 0.581580 5_3:-41014144 Msa0811710:CDS
GCTGTGGATGATCTTAGTAA+GGG 0.582592 5_3:-41012611 Msa0811710:CDS
TACATTCGAGCATTTCCGAA+AGG 0.590437 5_3:+41013053 None:intergenic
GAACAACATTTAAGGAACAA+AGG 0.591907 5_3:+41015013 None:intergenic
GTAGTTGTTAATCGAACCGA+AGG 0.592291 5_3:-41013130 Msa0811710:CDS
CAACAGGATATACAAAGGAA+AGG 0.593342 5_3:-41014228 Msa0811710:intron
TCTGAGCACCTGCAACCGAA+TGG 0.595913 5_3:-41014068 Msa0811710:CDS
TTGATCAGGTAACTTCATCA+AGG 0.596661 5_3:+41013249 None:intergenic
GTGTCAAAGAAGTCACTGAA+TGG 0.597620 5_3:-41014012 Msa0811710:CDS
TGGCTGCCAACAAAGAGGAT+AGG 0.597993 5_3:-41012823 Msa0811710:CDS
GATGTGATGGGAGTGATAGT+AGG 0.608822 5_3:-41012547 Msa0811710:CDS
TTCAAGCACGCAATCACCGT+CGG 0.609589 5_3:-41013343 Msa0811710:CDS
ATGGAAGCACAAGTGATCAT+CGG 0.609797 5_3:-41012788 Msa0811710:CDS
CAGTGACTTCTTTGACACCA+CGG 0.610814 5_3:+41014017 None:intergenic
GTGTCATATTAATCTTACTG+TGG 0.617221 5_3:+41012416 None:intergenic
CTGTGGATGATCTTAGTAAG+GGG 0.621235 5_3:-41012610 Msa0811710:CDS
TTACCTGATCAAGCCTCACA+TGG 0.622088 5_3:-41013238 Msa0811710:CDS
CAGATTACAAAGCTCACCAA+TGG 0.622987 5_3:+41014114 None:intergenic
TAGCAAGCGAAGAAATGGGA+GGG 0.637799 5_3:-41012949 Msa0811710:CDS
TTATTGGAGCTGGCAAAATG+GGG 0.640758 5_3:-41013198 Msa0811710:CDS
ACAGATTTAGCATTATCACT+AGG 0.641571 5_3:+41014860 None:intergenic
GAACAGAAATATCAACGAAG+AGG 0.651799 5_3:+41012921 None:intergenic
CGAGCTAACAGAAACTGCAC+CGG 0.659200 5_3:+41013288 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.660035 5_3:-41012828 Msa0811710:CDS
AAATGATGTGGCAAAAGATG+TGG 0.662446 5_3:+41015188 None:intergenic
ACTTTCAACAGGATATACAA+AGG 0.666271 5_3:-41014233 Msa0811710:intron
GGCTTTGGTAGAAACATCAG+TGG 0.667204 5_3:-41013370 Msa0811710:CDS
TGCAACATTTGAGATGTGAT+GGG 0.668284 5_3:-41012559 Msa0811710:CDS
AAATGAATAATGAAATGATG+TGG 0.671437 5_3:+41015176 None:intergenic
ACACTAATTAGTAATTACAA+TGG 0.672645 5_3:-41015071 Msa0811710:exon
TTAGCAAGCGAAGAAATGGG+AGG 0.688497 5_3:-41012950 Msa0811710:CDS
GTCGCACTTTCTCAGCACCG+TGG 0.705085 5_3:-41014034 Msa0811710:CDS
TAGTTGTTAATCGAACCGAA+GGG 0.773384 5_3:-41013129 Msa0811710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATTAGTAATAAGGT+TGG + chr5_3:41012212-41012231 None:intergenic 15.0%
!! AGACAATAATATTAGTAATA+AGG + chr5_3:41012216-41012235 None:intergenic 15.0%
!!! GTTTTTTTGTTAATAATGAA+TGG - chr5_3:41012529-41012548 Msa0811710:CDS 15.0%
!! ATACTCTTAATGAATTTATA+TGG + chr5_3:41012900-41012919 None:intergenic 15.0%
!! AAATGAATAATGAAATGATG+TGG + chr5_3:41012138-41012157 None:intergenic 20.0%
!! ACACTAATTAGTAATTACAA+TGG - chr5_3:41012240-41012259 Msa0811710:three_prime_UTR 20.0%
!! TAACAAAAAAACATTCAAAG+AGG + chr5_3:41012521-41012540 None:intergenic 20.0%
!! TAATGAATGGTTCAATTATA+TGG - chr5_3:41012542-41012561 Msa0811710:CDS 20.0%
!! GTTTAATTATGTTTAGTAGA+TGG - chr5_3:41012647-41012666 Msa0811710:CDS 20.0%
!! GATGGTTAATGAATATAATA+AGG - chr5_3:41012665-41012684 Msa0811710:CDS 20.0%
!! TGTTCAAAATCATTGTTAAT+TGG + chr5_3:41012720-41012739 None:intergenic 20.0%
!! AATTAAACACATGAAAGTTA+TGG - chr5_3:41012805-41012824 Msa0811710:CDS 20.0%
!! GAATTTATATGGATATAACA+AGG + chr5_3:41012889-41012908 None:intergenic 20.0%
!! TAAATATCTACGTATATGTT+TGG - chr5_3:41013372-41013391 Msa0811710:CDS 20.0%
!! ATAGAAATAGATTATGCATT+AGG - chr5_3:41013511-41013530 Msa0811710:CDS 20.0%
!!! ACATTTTGTTTCAAAATCAA+AGG + chr5_3:41014328-41014347 None:intergenic 20.0%
!!! GATTTTGAAACAAAATGTTA+AGG - chr5_3:41014330-41014349 Msa0811710:intron 20.0%
!! ATAACCAAAAAAACAAACAA+AGG + chr5_3:41015042-41015061 None:intergenic 20.0%
! AAGAAGAAGAACAACATTTA+AGG + chr5_3:41012309-41012328 None:intergenic 25.0%
!!! ACTACTCGTTTATCATTTTT+TGG - chr5_3:41012352-41012371 Msa0811710:three_prime_UTR 25.0%
! ATGGTTCAATTATATGGTTA+AGG - chr5_3:41012548-41012567 Msa0811710:CDS 25.0%
! AATTATATGGTTAAGGTTAG+TGG - chr5_3:41012555-41012574 Msa0811710:CDS 25.0%
!! TTATGAAATTGACTTTCAAC+AGG - chr5_3:41013067-41013086 Msa0811710:CDS 25.0%
! ACTTATAGCTTATACGAAAA+CGG - chr5_3:41013464-41013483 Msa0811710:CDS 25.0%
! AAACAAATTGAGTGTATGTT+TGG + chr5_3:41013693-41013712 None:intergenic 25.0%
!! TCTATTGTATTGATACAGAT+TGG - chr5_3:41013719-41013738 Msa0811710:intron 25.0%
!!! TCTATTTTTGCTATACAACA+AGG - chr5_3:41013805-41013824 Msa0811710:intron 25.0%
!! CAACATCAATTATTTCTTCA+CGG + chr5_3:41014222-41014241 None:intergenic 25.0%
! TTCCAACCATTAAGAAATTA+AGG - chr5_3:41014593-41014612 Msa0811710:intron 25.0%
! TCCAACCATTAAGAAATTAA+GGG - chr5_3:41014594-41014613 Msa0811710:intron 25.0%
! ATAAGCCCTTAATTTCTTAA+TGG + chr5_3:41014602-41014621 None:intergenic 25.0%
! TGAGAAATGTTTAGGTAAAA+TGG - chr5_3:41014648-41014667 Msa0811710:intron 25.0%
! GAGAAATGTTTAGGTAAAAT+GGG - chr5_3:41014649-41014668 Msa0811710:intron 25.0%
! ATTGTGAATAAAATGCTTCA+TGG - chr5_3:41014724-41014743 Msa0811710:intron 25.0%
! AGTGTGATAATCAATGAAAA+TGG + chr5_3:41014920-41014939 None:intergenic 25.0%
!!! CACACTCATTTTTTTTCTTA+TGG - chr5_3:41014934-41014953 Msa0811710:CDS 25.0%
! GTGTATATTGTACAAAATAG+AGG - chr5_3:41015093-41015112 Msa0811710:five_prime_UTR 25.0%
! TTACTAATTCCGATTGAAAA+AGG + chr5_3:41015162-41015181 None:intergenic 25.0%
! TTCAATCGGAATTAGTAAAT+TGG - chr5_3:41015164-41015183 Msa0811710:five_prime_UTR 25.0%
GCTAAAACTATGTTTGTGTT+TGG + chr5_3:41012172-41012191 None:intergenic 30.0%
! TAGTTTCTATGGTGCTAAAT+TGG - chr5_3:41012273-41012292 Msa0811710:three_prime_UTR 30.0%
GAACAACATTTAAGGAACAA+AGG + chr5_3:41012301-41012320 None:intergenic 30.0%
TAAACGAGTAGTAACATAAG+AGG + chr5_3:41012344-41012363 None:intergenic 30.0%
ACAGATTTAGCATTATCACT+AGG + chr5_3:41012454-41012473 None:intergenic 30.0%
! CATAGTTAACCAAGATTTTC+AGG - chr5_3:41012738-41012757 Msa0811710:CDS 30.0%
TCAAATGTACCTGAAAATCT+TGG + chr5_3:41012750-41012769 None:intergenic 30.0%
GTACATTTGATCACAAATTG+TGG - chr5_3:41012760-41012779 Msa0811710:CDS 30.0%
TGATCACAAATTGTGGTTAA+CGG - chr5_3:41012767-41012786 Msa0811710:CDS 30.0%
ACTTTCAACAGGATATACAA+AGG - chr5_3:41013078-41013097 Msa0811710:CDS 30.0%
AATGCAAGAATGCTAGTTAT+TGG - chr5_3:41014097-41014116 Msa0811710:CDS 30.0%
ATCAAACATTTGGTTGCAAA+AGG - chr5_3:41014145-41014164 Msa0811710:CDS 30.0%
TCAAACATTTGGTTGCAAAA+GGG - chr5_3:41014146-41014165 Msa0811710:CDS 30.0%
GATAATTTACAAACCCCTTT+CGG - chr5_3:41014243-41014262 Msa0811710:intron 30.0%
ATTTCTGTTCCTAGAAATGT+AGG - chr5_3:41014403-41014422 Msa0811710:intron 30.0%
!! CAATGTTGATGATCTTAAAG+AGG - chr5_3:41014462-41014481 Msa0811710:intron 30.0%
!! AATGTTTAGTCTTGAAACTG+AGG - chr5_3:41014828-41014847 Msa0811710:CDS 30.0%
GTGTCATATTAATCTTACTG+TGG + chr5_3:41014898-41014917 None:intergenic 30.0%
! TTCTTTCTCAAGCCTTTTAA+GGG + chr5_3:41014976-41014995 None:intergenic 30.0%
! ATTCTTTCTCAAGCCTTTTA+AGG + chr5_3:41014977-41014996 None:intergenic 30.0%
!!! GTCTCCTTTGTTTGTTTTTT+TGG - chr5_3:41015035-41015054 Msa0811710:CDS 30.0%
! AAATTGGTTCAACACAATTG+TGG - chr5_3:41015180-41015199 Msa0811710:five_prime_UTR 30.0%
! AATTGGTTCAACACAATTGT+GGG - chr5_3:41015181-41015200 Msa0811710:five_prime_UTR 30.0%
AAATGATGTGGCAAAAGATG+TGG + chr5_3:41012126-41012145 None:intergenic 35.0%
!!! GTTTGTGTTTGGTTTTTGTG+TGG + chr5_3:41012161-41012180 None:intergenic 35.0%
!! AGGTTGGTATTGTTGTTACT+TGG + chr5_3:41012196-41012215 None:intergenic 35.0%
! GCTGTTTCAACTAGTTTCTA+TGG - chr5_3:41012262-41012281 Msa0811710:three_prime_UTR 35.0%
CAACAGGATATACAAAGGAA+AGG - chr5_3:41013083-41013102 Msa0811710:CDS 35.0%
CGACAACATATATCTCCATT+CGG + chr5_3:41013261-41013280 None:intergenic 35.0%
GGGAAAAAATGAACCTACAT+TGG + chr5_3:41013329-41013348 None:intergenic 35.0%
TTTCACAAGAACTGCGTATA+GGG + chr5_3:41013350-41013369 None:intergenic 35.0%
TGCAAGAATTAGTGCATGAT+TGG - chr5_3:41013603-41013622 Msa0811710:intron 35.0%
GACGGTGTATATTTGGATTT+CGG + chr5_3:41013667-41013686 None:intergenic 35.0%
TTGGATTGACGGTGTATATT+TGG + chr5_3:41013674-41013693 None:intergenic 35.0%
TGAGTGTATGTTTGGATTGA+CGG + chr5_3:41013685-41013704 None:intergenic 35.0%
!!! ATTCTTGTTTTGCAGACAAG+TGG - chr5_3:41013755-41013774 Msa0811710:intron 35.0%
AGGTCTTGATTCTCTTGTAA+TGG - chr5_3:41013859-41013878 Msa0811710:intron 35.0%
GGTCTTGATTCTCTTGTAAT+GGG - chr5_3:41013860-41013879 Msa0811710:intron 35.0%
TTGATCAGGTAACTTCATCA+AGG + chr5_3:41014065-41014084 None:intergenic 35.0%
GAAGCTTGTGATCAAACATT+TGG - chr5_3:41014135-41014154 Msa0811710:CDS 35.0%
! TGCAAAAGGGTGTAAAAAGA+TGG - chr5_3:41014159-41014178 Msa0811710:CDS 35.0%
TAGTTGTTAATCGAACCGAA+GGG - chr5_3:41014182-41014201 Msa0811710:CDS 35.0%
GAACAGAAATATCAACGAAG+AGG + chr5_3:41014393-41014412 None:intergenic 35.0%
ACACATGAACCTACATTTCT+AGG + chr5_3:41014415-41014434 None:intergenic 35.0%
TGATGATCTTAAAGAGGTTG+TGG - chr5_3:41014468-41014487 Msa0811710:intron 35.0%
GCCCTTAATTTCTTAATGGT+TGG + chr5_3:41014598-41014617 None:intergenic 35.0%
GGCTTATGCTGAAAGATTAA+GGG - chr5_3:41014615-41014634 Msa0811710:intron 35.0%
GCAGAACTTGAGAAATGTTT+AGG - chr5_3:41014640-41014659 Msa0811710:intron 35.0%
TAAGAAGACACAAAAAGCTG+TGG - chr5_3:41014684-41014703 Msa0811710:intron 35.0%
TCACATCTCAAATGTTGCAT+TGG + chr5_3:41014751-41014770 None:intergenic 35.0%
! ATGCAACATTTGAGATGTGA+TGG - chr5_3:41014751-41014770 Msa0811710:intron 35.0%
! TGCAACATTTGAGATGTGAT+GGG - chr5_3:41014752-41014771 Msa0811710:intron 35.0%
! TGAAACTGAGGTTTCTGTTT+TGG - chr5_3:41014840-41014859 Msa0811710:CDS 35.0%
TGAAAACCCTTACCCTTAAA+AGG - chr5_3:41014961-41014980 Msa0811710:CDS 35.0%
TGTACAAAATAGAGGAGTTG+TGG - chr5_3:41015101-41015120 Msa0811710:five_prime_UTR 35.0%
! TGAAAAAGGCACACACATTT+AGG + chr5_3:41015148-41015167 None:intergenic 35.0%
!!! ATGTGTGTGCCTTTTTCAAT+CGG - chr5_3:41015150-41015169 Msa0811710:five_prime_UTR 35.0%
!! AAGAGCTTTGTTCAAAGCAG+AGG - chr5_3:41012385-41012404 Msa0811710:three_prime_UTR 40.0%
! CGCTTCATCTTCTGATGTTT+TGG - chr5_3:41012423-41012442 Msa0811710:exon 40.0%
! ATCGTGATTAGTTACGTTCG+TGG - chr5_3:41012843-41012862 Msa0811710:CDS 40.0%
CAGATTACAAAGCTCACCAA+TGG + chr5_3:41013200-41013219 None:intergenic 40.0%
ATATATCTCCATTCGGTTGC+AGG + chr5_3:41013254-41013273 None:intergenic 40.0%
GTGTCAAAGAAGTCACTGAA+TGG - chr5_3:41013299-41013318 Msa0811710:CDS 40.0%
ACTGAATGGATGTCCAATGT+AGG - chr5_3:41013313-41013332 Msa0811710:CDS 40.0%
TTCACAAGAACTGCGTATAG+GGG + chr5_3:41013349-41013368 None:intergenic 40.0%
CTTTCACAAGAACTGCGTAT+AGG + chr5_3:41013351-41013370 None:intergenic 40.0%
CACTAATTCTTGCACGAACT+CGG + chr5_3:41013597-41013616 None:intergenic 40.0%
TTAGTGCATGATTGGAACCA+CGG - chr5_3:41013611-41013630 Msa0811710:intron 40.0%
!!! CACCTTTTTGAAGTATCAGC+AGG - chr5_3:41013839-41013858 Msa0811710:intron 40.0%
GACCTGCTGATACTTCAAAA+AGG + chr5_3:41013844-41013863 None:intergenic 40.0%
! GATTCTCTTGTAATGGGAGA+AGG - chr5_3:41013866-41013885 Msa0811710:intron 40.0%
!! CAACTTGTTTGACTTGTGCA+AGG + chr5_3:41013898-41013917 None:intergenic 40.0%
GTCAAACAAGTTGTGAAAGC+AGG - chr5_3:41013905-41013924 Msa0811710:intron 40.0%
AAAGCAGGACAAGGAGTTAA+TGG - chr5_3:41013920-41013939 Msa0811710:intron 40.0%
AGAATGCTAGTTATTGGAGC+TGG - chr5_3:41014103-41014122 Msa0811710:CDS 40.0%
AGTTATTGGAGCTGGCAAAA+TGG - chr5_3:41014111-41014130 Msa0811710:CDS 40.0%
GTTATTGGAGCTGGCAAAAT+GGG - chr5_3:41014112-41014131 Msa0811710:CDS 40.0%
TTATTGGAGCTGGCAAAATG+GGG - chr5_3:41014113-41014132 Msa0811710:CDS 40.0%
GTAGTTGTTAATCGAACCGA+AGG - chr5_3:41014181-41014200 Msa0811710:CDS 40.0%
ACATTCGAGCATTTCCGAAA+GGG + chr5_3:41014260-41014279 None:intergenic 40.0%
TACATTCGAGCATTTCCGAA+AGG + chr5_3:41014261-41014280 None:intergenic 40.0%
TCGGAAATGCTCGAATGTAT+TGG - chr5_3:41014262-41014281 Msa0811710:intron 40.0%
TCCTTTAGCAAGCGAAGAAA+TGG - chr5_3:41014357-41014376 Msa0811710:intron 40.0%
CCTTTAGCAAGCGAAGAAAT+GGG - chr5_3:41014358-41014377 Msa0811710:intron 40.0%
CGATGATCTTGAGTCTGTTA+AGG - chr5_3:41014435-41014454 Msa0811710:intron 40.0%
TCTTAGCCTATCCTCTTTGT+TGG + chr5_3:41014497-41014516 None:intergenic 40.0%
GGATAGGCTAAGAAAAGCAA+TGG - chr5_3:41014504-41014523 Msa0811710:intron 40.0%
! ATGGAAGCACAAGTGATCAT+CGG - chr5_3:41014523-41014542 Msa0811710:intron 40.0%
! AATCGGGACAATTTGAAGCT+TGG - chr5_3:41014551-41014570 Msa0811710:intron 40.0%
GGGCTTATGCTGAAAGATTA+AGG - chr5_3:41014614-41014633 Msa0811710:intron 40.0%
AGCTGTGGATGATCTTAGTA+AGG - chr5_3:41014699-41014718 Msa0811710:intron 40.0%
GCTGTGGATGATCTTAGTAA+GGG - chr5_3:41014700-41014719 Msa0811710:intron 40.0%
CTGTGGATGATCTTAGTAAG+GGG - chr5_3:41014701-41014720 Msa0811710:intron 40.0%
GGAGCAAAAGATTAGAGCTA+AGG - chr5_3:41014861-41014880 Msa0811710:CDS 40.0%
GCAAAAGATTAGAGCTAAGG+TGG - chr5_3:41014864-41014883 Msa0811710:CDS 40.0%
!! CTCAAGCCTTTTAAGGGTAA+GGG + chr5_3:41014970-41014989 None:intergenic 40.0%
!! TCTCAAGCCTTTTAAGGGTA+AGG + chr5_3:41014971-41014990 None:intergenic 40.0%
GGCTCTATTTACGAGTTTAG+AGG + chr5_3:41015127-41015146 None:intergenic 40.0%
AGGAGCAGCATTGTCGTTAT+TGG - chr5_3:41013103-41013122 Msa0811710:CDS 45.0%
GGAGCAGCATTGTCGTTATT+GGG - chr5_3:41013104-41013123 Msa0811710:CDS 45.0%
TTGCCATACCAGAAGCAGAA+TGG - chr5_3:41013167-41013186 Msa0811710:CDS 45.0%
CAGTGACTTCTTTGACACCA+CGG + chr5_3:41013297-41013316 None:intergenic 45.0%
TTGTAGCTTCACACTTACCG+TGG + chr5_3:41013631-41013650 None:intergenic 45.0%
! TACTTTGACAGCTCTGATGC+AGG + chr5_3:41013785-41013804 None:intergenic 45.0%
CAAGTTGTGAAAGCAGGACA+AGG - chr5_3:41013911-41013930 Msa0811710:intron 45.0%
GGACAAGGAGTTAATGGCTT+TGG - chr5_3:41013926-41013945 Msa0811710:intron 45.0%
! GGCTTTGGTAGAAACATCAG+TGG - chr5_3:41013941-41013960 Msa0811710:intron 45.0%
TTACCTGATCAAGCCTCACA+TGG - chr5_3:41014073-41014092 Msa0811710:CDS 45.0%
CATTCTTGCATTGCCATGTG+AGG + chr5_3:41014089-41014108 None:intergenic 45.0%
CATTCGAGCATTTCCGAAAG+GGG + chr5_3:41014259-41014278 None:intergenic 45.0%
! CCCATTTCTTCGCTTGCTAA+AGG + chr5_3:41014361-41014380 None:intergenic 45.0%
TTAGCAAGCGAAGAAATGGG+AGG - chr5_3:41014361-41014380 Msa0811710:intron 45.0%
TAGCAAGCGAAGAAATGGGA+GGG - chr5_3:41014362-41014381 Msa0811710:intron 45.0%
AGTGATCATCGGCGAAGAAT+CGG - chr5_3:41014534-41014553 Msa0811710:intron 45.0%
! GATGTGATGGGAGTGATAGT+AGG - chr5_3:41014764-41014783 Msa0811710:intron 45.0%
!!! TTTTTTTTATAATAATTTGT+TGG - chr5_3:41012604-41012623 Msa0811710:CDS 5.0%
! AGTTTTTCGCGCACATCGAC+TGG + chr5_3:41013148-41013167 None:intergenic 50.0%
AGGCCATTCTGCTTCTGGTA+TGG + chr5_3:41013173-41013192 None:intergenic 50.0%
CAAAGCTCACCAATGGCTCT+AGG + chr5_3:41013193-41013212 None:intergenic 50.0%
TTCAAGCACGCAATCACCGT+CGG - chr5_3:41013968-41013987 Msa0811710:intron 50.0%
ACGCAATCACCGTCGGTAAA+AGG - chr5_3:41013975-41013994 Msa0811710:intron 50.0%
CGCAATCACCGTCGGTAAAA+GGG - chr5_3:41013976-41013995 Msa0811710:intron 50.0%
! CTGCAATGTTGGTCTCGGTT+CGG + chr5_3:41014003-41014022 None:intergenic 50.0%
CGAGCTAACAGAAACTGCAC+CGG + chr5_3:41014026-41014045 None:intergenic 50.0%
CGGTGCAGTTTCTGTTAGCT+CGG - chr5_3:41014024-41014043 Msa0811710:CDS 50.0%
TTGCCATGTGAGGCTTGATC+AGG + chr5_3:41014079-41014098 None:intergenic 50.0%
GATTGCTGAGACTCTCCCTT+CGG + chr5_3:41014200-41014219 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+AGG - chr5_3:41014488-41014507 Msa0811710:intron 50.0%
GTGATCATCGGCGAAGAATC+GGG - chr5_3:41014535-41014554 Msa0811710:intron 50.0%
! GCTCTAGGCCATTCTGCTTC+TGG + chr5_3:41013178-41013197 None:intergenic 55.0%
GCAGAATGGCCTAGAGCCAT+TGG - chr5_3:41013181-41013200 Msa0811710:CDS 55.0%
TCTGAGCACCTGCAACCGAA+TGG - chr5_3:41013243-41013262 Msa0811710:CDS 55.0%
! GGTTCGGACCCTTTTACCGA+CGG + chr5_3:41013987-41014006 None:intergenic 55.0%
ACCGAGACCAACATTGCAGC+CGG - chr5_3:41014004-41014023 Msa0811710:CDS 55.0%
! ACCGGCTGCAATGTTGGTCT+CGG + chr5_3:41014008-41014027 None:intergenic 55.0%
!! AACTGCACCGGCTGCAATGT+TGG + chr5_3:41014014-41014033 None:intergenic 55.0%
GGTTGTGGCTGCCAACAAAG+AGG - chr5_3:41014483-41014502 Msa0811710:intron 55.0%
GTCGCACTTTCTCAGCACCG+TGG - chr5_3:41013277-41013296 Msa0811710:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 41012122 41015211 41012122 ID=Msa0811710;Name=Msa0811710
chr5_3 mRNA 41012122 41015211 41012122 ID=Msa0811710-mRNA-1;Parent=Msa0811710;Name=Msa0811710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|3|308|542
chr5_3 exon 41012122 41013563 41012122 ID=Msa0811710-mRNA-1:exon:12660;Parent=Msa0811710-mRNA-1
chr5_3 exon 41014003 41014244 41014003 ID=Msa0811710-mRNA-1:exon:12659;Parent=Msa0811710-mRNA-1
chr5_3 exon 41014822 41015211 41014822 ID=Msa0811710-mRNA-1:exon:12658;Parent=Msa0811710-mRNA-1
chr5_3 five_prime_UTR 41015075 41015211 41015075 ID=Msa0811710-mRNA-1:five_prime_utr;Parent=Msa0811710-mRNA-1
chr5_3 CDS 41014822 41015074 41014822 ID=Msa0811710-mRNA-1:cds;Parent=Msa0811710-mRNA-1
chr5_3 CDS 41014003 41014244 41014003 ID=Msa0811710-mRNA-1:cds;Parent=Msa0811710-mRNA-1
chr5_3 CDS 41012430 41013563 41012430 ID=Msa0811710-mRNA-1:cds;Parent=Msa0811710-mRNA-1
chr5_3 three_prime_UTR 41012122 41012429 41012122 ID=Msa0811710-mRNA-1:three_prime_utr;Parent=Msa0811710-mRNA-1
Gene Sequence

>Msa0811710

ATGGCTGTTTCAACTAGTTTCTATGGTGCTAAATTGGAACCTTTGTTCCTTAAATGTTGTTCTTCTTCTTCAACAACATCTTCCTCTTATGTTACTACTCGTTTATCATTTTTTGGTAGTAACAAAAAGAGCTTTGTTCAAAGCAGAGGTTCAATTCGTTGTGACGCTTCATCTTCTGATGTTTTGGTTGATCCTAGTGATAATGCTAAATCTGTTTCTGCTCTACAACAGCTTAAAGCTTCTGCAACTGATAGATATACAAAGGAAAGGAGCAGCATTGTCGTTATTGGGCTAAGTATTCATACTACACCAGTCGATGTGCGCGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCAGCAGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTCGCACTTTCTCAGCACCGTGGTGTCAAAGAAGTCACTGAATGGATGTCCAATACAAGTGGTATACCTGCATCAGAGCTGTCAAAGTATCTATTTTTGCTATACAACAAGGATGCAACACAACACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTGCACAAGTCAAACAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGTAGAAACATCAGTGGTCTATTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACCGAGACCAACATTGCAGCCGGTGCAGTTTCTGTTAGCTCGGCTGCAGTCGAATTAGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGCAATGCAAGAATGCTAGTTATTGGAGCTGGCAAAATGGGGAAGCTTGTGATCAAACATTTGGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATCGAACCGAAGGGAGAGTCTCAGCAATCCGTGAAGAAATAATTGATGTTGAGATAATTTACAAACCCCTTTCGGAAATGCTCGAATGTATTGGTGAAGCAGATGTTGTTTTCACAAGCACTGCATCAGAGAATCCTTTGATTTTGAAACAAAATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAATGGGAGGGAAACGCCTCTTCGTTGATATTTCTGTTCCTAGAAATGTAGGTTCATGTGTCGATGATCTTGAGTCTGTTAAGGTTTACAATGTTGATGATCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATAGGCTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGACAATTTGAAGCTTGGAGAGACTCATTAGAAACTGTTCCAACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCAGAACTTGAGAAATGTTTAGGTAAAATGGGTGATGATATAAATAAGAAGACACAAAAAGCTGTGGATGATCTTAGTAAGGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAACAGAATGTTTAGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAAAAGATTAGAGCTAAGGTGGAGCAAAAACCACAGTAA

Protein sequence

>Msa0811710

MAVSTSFYGAKLEPLFLKCCSSSSTTSSSYVTTRLSFFGSNKKSFVQSRGSIRCDASSSDVLVDPSDNAKSVSALQQLKASATDRYTKERSSIVVIGLSIHTTPVDVREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSNTSGIPASELSKYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEGRVSAIREEIIDVEIIYKPLSEMLECIGEADVVFTSTASENPLILKQNVKELPLASEEMGGKRLFVDISVPRNVGSCVDDLESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVSVLEQKIRAKVEQKPQ*