Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236190 | KEH36666.1 | 80.000 | 280 | 19 | 2 | 13 | 256 | 71 | 349 | 7.42e-152 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236190 | sp|Q9C7N4|GDL15_ARATH | 36.700 | 297 | 121 | 6 | 13 | 245 | 69 | 362 | 2.61e-51 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236190 | A0A072V4S0 | 80.000 | 280 | 19 | 2 | 13 | 256 | 71 | 349 | 3.54e-152 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194350 | Msa0236190 | 0.831730 | 1.414218e-55 | -8.615850e-47 |
| Msa0236190 | Msa0274040 | 0.875446 | 3.061933e-68 | -8.615850e-47 |
| Msa0236190 | Msa0314590 | 0.941137 | 7.013382e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236190 | MtrunA17_Chr2g0284941 | 80.000 | 280 | 19 | 2 | 13 | 256 | 71 | 349 | 6.82e-156 | 437 |
| Msa0236190 | MtrunA17_Chr2g0285001 | 65.781 | 301 | 45 | 3 | 13 | 256 | 72 | 371 | 1.52e-128 | 369 |
| Msa0236190 | MtrunA17_Chr2g0284951 | 64.310 | 297 | 51 | 4 | 13 | 256 | 71 | 365 | 2.45e-122 | 353 |
| Msa0236190 | MtrunA17_Chr2g0284991 | 60.067 | 298 | 61 | 3 | 13 | 253 | 71 | 367 | 2.49e-116 | 338 |
| Msa0236190 | MtrunA17_Chr2g0284921 | 44.932 | 296 | 104 | 6 | 7 | 245 | 67 | 360 | 7.66e-73 | 226 |
| Msa0236190 | MtrunA17_Chr8g0380031 | 45.833 | 288 | 97 | 7 | 13 | 245 | 122 | 405 | 4.15e-68 | 216 |
| Msa0236190 | MtrunA17_Chr3g0085881 | 45.018 | 271 | 93 | 5 | 28 | 245 | 85 | 352 | 1.63e-64 | 205 |
| Msa0236190 | MtrunA17_Chr8g0380041 | 36.577 | 298 | 121 | 6 | 13 | 245 | 68 | 362 | 1.51e-53 | 177 |
| Msa0236190 | MtrunA17_Chr2g0285041 | 65.546 | 119 | 40 | 1 | 29 | 146 | 1 | 119 | 1.23e-49 | 160 |
| Msa0236190 | MtrunA17_Chr3g0086641 | 33.893 | 298 | 128 | 7 | 13 | 245 | 76 | 369 | 3.84e-46 | 157 |
| Msa0236190 | MtrunA17_Chr2g0285061 | 34.564 | 298 | 127 | 7 | 13 | 245 | 70 | 364 | 3.87e-45 | 155 |
| Msa0236190 | MtrunA17_Chr2g0284931 | 40.741 | 216 | 88 | 5 | 69 | 245 | 5 | 219 | 1.19e-38 | 134 |
| Msa0236190 | MtrunA17_Chr3g0077581 | 38.208 | 212 | 105 | 4 | 13 | 200 | 74 | 283 | 3.05e-37 | 134 |
| Msa0236190 | MtrunA17_Chr3g0077571 | 30.068 | 296 | 137 | 9 | 13 | 245 | 68 | 356 | 2.71e-31 | 118 |
| Msa0236190 | MtrunA17_Chr3g0131321 | 37.209 | 215 | 108 | 6 | 10 | 201 | 72 | 282 | 1.06e-29 | 114 |
| Msa0236190 | MtrunA17_Chr4g0017431 | 33.019 | 212 | 115 | 6 | 13 | 201 | 69 | 276 | 1.45e-21 | 92.4 |
| Msa0236190 | MtrunA17_Chr7g0275021 | 30.964 | 197 | 113 | 4 | 28 | 203 | 87 | 281 | 7.22e-18 | 82.0 |
| Msa0236190 | MtrunA17_Chr5g0434621 | 32.184 | 174 | 96 | 4 | 47 | 201 | 99 | 269 | 1.05e-17 | 81.3 |
| Msa0236190 | MtrunA17_Chr2g0301641 | 36.170 | 141 | 82 | 5 | 35 | 174 | 104 | 237 | 3.61e-17 | 80.1 |
| Msa0236190 | MtrunA17_Chr4g0060811 | 36.364 | 143 | 78 | 4 | 37 | 172 | 89 | 225 | 1.97e-16 | 77.8 |
| Msa0236190 | MtrunA17_Chr4g0068441 | 31.429 | 210 | 116 | 7 | 13 | 198 | 72 | 277 | 3.33e-16 | 77.0 |
| Msa0236190 | MtrunA17_Chr3g0092131 | 39.024 | 123 | 73 | 2 | 50 | 172 | 101 | 221 | 4.18e-16 | 77.0 |
| Msa0236190 | MtrunA17_Chr2g0294311 | 32.948 | 173 | 91 | 5 | 37 | 186 | 101 | 271 | 6.52e-16 | 76.3 |
| Msa0236190 | MtrunA17_Chr2g0294301 | 30.928 | 194 | 108 | 5 | 15 | 184 | 73 | 264 | 1.06e-15 | 75.9 |
| Msa0236190 | MtrunA17_Chr3g0085231 | 33.333 | 144 | 89 | 4 | 37 | 176 | 91 | 231 | 5.66e-15 | 73.6 |
| Msa0236190 | MtrunA17_Chr8g0374101 | 32.099 | 162 | 100 | 5 | 15 | 172 | 84 | 239 | 7.70e-15 | 73.2 |
| Msa0236190 | MtrunA17_Chr7g0275011 | 26.818 | 220 | 118 | 5 | 28 | 217 | 87 | 293 | 1.06e-14 | 72.8 |
| Msa0236190 | MtrunA17_Chr1g0189901 | 27.919 | 197 | 119 | 4 | 26 | 201 | 82 | 276 | 1.22e-14 | 72.8 |
| Msa0236190 | MtrunA17_Chr7g0215961 | 26.961 | 204 | 126 | 4 | 19 | 201 | 64 | 265 | 1.30e-14 | 72.4 |
| Msa0236190 | MtrunA17_Chr7g0275001 | 27.419 | 186 | 112 | 3 | 30 | 193 | 80 | 264 | 3.63e-14 | 71.2 |
| Msa0236190 | MtrunA17_Chr6g0455661 | 33.929 | 112 | 73 | 1 | 64 | 174 | 230 | 341 | 1.09e-13 | 70.1 |
| Msa0236190 | MtrunA17_Chr1g0182811 | 30.882 | 136 | 86 | 3 | 42 | 173 | 102 | 233 | 1.16e-13 | 69.7 |
| Msa0236190 | MtrunA17_Chr2g0330781 | 30.387 | 181 | 116 | 6 | 13 | 188 | 70 | 245 | 1.48e-13 | 69.3 |
| Msa0236190 | MtrunA17_Chr6g0457921 | 28.718 | 195 | 116 | 4 | 28 | 201 | 83 | 275 | 1.57e-13 | 69.3 |
| Msa0236190 | MtrunA17_Chr4g0008851 | 27.895 | 190 | 97 | 4 | 42 | 201 | 100 | 279 | 3.31e-13 | 68.6 |
| Msa0236190 | MtrunA17_Chr2g0284981 | 68.182 | 44 | 14 | 0 | 210 | 253 | 44 | 87 | 5.54e-13 | 63.5 |
| Msa0236190 | MtrunA17_Chr6g0459921 | 35.484 | 93 | 60 | 0 | 82 | 174 | 138 | 230 | 1.54e-12 | 66.6 |
| Msa0236190 | MtrunA17_Chr1g0189931 | 26.486 | 185 | 114 | 3 | 30 | 193 | 87 | 270 | 3.05e-12 | 65.9 |
| Msa0236190 | MtrunA17_Chr8g0344941 | 32.308 | 130 | 83 | 4 | 36 | 165 | 102 | 226 | 5.30e-12 | 65.1 |
| Msa0236190 | MtrunA17_Chr7g0274991 | 27.624 | 181 | 92 | 3 | 42 | 193 | 101 | 271 | 9.26e-12 | 64.3 |
| Msa0236190 | MtrunA17_Chr4g0027521 | 26.471 | 204 | 132 | 7 | 4 | 194 | 57 | 255 | 1.71e-11 | 63.5 |
| Msa0236190 | MtrunA17_Chr5g0396511 | 29.560 | 159 | 105 | 5 | 35 | 188 | 105 | 261 | 2.45e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236190 | AT1G29670.1 | 36.700 | 297 | 121 | 6 | 13 | 245 | 69 | 362 | 2.66e-52 | 174 |
| Msa0236190 | AT1G29670.2 | 36.700 | 297 | 121 | 6 | 13 | 245 | 137 | 430 | 2.63e-51 | 173 |
| Msa0236190 | AT1G29660.1 | 42.381 | 210 | 98 | 3 | 13 | 201 | 69 | 276 | 1.63e-48 | 164 |
| Msa0236190 | AT5G45670.1 | 41.905 | 210 | 99 | 3 | 13 | 201 | 67 | 274 | 1.80e-46 | 159 |
| Msa0236190 | AT4G18970.1 | 41.429 | 210 | 100 | 3 | 13 | 201 | 66 | 273 | 9.32e-46 | 157 |
| Msa0236190 | AT4G18970.2 | 41.429 | 210 | 100 | 3 | 13 | 201 | 66 | 273 | 4.35e-45 | 156 |
| Msa0236190 | AT1G33811.1 | 34.112 | 214 | 115 | 3 | 13 | 201 | 72 | 284 | 2.40e-36 | 132 |
| Msa0236190 | AT2G19050.2 | 37.981 | 208 | 100 | 5 | 13 | 200 | 69 | 267 | 2.76e-35 | 127 |
| Msa0236190 | AT2G19050.1 | 37.981 | 208 | 100 | 5 | 13 | 200 | 69 | 267 | 6.17e-35 | 128 |
| Msa0236190 | AT2G19010.1 | 38.860 | 193 | 90 | 3 | 28 | 200 | 82 | 266 | 1.01e-33 | 125 |
| Msa0236190 | AT2G19010.2 | 38.860 | 193 | 90 | 3 | 28 | 200 | 112 | 296 | 3.22e-33 | 124 |
| Msa0236190 | AT4G30140.1 | 35.897 | 234 | 111 | 5 | 13 | 215 | 71 | 296 | 2.38e-30 | 116 |
| Msa0236190 | AT2G19060.1 | 36.279 | 215 | 101 | 6 | 36 | 229 | 90 | 289 | 1.28e-29 | 114 |
| Msa0236190 | AT1G71691.1 | 31.132 | 212 | 121 | 5 | 28 | 220 | 6 | 211 | 2.04e-29 | 112 |
| Msa0236190 | AT1G71691.3 | 30.233 | 215 | 125 | 5 | 23 | 218 | 102 | 310 | 7.25e-29 | 111 |
| Msa0236190 | AT1G71691.2 | 30.415 | 217 | 126 | 5 | 23 | 220 | 102 | 312 | 1.52e-28 | 112 |
| Msa0236190 | AT5G08460.1 | 29.667 | 300 | 137 | 9 | 13 | 243 | 88 | 382 | 2.82e-26 | 105 |
| Msa0236190 | AT5G15720.3 | 35.882 | 170 | 95 | 3 | 35 | 190 | 56 | 225 | 3.18e-22 | 94.0 |
| Msa0236190 | AT5G15720.2 | 35.882 | 170 | 95 | 3 | 35 | 190 | 87 | 256 | 3.50e-22 | 93.6 |
| Msa0236190 | AT5G15720.1 | 35.882 | 170 | 95 | 3 | 35 | 190 | 87 | 256 | 7.13e-22 | 93.6 |
| Msa0236190 | AT4G16230.1 | 36.486 | 148 | 90 | 3 | 28 | 172 | 81 | 227 | 2.90e-19 | 84.7 |
| Msa0236190 | AT1G71250.1 | 31.707 | 205 | 112 | 5 | 37 | 218 | 101 | 300 | 3.43e-19 | 86.3 |
| Msa0236190 | AT5G37690.1 | 33.094 | 139 | 89 | 3 | 37 | 173 | 89 | 225 | 1.95e-16 | 78.2 |
| Msa0236190 | AT5G37690.2 | 33.094 | 139 | 89 | 3 | 37 | 173 | 81 | 217 | 2.05e-16 | 78.2 |
| Msa0236190 | AT3G50400.1 | 37.226 | 137 | 81 | 4 | 30 | 162 | 91 | 226 | 1.15e-15 | 76.3 |
| Msa0236190 | AT1G74460.1 | 37.692 | 130 | 65 | 5 | 50 | 172 | 101 | 221 | 3.67e-15 | 74.7 |
| Msa0236190 | AT2G23540.1 | 28.856 | 201 | 112 | 6 | 15 | 190 | 95 | 289 | 1.51e-14 | 72.8 |
| Msa0236190 | AT5G33370.2 | 28.319 | 226 | 117 | 7 | 30 | 224 | 85 | 296 | 1.63e-13 | 69.7 |
| Msa0236190 | AT5G33370.1 | 28.302 | 212 | 110 | 6 | 30 | 210 | 85 | 285 | 4.21e-13 | 68.6 |
| Msa0236190 | AT3G04290.1 | 27.473 | 182 | 93 | 3 | 41 | 193 | 96 | 267 | 1.45e-12 | 67.0 |
| Msa0236190 | AT4G10950.1 | 28.667 | 150 | 100 | 5 | 35 | 181 | 126 | 271 | 4.67e-12 | 65.5 |
| Msa0236190 | AT4G10950.2 | 28.667 | 150 | 100 | 5 | 35 | 181 | 130 | 275 | 5.23e-12 | 65.5 |
| Msa0236190 | AT5G55050.1 | 34.375 | 128 | 79 | 3 | 45 | 172 | 117 | 239 | 5.82e-12 | 65.5 |
| Msa0236190 | AT4G28780.1 | 30.370 | 135 | 86 | 3 | 42 | 173 | 99 | 228 | 3.50e-11 | 62.8 |
| Msa0236190 | AT2G30310.1 | 28.646 | 192 | 117 | 7 | 12 | 194 | 73 | 253 | 3.58e-11 | 62.8 |
Find 58 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATTCATCTAATAATTC+AGG | 0.225334 | 2_2:+9117352 | Msa0236190:CDS |
| AGAGTTATCTTTGAATTTAC+TGG | 0.229234 | 2_2:+9116632 | Msa0236190:CDS |
| TTGATTGCAGCTCAACTTCT+TGG | 0.235748 | 2_2:+9116186 | Msa0236190:intron |
| TATGACTTGTTGGGTAGAAT+TGG | 0.306114 | 2_2:-9116572 | None:intergenic |
| TGCTTGTATTATGTGAATAT+TGG | 0.306140 | 2_2:+9116516 | Msa0236190:CDS |
| ATGACTTGTTGGGTAGAATT+GGG | 0.322325 | 2_2:-9116571 | None:intergenic |
| TGTTGAACAAGAAATTGATA+TGG | 0.325815 | 2_2:+9117405 | Msa0236190:CDS |
| ACAAGAAATTGATATGGAAT+TGG | 0.334843 | 2_2:+9117411 | Msa0236190:CDS |
| GGGCTATAAGTATGACTTGT+TGG | 0.353512 | 2_2:-9116582 | None:intergenic |
| AACTATGCATCTGGCGGAGC+TGG | 0.371338 | 2_2:+9116270 | Msa0236190:CDS |
| CGAGAAAATATGTGTTAGTT+GGG | 0.371873 | 2_2:+9116774 | Msa0236190:CDS |
| GCGAGAAAATATGTGTTAGT+TGG | 0.388425 | 2_2:+9116773 | Msa0236190:CDS |
| CAGGGTTATGCTATTAGCTT+GGG | 0.390236 | 2_2:+9116405 | Msa0236190:intron |
| AAAATATGTGTTAGTTGGGT+TGG | 0.414588 | 2_2:+9116778 | Msa0236190:CDS |
| AGAGCTTCTGCATACTGCTC+AGG | 0.428284 | 2_2:-9116603 | None:intergenic |
| AAATATGTGTTAGTTGGGTT+GGG | 0.439264 | 2_2:+9116779 | Msa0236190:CDS |
| TAAAATTATTACCATCTGAC+AGG | 0.445247 | 2_2:-9116925 | None:intergenic |
| CATAATACAAGCATTTGTTA+AGG | 0.448958 | 2_2:-9116506 | None:intergenic |
| CATGGGAGATAAGGAGACTT+TGG | 0.454832 | 2_2:+9114113 | None:intergenic |
| TCTCAAATTGCTAGCAGACT+TGG | 0.466523 | 2_2:+9116459 | Msa0236190:CDS |
| ACAGGGTTATGCTATTAGCT+TGG | 0.468271 | 2_2:+9116404 | Msa0236190:intron |
| GGCTATAAGTATGACTTGTT+GGG | 0.471958 | 2_2:-9116581 | None:intergenic |
| TGACTTGTTGGGTAGAATTG+GGG | 0.484356 | 2_2:-9116570 | None:intergenic |
| ACAAGGTGCTTAATATCCAT+TGG | 0.485696 | 2_2:-9117385 | None:intergenic |
| GATGGGAGATAAGGAGACTT+TGG | 0.489403 | 2_2:+9114161 | Msa0236190:CDS |
| AAAGGTGTGAACTATGCATC+TGG | 0.495068 | 2_2:+9116261 | Msa0236190:CDS |
| ATGATTCATCTAATAATTCA+GGG | 0.511656 | 2_2:+9117353 | Msa0236190:CDS |
| AGCTTGTAATTGAAAAGTGA+CGG | 0.519564 | 2_2:-9116818 | None:intergenic |
| CAAATTGCTAGCAGACTTGG+AGG | 0.523023 | 2_2:+9116462 | Msa0236190:CDS |
| GTAGCTCGACATGGGAGATA+AGG | 0.524996 | 2_2:+9114104 | None:intergenic |
| AAGGAGGTCGATGGGAGATA+AGG | 0.532370 | 2_2:+9114152 | Msa0236190:CDS |
| GGTACCAAGCCTCGGTGGGA+TGG | 0.539300 | 2_2:-9117309 | None:intergenic |
| TTCAGGGTTCACTTATCCAA+TGG | 0.539520 | 2_2:+9117369 | Msa0236190:CDS |
| TTACAAGCTTAAATCTCTAG+TGG | 0.542536 | 2_2:+9116832 | Msa0236190:CDS |
| GAGTCAGATGCCCTGTCAGA+TGG | 0.545719 | 2_2:+9116914 | Msa0236190:CDS |
| CCACCATTTGCAAACATCAG+TGG | 0.549194 | 2_2:+9116225 | Msa0236190:CDS |
| AATTCGAATGGAGACATACT+CGG | 0.551240 | 2_2:+9116293 | Msa0236190:CDS |
| AAGTCCATCCCACCGAGGCT+TGG | 0.557254 | 2_2:+9117305 | Msa0236190:intron |
| ACGTGACGGAAGGAGGTCGA+TGG | 0.557467 | 2_2:+9114143 | Msa0236190:CDS |
| ACATTCTTGTTGCAATGAGA+AGG | 0.562394 | 2_2:-9117330 | None:intergenic |
| AATGGAGACATACTCGGCTA+AGG | 0.563484 | 2_2:+9116299 | Msa0236190:CDS |
| GAACCACTGATGTTTGCAAA+TGG | 0.568931 | 2_2:-9116228 | None:intergenic |
| TTCCAGGCTCTACATGACAT+TGG | 0.569074 | 2_2:+9116749 | Msa0236190:intron |
| CGTGACGGAAGGAGGTCGAT+GGG | 0.570520 | 2_2:+9114144 | Msa0236190:CDS |
| TGGCGGAGCTGGAATTCGAA+TGG | 0.584028 | 2_2:+9116281 | Msa0236190:CDS |
| CCACTGATGTTTGCAAATGG+TGG | 0.591872 | 2_2:-9116225 | None:intergenic |
| GAGCTTCTGCATACTGCTCA+GGG | 0.600756 | 2_2:-9116602 | None:intergenic |
| AGAAGGTACCAAGCCTCGGT+GGG | 0.623013 | 2_2:-9117313 | None:intergenic |
| TGGAGAGCACACGTGACGGA+AGG | 0.624288 | 2_2:+9114133 | Msa0236190:CDS |
| AATGAGAAGGTACCAAGCCT+CGG | 0.626887 | 2_2:-9117317 | None:intergenic |
| AGAGCACACGTGACGGAAGG+AGG | 0.629200 | 2_2:+9114136 | Msa0236190:CDS |
| TATCAATTTCTTGTTCAACA+AGG | 0.630157 | 2_2:-9117402 | None:intergenic |
| GAGAAGGTACCAAGCCTCGG+TGG | 0.634613 | 2_2:-9117314 | None:intergenic |
| ACTTTGGAGAGCACACGTGA+CGG | 0.650614 | 2_2:+9114129 | Msa0236190:CDS |
| AGTGGTTCAGACATACTCAA+AGG | 0.657804 | 2_2:+9116243 | Msa0236190:CDS |
| AAAATTATTACCATCTGACA+GGG | 0.687534 | 2_2:-9116924 | None:intergenic |
| GGTGTGAACTATGCATCTGG+CGG | 0.691974 | 2_2:+9116264 | Msa0236190:CDS |
| GGATGAAGTCCATCCCACCG+AGG | 0.748304 | 2_2:+9117300 | Msa0236190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATCAGTTTTTTTTT+GGG | - | chr2_2:9115059-9115078 | None:intergenic | 10.0% |
| !!! | AAAAAAAATCAGTTTTTTTT+TGG | - | chr2_2:9115060-9115079 | None:intergenic | 10.0% |
| !! | ATTCAATATATATAATATGA+TGG | + | chr2_2:9116708-9116727 | Msa0236190:intron | 10.0% |
| !! | ACAATATATTGAAAAAGTTA+AGG | + | chr2_2:9114231-9114250 | Msa0236190:intron | 15.0% |
| !! | ATATCATTACTCAAATTAAT+AGG | - | chr2_2:9115266-9115285 | None:intergenic | 15.0% |
| !! | TTTCCTTAAAAGAATTTGAA+GGG | - | chr2_2:9114339-9114358 | None:intergenic | 20.0% |
| !!! | TTTTAAGGAAACATTTTAGA+TGG | + | chr2_2:9114348-9114367 | Msa0236190:intron | 20.0% |
| !!! | AAAACACACATTTCAATTTT+CGG | - | chr2_2:9115107-9115126 | None:intergenic | 20.0% |
| !! | AAATCACAAGCAAAAAAATA+AGG | + | chr2_2:9115451-9115470 | Msa0236190:intron | 20.0% |
| !! | ATTAGTTAGATTGGAAAAAT+GGG | - | chr2_2:9115646-9115665 | None:intergenic | 20.0% |
| !! | TATGATTCATCTAATAATTC+AGG | + | chr2_2:9117352-9117371 | Msa0236190:CDS | 20.0% |
| !! | ATGATTCATCTAATAATTCA+GGG | + | chr2_2:9117353-9117372 | Msa0236190:CDS | 20.0% |
| ! | GTTTCCTTAAAAGAATTTGA+AGG | - | chr2_2:9114340-9114359 | None:intergenic | 25.0% |
| ! | TTAATTCCTAGATTAGATCT+AGG | - | chr2_2:9115418-9115437 | None:intergenic | 25.0% |
| ! | TCTTACAAAGAGATACAAAT+AGG | + | chr2_2:9115570-9115589 | Msa0236190:intron | 25.0% |
| ! | CATTAGTTAGATTGGAAAAA+TGG | - | chr2_2:9115647-9115666 | None:intergenic | 25.0% |
| !! | CATAATACAAGCATTTGTTA+AGG | - | chr2_2:9116509-9116528 | None:intergenic | 25.0% |
| ! | TGCTTGTATTATGTGAATAT+TGG | + | chr2_2:9116516-9116535 | Msa0236190:CDS | 25.0% |
| ! | AGAGTTATCTTTGAATTTAC+TGG | + | chr2_2:9116632-9116651 | Msa0236190:CDS | 25.0% |
| ! | AAAATTATTACCATCTGACA+GGG | - | chr2_2:9116927-9116946 | None:intergenic | 25.0% |
| ! | TAAAATTATTACCATCTGAC+AGG | - | chr2_2:9116928-9116947 | None:intergenic | 25.0% |
| ! | TATCAATTTCTTGTTCAACA+AGG | - | chr2_2:9117405-9117424 | None:intergenic | 25.0% |
| ! | TGTTGAACAAGAAATTGATA+TGG | + | chr2_2:9117405-9117424 | Msa0236190:CDS | 25.0% |
| ! | ACAAGAAATTGATATGGAAT+TGG | + | chr2_2:9117411-9117430 | Msa0236190:CDS | 25.0% |
| ! | TAGCCCTTCAAATTCTTTTA+AGG | + | chr2_2:9114333-9114352 | Msa0236190:intron | 30.0% |
| ! | GAAACATTTTAGATGGTCAT+TGG | + | chr2_2:9114355-9114374 | Msa0236190:intron | 30.0% |
| TCATGATCGAGTTTAAACTT+CGG | - | chr2_2:9114526-9114545 | None:intergenic | 30.0% | |
| !!! | ATCAGTTTTGTTAAAACTCG+TGG | + | chr2_2:9114574-9114593 | Msa0236190:intron | 30.0% |
| TAAAATGTAAGGACCAAAAG+TGG | - | chr2_2:9114966-9114985 | None:intergenic | 30.0% | |
| AAAATATGAAGGCTAAACGT+GGG | - | chr2_2:9114994-9115013 | None:intergenic | 30.0% | |
| AAAAATATGAAGGCTAAACG+TGG | - | chr2_2:9114995-9115014 | None:intergenic | 30.0% | |
| !! | TATGATACTTGCTGTGAATA+TGG | + | chr2_2:9115300-9115319 | Msa0236190:intron | 30.0% |
| GCTTATGTTTACTTTGATTG+TGG | - | chr2_2:9115376-9115395 | None:intergenic | 30.0% | |
| TTGTAAGAACTCATTGATAG+TGG | - | chr2_2:9115558-9115577 | None:intergenic | 30.0% | |
| GGAAAAATGGGTAGAAATTA+AGG | - | chr2_2:9115634-9115653 | None:intergenic | 30.0% | |
| ! | GTCTTGTTCATTAGTTAGAT+TGG | - | chr2_2:9115655-9115674 | None:intergenic | 30.0% |
| GGAAACATTGTAAACAACTT+GGG | - | chr2_2:9115697-9115716 | None:intergenic | 30.0% | |
| AGGAAACATTGTAAACAACT+TGG | - | chr2_2:9115698-9115717 | None:intergenic | 30.0% | |
| TCTTTGATTAGAGTTCTCTT+GGG | - | chr2_2:9115723-9115742 | None:intergenic | 30.0% | |
| AATCAAAGGAGAGAACTTTA+GGG | - | chr2_2:9115753-9115772 | None:intergenic | 30.0% | |
| AAATCAAAGGAGAGAACTTT+AGG | - | chr2_2:9115754-9115773 | None:intergenic | 30.0% | |
| !!! | CGGACATAATGTTATTTTTG+CGG | - | chr2_2:9116383-9116402 | None:intergenic | 30.0% |
| AAATAACATTATGTCCGTAC+AGG | + | chr2_2:9116386-9116405 | Msa0236190:intron | 30.0% | |
| AATAACATTATGTCCGTACA+GGG | + | chr2_2:9116387-9116406 | Msa0236190:intron | 30.0% | |
| ! | TAAAACACTGAGATTTTGAG+TGG | - | chr2_2:9116665-9116684 | None:intergenic | 30.0% |
| CAATTAGTGAAAGAAAGCAA+GGG | - | chr2_2:9116688-9116707 | None:intergenic | 30.0% | |
| TCAATTAGTGAAAGAAAGCA+AGG | - | chr2_2:9116689-9116708 | None:intergenic | 30.0% | |
| TATTAGTTCCATTTGATTCC+AGG | + | chr2_2:9116733-9116752 | Msa0236190:intron | 30.0% | |
| CGAGAAAATATGTGTTAGTT+GGG | + | chr2_2:9116774-9116793 | Msa0236190:CDS | 30.0% | |
| AAAATATGTGTTAGTTGGGT+TGG | + | chr2_2:9116778-9116797 | Msa0236190:CDS | 30.0% | |
| AAATATGTGTTAGTTGGGTT+GGG | + | chr2_2:9116779-9116798 | Msa0236190:CDS | 30.0% | |
| AGCTTGTAATTGAAAAGTGA+CGG | - | chr2_2:9116821-9116840 | None:intergenic | 30.0% | |
| TTACAAGCTTAAATCTCTAG+TGG | + | chr2_2:9116832-9116851 | Msa0236190:CDS | 30.0% | |
| TAGCTACAGTTTAATGTGAT+TGG | + | chr2_2:9117028-9117047 | Msa0236190:intron | 30.0% | |
| !!! | TCAATGAATCTCAGGTTTTT+TGG | + | chr2_2:9117086-9117105 | Msa0236190:intron | 30.0% |
| TAGTCACTTCTATTATAGCA+TGG | - | chr2_2:9117271-9117290 | None:intergenic | 30.0% | |
| !! | AAGTGGTGTTGGAAATCTTT+TGG | - | chr2_2:9114949-9114968 | None:intergenic | 35.0% |
| ! | AAGATTTCCAACACCACTTT+TGG | + | chr2_2:9114950-9114969 | Msa0236190:intron | 35.0% |
| !! | AAGCTTTATTTCCTACAACC+TGG | + | chr2_2:9115130-9115149 | Msa0236190:intron | 35.0% |
| !! | AGCTTTATTTCCTACAACCT+GGG | + | chr2_2:9115131-9115150 | Msa0236190:intron | 35.0% |
| AAGTCAAGAGACATGCATTT+CGG | - | chr2_2:9115169-9115188 | None:intergenic | 35.0% | |
| ! | TGACTTTATTTCCTACAACC+TGG | + | chr2_2:9115183-9115202 | Msa0236190:intron | 35.0% |
| ! | GACTTTATTTCCTACAACCT+GGG | + | chr2_2:9115184-9115203 | Msa0236190:intron | 35.0% |
| ! | ACTTTATTTCCTACAACCTG+GGG | + | chr2_2:9115185-9115204 | Msa0236190:intron | 35.0% |
| AACTCAAGAGACATGCATTT+CGG | - | chr2_2:9115222-9115241 | None:intergenic | 35.0% | |
| TATGGACTTAAAACTCACAC+AGG | + | chr2_2:9115318-9115337 | Msa0236190:intron | 35.0% | |
| ATGGACTTAAAACTCACACA+GGG | + | chr2_2:9115319-9115338 | Msa0236190:intron | 35.0% | |
| ACAACACCTAGATCTAATCT+AGG | + | chr2_2:9115409-9115428 | Msa0236190:intron | 35.0% | |
| CAAAGATTGTTTACCCAGTT+CGG | + | chr2_2:9115495-9115514 | Msa0236190:intron | 35.0% | |
| !! | AGAACTCATTGATAGTGGAT+TGG | - | chr2_2:9115553-9115572 | None:intergenic | 35.0% |
| GTCTTTGATTAGAGTTCTCT+TGG | - | chr2_2:9115724-9115743 | None:intergenic | 35.0% | |
| AGGAAAACTTGGGAAATCAA+AGG | - | chr2_2:9115767-9115786 | None:intergenic | 35.0% | |
| TGAAGCTCTCAATCAAAATC+TGG | + | chr2_2:9115791-9115810 | Msa0236190:intron | 35.0% | |
| !! | ACATGATTTTGACAGTTGCA+GGG | - | chr2_2:9115837-9115856 | None:intergenic | 35.0% |
| GGATAAGATTTGTGTACCTT+AGG | - | chr2_2:9115899-9115918 | None:intergenic | 35.0% | |
| GGAAATCGTGAAACGATTTA+TGG | - | chr2_2:9115920-9115939 | None:intergenic | 35.0% | |
| AATTCGAATGGAGACATACT+CGG | + | chr2_2:9116293-9116312 | Msa0236190:CDS | 35.0% | |
| !! | ATGACTTGTTGGGTAGAATT+GGG | - | chr2_2:9116574-9116593 | None:intergenic | 35.0% |
| !! | TATGACTTGTTGGGTAGAAT+TGG | - | chr2_2:9116575-9116594 | None:intergenic | 35.0% |
| !! | GGCTATAAGTATGACTTGTT+GGG | - | chr2_2:9116584-9116603 | None:intergenic | 35.0% |
| GCGAGAAAATATGTGTTAGT+TGG | + | chr2_2:9116773-9116792 | Msa0236190:CDS | 35.0% | |
| ! | CAGTTTAATGTGATTGGTTG+AGG | + | chr2_2:9117034-9117053 | Msa0236190:intron | 35.0% |
| ! | TTATAGCATGGCTTTTCATC+AGG | - | chr2_2:9117259-9117278 | None:intergenic | 35.0% |
| ! | ATAGAAGTGACTATGCGTTT+TGG | + | chr2_2:9117278-9117297 | Msa0236190:intron | 35.0% |
| ! | TAGAAGTGACTATGCGTTTT+GGG | + | chr2_2:9117279-9117298 | Msa0236190:intron | 35.0% |
| ACATTCTTGTTGCAATGAGA+AGG | - | chr2_2:9117333-9117352 | None:intergenic | 35.0% | |
| ! | ACAAGGTGCTTAATATCCAT+TGG | - | chr2_2:9117388-9117407 | None:intergenic | 35.0% |
| ! | CGTGGGTTGACTAAAATGTA+AGG | - | chr2_2:9114977-9114996 | None:intergenic | 40.0% |
| !! | GCTTTATTTCCTACAACCTG+GGG | + | chr2_2:9115132-9115151 | Msa0236190:intron | 40.0% |
| CGAACTGGGTAAACAATCTT+TGG | - | chr2_2:9115497-9115516 | None:intergenic | 40.0% | |
| GATTAGAGTTCTCTTGGGTT+AGG | - | chr2_2:9115718-9115737 | None:intergenic | 40.0% | |
| GCTTCAAGAGAGGAAAACTT+GGG | - | chr2_2:9115777-9115796 | None:intergenic | 40.0% | |
| AGCTTCAAGAGAGGAAAACT+TGG | - | chr2_2:9115778-9115797 | None:intergenic | 40.0% | |
| TTGATTGAGAGCTTCAAGAG+AGG | - | chr2_2:9115787-9115806 | None:intergenic | 40.0% | |
| !! | GACATGATTTTGACAGTTGC+AGG | - | chr2_2:9115838-9115857 | None:intergenic | 40.0% |
| CAATTGCCAAAATCGTGTCA+CGG | + | chr2_2:9115859-9115878 | Msa0236190:intron | 40.0% | |
| ! | AATGAACCGTGACACGATTT+TGG | - | chr2_2:9115868-9115887 | None:intergenic | 40.0% |
| GAAGTTGAGCTGCAATCAAA+AGG | - | chr2_2:9116185-9116204 | None:intergenic | 40.0% | |
| TTGATTGCAGCTCAACTTCT+TGG | + | chr2_2:9116186-9116205 | Msa0236190:intron | 40.0% | |
| GAACCACTGATGTTTGCAAA+TGG | - | chr2_2:9116231-9116250 | None:intergenic | 40.0% | |
| AGTGGTTCAGACATACTCAA+AGG | + | chr2_2:9116243-9116262 | Msa0236190:CDS | 40.0% | |
| ! | AAAGGTGTGAACTATGCATC+TGG | + | chr2_2:9116261-9116280 | Msa0236190:CDS | 40.0% |
| GCTAATAGCATAACCCTGTA+CGG | - | chr2_2:9116403-9116422 | None:intergenic | 40.0% | |
| ACAGGGTTATGCTATTAGCT+TGG | + | chr2_2:9116404-9116423 | Msa0236190:intron | 40.0% | |
| ! | CAGGGTTATGCTATTAGCTT+GGG | + | chr2_2:9116405-9116424 | Msa0236190:intron | 40.0% |
| TCTCAAATTGCTAGCAGACT+TGG | + | chr2_2:9116459-9116478 | Msa0236190:CDS | 40.0% | |
| !! | TGACTTGTTGGGTAGAATTG+GGG | - | chr2_2:9116573-9116592 | None:intergenic | 40.0% |
| ! | GGGCTATAAGTATGACTTGT+TGG | - | chr2_2:9116585-9116604 | None:intergenic | 40.0% |
| ATGTAGAGCCTGGAATCAAA+TGG | - | chr2_2:9116744-9116763 | None:intergenic | 40.0% | |
| CTGCATGTTCAATGAATCTC+AGG | + | chr2_2:9117078-9117097 | Msa0236190:intron | 40.0% | |
| ! | TTCAACCTTGATGGACAACA+AGG | - | chr2_2:9117123-9117142 | None:intergenic | 40.0% |
| TGTTGTCCATCAAGGTTGAA+TGG | + | chr2_2:9117123-9117142 | Msa0236190:intron | 40.0% | |
| TTCAGGGTTCACTTATCCAA+TGG | + | chr2_2:9117369-9117388 | Msa0236190:CDS | 40.0% | |
| GATGGGAGATAAGGAGACTT+TGG | + | chr2_2:9114161-9114180 | Msa0236190:CDS | 45.0% | |
| GTAAGGACCAAAAGTGGTGT+TGG | - | chr2_2:9114960-9114979 | None:intergenic | 45.0% | |
| ! | ATGTCTTTTCCCCAGGTTGT+AGG | - | chr2_2:9115144-9115163 | None:intergenic | 45.0% |
| ! | TTCGGATATGTCTTTTCCCC+AGG | - | chr2_2:9115151-9115170 | None:intergenic | 45.0% |
| ! | ATGTCTTTTCCCCAGGTTGT+AGG | - | chr2_2:9115144-9115163 | None:intergenic | 45.0% |
| ! | TTCGGATATGTCTTTTCCCC+AGG | - | chr2_2:9115151-9115170 | None:intergenic | 45.0% |
| AAAACTCACACAGGGATGTG+TGG | + | chr2_2:9115327-9115346 | Msa0236190:intron | 45.0% | |
| !! | GGAGAGAACTTTAGGGTTGA+GGG | - | chr2_2:9115746-9115765 | None:intergenic | 45.0% |
| !! | AGGAGAGAACTTTAGGGTTG+AGG | - | chr2_2:9115747-9115766 | None:intergenic | 45.0% |
| GGTTCATTGTGTACGACCTA+AGG | + | chr2_2:9115880-9115899 | Msa0236190:intron | 45.0% | |
| GGCAAAACGTGACACGATTT+GGG | - | chr2_2:9115941-9115960 | None:intergenic | 45.0% | |
| AGGCAAAACGTGACACGATT+TGG | - | chr2_2:9115942-9115961 | None:intergenic | 45.0% | |
| TCCAGAACCAACCATGCATT+CGG | + | chr2_2:9115961-9115980 | Msa0236190:intron | 45.0% | |
| GATTTCTGATGCCGAATGCA+TGG | - | chr2_2:9115975-9115994 | None:intergenic | 45.0% | |
| CGAAGAATCGTGACACGATT+TGG | - | chr2_2:9116010-9116029 | None:intergenic | 45.0% | |
| CCACTGATGTTTGCAAATGG+TGG | - | chr2_2:9116228-9116247 | None:intergenic | 45.0% | |
| CCACCATTTGCAAACATCAG+TGG | + | chr2_2:9116225-9116244 | Msa0236190:CDS | 45.0% | |
| AATGGAGACATACTCGGCTA+AGG | + | chr2_2:9116299-9116318 | Msa0236190:CDS | 45.0% | |
| CAAATTGCTAGCAGACTTGG+AGG | + | chr2_2:9116462-9116481 | Msa0236190:CDS | 45.0% | |
| TTCCAGGCTCTACATGACAT+TGG | + | chr2_2:9116749-9116768 | Msa0236190:intron | 45.0% | |
| ! | ATGCTCCTTGTTGTCCATCA+AGG | + | chr2_2:9117115-9117134 | Msa0236190:intron | 45.0% |
| !! | AATGAGAAGGTACCAAGCCT+CGG | - | chr2_2:9117320-9117339 | None:intergenic | 45.0% |
| !! | TAAGAAAATAAATAAATTAA+AGG | + | chr2_2:9114843-9114862 | Msa0236190:intron | 5.0% |
| !! | AAGAAAATAAATAAATTAAA+GGG | + | chr2_2:9114844-9114863 | Msa0236190:intron | 5.0% |
| !! | AAAATTTATTAAAAATATGA+AGG | - | chr2_2:9115005-9115024 | None:intergenic | 5.0% |
| ! | ACTTTGGAGAGCACACGTGA+CGG | + | chr2_2:9114129-9114148 | Msa0236190:CDS | 50.0% |
| AAGGAGGTCGATGGGAGATA+AGG | + | chr2_2:9114152-9114171 | Msa0236190:CDS | 50.0% | |
| ! | ACTTTGGAGAGCACACGTGA+CGG | + | chr2_2:9114129-9114148 | Msa0236190:CDS | 50.0% |
| !! | AGGTCAAGTTGGACCGAACT+GGG | - | chr2_2:9115511-9115530 | None:intergenic | 50.0% |
| AGTTCGGTCCAACTTGACCT+GGG | + | chr2_2:9115511-9115530 | Msa0236190:intron | 50.0% | |
| !! | GAATGCATGGTTGGTTCTGG+AGG | - | chr2_2:9115962-9115981 | None:intergenic | 50.0% |
| TCTGATGCCGAATGCATGGT+TGG | - | chr2_2:9115971-9115990 | None:intergenic | 50.0% | |
| GGTGTGAACTATGCATCTGG+CGG | + | chr2_2:9116264-9116283 | Msa0236190:CDS | 50.0% | |
| GAGCTTCTGCATACTGCTCA+GGG | - | chr2_2:9116605-9116624 | None:intergenic | 50.0% | |
| AGAGCTTCTGCATACTGCTC+AGG | - | chr2_2:9116606-9116625 | None:intergenic | 50.0% | |
| CTCCAATGTCATGTAGAGCC+TGG | - | chr2_2:9116754-9116773 | None:intergenic | 50.0% | |
| CACAGGGATGTGTGGAGCAA+AGG | + | chr2_2:9115335-9115354 | Msa0236190:intron | 55.0% | |
| !! | CAGGTCAAGTTGGACCGAAC+TGG | - | chr2_2:9115512-9115531 | None:intergenic | 55.0% |
| CAGTTCGGTCCAACTTGACC+TGG | + | chr2_2:9115510-9115529 | Msa0236190:intron | 55.0% | |
| GTTCGGTCCAACTTGACCTG+GGG | + | chr2_2:9115512-9115531 | Msa0236190:intron | 55.0% | |
| TTCGGTCCAACTTGACCTGG+GGG | + | chr2_2:9115513-9115532 | Msa0236190:intron | 55.0% | |
| ATCTCTCCCCCAGGTCAAGT+TGG | - | chr2_2:9115522-9115541 | None:intergenic | 55.0% | |
| GAGAGATCAATCTCTCCCCC+AGG | - | chr2_2:9115531-9115550 | None:intergenic | 55.0% | |
| ! | GCCGAATGCATGGTTGGTTC+TGG | - | chr2_2:9115965-9115984 | None:intergenic | 55.0% |
| AACTATGCATCTGGCGGAGC+TGG | + | chr2_2:9116270-9116289 | Msa0236190:CDS | 55.0% | |
| TGGCGGAGCTGGAATTCGAA+TGG | + | chr2_2:9116281-9116300 | Msa0236190:CDS | 55.0% | |
| GAGTCAGATGCCCTGTCAGA+TGG | + | chr2_2:9116914-9116933 | Msa0236190:CDS | 55.0% | |
| !! | AGAAGGTACCAAGCCTCGGT+GGG | - | chr2_2:9117316-9117335 | None:intergenic | 55.0% |
| ! | TGGAGAGCACACGTGACGGA+AGG | + | chr2_2:9114133-9114152 | Msa0236190:CDS | 60.0% |
| ! | AGAGCACACGTGACGGAAGG+AGG | + | chr2_2:9114136-9114155 | Msa0236190:CDS | 60.0% |
| ! | ACGTGACGGAAGGAGGTCGA+TGG | + | chr2_2:9114143-9114162 | Msa0236190:CDS | 60.0% |
| ! | CGTGACGGAAGGAGGTCGAT+GGG | + | chr2_2:9114144-9114163 | Msa0236190:CDS | 60.0% |
| ! | TGGAGAGCACACGTGACGGA+AGG | + | chr2_2:9114133-9114152 | Msa0236190:CDS | 60.0% |
| ! | AGAGCACACGTGACGGAAGG+AGG | + | chr2_2:9114136-9114155 | Msa0236190:CDS | 60.0% |
| GGATGAAGTCCATCCCACCG+AGG | + | chr2_2:9117300-9117319 | Msa0236190:intron | 60.0% | |
| AAGTCCATCCCACCGAGGCT+TGG | + | chr2_2:9117305-9117324 | Msa0236190:intron | 60.0% | |
| !! | GAGAAGGTACCAAGCCTCGG+TGG | - | chr2_2:9117317-9117336 | None:intergenic | 60.0% |
| GGTACCAAGCCTCGGTGGGA+TGG | - | chr2_2:9117312-9117331 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 9114114 | 9117447 | 9114114 | ID=Msa0236190;Name=Msa0236190 |
| chr2_2 | mRNA | 9114114 | 9117447 | 9114114 | ID=Msa0236190-mRNA-1;Parent=Msa0236190;Name=Msa0236190-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.25|0|0.6|1|1|5|0|256 |
| chr2_2 | exon | 9114114 | 9114192 | 9114114 | ID=Msa0236190-mRNA-1:exon:3944;Parent=Msa0236190-mRNA-1 |
| chr2_2 | exon | 9116196 | 9116320 | 9116196 | ID=Msa0236190-mRNA-1:exon:3945;Parent=Msa0236190-mRNA-1 |
| chr2_2 | exon | 9116408 | 9116653 | 9116408 | ID=Msa0236190-mRNA-1:exon:3946;Parent=Msa0236190-mRNA-1 |
| chr2_2 | exon | 9116755 | 9116935 | 9116755 | ID=Msa0236190-mRNA-1:exon:3947;Parent=Msa0236190-mRNA-1 |
| chr2_2 | exon | 9117308 | 9117447 | 9117308 | ID=Msa0236190-mRNA-1:exon:3948;Parent=Msa0236190-mRNA-1 |
| chr2_2 | CDS | 9114114 | 9114192 | 9114114 | ID=Msa0236190-mRNA-1:cds;Parent=Msa0236190-mRNA-1 |
| chr2_2 | CDS | 9116196 | 9116320 | 9116196 | ID=Msa0236190-mRNA-1:cds;Parent=Msa0236190-mRNA-1 |
| chr2_2 | CDS | 9116408 | 9116653 | 9116408 | ID=Msa0236190-mRNA-1:cds;Parent=Msa0236190-mRNA-1 |
| chr2_2 | CDS | 9116755 | 9116935 | 9116755 | ID=Msa0236190-mRNA-1:cds;Parent=Msa0236190-mRNA-1 |
| chr2_2 | CDS | 9117308 | 9117447 | 9117308 | ID=Msa0236190-mRNA-1:cds;Parent=Msa0236190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
