AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0314590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314590 MtrunA17_Chr2g0284941 93.410 349 23 0 1 349 1 349 0.0 677
Msa0314590 MtrunA17_Chr2g0285001 77.089 371 63 3 1 349 1 371 0.0 566
Msa0314590 MtrunA17_Chr2g0284951 77.027 370 59 4 1 349 1 365 0.0 561
Msa0314590 MtrunA17_Chr2g0284991 74.387 367 73 2 1 346 1 367 0.0 558
Msa0314590 MtrunA17_Chr2g0284921 58.146 356 125 5 6 338 6 360 1.01e-132 383
Msa0314590 MtrunA17_Chr3g0085881 55.493 355 138 4 1 338 1 352 1.21e-126 367
Msa0314590 MtrunA17_Chr8g0380031 55.432 359 130 7 1 338 56 405 8.28e-124 362
Msa0314590 MtrunA17_Chr8g0380041 44.959 367 166 9 1 338 3 362 6.43e-99 296
Msa0314590 MtrunA17_Chr3g0086641 43.443 366 174 8 3 338 7 369 1.98e-94 285
Msa0314590 MtrunA17_Chr2g0285061 43.662 355 166 8 13 338 15 364 6.62e-93 281
Msa0314590 MtrunA17_Chr3g0077581 41.509 371 180 7 1 337 1 368 1.60e-87 268
Msa0314590 MtrunA17_Chr3g0077571 39.503 362 185 9 4 338 2 356 1.75e-75 236
Msa0314590 MtrunA17_Chr3g0131321 37.701 374 191 11 5 341 3 371 2.37e-69 222
Msa0314590 MtrunA17_Chr4g0017431 35.792 366 196 11 5 338 4 362 1.36e-61 201
Msa0314590 MtrunA17_Chr2g0284931 48.148 216 108 3 126 338 5 219 1.84e-57 186
Msa0314590 MtrunA17_Chr7g0275021 35.103 339 186 9 29 337 30 364 3.08e-53 179
Msa0314590 MtrunA17_Chr4g0068441 36.023 347 183 12 25 338 27 367 8.75e-53 178
Msa0314590 MtrunA17_Chr5g0434621 36.792 318 167 10 34 321 26 339 4.25e-52 176
Msa0314590 MtrunA17_Chr2g0294311 34.595 370 195 11 9 338 10 372 1.84e-51 175
Msa0314590 MtrunA17_Chr7g0275011 31.351 370 194 10 9 337 14 364 8.81e-50 170
Msa0314590 MtrunA17_Chr1g0189901 33.036 336 191 10 35 340 33 364 9.80e-50 170
Msa0314590 MtrunA17_Chr2g0294301 35.976 328 173 11 30 324 32 355 7.71e-49 168
Msa0314590 MtrunA17_Chr1g0182811 30.214 374 221 10 1 340 1 368 4.72e-48 166
Msa0314590 MtrunA17_Chr1g0189931 32.440 336 193 9 35 340 34 365 5.86e-48 166
Msa0314590 MtrunA17_Chr2g0285041 65.546 119 40 1 86 203 1 119 6.10e-48 159
Msa0314590 MtrunA17_Chr7g0275001 32.164 342 193 9 29 337 21 356 8.88e-47 162
Msa0314590 MtrunA17_Chr8g0374101 31.421 366 209 12 9 336 12 373 5.22e-46 160
Msa0314590 MtrunA17_Chr3g0085231 34.454 357 202 12 4 338 3 349 3.20e-44 155
Msa0314590 MtrunA17_Chr7g0274991 31.287 342 203 7 25 337 25 363 9.76e-44 154
Msa0314590 MtrunA17_Chr3g0099231 31.414 382 210 15 1 345 1 367 1.98e-43 154
Msa0314590 MtrunA17_Chr4g0060811 35.938 320 161 11 35 318 29 340 7.07e-43 152
Msa0314590 MtrunA17_Chr3g0092131 36.522 345 179 14 5 318 1 336 1.21e-42 151
Msa0314590 MtrunA17_Chr1g0189891 32.941 340 191 9 35 345 31 362 1.28e-42 151
Msa0314590 MtrunA17_Chr4g0008851 29.919 371 208 10 10 340 9 367 1.49e-42 151
Msa0314590 MtrunA17_Chr6g0457921 32.174 345 198 9 25 337 20 360 4.32e-42 150
Msa0314590 MtrunA17_Chr1g0156911 31.250 320 183 9 29 316 33 347 8.13e-42 149
Msa0314590 MtrunA17_Chr5g0444401 32.070 343 189 13 31 337 26 360 8.15e-42 149
Msa0314590 MtrunA17_Chr3g0099151 33.048 351 184 15 27 337 81 420 1.48e-41 150
Msa0314590 MtrunA17_Chr5g0396511 31.361 338 195 12 35 340 48 380 1.34e-39 144
Msa0314590 MtrunA17_Chr2g0320671 33.043 345 189 14 5 315 4 340 1.03e-38 140
Msa0314590 MtrunA17_Chr1g0156921 31.105 344 193 13 9 314 14 351 1.13e-38 141
Msa0314590 MtrunA17_Chr1g0156891 32.353 340 179 13 13 311 20 349 1.47e-38 140
Msa0314590 MtrunA17_Chr3g0099161 33.521 355 176 15 27 337 86 424 2.79e-38 141
Msa0314590 MtrunA17_Chr5g0420811 30.960 323 176 12 29 319 29 336 1.14e-37 138
Msa0314590 MtrunA17_Chr7g0215961 29.730 333 187 10 35 337 35 350 2.39e-37 137
Msa0314590 MtrunA17_Chr1g0156901 29.630 351 193 14 3 311 17 355 3.78e-37 137
Msa0314590 MtrunA17_Chr5g0405831 31.915 329 175 11 31 320 41 359 8.45e-37 136
Msa0314590 MtrunA17_Chr3g0105401 30.029 343 200 11 8 318 8 342 1.05e-36 135
Msa0314590 MtrunA17_Chr5g0405821 32.923 325 178 11 31 320 41 360 1.13e-36 135
Msa0314590 MtrunA17_Chr8g0341001 29.912 341 200 12 13 318 10 346 1.13e-36 135
Msa0314590 MtrunA17_Chr2g0284981 73.418 79 21 0 268 346 9 87 2.12e-36 127
Msa0314590 MtrunA17_Chr8g0371491 30.347 346 197 11 11 320 14 351 2.72e-36 134
Msa0314590 MtrunA17_Chr2g0330781 31.579 323 180 10 31 318 29 345 2.73e-36 134
Msa0314590 MtrunA17_Chr5g0438621 29.683 347 197 13 4 315 6 340 7.24e-36 133
Msa0314590 MtrunA17_Chr8g0370951 29.167 360 209 13 4 323 1 354 1.46e-34 130
Msa0314590 MtrunA17_Chr5g0432101 30.368 326 187 11 28 318 28 348 1.60e-34 130
Msa0314590 MtrunA17_Chr1g0156931 30.671 313 179 10 31 311 39 345 1.75e-34 129
Msa0314590 MtrunA17_Chr4g0027521 31.861 317 177 10 28 309 22 334 1.85e-34 129
Msa0314590 MtrunA17_Chr3g0142941 29.653 317 178 9 31 311 45 352 1.40e-33 127
Msa0314590 MtrunA17_Chr4g0046151 27.299 348 205 12 13 317 15 357 5.91e-33 125
Msa0314590 MtrunA17_Chr3g0142921 30.696 316 175 11 32 311 35 342 7.73e-33 125
Msa0314590 MtrunA17_Chr3g0120861 30.031 323 188 11 26 315 31 348 9.61e-33 125
Msa0314590 MtrunA17_Chr2g0301641 30.114 352 190 14 34 343 44 381 2.52e-32 124
Msa0314590 MtrunA17_Chr5g0438631 28.739 341 201 10 1 308 1 332 2.69e-32 123
Msa0314590 MtrunA17_Chr5g0438641 31.230 317 172 15 29 308 28 335 7.96e-32 122
Msa0314590 MtrunA17_Chr8g0349321 29.834 362 203 14 14 339 19 365 9.86e-32 122
Msa0314590 MtrunA17_Chr8g0349341 30.663 362 200 15 14 339 19 365 3.75e-31 120
Msa0314590 MtrunA17_Chr1g0157001 30.383 339 189 13 38 336 41 372 9.04e-31 120
Msa0314590 MtrunA17_Chr8g0371471 28.291 357 215 13 3 322 6 358 2.80e-30 118
Msa0314590 MtrunA17_Chr5g0437421 28.923 325 188 9 25 311 24 343 2.97e-30 118
Msa0314590 MtrunA17_Chr8g0371481 27.933 358 216 13 3 322 6 359 1.48e-28 114
Msa0314590 MtrunA17_Chr2g0283191 28.000 325 187 10 29 311 34 353 3.51e-28 112
Msa0314590 MtrunA17_Chr8g0344931 28.451 355 206 12 16 338 22 360 3.56e-28 112
Msa0314590 MtrunA17_Chr8g0344941 29.607 331 186 12 33 325 41 362 5.41e-28 112
Msa0314590 MtrunA17_Chr7g0229591 34.359 195 121 5 10 201 7 197 5.63e-27 105
Msa0314590 MtrunA17_Chr6g0455661 28.571 245 145 5 121 338 230 471 9.80e-26 107
Msa0314590 MtrunA17_Chr6g0455661 47.748 111 47 3 32 142 30 129 1.05e-24 104
Msa0314590 MtrunA17_Chr8g0349301 33.495 206 121 6 14 217 19 210 2.17e-25 104
Msa0314590 MtrunA17_Chr6g0459921 28.333 240 142 5 126 338 124 360 6.63e-25 103
Msa0314590 MtrunA17_Chr6g0469511 44.444 126 64 4 18 139 15 138 5.53e-23 93.2
Msa0314590 MtrunA17_Chr2g0285051 70.968 62 18 0 26 87 29 90 7.02e-22 89.7
Msa0314590 MtrunA17_Chr4g0027561 41.739 115 64 2 10 121 7 121 1.69e-21 89.4
Msa0314590 MtrunA17_Chr8g0370981 31.278 227 135 7 9 222 19 237 3.66e-21 94.0
Msa0314590 MtrunA17_Chr8g0370971 42.500 120 61 3 10 121 14 133 2.51e-18 81.3
Msa0314590 MtrunA17_Chr2g0285031 50.667 75 37 0 268 342 7 81 2.70e-18 78.6
Msa0314590 MtrunA17_Chr1g0189921 47.191 89 45 2 35 121 33 121 4.58e-18 80.1
Msa0314590 MtrunA17_Chr2g0321991 45.745 94 46 3 27 116 27 119 5.21e-18 79.3
Msa0314590 MtrunA17_Chr2g0308201 49.398 83 41 1 4 86 7 88 2.60e-17 76.3
Msa0314590 MtrunA17_Chr6g0450721 25.989 354 193 15 23 331 23 352 6.63e-17 80.9
Msa0314590 MtrunA17_Chr8g0349331 24.561 342 178 11 34 339 36 333 2.16e-16 79.0
Msa0314590 MtrunA17_Chr1g0178931 25.157 318 174 14 34 311 38 331 3.43e-15 75.9
Msa0314590 MtrunA17_Chr1g0160031 25.137 366 207 12 1 309 1 356 6.73e-15 75.1
Msa0314590 MtrunA17_Chr6g0450731 24.633 341 202 13 23 322 23 349 6.78e-15 75.1
Msa0314590 MtrunA17_Chr1g0198351 26.462 325 161 18 34 311 44 337 4.21e-14 72.4
Msa0314590 MtrunA17_Chr1g0160011 25.862 232 145 8 9 231 25 238 1.01e-13 71.6
Msa0314590 MtrunA17_Chr2g0283511 27.671 365 201 19 6 318 5 358 1.95e-13 70.9
Msa0314590 MtrunA17_Chr3g0104821 24.484 339 193 12 34 320 45 372 2.85e-13 70.1
Msa0314590 MtrunA17_Chr1g0178941 23.602 322 182 9 34 311 41 342 6.09e-13 68.9
Msa0314590 MtrunA17_Chr4g0018561 42.466 73 41 1 10 81 7 79 1.75e-12 63.2
Msa0314590 MtrunA17_Chr1g0160101 21.543 376 227 9 9 330 18 379 2.67e-12 67.4
Msa0314590 MtrunA17_Chr3g0104801 36.842 95 57 2 33 125 44 137 3.05e-12 64.7
Msa0314590 MtrunA17_Chr2g0283501 26.016 246 155 8 3 235 7 238 2.47e-11 64.3
Msa0314590 MtrunA17_Chr8g0352901 23.446 354 208 14 9 309 4 347 4.11e-11 63.5
Msa0314590 MtrunA17_Chr1g0159991 25.217 230 154 6 9 229 12 232 5.17e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314590 AT1G29670.1 44.715 369 166 9 1 338 1 362 1.61e-101 304
Msa0314590 AT1G29670.2 44.715 369 166 9 1 338 69 430 1.83e-100 303
Msa0314590 AT1G29660.1 43.324 367 175 7 1 338 1 363 1.96e-98 296
Msa0314590 AT4G18970.1 44.807 337 155 7 31 338 26 360 3.07e-93 283
Msa0314590 AT5G45670.1 42.577 357 174 7 10 337 6 360 3.89e-93 282
Msa0314590 AT4G18970.2 44.807 337 155 7 31 338 26 360 4.87e-92 281
Msa0314590 AT1G33811.1 40.407 344 169 6 27 337 28 368 5.10e-85 262
Msa0314590 AT2G19010.1 41.840 337 159 6 8 320 10 333 4.58e-82 253
Msa0314590 AT2G19010.2 41.840 337 159 6 8 320 40 363 2.17e-81 253
Msa0314590 AT2G19050.1 42.038 314 150 6 30 319 28 333 1.21e-74 234
Msa0314590 AT1G71691.2 36.873 339 182 7 26 337 48 381 4.00e-71 226
Msa0314590 AT4G30140.1 40.122 329 165 4 30 337 30 347 6.50e-67 214
Msa0314590 AT2G19060.1 41.447 304 146 6 31 309 28 324 1.13e-66 214
Msa0314590 AT5G08460.1 35.561 374 197 11 1 336 15 382 8.61e-65 210
Msa0314590 AT2G19050.2 45.565 248 107 4 30 257 28 267 1.17e-64 206
Msa0314590 AT5G15720.1 38.109 349 178 10 23 338 20 363 1.46e-62 204
Msa0314590 AT1G71250.1 35.000 360 196 10 10 336 16 370 3.79e-56 187
Msa0314590 AT1G71691.3 39.841 251 129 4 26 257 48 295 8.45e-56 185
Msa0314590 AT3G50400.1 33.957 374 203 13 6 338 3 373 2.21e-50 172
Msa0314590 AT5G37690.1 34.177 316 174 10 34 319 28 339 4.73e-48 166
Msa0314590 AT4G28780.1 30.811 370 214 11 1 337 1 361 2.89e-47 164
Msa0314590 AT3G04290.1 33.432 338 173 10 35 333 31 355 8.55e-47 163
Msa0314590 AT5G15720.2 40.873 252 131 6 23 260 20 267 2.38e-46 160
Msa0314590 AT5G33370.1 31.967 366 194 11 14 337 8 360 3.26e-46 161
Msa0314590 AT1G71691.1 31.095 283 163 7 82 337 3 280 1.97e-45 157
Msa0314590 AT4G16230.1 43.119 218 114 5 9 223 11 221 3.31e-45 155
Msa0314590 AT2G23540.1 33.645 321 174 10 35 318 50 368 1.51e-44 157
Msa0314590 AT1G74460.1 37.812 320 149 14 35 315 25 333 4.02e-44 155
Msa0314590 AT5G18430.1 33.333 333 182 10 35 333 30 356 1.94e-42 151
Msa0314590 AT5G37690.2 32.278 316 172 11 34 319 28 331 2.67e-42 150
Msa0314590 AT3G43570.1 33.333 330 182 15 8 321 7 314 8.81e-41 145
Msa0314590 AT1G59406.1 32.378 349 187 14 9 321 8 343 3.94e-40 145
Msa0314590 AT1G59030.1 32.378 349 187 14 9 321 8 343 3.94e-40 145
Msa0314590 AT1G58725.1 32.378 349 187 14 9 321 8 343 3.94e-40 145
Msa0314590 AT5G42170.1 34.259 324 166 12 31 318 48 360 2.30e-39 143
Msa0314590 AT5G63170.1 29.394 330 195 9 9 311 4 322 2.33e-39 142
Msa0314590 AT1G75880.1 30.854 363 207 13 3 327 19 375 9.61e-39 142
Msa0314590 AT1G75880.2 30.854 363 206 13 3 327 19 374 1.69e-38 141
Msa0314590 AT1G75890.2 30.878 353 195 14 8 320 20 363 2.32e-38 140
Msa0314590 AT5G15720.3 34.286 280 148 9 92 338 56 332 2.36e-38 139
Msa0314590 AT1G75890.3 30.878 353 195 14 8 320 49 392 3.73e-38 140
Msa0314590 AT2G04570.1 31.214 346 198 11 10 322 7 345 1.75e-37 138
Msa0314590 AT5G55050.1 30.986 355 200 13 21 337 27 374 4.97e-37 137
Msa0314590 AT3G14820.1 32.407 324 175 12 29 318 28 341 5.27e-37 136
Msa0314590 AT5G41890.1 31.105 344 191 10 35 336 33 372 5.93e-37 137
Msa0314590 AT3G53100.1 31.195 343 187 11 14 318 11 342 7.04e-37 136
Msa0314590 AT1G75890.1 30.411 365 194 16 8 320 20 376 2.37e-36 135
Msa0314590 AT5G22810.1 32.479 351 190 14 8 318 7 350 9.51e-36 133
Msa0314590 AT1G20135.1 30.746 335 187 14 5 311 6 323 1.92e-35 132
Msa0314590 AT4G10950.2 29.118 340 204 11 31 338 69 403 2.01e-35 133
Msa0314590 AT1G58520.3 31.940 335 182 15 18 321 17 336 2.86e-35 132
Msa0314590 AT1G58525.1 31.940 335 182 15 18 321 17 336 2.86e-35 132
Msa0314590 AT1G20130.2 32.722 327 177 10 27 314 178 500 7.23e-35 134
Msa0314590 AT1G20130.1 32.722 327 177 10 27 314 198 520 9.41e-35 134
Msa0314590 AT1G73610.1 29.688 320 186 11 29 321 31 338 2.04e-34 129
Msa0314590 AT2G30310.1 30.612 343 187 13 9 311 11 342 2.61e-34 129
Msa0314590 AT2G30220.1 31.487 343 183 15 9 311 11 341 4.90e-34 129
Msa0314590 AT3G16370.1 30.435 322 185 12 31 318 28 344 7.69e-34 128
Msa0314590 AT5G03820.1 28.286 350 210 13 5 318 4 348 1.07e-33 128
Msa0314590 AT5G03820.2 28.286 350 210 13 5 318 32 376 1.89e-33 127
Msa0314590 AT4G10950.1 29.118 340 200 12 31 338 69 399 2.57e-33 127
Msa0314590 AT2G42990.1 28.267 329 198 10 29 324 24 347 1.89e-32 124
Msa0314590 AT2G31540.1 30.372 349 200 13 3 315 6 347 2.34e-32 124
Msa0314590 AT3G43550.1 35.398 226 127 8 8 229 7 217 4.25e-32 122
Msa0314590 AT5G33370.2 31.834 289 151 8 14 267 8 285 6.72e-32 122
Msa0314590 AT1G20132.1 30.000 330 177 12 32 320 60 376 1.27e-31 122
Msa0314590 AT2G03980.2 28.882 322 185 9 22 308 32 344 1.59e-31 122
Msa0314590 AT2G03980.3 28.882 322 185 9 22 308 32 344 1.59e-31 122
Msa0314590 AT2G03980.1 28.882 322 185 9 22 308 32 344 1.59e-31 122
Msa0314590 AT2G03980.4 28.882 322 185 9 22 308 32 344 1.59e-31 122
Msa0314590 AT4G26790.1 31.928 332 180 15 29 322 25 348 3.03e-31 121
Msa0314590 AT4G26790.2 31.928 332 180 15 29 322 25 348 3.03e-31 121
Msa0314590 AT5G03810.1 28.205 351 208 14 5 318 1 344 9.83e-31 120
Msa0314590 AT5G45960.1 28.743 334 195 12 27 321 41 370 1.51e-30 119
Msa0314590 AT2G24560.1 29.326 341 199 11 7 311 8 342 4.46e-30 118
Msa0314590 AT1G58430.1 29.360 344 194 14 7 311 10 343 4.84e-30 118
Msa0314590 AT1G23500.1 29.738 343 192 13 13 320 10 338 4.84e-30 117
Msa0314590 AT1G06990.1 27.964 329 192 10 29 320 33 353 7.12e-30 117
Msa0314590 AT1G75930.1 27.515 338 201 11 10 315 6 331 8.45e-30 117
Msa0314590 AT1G71120.1 28.367 349 199 13 29 341 27 360 2.20e-29 116
Msa0314590 AT5G45950.1 27.027 333 208 11 13 317 21 346 2.62e-29 116
Msa0314590 AT1G75900.1 28.902 346 199 11 10 318 20 355 4.52e-29 115
Msa0314590 AT1G53920.1 28.399 331 193 11 31 325 46 368 1.21e-26 109
Msa0314590 AT2G40250.1 26.852 324 193 10 31 316 34 351 1.55e-26 108
Msa0314590 AT1G75920.2 27.859 341 206 12 10 320 6 336 2.69e-26 107
Msa0314590 AT2G04020.2 29.032 310 182 11 22 320 32 314 7.80e-26 105
Msa0314590 AT1G20120.1 26.829 328 202 10 26 320 71 393 9.84e-26 107
Msa0314590 AT5G40990.1 27.882 373 218 13 7 338 10 372 4.01e-25 104
Msa0314590 AT2G24560.2 34.234 222 135 7 7 222 8 224 1.91e-24 102
Msa0314590 AT1G75910.1 28.923 325 188 12 32 324 27 340 4.46e-24 101
Msa0314590 AT2G04020.1 33.498 203 121 6 22 219 32 225 3.77e-23 97.4
Msa0314590 AT3G14225.2 27.123 365 211 14 15 338 22 372 8.00e-23 98.6
Msa0314590 AT1G75920.1 26.404 356 207 13 10 320 1 346 1.47e-22 97.4
Msa0314590 AT3G14225.1 26.975 367 213 14 15 338 22 376 1.96e-22 97.4
Msa0314590 AT4G16220.1 48.305 118 55 4 1 116 1 114 2.66e-21 92.0
Msa0314590 AT1G53990.1 27.083 384 212 15 4 341 5 366 2.78e-21 94.0
Msa0314590 AT1G53940.2 27.273 374 207 14 13 338 18 374 1.90e-19 89.0
Msa0314590 AT1G28570.1 27.520 367 189 16 9 315 8 357 5.48e-19 87.8
Msa0314590 AT1G75920.4 26.531 294 176 12 57 320 25 308 1.35e-17 82.8
Msa0314590 AT1G53940.1 31.034 232 131 9 13 230 18 234 4.05e-17 81.3
Msa0314590 AT5G03610.1 26.216 370 205 16 1 321 1 351 5.45e-17 81.6
Msa0314590 AT1G31550.1 31.841 201 111 9 34 221 37 224 7.82e-16 78.6
Msa0314590 AT1G31550.2 31.841 201 111 9 34 221 37 224 8.33e-16 78.2
Msa0314590 AT3G09930.2 26.032 315 174 16 34 308 40 335 1.79e-15 77.0
Msa0314590 AT3G09930.1 26.032 315 174 16 34 308 40 335 1.79e-15 77.0
Msa0314590 AT2G27360.1 27.507 349 176 16 29 315 24 357 6.20e-15 75.9
Msa0314590 AT1G28580.1 25.843 356 173 16 26 315 30 360 1.02e-14 75.1
Msa0314590 AT1G54020.2 25.474 369 213 18 3 337 7 347 2.03e-14 73.9
Msa0314590 AT4G16233.1 35.537 121 66 5 230 341 15 132 4.32e-14 68.9
Msa0314590 AT1G28600.1 24.868 378 201 18 29 344 22 378 7.89e-14 72.4
Msa0314590 AT1G28610.1 30.052 193 108 10 1 179 4 183 3.55e-13 68.9
Msa0314590 AT1G28600.2 30.247 162 89 8 29 173 22 176 1.51e-12 66.6
Msa0314590 AT3G27950.1 23.483 379 209 12 3 322 2 358 2.01e-12 68.2
Msa0314590 AT1G28660.1 28.079 203 117 9 34 221 36 224 6.89e-12 66.6
Msa0314590 AT3G14220.1 24.138 348 209 12 25 337 24 351 9.67e-12 65.9
Msa0314590 AT1G28670.1 26.295 251 152 12 1 233 5 240 9.68e-12 65.9
Msa0314590 AT1G67830.1 25.000 344 202 13 26 318 23 361 1.22e-11 65.9
Msa0314590 AT1G54000.1 22.193 374 237 14 3 342 7 360 1.51e-11 65.5
Msa0314590 AT1G54010.1 23.907 343 206 15 31 337 32 355 1.59e-11 65.5
Msa0314590 AT3G14210.1 24.638 345 197 13 33 337 36 357 5.85e-11 63.5
Msa0314590 AT1G28640.1 26.271 236 143 11 1 221 5 224 6.83e-11 63.5
Msa0314590 AT1G28660.2 28.713 202 116 9 34 221 36 223 7.93e-11 63.2

Find 83 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGTCTTCAACTTGTTCT+TGG 0.206330 2_4:-10406187 Msa0314590:five_prime_UTR
TATGATTCATCTAATAATTC+AGG 0.225334 2_4:-10404773 Msa0314590:CDS
AGAGTTATCTTTGAATTTAC+TGG 0.229234 2_4:-10405345 Msa0314590:intron
TTGATTGCAGCTCAACTTCT+TGG 0.235748 2_4:-10405791 Msa0314590:intron
TTAAATCAAATAAGTGTAAT+TGG 0.258101 2_4:-10404568 Msa0314590:three_prime_UTR
GTGCCTTGTGTATTTATCTT+TGG 0.270186 2_4:-10406027 Msa0314590:CDS
TATGACTTGTTGGGTAGAAT+TGG 0.306114 2_4:+10405405 None:intergenic
TGCTTGTATTATGTGAATAT+TGG 0.306140 2_4:-10405461 Msa0314590:CDS
AAATGTAATTACAATCCTTA+TGG 0.317299 2_4:-10405955 Msa0314590:CDS
ATGACTTGTTGGGTAGAATT+GGG 0.322325 2_4:+10405406 None:intergenic
TGTTGAACAAGAAATTGATA+TGG 0.325815 2_4:-10404720 Msa0314590:CDS
ACAAGAAATTGATATGGAAT+TGG 0.334843 2_4:-10404714 Msa0314590:CDS
CACAATCCATTCAACCTTGA+TGG 0.349633 2_4:+10404896 None:intergenic
GGGCTATAAGTATGACTTGT+TGG 0.353512 2_4:+10405395 None:intergenic
ATAGAAGTGACTATGCGTTT+TGG 0.364837 2_4:-10404847 Msa0314590:CDS
AACTATGCATCTGGCGGAGC+TGG 0.371338 2_4:-10405707 Msa0314590:CDS
GTCTTCAACTTGTTCTTGGT+TGG 0.371662 2_4:-10406183 Msa0314590:intron
CGAGAAAATATGTGTTAGTT+GGG 0.371873 2_4:-10405203 Msa0314590:CDS
TATGATAACTTTAGCAAAAG+AGG 0.386164 2_4:-10404502 Msa0314590:three_prime_UTR
GCGAGAAAATATGTGTTAGT+TGG 0.388425 2_4:-10405204 Msa0314590:CDS
CAGGGTTATGCTATTAGCTT+GGG 0.390236 2_4:-10405572 Msa0314590:CDS
TCGACCGTTGGTAAATCTTC+CGG 0.391397 2_4:+10405909 None:intergenic
GACTTTCCGATGGGACCAAC+CGG 0.394422 2_4:-10405928 Msa0314590:CDS
TGTTGTCCATCAAGGTTGAA+TGG 0.412513 2_4:-10404902 Msa0314590:CDS
GGAGACTCTTTATCTGATAG+TGG 0.414420 2_4:-10406006 Msa0314590:CDS
AAAATATGTGTTAGTTGGGT+TGG 0.414588 2_4:-10405199 Msa0314590:CDS
AGAGCTTCTGCATACTGCTC+AGG 0.428284 2_4:+10405374 None:intergenic
AAATATGTGTTAGTTGGGTT+GGG 0.439264 2_4:-10405198 Msa0314590:CDS
TTTGCAGACAAAAGAAGAAT+AGG 0.444279 2_4:+10406084 None:intergenic
TAAAATTATTACCATCTGAC+AGG 0.445247 2_4:+10405052 None:intergenic
CATAATACAAGCATTTGTTA+AGG 0.448958 2_4:+10405471 None:intergenic
TTAGACTTTCTTCTTAGAGA+TGG 0.451991 2_4:-10406136 Msa0314590:exon
TCTCAAATTGCTAGCAGACT+TGG 0.466523 2_4:-10405518 Msa0314590:CDS
ACAGGGTTATGCTATTAGCT+TGG 0.468271 2_4:-10405573 Msa0314590:intron
ATGCTCCTTGTTGTCCATCA+AGG 0.468990 2_4:-10404910 Msa0314590:CDS
GGCTATAAGTATGACTTGTT+GGG 0.471958 2_4:+10405396 None:intergenic
GAAAAGATTGTATCAAATGT+AGG 0.477042 2_4:+10404620 None:intergenic
TGACTTGTTGGGTAGAATTG+GGG 0.484356 2_4:+10405407 None:intergenic
ACAAGGTGCTTAATATCCAT+TGG 0.485696 2_4:+10404740 None:intergenic
AGATAAATACACAAGGCACT+TGG 0.485700 2_4:+10406031 None:intergenic
AAAGGTGTGAACTATGCATC+TGG 0.495068 2_4:-10405716 Msa0314590:CDS
ATCGGAAAGTCGATTCCATA+AGG 0.505437 2_4:+10405940 None:intergenic
ATGATTCATCTAATAATTCA+GGG 0.511656 2_4:-10404772 Msa0314590:CDS
AGCTTGTAATTGAAAAGTGA+CGG 0.519564 2_4:+10405159 None:intergenic
CAAATTGCTAGCAGACTTGG+AGG 0.523023 2_4:-10405515 Msa0314590:CDS
GGTACCAAGCCTCGGTGGGA+TGG 0.539300 2_4:+10404816 None:intergenic
TTCAGGGTTCACTTATCCAA+TGG 0.539520 2_4:-10404756 Msa0314590:CDS
TTACAAGCTTAAATCTCTAG+TGG 0.542536 2_4:-10405145 Msa0314590:CDS
GAGTCAGATGCCCTGTCAGA+TGG 0.545719 2_4:-10405063 Msa0314590:intron
GTCAACTGCAGTTCGACCGT+TGG 0.545979 2_4:+10405897 None:intergenic
CCACCATTTGCAAACATCAG+TGG 0.549194 2_4:-10405752 Msa0314590:CDS
AATCTTCCGGTTGGTCCCAT+CGG 0.551140 2_4:+10405922 None:intergenic
AATTCGAATGGAGACATACT+CGG 0.551240 2_4:-10405684 Msa0314590:CDS
AAGTCCATCCCACCGAGGCT+TGG 0.557254 2_4:-10404820 Msa0314590:CDS
CACAAATAGAATCAAACGTA+AGG 0.557723 2_4:+10404537 None:intergenic
GATAAATACACAAGGCACTT+GGG 0.558640 2_4:+10406032 None:intergenic
ACATTCTTGTTGCAATGAGA+AGG 0.562394 2_4:+10404795 None:intergenic
AGAGGTGACTCACAGTTATG+TGG 0.562551 2_4:-10404484 Msa0314590:three_prime_UTR
AATGGAGACATACTCGGCTA+AGG 0.563484 2_4:-10405678 Msa0314590:intron
TTCTATAATCAAGACATGGT+TGG 0.565519 2_4:-10406112 Msa0314590:CDS
GAACCACTGATGTTTGCAAA+TGG 0.568931 2_4:+10405749 None:intergenic
TTCCAGGCTCTACATGACAT+TGG 0.569074 2_4:-10405228 Msa0314590:intron
TATGGAATCGACTTTCCGAT+GGG 0.572364 2_4:-10405937 Msa0314590:CDS
TGGCGGAGCTGGAATTCGAA+TGG 0.584028 2_4:-10405696 Msa0314590:CDS
TTATGGAATCGACTTTCCGA+TGG 0.587602 2_4:-10405938 Msa0314590:CDS
TAGTCACTTCTATTATAGCA+TGG 0.591052 2_4:+10404857 None:intergenic
CCACTGATGTTTGCAAATGG+TGG 0.591872 2_4:+10405752 None:intergenic
ACTTGAACGTGTTTAAGTAG+AGG 0.594346 2_4:+10404670 None:intergenic
GAGCTTCTGCATACTGCTCA+GGG 0.600756 2_4:+10405375 None:intergenic
AGAAGGTACCAAGCCTCGGT+GGG 0.623013 2_4:+10404812 None:intergenic
AATGAGAAGGTACCAAGCCT+CGG 0.626887 2_4:+10404808 None:intergenic
TTCAACCTTGATGGACAACA+AGG 0.627150 2_4:+10404905 None:intergenic
TATCAATTTCTTGTTCAACA+AGG 0.630157 2_4:+10404723 None:intergenic
GAGAAGGTACCAAGCCTCGG+TGG 0.634613 2_4:+10404811 None:intergenic
CCGTTGGTAAATCTTCCGGT+TGG 0.639272 2_4:+10405913 None:intergenic
AAATAGAATCAAACGTAAGG+TGG 0.643932 2_4:+10404540 None:intergenic
AGTGGTTCAGACATACTCAA+AGG 0.657804 2_4:-10405734 Msa0314590:CDS
AAAATTATTACCATCTGACA+GGG 0.687534 2_4:+10405053 None:intergenic
GGTGTGAACTATGCATCTGG+CGG 0.691974 2_4:-10405713 Msa0314590:CDS
TGGATTCTATAATCAAGACA+TGG 0.712050 2_4:-10406116 Msa0314590:CDS
TCTCCAAAGATAAATACACA+AGG 0.735148 2_4:+10406024 None:intergenic
GGATGAAGTCCATCCCACCG+AGG 0.748304 2_4:-10404825 Msa0314590:CDS
CCAACCGGAAGATTTACCAA+CGG 0.775116 2_4:-10405913 Msa0314590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAATATATATAATATGA+TGG - chr2_4:10405387-10405406 Msa0314590:CDS 10.0%
!! ATTCAATATATATAATATGA+TGG - chr2_4:10405387-10405406 Msa0314590:CDS 10.0%
!! TTAAATCAAATAAGTGTAAT+TGG - chr2_4:10406088-10406107 Msa0314590:CDS 15.0%
!! TTAAATCAAATAAGTGTAAT+TGG - chr2_4:10406088-10406107 Msa0314590:CDS 15.0%
!! ATGAATCCAGATAATAATTA+AGG + chr2_4:10404501-10404520 None:intergenic 20.0%
!! AAATGTAATTACAATCCTTA+TGG - chr2_4:10404701-10404720 Msa0314590:CDS 20.0%
!! AATAATATAGCCAAGTTAAA+AGG + chr2_4:10404799-10404818 None:intergenic 20.0%
!! TATGATTCATCTAATAATTC+AGG - chr2_4:10405883-10405902 Msa0314590:intron 20.0%
!! ATGATTCATCTAATAATTCA+GGG - chr2_4:10405884-10405903 Msa0314590:intron 20.0%
!! ATGAATCCAGATAATAATTA+AGG + chr2_4:10404501-10404520 None:intergenic 20.0%
!! AAATGTAATTACAATCCTTA+TGG - chr2_4:10404701-10404720 Msa0314590:CDS 20.0%
!! AATAATATAGCCAAGTTAAA+AGG + chr2_4:10404799-10404818 None:intergenic 20.0%
!! TATGATTCATCTAATAATTC+AGG - chr2_4:10405883-10405902 Msa0314590:intron 20.0%
!! ATGATTCATCTAATAATTCA+GGG - chr2_4:10405884-10405903 Msa0314590:intron 20.0%
! TTGGTTCCTTAATTATTATC+TGG - chr2_4:10404492-10404511 Msa0314590:three_prime_UTR 25.0%
!! ATTGTAATTACATTTTGCAG+AGG + chr2_4:10404696-10404715 None:intergenic 25.0%
!!! TAAGTAACATCCTTTTAACT+TGG - chr2_4:10404786-10404805 Msa0314590:CDS 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_4:10405188-10405207 None:intergenic 25.0%
! TGCTTGTATTATGTGAATAT+TGG - chr2_4:10405195-10405214 Msa0314590:CDS 25.0%
! AGAGTTATCTTTGAATTTAC+TGG - chr2_4:10405311-10405330 Msa0314590:intron 25.0%
! AAAATTATTACCATCTGACA+GGG + chr2_4:10405606-10405625 None:intergenic 25.0%
! TAAAATTATTACCATCTGAC+AGG + chr2_4:10405607-10405626 None:intergenic 25.0%
! TATCAATTTCTTGTTCAACA+AGG + chr2_4:10405936-10405955 None:intergenic 25.0%
! TGTTGAACAAGAAATTGATA+TGG - chr2_4:10405936-10405955 Msa0314590:CDS 25.0%
! ACAAGAAATTGATATGGAAT+TGG - chr2_4:10405942-10405961 Msa0314590:CDS 25.0%
! GAAAAGATTGTATCAAATGT+AGG + chr2_4:10406039-10406058 None:intergenic 25.0%
! TATGATAACTTTAGCAAAAG+AGG - chr2_4:10406154-10406173 Msa0314590:intron 25.0%
! TTGGTTCCTTAATTATTATC+TGG - chr2_4:10404492-10404511 Msa0314590:three_prime_UTR 25.0%
!! ATTGTAATTACATTTTGCAG+AGG + chr2_4:10404696-10404715 None:intergenic 25.0%
!!! TAAGTAACATCCTTTTAACT+TGG - chr2_4:10404786-10404805 Msa0314590:CDS 25.0%
!! CATAATACAAGCATTTGTTA+AGG + chr2_4:10405188-10405207 None:intergenic 25.0%
! TGCTTGTATTATGTGAATAT+TGG - chr2_4:10405195-10405214 Msa0314590:CDS 25.0%
! AGAGTTATCTTTGAATTTAC+TGG - chr2_4:10405311-10405330 Msa0314590:intron 25.0%
! AAAATTATTACCATCTGACA+GGG + chr2_4:10405606-10405625 None:intergenic 25.0%
! TAAAATTATTACCATCTGAC+AGG + chr2_4:10405607-10405626 None:intergenic 25.0%
! TATCAATTTCTTGTTCAACA+AGG + chr2_4:10405936-10405955 None:intergenic 25.0%
! TGTTGAACAAGAAATTGATA+TGG - chr2_4:10405936-10405955 Msa0314590:CDS 25.0%
! ACAAGAAATTGATATGGAAT+TGG - chr2_4:10405942-10405961 Msa0314590:CDS 25.0%
! GAAAAGATTGTATCAAATGT+AGG + chr2_4:10406039-10406058 None:intergenic 25.0%
! TATGATAACTTTAGCAAAAG+AGG - chr2_4:10406154-10406173 Msa0314590:intron 25.0%
TTAGACTTTCTTCTTAGAGA+TGG - chr2_4:10404520-10404539 Msa0314590:three_prime_UTR 30.0%
TGGATTCTATAATCAAGACA+TGG - chr2_4:10404540-10404559 Msa0314590:three_prime_UTR 30.0%
TTCTATAATCAAGACATGGT+TGG - chr2_4:10404544-10404563 Msa0314590:three_prime_UTR 30.0%
TTTGCAGACAAAAGAAGAAT+AGG + chr2_4:10404575-10404594 None:intergenic 30.0%
TCTCCAAAGATAAATACACA+AGG + chr2_4:10404635-10404654 None:intergenic 30.0%
! TAATTACATTTTGCAGAGGT+AGG + chr2_4:10404692-10404711 None:intergenic 30.0%
!!! CGGACATAATGTTATTTTTG+CGG + chr2_4:10405062-10405081 None:intergenic 30.0%
AAATAACATTATGTCCGTAC+AGG - chr2_4:10405065-10405084 Msa0314590:CDS 30.0%
AATAACATTATGTCCGTACA+GGG - chr2_4:10405066-10405085 Msa0314590:CDS 30.0%
! TAAAACACTGAGATTTTGAG+TGG + chr2_4:10405344-10405363 None:intergenic 30.0%
CAATTAGTGAAAGAAAGCAA+GGG + chr2_4:10405367-10405386 None:intergenic 30.0%
TCAATTAGTGAAAGAAAGCA+AGG + chr2_4:10405368-10405387 None:intergenic 30.0%
TATTAGTTCCATTTGATTCC+AGG - chr2_4:10405412-10405431 Msa0314590:CDS 30.0%
CGAGAAAATATGTGTTAGTT+GGG - chr2_4:10405453-10405472 Msa0314590:CDS 30.0%
AAAATATGTGTTAGTTGGGT+TGG - chr2_4:10405457-10405476 Msa0314590:CDS 30.0%
AAATATGTGTTAGTTGGGTT+GGG - chr2_4:10405458-10405477 Msa0314590:CDS 30.0%
AGCTTGTAATTGAAAAGTGA+CGG + chr2_4:10405500-10405519 None:intergenic 30.0%
TTACAAGCTTAAATCTCTAG+TGG - chr2_4:10405511-10405530 Msa0314590:CDS 30.0%
TAGCTACAGTTTAATGTGAT+TGG - chr2_4:10405659-10405678 Msa0314590:intron 30.0%
!!! TCAATGAATCTCAGGTTTTT+TGG - chr2_4:10405717-10405736 Msa0314590:CDS 30.0%
TAGTCACTTCTATTATAGCA+TGG + chr2_4:10405802-10405821 None:intergenic 30.0%
AAATAGAATCAAACGTAAGG+TGG + chr2_4:10406119-10406138 None:intergenic 30.0%
CACAAATAGAATCAAACGTA+AGG + chr2_4:10406122-10406141 None:intergenic 30.0%
TTAGACTTTCTTCTTAGAGA+TGG - chr2_4:10404520-10404539 Msa0314590:three_prime_UTR 30.0%
TGGATTCTATAATCAAGACA+TGG - chr2_4:10404540-10404559 Msa0314590:three_prime_UTR 30.0%
TTCTATAATCAAGACATGGT+TGG - chr2_4:10404544-10404563 Msa0314590:three_prime_UTR 30.0%
TTTGCAGACAAAAGAAGAAT+AGG + chr2_4:10404575-10404594 None:intergenic 30.0%
TCTCCAAAGATAAATACACA+AGG + chr2_4:10404635-10404654 None:intergenic 30.0%
! TAATTACATTTTGCAGAGGT+AGG + chr2_4:10404692-10404711 None:intergenic 30.0%
!!! CGGACATAATGTTATTTTTG+CGG + chr2_4:10405062-10405081 None:intergenic 30.0%
AAATAACATTATGTCCGTAC+AGG - chr2_4:10405065-10405084 Msa0314590:CDS 30.0%
AATAACATTATGTCCGTACA+GGG - chr2_4:10405066-10405085 Msa0314590:CDS 30.0%
! TAAAACACTGAGATTTTGAG+TGG + chr2_4:10405344-10405363 None:intergenic 30.0%
CAATTAGTGAAAGAAAGCAA+GGG + chr2_4:10405367-10405386 None:intergenic 30.0%
TCAATTAGTGAAAGAAAGCA+AGG + chr2_4:10405368-10405387 None:intergenic 30.0%
TATTAGTTCCATTTGATTCC+AGG - chr2_4:10405412-10405431 Msa0314590:CDS 30.0%
CGAGAAAATATGTGTTAGTT+GGG - chr2_4:10405453-10405472 Msa0314590:CDS 30.0%
AAAATATGTGTTAGTTGGGT+TGG - chr2_4:10405457-10405476 Msa0314590:CDS 30.0%
AAATATGTGTTAGTTGGGTT+GGG - chr2_4:10405458-10405477 Msa0314590:CDS 30.0%
AGCTTGTAATTGAAAAGTGA+CGG + chr2_4:10405500-10405519 None:intergenic 30.0%
TTACAAGCTTAAATCTCTAG+TGG - chr2_4:10405511-10405530 Msa0314590:CDS 30.0%
TAGCTACAGTTTAATGTGAT+TGG - chr2_4:10405659-10405678 Msa0314590:intron 30.0%
!!! TCAATGAATCTCAGGTTTTT+TGG - chr2_4:10405717-10405736 Msa0314590:CDS 30.0%
TAGTCACTTCTATTATAGCA+TGG + chr2_4:10405802-10405821 None:intergenic 30.0%
AAATAGAATCAAACGTAAGG+TGG + chr2_4:10406119-10406138 None:intergenic 30.0%
CACAAATAGAATCAAACGTA+AGG + chr2_4:10406122-10406141 None:intergenic 30.0%
! GATAAATACACAAGGCACTT+GGG + chr2_4:10404627-10404646 None:intergenic 35.0%
! AGATAAATACACAAGGCACT+TGG + chr2_4:10404628-10404647 None:intergenic 35.0%
GTGCCTTGTGTATTTATCTT+TGG - chr2_4:10404629-10404648 Msa0314590:three_prime_UTR 35.0%
AATTCGAATGGAGACATACT+CGG - chr2_4:10404972-10404991 Msa0314590:intron 35.0%
!! ATGACTTGTTGGGTAGAATT+GGG + chr2_4:10405253-10405272 None:intergenic 35.0%
!! TATGACTTGTTGGGTAGAAT+TGG + chr2_4:10405254-10405273 None:intergenic 35.0%
!! GGCTATAAGTATGACTTGTT+GGG + chr2_4:10405263-10405282 None:intergenic 35.0%
GCGAGAAAATATGTGTTAGT+TGG - chr2_4:10405452-10405471 Msa0314590:CDS 35.0%
! CAGTTTAATGTGATTGGTTG+AGG - chr2_4:10405665-10405684 Msa0314590:intron 35.0%
! TTATAGCATGGCTTTTCATC+AGG + chr2_4:10405790-10405809 None:intergenic 35.0%
! ATAGAAGTGACTATGCGTTT+TGG - chr2_4:10405809-10405828 Msa0314590:intron 35.0%
! TAGAAGTGACTATGCGTTTT+GGG - chr2_4:10405810-10405829 Msa0314590:intron 35.0%
ACATTCTTGTTGCAATGAGA+AGG + chr2_4:10405864-10405883 None:intergenic 35.0%
! ACAAGGTGCTTAATATCCAT+TGG + chr2_4:10405919-10405938 None:intergenic 35.0%
ACTTGAACGTGTTTAAGTAG+AGG + chr2_4:10405989-10406008 None:intergenic 35.0%
! GATAAATACACAAGGCACTT+GGG + chr2_4:10404627-10404646 None:intergenic 35.0%
! AGATAAATACACAAGGCACT+TGG + chr2_4:10404628-10404647 None:intergenic 35.0%
GTGCCTTGTGTATTTATCTT+TGG - chr2_4:10404629-10404648 Msa0314590:three_prime_UTR 35.0%
AATTCGAATGGAGACATACT+CGG - chr2_4:10404972-10404991 Msa0314590:intron 35.0%
!! ATGACTTGTTGGGTAGAATT+GGG + chr2_4:10405253-10405272 None:intergenic 35.0%
!! TATGACTTGTTGGGTAGAAT+TGG + chr2_4:10405254-10405273 None:intergenic 35.0%
!! GGCTATAAGTATGACTTGTT+GGG + chr2_4:10405263-10405282 None:intergenic 35.0%
GCGAGAAAATATGTGTTAGT+TGG - chr2_4:10405452-10405471 Msa0314590:CDS 35.0%
! CAGTTTAATGTGATTGGTTG+AGG - chr2_4:10405665-10405684 Msa0314590:intron 35.0%
! TTATAGCATGGCTTTTCATC+AGG + chr2_4:10405790-10405809 None:intergenic 35.0%
! ATAGAAGTGACTATGCGTTT+TGG - chr2_4:10405809-10405828 Msa0314590:intron 35.0%
! TAGAAGTGACTATGCGTTTT+GGG - chr2_4:10405810-10405829 Msa0314590:intron 35.0%
ACATTCTTGTTGCAATGAGA+AGG + chr2_4:10405864-10405883 None:intergenic 35.0%
! ACAAGGTGCTTAATATCCAT+TGG + chr2_4:10405919-10405938 None:intergenic 35.0%
ACTTGAACGTGTTTAAGTAG+AGG + chr2_4:10405989-10406008 None:intergenic 35.0%
! GTCTTCAACTTGTTCTTGGT+TGG - chr2_4:10404473-10404492 Msa0314590:three_prime_UTR 40.0%
GGAGACTCTTTATCTGATAG+TGG - chr2_4:10404650-10404669 Msa0314590:three_prime_UTR 40.0%
! TACATTTTGCAGAGGTAGGA+AGG + chr2_4:10404688-10404707 None:intergenic 40.0%
! ATCGGAAAGTCGATTCCATA+AGG + chr2_4:10404719-10404738 None:intergenic 40.0%
! TTATGGAATCGACTTTCCGA+TGG - chr2_4:10404718-10404737 Msa0314590:CDS 40.0%
! TATGGAATCGACTTTCCGAT+GGG - chr2_4:10404719-10404738 Msa0314590:CDS 40.0%
GAAGTTGAGCTGCAATCAAA+AGG + chr2_4:10404864-10404883 None:intergenic 40.0%
TTGATTGCAGCTCAACTTCT+TGG - chr2_4:10404865-10404884 Msa0314590:CDS 40.0%
GAACCACTGATGTTTGCAAA+TGG + chr2_4:10404910-10404929 None:intergenic 40.0%
AGTGGTTCAGACATACTCAA+AGG - chr2_4:10404922-10404941 Msa0314590:CDS 40.0%
! AAAGGTGTGAACTATGCATC+TGG - chr2_4:10404940-10404959 Msa0314590:intron 40.0%
GCTAATAGCATAACCCTGTA+CGG + chr2_4:10405082-10405101 None:intergenic 40.0%
ACAGGGTTATGCTATTAGCT+TGG - chr2_4:10405083-10405102 Msa0314590:CDS 40.0%
! CAGGGTTATGCTATTAGCTT+GGG - chr2_4:10405084-10405103 Msa0314590:CDS 40.0%
TCTCAAATTGCTAGCAGACT+TGG - chr2_4:10405138-10405157 Msa0314590:CDS 40.0%
!! TGACTTGTTGGGTAGAATTG+GGG + chr2_4:10405252-10405271 None:intergenic 40.0%
! GGGCTATAAGTATGACTTGT+TGG + chr2_4:10405264-10405283 None:intergenic 40.0%
ATGTAGAGCCTGGAATCAAA+TGG + chr2_4:10405423-10405442 None:intergenic 40.0%
CTGCATGTTCAATGAATCTC+AGG - chr2_4:10405709-10405728 Msa0314590:CDS 40.0%
! TTCAACCTTGATGGACAACA+AGG + chr2_4:10405754-10405773 None:intergenic 40.0%
TGTTGTCCATCAAGGTTGAA+TGG - chr2_4:10405754-10405773 Msa0314590:CDS 40.0%
CACAATCCATTCAACCTTGA+TGG + chr2_4:10405763-10405782 None:intergenic 40.0%
TTCAGGGTTCACTTATCCAA+TGG - chr2_4:10405900-10405919 Msa0314590:CDS 40.0%
! GTCTTCAACTTGTTCTTGGT+TGG - chr2_4:10404473-10404492 Msa0314590:three_prime_UTR 40.0%
GGAGACTCTTTATCTGATAG+TGG - chr2_4:10404650-10404669 Msa0314590:three_prime_UTR 40.0%
! TACATTTTGCAGAGGTAGGA+AGG + chr2_4:10404688-10404707 None:intergenic 40.0%
! ATCGGAAAGTCGATTCCATA+AGG + chr2_4:10404719-10404738 None:intergenic 40.0%
! TTATGGAATCGACTTTCCGA+TGG - chr2_4:10404718-10404737 Msa0314590:CDS 40.0%
! TATGGAATCGACTTTCCGAT+GGG - chr2_4:10404719-10404738 Msa0314590:CDS 40.0%
GAAGTTGAGCTGCAATCAAA+AGG + chr2_4:10404864-10404883 None:intergenic 40.0%
TTGATTGCAGCTCAACTTCT+TGG - chr2_4:10404865-10404884 Msa0314590:CDS 40.0%
GAACCACTGATGTTTGCAAA+TGG + chr2_4:10404910-10404929 None:intergenic 40.0%
AGTGGTTCAGACATACTCAA+AGG - chr2_4:10404922-10404941 Msa0314590:CDS 40.0%
! AAAGGTGTGAACTATGCATC+TGG - chr2_4:10404940-10404959 Msa0314590:intron 40.0%
GCTAATAGCATAACCCTGTA+CGG + chr2_4:10405082-10405101 None:intergenic 40.0%
ACAGGGTTATGCTATTAGCT+TGG - chr2_4:10405083-10405102 Msa0314590:CDS 40.0%
! CAGGGTTATGCTATTAGCTT+GGG - chr2_4:10405084-10405103 Msa0314590:CDS 40.0%
TCTCAAATTGCTAGCAGACT+TGG - chr2_4:10405138-10405157 Msa0314590:CDS 40.0%
!! TGACTTGTTGGGTAGAATTG+GGG + chr2_4:10405252-10405271 None:intergenic 40.0%
! GGGCTATAAGTATGACTTGT+TGG + chr2_4:10405264-10405283 None:intergenic 40.0%
ATGTAGAGCCTGGAATCAAA+TGG + chr2_4:10405423-10405442 None:intergenic 40.0%
CTGCATGTTCAATGAATCTC+AGG - chr2_4:10405709-10405728 Msa0314590:CDS 40.0%
! TTCAACCTTGATGGACAACA+AGG + chr2_4:10405754-10405773 None:intergenic 40.0%
TGTTGTCCATCAAGGTTGAA+TGG - chr2_4:10405754-10405773 Msa0314590:CDS 40.0%
CACAATCCATTCAACCTTGA+TGG + chr2_4:10405763-10405782 None:intergenic 40.0%
TTCAGGGTTCACTTATCCAA+TGG - chr2_4:10405900-10405919 Msa0314590:CDS 40.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_4:10404743-10404762 Msa0314590:CDS 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_4:10404750-10404769 None:intergenic 45.0%
CCACTGATGTTTGCAAATGG+TGG + chr2_4:10404907-10404926 None:intergenic 45.0%
CCACCATTTGCAAACATCAG+TGG - chr2_4:10404904-10404923 Msa0314590:CDS 45.0%
AATGGAGACATACTCGGCTA+AGG - chr2_4:10404978-10404997 Msa0314590:intron 45.0%
CAAATTGCTAGCAGACTTGG+AGG - chr2_4:10405141-10405160 Msa0314590:CDS 45.0%
TTCCAGGCTCTACATGACAT+TGG - chr2_4:10405428-10405447 Msa0314590:CDS 45.0%
! ATGCTCCTTGTTGTCCATCA+AGG - chr2_4:10405746-10405765 Msa0314590:CDS 45.0%
!! AATGAGAAGGTACCAAGCCT+CGG + chr2_4:10405851-10405870 None:intergenic 45.0%
AGAGGTGACTCACAGTTATG+TGG - chr2_4:10406172-10406191 Msa0314590:intron 45.0%
CCAACCGGAAGATTTACCAA+CGG - chr2_4:10404743-10404762 Msa0314590:CDS 45.0%
! TCGACCGTTGGTAAATCTTC+CGG + chr2_4:10404750-10404769 None:intergenic 45.0%
CCACTGATGTTTGCAAATGG+TGG + chr2_4:10404907-10404926 None:intergenic 45.0%
CCACCATTTGCAAACATCAG+TGG - chr2_4:10404904-10404923 Msa0314590:CDS 45.0%
AATGGAGACATACTCGGCTA+AGG - chr2_4:10404978-10404997 Msa0314590:intron 45.0%
CAAATTGCTAGCAGACTTGG+AGG - chr2_4:10405141-10405160 Msa0314590:CDS 45.0%
TTCCAGGCTCTACATGACAT+TGG - chr2_4:10405428-10405447 Msa0314590:CDS 45.0%
! ATGCTCCTTGTTGTCCATCA+AGG - chr2_4:10405746-10405765 Msa0314590:CDS 45.0%
!! AATGAGAAGGTACCAAGCCT+CGG + chr2_4:10405851-10405870 None:intergenic 45.0%
AGAGGTGACTCACAGTTATG+TGG - chr2_4:10406172-10406191 Msa0314590:intron 45.0%
! AATCTTCCGGTTGGTCCCAT+CGG + chr2_4:10404737-10404756 None:intergenic 50.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_4:10404746-10404765 None:intergenic 50.0%
GGTGTGAACTATGCATCTGG+CGG - chr2_4:10404943-10404962 Msa0314590:intron 50.0%
GAGCTTCTGCATACTGCTCA+GGG + chr2_4:10405284-10405303 None:intergenic 50.0%
AGAGCTTCTGCATACTGCTC+AGG + chr2_4:10405285-10405304 None:intergenic 50.0%
CTCCAATGTCATGTAGAGCC+TGG + chr2_4:10405433-10405452 None:intergenic 50.0%
! AATCTTCCGGTTGGTCCCAT+CGG + chr2_4:10404737-10404756 None:intergenic 50.0%
! CCGTTGGTAAATCTTCCGGT+TGG + chr2_4:10404746-10404765 None:intergenic 50.0%
GGTGTGAACTATGCATCTGG+CGG - chr2_4:10404943-10404962 Msa0314590:intron 50.0%
GAGCTTCTGCATACTGCTCA+GGG + chr2_4:10405284-10405303 None:intergenic 50.0%
AGAGCTTCTGCATACTGCTC+AGG + chr2_4:10405285-10405304 None:intergenic 50.0%
CTCCAATGTCATGTAGAGCC+TGG + chr2_4:10405433-10405452 None:intergenic 50.0%
GACTTTCCGATGGGACCAAC+CGG - chr2_4:10404728-10404747 Msa0314590:CDS 55.0%
GTCAACTGCAGTTCGACCGT+TGG + chr2_4:10404762-10404781 None:intergenic 55.0%
AACTATGCATCTGGCGGAGC+TGG - chr2_4:10404949-10404968 Msa0314590:intron 55.0%
TGGCGGAGCTGGAATTCGAA+TGG - chr2_4:10404960-10404979 Msa0314590:intron 55.0%
GAGTCAGATGCCCTGTCAGA+TGG - chr2_4:10405593-10405612 Msa0314590:intron 55.0%
!! AGAAGGTACCAAGCCTCGGT+GGG + chr2_4:10405847-10405866 None:intergenic 55.0%
GACTTTCCGATGGGACCAAC+CGG - chr2_4:10404728-10404747 Msa0314590:CDS 55.0%
GTCAACTGCAGTTCGACCGT+TGG + chr2_4:10404762-10404781 None:intergenic 55.0%
AACTATGCATCTGGCGGAGC+TGG - chr2_4:10404949-10404968 Msa0314590:intron 55.0%
TGGCGGAGCTGGAATTCGAA+TGG - chr2_4:10404960-10404979 Msa0314590:intron 55.0%
GAGTCAGATGCCCTGTCAGA+TGG - chr2_4:10405593-10405612 Msa0314590:intron 55.0%
!! AGAAGGTACCAAGCCTCGGT+GGG + chr2_4:10405847-10405866 None:intergenic 55.0%
GGATGAAGTCCATCCCACCG+AGG - chr2_4:10405831-10405850 Msa0314590:intron 60.0%
AAGTCCATCCCACCGAGGCT+TGG - chr2_4:10405836-10405855 Msa0314590:intron 60.0%
!! GAGAAGGTACCAAGCCTCGG+TGG + chr2_4:10405848-10405867 None:intergenic 60.0%
GGATGAAGTCCATCCCACCG+AGG - chr2_4:10405831-10405850 Msa0314590:intron 60.0%
AAGTCCATCCCACCGAGGCT+TGG - chr2_4:10405836-10405855 Msa0314590:intron 60.0%
!! GAGAAGGTACCAAGCCTCGG+TGG + chr2_4:10405848-10405867 None:intergenic 60.0%
GGTACCAAGCCTCGGTGGGA+TGG + chr2_4:10405843-10405862 None:intergenic 65.0%
GGTACCAAGCCTCGGTGGGA+TGG + chr2_4:10405843-10405862 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 10404470 10406208 10404470 ID=Msa0314590;Name=Msa0314590
chr2_4 mRNA 10404470 10406208 10404470 ID=Msa0314590-mRNA-1;Parent=Msa0314590;Name=Msa0314590-mRNA-1;_AED=0.22;_eAED=0.22;_QI=49|1|1|1|0.8|0.66|6|230|349
chr2_4 exon 10404470 10404947 10404470 ID=Msa0314590-mRNA-1:exon:4020;Parent=Msa0314590-mRNA-1
chr2_4 exon 10405064 10405244 10405064 ID=Msa0314590-mRNA-1:exon:4019;Parent=Msa0314590-mRNA-1
chr2_4 exon 10405346 10405591 10405346 ID=Msa0314590-mRNA-1:exon:4018;Parent=Msa0314590-mRNA-1
chr2_4 exon 10405679 10405803 10405679 ID=Msa0314590-mRNA-1:exon:4017;Parent=Msa0314590-mRNA-1
chr2_4 exon 10405890 10406163 10405890 ID=Msa0314590-mRNA-1:exon:4016;Parent=Msa0314590-mRNA-1
chr2_4 exon 10406184 10406208 10406184 ID=Msa0314590-mRNA-1:exon:4015;Parent=Msa0314590-mRNA-1
chr2_4 five_prime_UTR 10406184 10406208 10406184 ID=Msa0314590-mRNA-1:five_prime_utr;Parent=Msa0314590-mRNA-1
chr2_4 five_prime_UTR 10406140 10406163 10406140 ID=Msa0314590-mRNA-1:five_prime_utr;Parent=Msa0314590-mRNA-1
chr2_4 CDS 10405890 10406139 10405890 ID=Msa0314590-mRNA-1:cds;Parent=Msa0314590-mRNA-1
chr2_4 CDS 10405679 10405803 10405679 ID=Msa0314590-mRNA-1:cds;Parent=Msa0314590-mRNA-1
chr2_4 CDS 10405346 10405591 10405346 ID=Msa0314590-mRNA-1:cds;Parent=Msa0314590-mRNA-1
chr2_4 CDS 10405064 10405244 10405064 ID=Msa0314590-mRNA-1:cds;Parent=Msa0314590-mRNA-1
chr2_4 CDS 10404700 10404947 10404700 ID=Msa0314590-mRNA-1:cds;Parent=Msa0314590-mRNA-1
chr2_4 three_prime_UTR 10404470 10404699 10404470 ID=Msa0314590-mRNA-1:three_prime_utr;Parent=Msa0314590-mRNA-1
Gene Sequence

>Msa0314590

ATGGATTCTATAATCAAGACATGGTTGGTGTTACCTATTCTTCTTTTGTCTGCAAACTGTTTGCAACAATGTGTCACTGAGAAATCCCAAGTGCCTTGTGTATTTATCTTTGGAGACTCTTTATCTGATAGTGGAAACAACAATAACCTTCCTACCTCTGCAAAATGTAATTACAATCCTTATGGAATCGACTTTCCGATGGGACCAACCGGAAGATTTACCAACGGTCGAACTGCAGTTGACATAATAACTCAACTTCTTGGATTTGAGAATTTCATTCCACCATTTGCAAACATCAGTGGTTCAGACATACTCAAAGGTGTGAACTATGCATCTGGCGGAGCTGGAATTCGAATGGAGACATACTCGGCTAAGGGTTATGCTATTAGCTTGGGATTACAGTTAAGAAATCACAGAGTTATAGTTTCTCAAATTGCTAGCAGACTTGGAGGTATTGACAAAGCTCAAGAATACCTTAACAAATGCTTGTATTATGTGAATATTGGAAGTAACGATTACATAAACAATTACTTTCTTCCCCAATTCTACCCAACAAGTCATACTTATAGCCCTGAGCAGTATGCAGAAGCTCTAATTCAAGAGTTATCTTTGAATTTACTGGCTCTACATGACATTGGAGCGAGAAAATATGTGTTAGTTGGGTTGGGACTTTCAAGCAGTACTCCGTCACTTTTCAATTACAAGCTTAAATCTCTAGTGGAACATTTCAATAATAAGTTCTCTGCTGATTCTAAATTCATATTTATAAACACTACATTAGAGTCAGATGCCCTGTCAGATGGTTTTTTGGTTTCAAATGCTCCTTGTTGTCCATCAAGGTTGAATGGATTGTGCATTCCTGATGAAAAGCCATGCTATAATAGAAGTGACTATGCGTTTTGGGATGAAGTCCATCCCACCGAGGCTTGGTACCTTCTCATTGCAACAAGAATGTATGATTCATCTAATAATTCAGGGTTCACTTATCCAATGGATATTAAGCACCTTGTTGAACAAGAAATTGATATGGAATTGGATTTCACTTCATAG
Protein sequence

>Msa0314590

MDSIIKTWLVLPILLLSANCLQQCVTEKSQVPCVFIFGDSLSDSGNNNNLPTSAKCNYNPYGIDFPMGPTGRFTNGRTAVDIITQLLGFENFIPPFANISGSDILKGVNYASGGAGIRMETYSAKGYAISLGLQLRNHRVIVSQIASRLGGIDKAQEYLNKCLYYVNIGSNDYINNYFLPQFYPTSHTYSPEQYAEALIQELSLNLLALHDIGARKYVLVGLGLSSSTPSLFNYKLKSLVEHFNNKFSADSKFIFINTTLESDALSDGFLVSNAPCCPSRLNGLCIPDEKPCYNRSDYAFWDEVHPTEAWYLLIATRMYDSSNNSGFTYPMDIKHLVEQEIDMELDFTS*