Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242450 | XP_013463113.1 | 96.573 | 496 | 17 | 0 | 1 | 496 | 1 | 496 | 0.0 | 983 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242450 | sp|F4JVI3|MTEF5_ARATH | 63.677 | 446 | 151 | 4 | 48 | 483 | 24 | 468 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242450 | A0A072V715 | 96.573 | 496 | 17 | 0 | 1 | 496 | 1 | 496 | 0.0 | 983 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0242450 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0168960 | Msa0242450 | 0.803766 | 2.980559e-49 | -8.615850e-47 |
| Msa0242450 | Msa1326800 | 0.801779 | 7.664810e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242450 | MtrunA17_Chr2g0294671 | 96.573 | 496 | 17 | 0 | 1 | 496 | 1 | 496 | 0.0 | 983 |
| Msa0242450 | MtrunA17_Chr6g0448821 | 29.688 | 256 | 175 | 3 | 231 | 482 | 102 | 356 | 3.63e-30 | 121 |
| Msa0242450 | MtrunA17_Chr5g0417641 | 35.096 | 208 | 129 | 5 | 281 | 483 | 87 | 293 | 8.83e-30 | 118 |
| Msa0242450 | MtrunA17_Chr5g0428941 | 28.832 | 274 | 187 | 5 | 217 | 484 | 213 | 484 | 3.16e-29 | 120 |
| Msa0242450 | MtrunA17_Chr5g0428941 | 23.050 | 282 | 168 | 6 | 211 | 488 | 139 | 375 | 3.64e-13 | 71.6 |
| Msa0242450 | MtrunA17_Chr1g0212691 | 29.123 | 285 | 190 | 6 | 211 | 487 | 175 | 455 | 5.75e-28 | 116 |
| Msa0242450 | MtrunA17_Chr1g0212691 | 23.485 | 264 | 176 | 5 | 189 | 430 | 67 | 326 | 5.16e-14 | 74.3 |
| Msa0242450 | MtrunA17_Chr4g0034981 | 24.913 | 289 | 208 | 7 | 211 | 492 | 309 | 595 | 1.53e-26 | 113 |
| Msa0242450 | MtrunA17_Chr4g0034981 | 25.000 | 256 | 179 | 5 | 244 | 490 | 271 | 522 | 3.94e-20 | 93.6 |
| Msa0242450 | MtrunA17_Chr4g0034981 | 29.949 | 197 | 135 | 3 | 208 | 402 | 378 | 573 | 1.11e-14 | 76.6 |
| Msa0242450 | MtrunA17_Chr4g0043941 | 26.103 | 272 | 195 | 4 | 217 | 482 | 47 | 318 | 1.54e-26 | 110 |
| Msa0242450 | MtrunA17_Chr4g0043941 | 24.775 | 222 | 156 | 3 | 282 | 495 | 5 | 223 | 2.20e-14 | 74.3 |
| Msa0242450 | MtrunA17_Chr4g0043941 | 28.947 | 152 | 106 | 2 | 207 | 356 | 109 | 260 | 1.61e-12 | 68.6 |
| Msa0242450 | MtrunA17_Chr2g0304101 | 30.992 | 242 | 152 | 6 | 261 | 488 | 70 | 310 | 3.69e-26 | 108 |
| Msa0242450 | MtrunA17_Chr5g0445491 | 31.579 | 228 | 141 | 6 | 215 | 433 | 230 | 451 | 2.49e-25 | 108 |
| Msa0242450 | MtrunA17_Chr5g0445491 | 27.468 | 233 | 139 | 7 | 270 | 478 | 177 | 403 | 1.21e-17 | 85.5 |
| Msa0242450 | MtrunA17_Chr5g0445491 | 30.052 | 193 | 130 | 4 | 207 | 395 | 258 | 449 | 5.28e-17 | 83.6 |
| Msa0242450 | MtrunA17_Chr2g0311181 | 29.778 | 225 | 146 | 5 | 267 | 486 | 86 | 303 | 9.52e-23 | 99.0 |
| Msa0242450 | MtrunA17_Chr3g0127891 | 25.000 | 324 | 191 | 12 | 215 | 494 | 187 | 502 | 1.27e-20 | 94.7 |
| Msa0242450 | MtrunA17_Chr8g0391881 | 27.519 | 258 | 175 | 6 | 210 | 459 | 121 | 374 | 9.03e-20 | 90.9 |
| Msa0242450 | MtrunA17_Chr7g0250261 | 29.756 | 205 | 132 | 5 | 287 | 482 | 78 | 279 | 5.55e-16 | 78.6 |
| Msa0242450 | MtrunA17_Chr0c29g0494001 | 29.756 | 205 | 132 | 5 | 287 | 482 | 78 | 279 | 5.55e-16 | 78.6 |
| Msa0242450 | MtrunA17_Chr4g0067141 | 24.908 | 273 | 185 | 5 | 215 | 479 | 81 | 341 | 1.79e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242450 | AT4G14605.2 | 63.677 | 446 | 151 | 4 | 48 | 483 | 24 | 468 | 0.0 | 557 |
| Msa0242450 | AT4G14605.1 | 63.677 | 446 | 151 | 4 | 48 | 483 | 24 | 468 | 0.0 | 557 |
| Msa0242450 | AT2G21710.1 | 28.912 | 294 | 194 | 7 | 211 | 494 | 316 | 604 | 4.30e-33 | 133 |
| Msa0242450 | AT2G21710.1 | 30.366 | 191 | 130 | 3 | 208 | 396 | 385 | 574 | 2.58e-13 | 72.8 |
| Msa0242450 | AT2G21710.1 | 28.114 | 281 | 182 | 7 | 77 | 356 | 306 | 567 | 6.83e-13 | 71.6 |
| Msa0242450 | AT2G44020.1 | 27.500 | 320 | 188 | 6 | 210 | 487 | 143 | 460 | 1.01e-29 | 122 |
| Msa0242450 | AT4G38160.4 | 27.372 | 274 | 186 | 5 | 221 | 484 | 52 | 322 | 4.13e-27 | 112 |
| Msa0242450 | AT4G38160.4 | 30.719 | 153 | 103 | 3 | 207 | 356 | 110 | 262 | 4.58e-14 | 73.9 |
| Msa0242450 | AT4G38160.1 | 27.372 | 274 | 186 | 5 | 221 | 484 | 52 | 322 | 4.13e-27 | 112 |
| Msa0242450 | AT4G38160.1 | 30.719 | 153 | 103 | 3 | 207 | 356 | 110 | 262 | 4.58e-14 | 73.9 |
| Msa0242450 | AT1G78930.1 | 28.125 | 256 | 179 | 3 | 231 | 482 | 320 | 574 | 4.19e-27 | 115 |
| Msa0242450 | AT4G38160.2 | 27.372 | 274 | 186 | 5 | 221 | 484 | 52 | 322 | 6.87e-27 | 112 |
| Msa0242450 | AT4G38160.2 | 30.719 | 153 | 103 | 3 | 207 | 356 | 110 | 262 | 5.30e-14 | 73.9 |
| Msa0242450 | AT4G38160.3 | 27.372 | 274 | 186 | 5 | 221 | 484 | 52 | 322 | 6.88e-27 | 112 |
| Msa0242450 | AT4G38160.3 | 30.719 | 153 | 103 | 3 | 207 | 356 | 110 | 262 | 6.47e-14 | 73.9 |
| Msa0242450 | AT2G34620.1 | 30.833 | 240 | 151 | 6 | 261 | 486 | 56 | 294 | 2.48e-25 | 106 |
| Msa0242450 | AT2G34620.1 | 28.972 | 214 | 143 | 7 | 189 | 398 | 66 | 274 | 1.98e-11 | 65.5 |
| Msa0242450 | AT2G21710.2 | 28.049 | 246 | 162 | 7 | 211 | 446 | 316 | 556 | 6.57e-24 | 105 |
| Msa0242450 | AT2G21710.2 | 25.229 | 218 | 156 | 2 | 247 | 457 | 245 | 462 | 2.92e-15 | 79.0 |
| Msa0242450 | AT2G21710.2 | 28.685 | 251 | 162 | 6 | 77 | 326 | 306 | 540 | 8.69e-13 | 71.2 |
| Msa0242450 | AT2G21710.2 | 31.847 | 157 | 104 | 3 | 208 | 362 | 385 | 540 | 5.40e-12 | 68.6 |
| Msa0242450 | AT2G03050.1 | 32.039 | 206 | 129 | 6 | 289 | 486 | 70 | 272 | 9.26e-24 | 101 |
| Msa0242450 | AT2G03050.1 | 25.346 | 217 | 140 | 8 | 187 | 398 | 53 | 252 | 5.79e-11 | 63.9 |
| Msa0242450 | AT2G03050.2 | 32.039 | 206 | 129 | 6 | 289 | 486 | 71 | 273 | 9.80e-24 | 101 |
| Msa0242450 | AT2G03050.2 | 25.346 | 217 | 140 | 8 | 187 | 398 | 54 | 253 | 5.79e-11 | 63.9 |
| Msa0242450 | AT2G21710.3 | 28.163 | 245 | 161 | 7 | 211 | 445 | 316 | 555 | 1.50e-23 | 104 |
| Msa0242450 | AT2G21710.3 | 25.229 | 218 | 156 | 2 | 247 | 457 | 245 | 462 | 2.26e-15 | 79.3 |
| Msa0242450 | AT2G21710.3 | 28.685 | 251 | 162 | 6 | 77 | 326 | 306 | 540 | 1.01e-12 | 70.9 |
| Msa0242450 | AT2G21710.3 | 31.847 | 157 | 104 | 3 | 208 | 362 | 385 | 540 | 4.95e-12 | 68.6 |
| Msa0242450 | AT4G02990.2 | 25.614 | 285 | 196 | 6 | 210 | 484 | 214 | 492 | 3.37e-22 | 100 |
| Msa0242450 | AT4G02990.2 | 25.391 | 256 | 165 | 7 | 189 | 428 | 115 | 360 | 9.77e-15 | 77.0 |
| Msa0242450 | AT4G02990.1 | 25.614 | 285 | 196 | 6 | 210 | 484 | 214 | 492 | 3.37e-22 | 100 |
| Msa0242450 | AT4G02990.1 | 25.391 | 256 | 165 | 7 | 189 | 428 | 115 | 360 | 9.77e-15 | 77.0 |
| Msa0242450 | AT3G18870.1 | 27.962 | 211 | 128 | 5 | 286 | 482 | 68 | 268 | 3.21e-20 | 90.9 |
| Msa0242450 | AT5G55580.1 | 25.778 | 225 | 158 | 6 | 215 | 433 | 223 | 444 | 4.27e-19 | 90.5 |
| Msa0242450 | AT5G55580.1 | 28.571 | 196 | 131 | 4 | 207 | 396 | 251 | 443 | 5.30e-18 | 87.0 |
| Msa0242450 | AT5G55580.1 | 23.529 | 255 | 185 | 7 | 213 | 459 | 186 | 438 | 3.43e-16 | 81.6 |
| Msa0242450 | AT5G55580.1 | 26.267 | 217 | 131 | 7 | 285 | 478 | 186 | 396 | 4.55e-13 | 71.6 |
| Msa0242450 | AT5G55580.1 | 25.000 | 188 | 131 | 5 | 287 | 464 | 223 | 410 | 5.73e-12 | 68.2 |
| Msa0242450 | AT5G55580.2 | 25.941 | 239 | 162 | 7 | 215 | 441 | 117 | 352 | 4.83e-19 | 89.4 |
| Msa0242450 | AT5G55580.2 | 28.497 | 193 | 135 | 3 | 207 | 396 | 145 | 337 | 4.63e-18 | 86.7 |
| Msa0242450 | AT5G55580.2 | 23.529 | 255 | 185 | 7 | 213 | 459 | 80 | 332 | 3.21e-16 | 80.9 |
| Msa0242450 | AT5G55580.2 | 26.267 | 217 | 131 | 7 | 285 | 478 | 80 | 290 | 3.30e-13 | 71.6 |
| Msa0242450 | AT5G55580.2 | 25.000 | 188 | 131 | 5 | 287 | 464 | 117 | 304 | 4.73e-12 | 68.2 |
| Msa0242450 | AT2G36000.1 | 29.082 | 196 | 126 | 5 | 298 | 486 | 122 | 311 | 8.05e-18 | 85.1 |
| Msa0242450 | AT2G36000.2 | 26.840 | 231 | 153 | 7 | 265 | 486 | 88 | 311 | 9.32e-18 | 84.7 |
| Msa0242450 | AT5G55580.3 | 27.097 | 155 | 110 | 3 | 215 | 366 | 223 | 377 | 2.17e-14 | 75.5 |
| Msa0242450 | AT5G55580.3 | 24.747 | 198 | 128 | 6 | 285 | 467 | 186 | 377 | 2.10e-12 | 69.3 |
| Msa0242450 | AT5G54180.1 | 24.555 | 281 | 171 | 9 | 208 | 484 | 247 | 490 | 6.28e-14 | 74.3 |
| Msa0242450 | AT1G79220.1 | 30.769 | 143 | 92 | 3 | 211 | 351 | 149 | 286 | 1.26e-11 | 67.0 |
| Msa0242450 | AT1G62110.1 | 25.822 | 213 | 146 | 8 | 251 | 458 | 195 | 400 | 6.53e-11 | 64.7 |
Find 120 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAACTTGGTACCTTTC+AGG | 0.146574 | 2_2:+18640487 | Msa0242450:CDS |
| TATTGAAAATTGAGACTTTC+AGG | 0.181933 | 2_2:+18641726 | Msa0242450:three_prime_UTR |
| TTCAATTGTCCACAAAATTT+TGG | 0.188550 | 2_2:+18641316 | Msa0242450:CDS |
| AATTTAACCAGCTCAGATTT+TGG | 0.213106 | 2_2:-18641505 | None:intergenic |
| GAGACTTTCAGGCATGTTTC+AGG | 0.242717 | 2_2:+18641737 | Msa0242450:three_prime_UTR |
| ATGAAATTCTTTGAATCTTT+AGG | 0.253896 | 2_2:+18641058 | Msa0242450:CDS |
| GGATACACCGTGGAAGAAAT+TGG | 0.270831 | 2_2:+18641391 | Msa0242450:CDS |
| TTATCCTTAACAGGTGGATT+TGG | 0.286270 | 2_2:-18640704 | None:intergenic |
| AAAGAAAATGCAAGTTGATT+AGG | 0.286687 | 2_2:+18641669 | Msa0242450:CDS |
| TTCTCATTATCCTCACTAAA+AGG | 0.287136 | 2_2:+18640990 | Msa0242450:CDS |
| AATACTACATAATTTCCTTT+TGG | 0.321861 | 2_2:+18639274 | Msa0242450:five_prime_UTR |
| GTGAGAACAACGGCAGAAAT+TGG | 0.336390 | 2_2:-18639372 | None:intergenic |
| TTGTGTTACGGGCTTTATAT+TGG | 0.339450 | 2_2:-18641353 | None:intergenic |
| GAGAGAAGGTGATCAATAAA+AGG | 0.354084 | 2_2:-18640448 | None:intergenic |
| GGGATTATGATTATGAGATA+TGG | 0.366062 | 2_2:+18641412 | Msa0242450:CDS |
| CTATCCAAATCCACCTGTTA+AGG | 0.367312 | 2_2:+18640700 | Msa0242450:CDS |
| GCGAAAAGTTGCAGTTATAC+TGG | 0.367418 | 2_2:+18641817 | Msa0242450:three_prime_UTR |
| CTGAGAATTTGACGCCGAAA+TGG | 0.368665 | 2_2:+18641458 | Msa0242450:CDS |
| GCGTCCGATTTATCCTTAAC+AGG | 0.379368 | 2_2:-18640713 | None:intergenic |
| TTGAGGCCGGAGGAAGGTTC+CGG | 0.383042 | 2_2:-18639335 | None:intergenic |
| AAGTGATTAGAGGATGCTTT+TGG | 0.393419 | 2_2:+18642036 | Msa0242450:three_prime_UTR |
| TCCACCTGTTAAGGATAAAT+CGG | 0.398567 | 2_2:+18640709 | Msa0242450:CDS |
| TAAAGATTCAAAGAATTTCA+TGG | 0.398908 | 2_2:-18641056 | None:intergenic |
| GGTAACATGACACCAGGTTC+TGG | 0.402938 | 2_2:+18642057 | Msa0242450:three_prime_UTR |
| TTTACCCTCCAAACTATAGT+AGG | 0.403290 | 2_2:-18640915 | None:intergenic |
| ACACTGTAACTAACAATAGT+TGG | 0.403606 | 2_2:-18641226 | None:intergenic |
| GGTGAGATTACTGTTGAATC+AGG | 0.408489 | 2_2:+18641597 | Msa0242450:CDS |
| AGCTTACAACTCTTGAGATC+AGG | 0.409547 | 2_2:+18640606 | Msa0242450:CDS |
| CTAGGACTAGGAGGTGGAAT+TGG | 0.414937 | 2_2:-18640737 | None:intergenic |
| GAGTGGAATATCACTGCAAA+TGG | 0.423567 | 2_2:-18639440 | None:intergenic |
| AAACTATAGTAGGCAAAAGC+TGG | 0.426748 | 2_2:-18640905 | None:intergenic |
| GCAATGTACTTCCGTTCTCT+AGG | 0.440973 | 2_2:+18641271 | Msa0242450:CDS |
| GTTCCGGCGACTGTGGCTAT+AGG | 0.441238 | 2_2:-18639319 | None:intergenic |
| TTTGCGTGCTATAAGTTAGC+AGG | 0.443642 | 2_2:-18641126 | None:intergenic |
| AACCCTATTAGCAGCAGAAA+AGG | 0.445757 | 2_2:+18640339 | Msa0242450:CDS |
| CAATGTACTTCCGTTCTCTA+GGG | 0.451044 | 2_2:+18641272 | Msa0242450:CDS |
| TGCTATAAGTTAGCAGGGCT+GGG | 0.457629 | 2_2:-18641120 | None:intergenic |
| GTGCTATAAGTTAGCAGGGC+TGG | 0.460761 | 2_2:-18641121 | None:intergenic |
| TTTGTAAAATAAGTGATTAG+AGG | 0.461240 | 2_2:+18642026 | Msa0242450:three_prime_UTR |
| GTGGACAATTGAATAGAAGA+AGG | 0.464746 | 2_2:-18641306 | None:intergenic |
| TCCTCATATTGCTTATCTGA+TGG | 0.465202 | 2_2:+18640835 | Msa0242450:CDS |
| TGGTGCTATTTATTAAAATG+AGG | 0.471610 | 2_2:+18642077 | Msa0242450:three_prime_UTR |
| CTCAACTTCCTTCCTCTACA+AGG | 0.472025 | 2_2:+18640144 | Msa0242450:CDS |
| TGAGAATTTGACGCCGAAAT+GGG | 0.472691 | 2_2:+18641459 | Msa0242450:CDS |
| GGACGAAGATTTCCCTCAGC+AGG | 0.482343 | 2_2:-18640815 | None:intergenic |
| ACGGCAGAAATTGGCTTTGA+CGG | 0.484495 | 2_2:-18639363 | None:intergenic |
| GATACACCGTGGAAGAAATT+GGG | 0.490444 | 2_2:+18641392 | Msa0242450:CDS |
| AGGTGTTGACAAGGAACAAT+GGG | 0.491795 | 2_2:+18641078 | Msa0242450:CDS |
| TCTGCTGCTAATAGGGTTGG+AGG | 0.494961 | 2_2:-18640334 | None:intergenic |
| ACTAAAAGGCCTCAATTATG+TGG | 0.498259 | 2_2:+18641004 | Msa0242450:CDS |
| CACTGTAACTAACAATAGTT+GGG | 0.500646 | 2_2:-18641225 | None:intergenic |
| TAGAGTGAAGCTTCGAGAGA+AGG | 0.507356 | 2_2:-18640462 | None:intergenic |
| GAATGAATATTGATCAGATT+AGG | 0.508964 | 2_2:+18640864 | Msa0242450:CDS |
| CATAATCCCAATTTCTTCCA+CGG | 0.513081 | 2_2:-18641398 | None:intergenic |
| AAGTTAGCAGGGCTGGGAAA+CGG | 0.513243 | 2_2:-18641114 | None:intergenic |
| CGTTCTCTAGGGGTTGATGT+TGG | 0.515834 | 2_2:+18641283 | Msa0242450:CDS |
| AAACAAGGTTAATACAGCCT+TGG | 0.517039 | 2_2:-18640368 | None:intergenic |
| CTTCTGAGACACCAAATTCG+CGG | 0.517645 | 2_2:-18641174 | None:intergenic |
| AGAGAGAGGGGAAAAGAATG+AGG | 0.524907 | 2_2:+18639173 | Msa0242450:five_prime_UTR |
| TTGCAGTTATACTGGAACAT+AGG | 0.526011 | 2_2:+18641825 | Msa0242450:three_prime_UTR |
| TTCACTCTAAACACAAAACT+TGG | 0.527791 | 2_2:+18640476 | Msa0242450:CDS |
| ATTGTGGGGTGGTTGAATTG+AGG | 0.533017 | 2_2:-18639491 | None:intergenic |
| ATGGCACGGAATGGAAATTG+TGG | 0.536305 | 2_2:-18639507 | None:intergenic |
| AACTATAGTAGGCAAAAGCT+GGG | 0.542556 | 2_2:-18640904 | None:intergenic |
| GGATTACCCAAAATCTGAGC+TGG | 0.542893 | 2_2:+18641498 | Msa0242450:CDS |
| GAGGAAGGTTCCGGCGACTG+TGG | 0.544857 | 2_2:-18639326 | None:intergenic |
| TTTGCCTACTATAGTTTGGA+GGG | 0.546380 | 2_2:+18640911 | Msa0242450:CDS |
| AAGAAGACCCTTGTAGAGGA+AGG | 0.547271 | 2_2:-18640152 | None:intergenic |
| TCCATCAGATAAGCAATATG+AGG | 0.550329 | 2_2:-18640836 | None:intergenic |
| TATTGTCGAAATATTTGTGA+TGG | 0.553759 | 2_2:+18639196 | Msa0242450:five_prime_UTR |
| TGAGCCAAAGCAATGCCAAA+AGG | 0.556349 | 2_2:-18639289 | None:intergenic |
| GCAGAAATTGGCTTTGACGG+TGG | 0.565019 | 2_2:-18639360 | None:intergenic |
| TTAGAGTCTACCGCTGGACT+AGG | 0.566955 | 2_2:-18640755 | None:intergenic |
| TAATAAATAGCACCAGAACC+TGG | 0.566989 | 2_2:-18642069 | None:intergenic |
| AGCAGAAAAGGAAGAAGCCA+AGG | 0.567349 | 2_2:+18640351 | Msa0242450:CDS |
| GCTTACAACTCTTGAGATCA+GGG | 0.568117 | 2_2:+18640607 | Msa0242450:CDS |
| TCCGATTTATCCTTAACAGG+TGG | 0.568259 | 2_2:-18640710 | None:intergenic |
| TGGCACGGAATGGAAATTGT+GGG | 0.570971 | 2_2:-18639506 | None:intergenic |
| GATTCAAAGAATTTCATGGT+GGG | 0.572446 | 2_2:-18641052 | None:intergenic |
| GCATGTTTCAGGTCAGAAGA+TGG | 0.576797 | 2_2:+18641748 | Msa0242450:three_prime_UTR |
| AGAAATTCTAGTGGATGTAG+TGG | 0.577348 | 2_2:+18640673 | Msa0242450:CDS |
| CAGTCGCCGGAACCTTCCTC+CGG | 0.578310 | 2_2:+18639329 | Msa0242450:five_prime_UTR |
| TGGTGCAATAAATAGAGAGA+GGG | 0.585099 | 2_2:+18639160 | Msa0242450:five_prime_UTR |
| AATGTACTTCCGTTCTCTAG+GGG | 0.585781 | 2_2:+18641273 | Msa0242450:CDS |
| ACTTTCTTAGAGTCTACCGC+TGG | 0.586538 | 2_2:-18640761 | None:intergenic |
| TTGCGTGCTATAAGTTAGCA+GGG | 0.590380 | 2_2:-18641125 | None:intergenic |
| CATAGGTCGAACGATAACTT+CGG | 0.591001 | 2_2:+18641842 | Msa0242450:three_prime_UTR |
| GGAGGGTAAAATTAAGCCAG+TGG | 0.594688 | 2_2:+18640928 | Msa0242450:CDS |
| AGAAAAGAAGACCCTTGTAG+AGG | 0.600416 | 2_2:-18640156 | None:intergenic |
| ATTGCTTATCTGATGGAACT+CGG | 0.604771 | 2_2:+18640842 | Msa0242450:CDS |
| TGAATCTTTAGGTGTTGACA+AGG | 0.607852 | 2_2:+18641069 | Msa0242450:CDS |
| AGACTGATTCCACATAATTG+AGG | 0.610049 | 2_2:-18641013 | None:intergenic |
| TAGGTGTTGACAAGGAACAA+TGG | 0.611520 | 2_2:+18641077 | Msa0242450:CDS |
| TATTGTTAGTTACAGTGTAG+AGG | 0.611669 | 2_2:+18641231 | Msa0242450:CDS |
| ATAGGTCGAACGATAACTTC+GGG | 0.612763 | 2_2:+18641843 | Msa0242450:three_prime_UTR |
| TTGTAGCAACCAAACCTGAA+AGG | 0.613581 | 2_2:-18640501 | None:intergenic |
| TCACCTATAGCCACAGTCGC+CGG | 0.618258 | 2_2:+18639316 | Msa0242450:five_prime_UTR |
| CAACATCAACCCCTAGAGAA+CGG | 0.618334 | 2_2:-18641282 | None:intergenic |
| GAATCACTTTACGAAGAGCA+TGG | 0.623459 | 2_2:+18640650 | Msa0242450:CDS |
| TATACCACTCACTCGAGACA+CGG | 0.626260 | 2_2:-18640789 | None:intergenic |
| ACCTCCTAGTCCTAGTCCAG+CGG | 0.630206 | 2_2:+18640745 | Msa0242450:CDS |
| ATGGTGCAATAAATAGAGAG+AGG | 0.631706 | 2_2:+18639159 | Msa0242450:five_prime_UTR |
| GACGAAGATTTCCCTCAGCA+GGG | 0.635800 | 2_2:-18640814 | None:intergenic |
| TCTACCGCTGGACTAGGACT+AGG | 0.636230 | 2_2:-18640749 | None:intergenic |
| GGTGTCTCAGAAGAGAACAT+AGG | 0.641929 | 2_2:+18641184 | Msa0242450:CDS |
| AAAGCCGTGTCTCGAGTGAG+TGG | 0.646198 | 2_2:+18640785 | Msa0242450:CDS |
| AGAGCATGGAGAAATTCTAG+TGG | 0.648996 | 2_2:+18640664 | Msa0242450:CDS |
| GCTGGACTAGGACTAGGAGG+TGG | 0.650924 | 2_2:-18640743 | None:intergenic |
| GGTGCAATAAATAGAGAGAG+GGG | 0.652201 | 2_2:+18639161 | Msa0242450:five_prime_UTR |
| GAGTGGTATAGACCCTGCTG+AGG | 0.656302 | 2_2:+18640802 | Msa0242450:CDS |
| GAACGGAAGTACATTGCTGT+CGG | 0.657257 | 2_2:-18641265 | None:intergenic |
| TCAACTTCCTTCCTCTACAA+GGG | 0.663747 | 2_2:+18640145 | Msa0242450:CDS |
| AGTGGTATAGACCCTGCTGA+GGG | 0.666006 | 2_2:+18640803 | Msa0242450:CDS |
| TGCAACAACAAACATAGCAG+CGG | 0.667776 | 2_2:-18639413 | None:intergenic |
| ACCGCTGGACTAGGACTAGG+AGG | 0.679156 | 2_2:-18640746 | None:intergenic |
| AGATTCAAAGAATTTCATGG+TGG | 0.685200 | 2_2:-18641053 | None:intergenic |
| ACGGAATGGAAATTGTGGGG+TGG | 0.687703 | 2_2:-18639502 | None:intergenic |
| GGCACGGAATGGAAATTGTG+GGG | 0.705646 | 2_2:-18639505 | None:intergenic |
| GCTGCTGTTGGTGAGAACAA+CGG | 0.735807 | 2_2:-18639382 | None:intergenic |
| CTTGGAGAGAGGATACACCG+TGG | 0.810527 | 2_2:+18641381 | Msa0242450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAATAAGTCAAA+CGG | + | chr2_2:18639808-18639827 | Msa0242450:intron | 10.0% |
| !!! | TAGTTTTTACATACAAAAAA+TGG | + | chr2_2:18639229-18639248 | Msa0242450:five_prime_UTR | 15.0% |
| !! | TACGAAAAAAAATAACTTAT+AGG | - | chr2_2:18639845-18639864 | None:intergenic | 15.0% |
| !!! | ATAATGAGAATTTTTTCTTT+TGG | - | chr2_2:18640980-18640999 | None:intergenic | 15.0% |
| !!! | TGTTTTTTCTTTTTCTTTTT+CGG | + | chr2_2:18641778-18641797 | Msa0242450:three_prime_UTR | 15.0% |
| !!! | AATACTACATAATTTCCTTT+TGG | + | chr2_2:18639274-18639293 | Msa0242450:five_prime_UTR | 20.0% |
| !!! | CACATTTTAATATGAAATAG+AGG | + | chr2_2:18639609-18639628 | Msa0242450:intron | 20.0% |
| !!! | ATTTTAATATGAAATAGAGG+AGG | + | chr2_2:18639612-18639631 | Msa0242450:intron | 20.0% |
| !!! | TTTTAATATGAAATAGAGGA+GGG | + | chr2_2:18639613-18639632 | Msa0242450:intron | 20.0% |
| !!! | GATAAGTTGAAAACAATTTT+TGG | + | chr2_2:18639888-18639907 | Msa0242450:intron | 20.0% |
| !!! | AGAGAAATAAAAAAGCATAA+TGG | - | chr2_2:18640027-18640046 | None:intergenic | 20.0% |
| !! | ATTATAGTATTACTGAAACT+TGG | + | chr2_2:18640085-18640104 | Msa0242450:intron | 20.0% |
| !!! | TAATAACTTTCTTTTTGCAT+TGG | + | chr2_2:18640540-18640559 | Msa0242450:intron | 20.0% |
| !! | TAAAGATTCAAAGAATTTCA+TGG | - | chr2_2:18641059-18641078 | None:intergenic | 20.0% |
| !! | ATGAAATTCTTTGAATCTTT+AGG | + | chr2_2:18641058-18641077 | Msa0242450:CDS | 20.0% |
| !! | AAAAAATAAAAATTGGTTGC+AGG | - | chr2_2:18641937-18641956 | None:intergenic | 20.0% |
| !!! | AACCAATTTTTATTTTTTGC+AGG | + | chr2_2:18641939-18641958 | Msa0242450:three_prime_UTR | 20.0% |
| !! | ATCCTGCAAAAAATAAAAAT+TGG | - | chr2_2:18641944-18641963 | None:intergenic | 20.0% |
| !! | TTTGTAAAATAAGTGATTAG+AGG | + | chr2_2:18642026-18642045 | Msa0242450:three_prime_UTR | 20.0% |
| ! | TATTGTCGAAATATTTGTGA+TGG | + | chr2_2:18639196-18639215 | Msa0242450:five_prime_UTR | 25.0% |
| !!! | ATCTTTATTGGTTTTAAGAG+TGG | - | chr2_2:18639460-18639479 | None:intergenic | 25.0% |
| !! | GAGAAAGTTTTCATCTTTAT+TGG | - | chr2_2:18639472-18639491 | None:intergenic | 25.0% |
| ! | AATGTTAGTAATTAGCTGAT+AGG | - | chr2_2:18639720-18639739 | None:intergenic | 25.0% |
| ! | ATTTGTTTGAGCTTATCAAT+TGG | - | chr2_2:18639969-18639988 | None:intergenic | 25.0% |
| !! | TAATATGAAGATTTTGCATC+AGG | + | chr2_2:18640120-18640139 | Msa0242450:intron | 25.0% |
| ! | TCTCATTGACATAATAATCA+GGG | + | chr2_2:18640579-18640598 | Msa0242450:intron | 25.0% |
| ! | GAATGAATATTGATCAGATT+AGG | + | chr2_2:18640864-18640883 | Msa0242450:CDS | 25.0% |
| !! | TTCAATTGTCCACAAAATTT+TGG | + | chr2_2:18641316-18641335 | Msa0242450:CDS | 25.0% |
| !!! | GTTAAATTCCCTCAATTTTT+TGG | + | chr2_2:18641520-18641539 | Msa0242450:CDS | 25.0% |
| ! | AACTGTATCCAAAAAATTGA+GGG | - | chr2_2:18641531-18641550 | None:intergenic | 25.0% |
| ! | AAACTGTATCCAAAAAATTG+AGG | - | chr2_2:18641532-18641551 | None:intergenic | 25.0% |
| !!! | AAAGAAAATGCAAGTTGATT+AGG | + | chr2_2:18641669-18641688 | Msa0242450:CDS | 25.0% |
| ! | TATTGAAAATTGAGACTTTC+AGG | + | chr2_2:18641726-18641745 | Msa0242450:three_prime_UTR | 25.0% |
| !!! | TGGTGCTATTTATTAAAATG+AGG | + | chr2_2:18642077-18642096 | Msa0242450:three_prime_UTR | 25.0% |
| ! | ATGGAAGTGTAAGAGAAAAA+TGG | - | chr2_2:18639529-18639548 | None:intergenic | 30.0% |
| ! | TTTTCTCTTACACTTCCATA+AGG | + | chr2_2:18639530-18639549 | Msa0242450:CDS | 30.0% |
| AAGAAAGAGATTGTACCTTA+TGG | - | chr2_2:18639548-18639567 | None:intergenic | 30.0% | |
| CTTATCTTCATAAGCTATCT+AGG | - | chr2_2:18639874-18639893 | None:intergenic | 30.0% | |
| ! | TTCTTTTCTCAGGAAAAATC+TGG | + | chr2_2:18640170-18640189 | Msa0242450:CDS | 30.0% |
| ATAAGCATTAGACCTTTCAT+TGG | + | chr2_2:18640265-18640284 | Msa0242450:intron | 30.0% | |
| TTCACTCTAAACACAAAACT+TGG | + | chr2_2:18640476-18640495 | Msa0242450:CDS | 30.0% | |
| GTCTCATTGACATAATAATC+AGG | + | chr2_2:18640578-18640597 | Msa0242450:intron | 30.0% | |
| !!! | GTTGAGTTTTTTCTTGAACT+TGG | + | chr2_2:18640950-18640969 | Msa0242450:CDS | 30.0% |
| TTCTCATTATCCTCACTAAA+AGG | + | chr2_2:18640990-18641009 | Msa0242450:CDS | 30.0% | |
| GATTCAAAGAATTTCATGGT+GGG | - | chr2_2:18641055-18641074 | None:intergenic | 30.0% | |
| AGATTCAAAGAATTTCATGG+TGG | - | chr2_2:18641056-18641075 | None:intergenic | 30.0% | |
| CACTGTAACTAACAATAGTT+GGG | - | chr2_2:18641228-18641247 | None:intergenic | 30.0% | |
| ACACTGTAACTAACAATAGT+TGG | - | chr2_2:18641229-18641248 | None:intergenic | 30.0% | |
| TATTGTTAGTTACAGTGTAG+AGG | + | chr2_2:18641231-18641250 | Msa0242450:CDS | 30.0% | |
| ! | ATGCTAAGACCAAAATTTTG+TGG | - | chr2_2:18641328-18641347 | None:intergenic | 30.0% |
| !!! | AAATTTTGGTCTTAGCATTG+AGG | + | chr2_2:18641330-18641349 | Msa0242450:CDS | 30.0% |
| TCCAAGAAAAATTGTGTTAC+GGG | - | chr2_2:18641367-18641386 | None:intergenic | 30.0% | |
| CTCCAAGAAAAATTGTGTTA+CGG | - | chr2_2:18641368-18641387 | None:intergenic | 30.0% | |
| GGGATTATGATTATGAGATA+TGG | + | chr2_2:18641412-18641431 | Msa0242450:CDS | 30.0% | |
| GTCAAAAAGTAATCCCATTT+CGG | - | chr2_2:18641475-18641494 | None:intergenic | 30.0% | |
| !!! | ATGGGATTACTTTTTGACTA+TGG | + | chr2_2:18641477-18641496 | Msa0242450:CDS | 30.0% |
| ! | ATTTAACCAGCTCAGATTTT+GGG | - | chr2_2:18641507-18641526 | None:intergenic | 30.0% |
| ! | AATTTAACCAGCTCAGATTT+TGG | - | chr2_2:18641508-18641527 | None:intergenic | 30.0% |
| !!! | TAGCATTGAAACTGTTTTTG+AGG | + | chr2_2:18641891-18641910 | Msa0242450:three_prime_UTR | 30.0% |
| !!! | AGCATTGAAACTGTTTTTGA+GGG | + | chr2_2:18641892-18641911 | Msa0242450:three_prime_UTR | 30.0% |
| ATGGTGCAATAAATAGAGAG+AGG | + | chr2_2:18639159-18639178 | Msa0242450:five_prime_UTR | 35.0% | |
| TGGTGCAATAAATAGAGAGA+GGG | + | chr2_2:18639160-18639179 | Msa0242450:five_prime_UTR | 35.0% | |
| ! | ATTTCCTTTTGGCATTGCTT+TGG | + | chr2_2:18639285-18639304 | Msa0242450:five_prime_UTR | 35.0% |
| AGTGTAAGAGAAAAATGGCA+CGG | - | chr2_2:18639524-18639543 | None:intergenic | 35.0% | |
| AATATGAAATAGAGGAGGGT+TGG | + | chr2_2:18639617-18639636 | Msa0242450:intron | 35.0% | |
| ATATGAAATAGAGGAGGGTT+GGG | + | chr2_2:18639618-18639637 | Msa0242450:intron | 35.0% | |
| ! | CTAATCACCAGAGTTTTACT+CGG | - | chr2_2:18639687-18639706 | None:intergenic | 35.0% |
| TAGATGTTGCAATTGACATG+AGG | + | chr2_2:18640219-18640238 | Msa0242450:intron | 35.0% | |
| ! | TTCCTTTTCTGCTGCTAATA+GGG | - | chr2_2:18640344-18640363 | None:intergenic | 35.0% |
| AAACAAGGTTAATACAGCCT+TGG | - | chr2_2:18640371-18640390 | None:intergenic | 35.0% | |
| !!! | ACCTTGTTTTTGAAGAAACG+AGG | + | chr2_2:18640382-18640401 | Msa0242450:CDS | 35.0% |
| ACCTCGTTTCTTCAAAAACA+AGG | - | chr2_2:18640386-18640405 | None:intergenic | 35.0% | |
| GAGAGAAGGTGATCAATAAA+AGG | - | chr2_2:18640451-18640470 | None:intergenic | 35.0% | |
| ! | AGAAATTCTAGTGGATGTAG+TGG | + | chr2_2:18640673-18640692 | Msa0242450:CDS | 35.0% |
| ! | TTATCCTTAACAGGTGGATT+TGG | - | chr2_2:18640707-18640726 | None:intergenic | 35.0% |
| TCCACCTGTTAAGGATAAAT+CGG | + | chr2_2:18640709-18640728 | Msa0242450:CDS | 35.0% | |
| TCCTCATATTGCTTATCTGA+TGG | + | chr2_2:18640835-18640854 | Msa0242450:CDS | 35.0% | |
| TCCATCAGATAAGCAATATG+AGG | - | chr2_2:18640839-18640858 | None:intergenic | 35.0% | |
| ATTGCTTATCTGATGGAACT+CGG | + | chr2_2:18640842-18640861 | Msa0242450:CDS | 35.0% | |
| AACTATAGTAGGCAAAAGCT+GGG | - | chr2_2:18640907-18640926 | None:intergenic | 35.0% | |
| AAACTATAGTAGGCAAAAGC+TGG | - | chr2_2:18640908-18640927 | None:intergenic | 35.0% | |
| ! | AGCTTTTGCCTACTATAGTT+TGG | + | chr2_2:18640907-18640926 | Msa0242450:CDS | 35.0% |
| ! | TTTTGCCTACTATAGTTTGG+AGG | + | chr2_2:18640910-18640929 | Msa0242450:CDS | 35.0% |
| TTTGCCTACTATAGTTTGGA+GGG | + | chr2_2:18640911-18640930 | Msa0242450:CDS | 35.0% | |
| TTTACCCTCCAAACTATAGT+AGG | - | chr2_2:18640918-18640937 | None:intergenic | 35.0% | |
| TCAAGAAAAAACTCAACCAC+TGG | - | chr2_2:18640947-18640966 | None:intergenic | 35.0% | |
| ! | ATAATTGAGGCCTTTTAGTG+AGG | - | chr2_2:18641003-18641022 | None:intergenic | 35.0% |
| ACTAAAAGGCCTCAATTATG+TGG | + | chr2_2:18641004-18641023 | Msa0242450:CDS | 35.0% | |
| ! | AGACTGATTCCACATAATTG+AGG | - | chr2_2:18641016-18641035 | None:intergenic | 35.0% |
| !! | TGAATCTTTAGGTGTTGACA+AGG | + | chr2_2:18641069-18641088 | Msa0242450:CDS | 35.0% |
| GTGGACAATTGAATAGAAGA+AGG | - | chr2_2:18641309-18641328 | None:intergenic | 35.0% | |
| ! | TTGTGTTACGGGCTTTATAT+TGG | - | chr2_2:18641356-18641375 | None:intergenic | 35.0% |
| ! | ACACAATTTTTCTTGGAGAG+AGG | + | chr2_2:18641370-18641389 | Msa0242450:CDS | 35.0% |
| CATAATCCCAATTTCTTCCA+CGG | - | chr2_2:18641401-18641420 | None:intergenic | 35.0% | |
| TTGCAGTTATACTGGAACAT+AGG | + | chr2_2:18641825-18641844 | Msa0242450:three_prime_UTR | 35.0% | |
| !!! | AAACTGTTTTTGAGGGACTT+TGG | + | chr2_2:18641899-18641918 | Msa0242450:three_prime_UTR | 35.0% |
| ! | AAGTGATTAGAGGATGCTTT+TGG | + | chr2_2:18642036-18642055 | Msa0242450:three_prime_UTR | 35.0% |
| TAATAAATAGCACCAGAACC+TGG | - | chr2_2:18642072-18642091 | None:intergenic | 35.0% | |
| GGTGCAATAAATAGAGAGAG+GGG | + | chr2_2:18639161-18639180 | Msa0242450:five_prime_UTR | 40.0% | |
| TGCAACAACAAACATAGCAG+CGG | - | chr2_2:18639416-18639435 | None:intergenic | 40.0% | |
| GAGTGGAATATCACTGCAAA+TGG | - | chr2_2:18639443-18639462 | None:intergenic | 40.0% | |
| AAGAGAAAAATGGCACGGAA+TGG | - | chr2_2:18639519-18639538 | None:intergenic | 40.0% | |
| !!! | CTGAAGCACTTTTTTTGGAC+AGG | - | chr2_2:18639745-18639764 | None:intergenic | 40.0% |
| !! | CTGTCCAAAAAAAGTGCTTC+AGG | + | chr2_2:18639743-18639762 | Msa0242450:intron | 40.0% |
| TCAACTTCCTTCCTCTACAA+GGG | + | chr2_2:18640145-18640164 | Msa0242450:CDS | 40.0% | |
| AGAAAAGAAGACCCTTGTAG+AGG | - | chr2_2:18640159-18640178 | None:intergenic | 40.0% | |
| ! | TACAAGGGTCTTCTTTTCTC+AGG | + | chr2_2:18640160-18640179 | Msa0242450:CDS | 40.0% |
| ! | GAGTACAAAGCACCAATGAA+AGG | - | chr2_2:18640280-18640299 | None:intergenic | 40.0% |
| ! | TTTTCTGCTGCTAATAGGGT+TGG | - | chr2_2:18640340-18640359 | None:intergenic | 40.0% |
| AACCCTATTAGCAGCAGAAA+AGG | + | chr2_2:18640339-18640358 | Msa0242450:CDS | 40.0% | |
| ! | CTTCCTTTTCTGCTGCTAAT+AGG | - | chr2_2:18640345-18640364 | None:intergenic | 40.0% |
| CACAAAACTTGGTACCTTTC+AGG | + | chr2_2:18640487-18640506 | Msa0242450:CDS | 40.0% | |
| !! | AACTTGGTACCTTTCAGGTT+TGG | + | chr2_2:18640492-18640511 | Msa0242450:intron | 40.0% |
| TTGTAGCAACCAAACCTGAA+AGG | - | chr2_2:18640504-18640523 | None:intergenic | 40.0% | |
| TCAATGAGACTGTGATTAGC+AGG | - | chr2_2:18640568-18640587 | None:intergenic | 40.0% | |
| AGCTTACAACTCTTGAGATC+AGG | + | chr2_2:18640606-18640625 | Msa0242450:CDS | 40.0% | |
| GCTTACAACTCTTGAGATCA+GGG | + | chr2_2:18640607-18640626 | Msa0242450:CDS | 40.0% | |
| GAATCACTTTACGAAGAGCA+TGG | + | chr2_2:18640650-18640669 | Msa0242450:CDS | 40.0% | |
| AGAGCATGGAGAAATTCTAG+TGG | + | chr2_2:18640664-18640683 | Msa0242450:CDS | 40.0% | |
| CTATCCAAATCCACCTGTTA+AGG | + | chr2_2:18640700-18640719 | Msa0242450:CDS | 40.0% | |
| TCCGATTTATCCTTAACAGG+TGG | - | chr2_2:18640713-18640732 | None:intergenic | 40.0% | |
| !! | TAGGTGTTGACAAGGAACAA+TGG | + | chr2_2:18641077-18641096 | Msa0242450:CDS | 40.0% |
| !! | AGGTGTTGACAAGGAACAAT+GGG | + | chr2_2:18641078-18641097 | Msa0242450:CDS | 40.0% |
| TTGCGTGCTATAAGTTAGCA+GGG | - | chr2_2:18641128-18641147 | None:intergenic | 40.0% | |
| TTTGCGTGCTATAAGTTAGC+AGG | - | chr2_2:18641129-18641148 | None:intergenic | 40.0% | |
| ! | GTAGATTTTCTCCGCGAATT+TGG | + | chr2_2:18641163-18641182 | Msa0242450:CDS | 40.0% |
| CAATGTACTTCCGTTCTCTA+GGG | + | chr2_2:18641272-18641291 | Msa0242450:CDS | 40.0% | |
| AATGTACTTCCGTTCTCTAG+GGG | + | chr2_2:18641273-18641292 | Msa0242450:CDS | 40.0% | |
| ! | GCCCGTAACACAATTTTTCT+TGG | + | chr2_2:18641363-18641382 | Msa0242450:CDS | 40.0% |
| GATACACCGTGGAAGAAATT+GGG | + | chr2_2:18641392-18641411 | Msa0242450:CDS | 40.0% | |
| TGAGAATTTGACGCCGAAAT+GGG | + | chr2_2:18641459-18641478 | Msa0242450:CDS | 40.0% | |
| ! | TTTTTCACGCGTGCATATCT+CGG | - | chr2_2:18641571-18641590 | None:intergenic | 40.0% |
| TATGCACGCGTGAAAAATTC+TGG | + | chr2_2:18641574-18641593 | Msa0242450:CDS | 40.0% | |
| ATGCACGCGTGAAAAATTCT+GGG | + | chr2_2:18641575-18641594 | Msa0242450:CDS | 40.0% | |
| GGTGAGATTACTGTTGAATC+AGG | + | chr2_2:18641597-18641616 | Msa0242450:CDS | 40.0% | |
| ! | GGATTCTTTTTACAGCAGCA+TGG | + | chr2_2:18641690-18641709 | Msa0242450:exon | 40.0% |
| GCGAAAAGTTGCAGTTATAC+TGG | + | chr2_2:18641817-18641836 | Msa0242450:three_prime_UTR | 40.0% | |
| CATAGGTCGAACGATAACTT+CGG | + | chr2_2:18641842-18641861 | Msa0242450:three_prime_UTR | 40.0% | |
| ATAGGTCGAACGATAACTTC+GGG | + | chr2_2:18641843-18641862 | Msa0242450:three_prime_UTR | 40.0% | |
| AGAGAGAGGGGAAAAGAATG+AGG | + | chr2_2:18639173-18639192 | Msa0242450:five_prime_UTR | 45.0% | |
| TGAGCCAAAGCAATGCCAAA+AGG | - | chr2_2:18639292-18639311 | None:intergenic | 45.0% | |
| !! | ACGGCAGAAATTGGCTTTGA+CGG | - | chr2_2:18639366-18639385 | None:intergenic | 45.0% |
| GTGAGAACAACGGCAGAAAT+TGG | - | chr2_2:18639375-18639394 | None:intergenic | 45.0% | |
| ATTGTGGGGTGGTTGAATTG+AGG | - | chr2_2:18639494-18639513 | None:intergenic | 45.0% | |
| TGGCACGGAATGGAAATTGT+GGG | - | chr2_2:18639509-18639528 | None:intergenic | 45.0% | |
| ATGGCACGGAATGGAAATTG+TGG | - | chr2_2:18639510-18639529 | None:intergenic | 45.0% | |
| !! | AGCTCAACTGGTTTGAGTCA+AGG | + | chr2_2:18639642-18639661 | Msa0242450:intron | 45.0% |
| !! | GCTCAACTGGTTTGAGTCAA+GGG | + | chr2_2:18639643-18639662 | Msa0242450:intron | 45.0% |
| TCAAGGGTTGAAGCAGTTAG+AGG | + | chr2_2:18639659-18639678 | Msa0242450:intron | 45.0% | |
| AGAGGATCCGAGTAAAACTC+TGG | + | chr2_2:18639677-18639696 | Msa0242450:intron | 45.0% | |
| !!! | AGCGCCTGAAGCACTTTTTT+TGG | - | chr2_2:18639750-18639769 | None:intergenic | 45.0% |
| CTCAACTTCCTTCCTCTACA+AGG | + | chr2_2:18640144-18640163 | Msa0242450:CDS | 45.0% | |
| AAGAAGACCCTTGTAGAGGA+AGG | - | chr2_2:18640155-18640174 | None:intergenic | 45.0% | |
| AGCAGAAAAGGAAGAAGCCA+AGG | + | chr2_2:18640351-18640370 | Msa0242450:CDS | 45.0% | |
| TAGAGTGAAGCTTCGAGAGA+AGG | - | chr2_2:18640465-18640484 | None:intergenic | 45.0% | |
| GCGTCCGATTTATCCTTAAC+AGG | - | chr2_2:18640716-18640735 | None:intergenic | 45.0% | |
| ACTTTCTTAGAGTCTACCGC+TGG | - | chr2_2:18640764-18640783 | None:intergenic | 45.0% | |
| TATACCACTCACTCGAGACA+CGG | - | chr2_2:18640792-18640811 | None:intergenic | 45.0% | |
| GGAGGGTAAAATTAAGCCAG+TGG | + | chr2_2:18640928-18640947 | Msa0242450:CDS | 45.0% | |
| TGCTATAAGTTAGCAGGGCT+GGG | - | chr2_2:18641123-18641142 | None:intergenic | 45.0% | |
| !! | CTTCTGAGACACCAAATTCG+CGG | - | chr2_2:18641177-18641196 | None:intergenic | 45.0% |
| GGTGTCTCAGAAGAGAACAT+AGG | + | chr2_2:18641184-18641203 | Msa0242450:CDS | 45.0% | |
| ! | GAACGGAAGTACATTGCTGT+CGG | - | chr2_2:18641268-18641287 | None:intergenic | 45.0% |
| GCAATGTACTTCCGTTCTCT+AGG | + | chr2_2:18641271-18641290 | Msa0242450:CDS | 45.0% | |
| CAACATCAACCCCTAGAGAA+CGG | - | chr2_2:18641285-18641304 | None:intergenic | 45.0% | |
| GGATACACCGTGGAAGAAAT+TGG | + | chr2_2:18641391-18641410 | Msa0242450:CDS | 45.0% | |
| CTGAGAATTTGACGCCGAAA+TGG | + | chr2_2:18641458-18641477 | Msa0242450:CDS | 45.0% | |
| GGATTACCCAAAATCTGAGC+TGG | + | chr2_2:18641498-18641517 | Msa0242450:CDS | 45.0% | |
| TGCACGCGTGAAAAATTCTG+GGG | + | chr2_2:18641576-18641595 | Msa0242450:CDS | 45.0% | |
| GAGACTTTCAGGCATGTTTC+AGG | + | chr2_2:18641737-18641756 | Msa0242450:three_prime_UTR | 45.0% | |
| ! | GCATGTTTCAGGTCAGAAGA+TGG | + | chr2_2:18641748-18641767 | Msa0242450:three_prime_UTR | 45.0% |
| !! | GCTTTTGGTAACATGACACC+AGG | + | chr2_2:18642051-18642070 | Msa0242450:three_prime_UTR | 45.0% |
| !!! | TTTGACGGTGGTTTTGAGGC+CGG | - | chr2_2:18639351-18639370 | None:intergenic | 50.0% |
| !!! | TGGCTTTGACGGTGGTTTTG+AGG | - | chr2_2:18639355-18639374 | None:intergenic | 50.0% |
| !! | GCAGAAATTGGCTTTGACGG+TGG | - | chr2_2:18639363-18639382 | None:intergenic | 50.0% |
| ! | GCTGCTGTTGGTGAGAACAA+CGG | - | chr2_2:18639385-18639404 | None:intergenic | 50.0% |
| ACGGAATGGAAATTGTGGGG+TGG | - | chr2_2:18639505-18639524 | None:intergenic | 50.0% | |
| GGCACGGAATGGAAATTGTG+GGG | - | chr2_2:18639508-18639527 | None:intergenic | 50.0% | |
| TCTGCTGCTAATAGGGTTGG+AGG | - | chr2_2:18640337-18640356 | None:intergenic | 50.0% | |
| CTAGGACTAGGAGGTGGAAT+TGG | - | chr2_2:18640740-18640759 | None:intergenic | 50.0% | |
| TTAGAGTCTACCGCTGGACT+AGG | - | chr2_2:18640758-18640777 | None:intergenic | 50.0% | |
| AGTGGTATAGACCCTGCTGA+GGG | + | chr2_2:18640803-18640822 | Msa0242450:CDS | 50.0% | |
| GACGAAGATTTCCCTCAGCA+GGG | - | chr2_2:18640817-18640836 | None:intergenic | 50.0% | |
| AAGTTAGCAGGGCTGGGAAA+CGG | - | chr2_2:18641117-18641136 | None:intergenic | 50.0% | |
| GTGCTATAAGTTAGCAGGGC+TGG | - | chr2_2:18641124-18641143 | None:intergenic | 50.0% | |
| !! | CGTTCTCTAGGGGTTGATGT+TGG | + | chr2_2:18641283-18641302 | Msa0242450:CDS | 50.0% |
| GGTAACATGACACCAGGTTC+TGG | + | chr2_2:18642057-18642076 | Msa0242450:three_prime_UTR | 50.0% | |
| TCACCTATAGCCACAGTCGC+CGG | + | chr2_2:18639316-18639335 | Msa0242450:five_prime_UTR | 55.0% | |
| ACCTCCTAGTCCTAGTCCAG+CGG | + | chr2_2:18640745-18640764 | Msa0242450:CDS | 55.0% | |
| ! | TCTACCGCTGGACTAGGACT+AGG | - | chr2_2:18640752-18640771 | None:intergenic | 55.0% |
| AAAGCCGTGTCTCGAGTGAG+TGG | + | chr2_2:18640785-18640804 | Msa0242450:CDS | 55.0% | |
| GAGTGGTATAGACCCTGCTG+AGG | + | chr2_2:18640802-18640821 | Msa0242450:CDS | 55.0% | |
| GGACGAAGATTTCCCTCAGC+AGG | - | chr2_2:18640818-18640837 | None:intergenic | 55.0% | |
| CTTGGAGAGAGGATACACCG+TGG | + | chr2_2:18641381-18641400 | Msa0242450:CDS | 55.0% | |
| GTTCCGGCGACTGTGGCTAT+AGG | - | chr2_2:18639322-18639341 | None:intergenic | 60.0% | |
| TTGAGGCCGGAGGAAGGTTC+CGG | - | chr2_2:18639338-18639357 | None:intergenic | 60.0% | |
| !!! | GTGGTTTTGAGGCCGGAGGA+AGG | - | chr2_2:18639344-18639363 | None:intergenic | 60.0% |
| GGAGGGTTGGGTAGCTCAAC+TGG | + | chr2_2:18639630-18639649 | Msa0242450:intron | 60.0% | |
| ! | GCTGGACTAGGACTAGGAGG+TGG | - | chr2_2:18640746-18640765 | None:intergenic | 60.0% |
| ! | ACCGCTGGACTAGGACTAGG+AGG | - | chr2_2:18640749-18640768 | None:intergenic | 60.0% |
| GAGGAAGGTTCCGGCGACTG+TGG | - | chr2_2:18639329-18639348 | None:intergenic | 65.0% | |
| CAGTCGCCGGAACCTTCCTC+CGG | + | chr2_2:18639329-18639348 | Msa0242450:five_prime_UTR | 65.0% | |
| !!! | GACGGTGGTTTTGAGGCCGG+AGG | - | chr2_2:18639348-18639367 | None:intergenic | 65.0% |
| GCGGCTGCTGCTGCTGCTGT+TGG | - | chr2_2:18639397-18639416 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 18639158 | 18642112 | 18639158 | ID=Msa0242450;Name=Msa0242450 |
| chr2_2 | mRNA | 18639158 | 18642112 | 18639158 | ID=Msa0242450-mRNA-1;Parent=Msa0242450;Name=Msa0242450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=263|1|1|1|1|1|4|422|496 |
| chr2_2 | exon | 18639158 | 18639551 | 18639158 | ID=Msa0242450-mRNA-1:exon:7597;Parent=Msa0242450-mRNA-1 |
| chr2_2 | exon | 18640130 | 18640191 | 18640130 | ID=Msa0242450-mRNA-1:exon:7598;Parent=Msa0242450-mRNA-1 |
| chr2_2 | exon | 18640302 | 18640508 | 18640302 | ID=Msa0242450-mRNA-1:exon:7599;Parent=Msa0242450-mRNA-1 |
| chr2_2 | exon | 18640600 | 18642112 | 18640600 | ID=Msa0242450-mRNA-1:exon:7600;Parent=Msa0242450-mRNA-1 |
| chr2_2 | five_prime_UTR | 18639158 | 18639420 | 18639158 | ID=Msa0242450-mRNA-1:five_prime_utr;Parent=Msa0242450-mRNA-1 |
| chr2_2 | CDS | 18639421 | 18639551 | 18639421 | ID=Msa0242450-mRNA-1:cds;Parent=Msa0242450-mRNA-1 |
| chr2_2 | CDS | 18640130 | 18640191 | 18640130 | ID=Msa0242450-mRNA-1:cds;Parent=Msa0242450-mRNA-1 |
| chr2_2 | CDS | 18640302 | 18640508 | 18640302 | ID=Msa0242450-mRNA-1:cds;Parent=Msa0242450-mRNA-1 |
| chr2_2 | CDS | 18640600 | 18641690 | 18640600 | ID=Msa0242450-mRNA-1:cds;Parent=Msa0242450-mRNA-1 |
| chr2_2 | three_prime_UTR | 18641691 | 18642112 | 18641691 | ID=Msa0242450-mRNA-1:three_prime_utr;Parent=Msa0242450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
